0s autopkgtest [05:51:04]: starting date and time: 2025-05-02 05:51:04+0000 0s autopkgtest [05:51:04]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [05:51:04]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jyqs58iz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade kleborate --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.0-1.2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-arm64-25.secgroup --name adt-questing-arm64-kleborate-20250502-052805-juju-7f2275-prod-proposed-migration-environment-20-2f3f093d-12d7-4a4f-913f-b0de7c28ad20 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 123s autopkgtest [05:53:07]: testbed dpkg architecture: arm64 123s autopkgtest [05:53:07]: testbed apt version: 3.0.0 124s autopkgtest [05:53:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 124s autopkgtest [05:53:08]: testbed release detected to be: None 125s autopkgtest [05:53:09]: updating testbed package index (apt update) 125s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 125s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 125s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2202 kB] 126s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [184 kB] 126s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [57.4 kB] 126s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [227 kB] 126s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1472 kB] 126s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [16.5 kB] 126s Fetched 4269 kB in 1s (3476 kB/s) 127s Reading package lists... 128s autopkgtest [05:53:12]: upgrading testbed (apt dist-upgrade and autopurge) 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s Entering ResolveByKeep 130s 130s Calculating upgrade... 130s The following packages will be upgraded: 130s python3-pkg-resources python3-setuptools 130s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Need to get 805 kB of archives. 130s After this operation, 108 kB of additional disk space will be used. 130s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3-pkg-resources all 78.1.0-1.2 [144 kB] 130s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 python3-setuptools all 78.1.0-1.2 [660 kB] 131s Fetched 805 kB in 1s (1326 kB/s) 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 131s Preparing to unpack .../python3-pkg-resources_78.1.0-1.2_all.deb ... 131s Unpacking python3-pkg-resources (78.1.0-1.2) over (75.8.0-1) ... 132s Preparing to unpack .../python3-setuptools_78.1.0-1.2_all.deb ... 132s Unpacking python3-setuptools (78.1.0-1.2) over (75.8.0-1) ... 132s Setting up python3-pkg-resources (78.1.0-1.2) ... 132s Setting up python3-setuptools (78.1.0-1.2) ... 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Starting pkgProblemResolver with broken count: 0 134s Starting 2 pkgProblemResolver with broken count: 0 134s Done 134s Solving dependencies... 135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s autopkgtest [05:53:21]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 137s autopkgtest [05:53:21]: @@@@@@@@@@@@@@@@@@@@ apt-source kleborate 143s Get:1 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (dsc) [2212 B] 143s Get:2 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (tar) [91.6 MB] 143s Get:3 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (diff) [5997 kB] 144s gpgv: Signature made Sun Feb 16 22:29:32 2025 UTC 144s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 144s gpgv: issuer "tchet@debian.org" 144s gpgv: Can't check signature: No public key 144s dpkg-source: warning: cannot verify inline signature for ./kleborate_2.4.1-4.dsc: no acceptable signature found 145s autopkgtest [05:53:29]: testing package kleborate version 2.4.1-4 148s autopkgtest [05:53:32]: build not needed 156s autopkgtest [05:53:40]: test run-unit-test: preparing testbed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following NEW packages will be installed: 157s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 157s kaptive kaptive-data kleborate kleborate-examples libblas3 libcairo2 157s libcapnp-1.1.0 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 157s libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libimagequant0 libjbig0 157s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libmbedcrypto16 157s libmbedtls21 libmbedx509-7 libmurmurhash2 libopenjp2-7 libpixman-1-0 157s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 157s libxcb-render0 libxcb-shm0 libxrender1 mash ncbi-blast+ ncbi-data 157s python3-biopython python3-cairo python3-freetype python3-numpy 157s python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo sgml-base 157s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 158s 0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded. 158s Need to get 68.8 MB of archives. 158s After this operation, 275 MB of additional disk space will be used. 158s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 158s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 158s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 158s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 159s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 160s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 sgml-base all 1.31 [11.4 kB] 160s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 160s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 160s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 libfontenc1 arm64 1:1.1.8-1build1 [13.9 kB] 160s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 160s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 160s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 xfonts-utils arm64 1:7.7+7 [95.6 kB] 160s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-urw-base35 all 20200910-8 [11.0 MB] 161s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 161s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 161s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 161s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 161s Get:18 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 161s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 161s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 161s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 161s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 161s Get:23 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 161s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 161s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 161s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 161s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 161s Get:28 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 161s Get:29 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 161s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 161s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 161s Get:32 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 161s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 161s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libpixman-1-0 arm64 0.44.0-3 [197 kB] 161s Get:35 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-render0 arm64 1.17.0-2 [16.6 kB] 161s Get:36 http://ftpmaster.internal/ubuntu questing/main arm64 libxcb-shm0 arm64 1.17.0-2 [5884 B] 161s Get:37 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 161s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libcairo2 arm64 1.18.4-1 [560 kB] 161s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 python3-cairo arm64 1.27.0-2 [122 kB] 161s Get:40 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-freetype all 2.5.1-1 [92.3 kB] 161s Get:41 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-rlpycairo all 0.3.0-3 [9130 B] 161s Get:42 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-reportlab all 4.3.1-1 [1137 kB] 161s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 xml-core all 0.19 [20.3 kB] 161s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 w3c-sgml-lib all 1.3-3 [280 kB] 161s Get:45 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-biopython arm64 1.85+dfsg-2build1 [1711 kB] 161s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB] 162s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 libmbedcrypto16 arm64 3.6.2-3ubuntu1 [258 kB] 162s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 libmbedx509-7 arm64 3.6.2-3ubuntu1 [35.7 kB] 162s Get:49 http://ftpmaster.internal/ubuntu questing/universe arm64 libmbedtls21 arm64 3.6.2-3ubuntu1 [122 kB] 162s Get:50 http://ftpmaster.internal/ubuntu questing/universe arm64 ncbi-blast+ arm64 2.16.0+ds-6build1 [14.8 MB] 162s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 kaptive all 2.0.8-1 [28.1 kB] 162s Get:52 http://ftpmaster.internal/ubuntu questing/universe arm64 kaptive-data all 2.0.8-1 [5432 kB] 163s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 libcapnp-1.1.0 arm64 1.1.0-2 [1371 kB] 163s Get:54 http://ftpmaster.internal/ubuntu questing/universe arm64 libgslcblas0 arm64 2.8+dfsg-5ubuntu1 [87.4 kB] 163s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 libgsl28 arm64 2.8+dfsg-5ubuntu1 [982 kB] 163s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 libmurmurhash2 arm64 1.6-1 [6098 B] 163s Get:57 http://ftpmaster.internal/ubuntu questing/universe arm64 mash arm64 2.3+dfsg-6build2 [149 kB] 163s Get:58 http://ftpmaster.internal/ubuntu questing/universe arm64 kleborate arm64 2.4.1-4 [8750 kB] 163s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 kleborate-examples all 2.4.1-4 [5990 kB] 164s Fetched 68.8 MB in 6s (11.7 MB/s) 164s Selecting previously unselected package python3-numpy-dev:arm64. 164s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117834 files and directories currently installed.) 164s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 164s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 164s Selecting previously unselected package libblas3:arm64. 164s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 164s Unpacking libblas3:arm64 (3.12.1-2) ... 164s Selecting previously unselected package libgfortran5:arm64. 164s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 164s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 164s Selecting previously unselected package liblapack3:arm64. 164s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 164s Unpacking liblapack3:arm64 (3.12.1-2) ... 164s Selecting previously unselected package python3-numpy. 164s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 164s Unpacking python3-numpy (1:2.2.3+ds-5) ... 164s Selecting previously unselected package sgml-base. 164s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 164s Unpacking sgml-base (1.31) ... 164s Selecting previously unselected package fonts-dejavu-mono. 164s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-mono (2.37-8) ... 164s Selecting previously unselected package fonts-dejavu-core. 164s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-core (2.37-8) ... 164s Selecting previously unselected package libfontenc1:arm64. 164s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_arm64.deb ... 164s Unpacking libfontenc1:arm64 (1:1.1.8-1build1) ... 164s Selecting previously unselected package x11-common. 164s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu4_all.deb ... 164s Unpacking x11-common (1:7.7+23ubuntu4) ... 164s Selecting previously unselected package xfonts-encodings. 164s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 164s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 164s Selecting previously unselected package xfonts-utils. 164s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_arm64.deb ... 164s Unpacking xfonts-utils (1:7.7+7) ... 164s Selecting previously unselected package fonts-urw-base35. 164s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 164s Unpacking fonts-urw-base35 (20200910-8) ... 165s Selecting previously unselected package fontconfig-config. 165s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 165s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 165s Selecting previously unselected package libgomp1:arm64. 165s Preparing to unpack .../14-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 165s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 165s Selecting previously unselected package libimagequant0:arm64. 165s Preparing to unpack .../15-libimagequant0_2.18.0-1build1_arm64.deb ... 165s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 165s Selecting previously unselected package libjpeg-turbo8:arm64. 165s Preparing to unpack .../16-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 165s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 165s Selecting previously unselected package libjpeg8:arm64. 165s Preparing to unpack .../17-libjpeg8_8c-2ubuntu11_arm64.deb ... 165s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 165s Selecting previously unselected package liblcms2-2:arm64. 165s Preparing to unpack .../18-liblcms2-2_2.16-2_arm64.deb ... 165s Unpacking liblcms2-2:arm64 (2.16-2) ... 165s Selecting previously unselected package libopenjp2-7:arm64. 165s Preparing to unpack .../19-libopenjp2-7_2.5.3-2_arm64.deb ... 165s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 165s Selecting previously unselected package libgraphite2-3:arm64. 165s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 165s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 165s Selecting previously unselected package libharfbuzz0b:arm64. 165s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_arm64.deb ... 165s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 165s Selecting previously unselected package libraqm0:arm64. 165s Preparing to unpack .../22-libraqm0_0.10.2-1_arm64.deb ... 165s Unpacking libraqm0:arm64 (0.10.2-1) ... 165s Selecting previously unselected package libdeflate0:arm64. 165s Preparing to unpack .../23-libdeflate0_1.23-1_arm64.deb ... 165s Unpacking libdeflate0:arm64 (1.23-1) ... 165s Selecting previously unselected package libjbig0:arm64. 165s Preparing to unpack .../24-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 165s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 165s Selecting previously unselected package liblerc4:arm64. 165s Preparing to unpack .../25-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 165s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 165s Selecting previously unselected package libsharpyuv0:arm64. 165s Preparing to unpack .../26-libsharpyuv0_1.5.0-0.1_arm64.deb ... 165s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 165s Selecting previously unselected package libwebp7:arm64. 165s Preparing to unpack .../27-libwebp7_1.5.0-0.1_arm64.deb ... 165s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 165s Selecting previously unselected package libtiff6:arm64. 165s Preparing to unpack .../28-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 165s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 165s Selecting previously unselected package libwebpdemux2:arm64. 165s Preparing to unpack .../29-libwebpdemux2_1.5.0-0.1_arm64.deb ... 165s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 165s Selecting previously unselected package libwebpmux3:arm64. 165s Preparing to unpack .../30-libwebpmux3_1.5.0-0.1_arm64.deb ... 165s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 165s Selecting previously unselected package python3-pil:arm64. 166s Preparing to unpack .../31-python3-pil_11.1.0-5build1_arm64.deb ... 166s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 166s Selecting previously unselected package libfontconfig1:arm64. 166s Preparing to unpack .../32-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 166s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 166s Selecting previously unselected package libpixman-1-0:arm64. 166s Preparing to unpack .../33-libpixman-1-0_0.44.0-3_arm64.deb ... 166s Unpacking libpixman-1-0:arm64 (0.44.0-3) ... 166s Selecting previously unselected package libxcb-render0:arm64. 166s Preparing to unpack .../34-libxcb-render0_1.17.0-2_arm64.deb ... 166s Unpacking libxcb-render0:arm64 (1.17.0-2) ... 166s Selecting previously unselected package libxcb-shm0:arm64. 166s Preparing to unpack .../35-libxcb-shm0_1.17.0-2_arm64.deb ... 166s Unpacking libxcb-shm0:arm64 (1.17.0-2) ... 166s Selecting previously unselected package libxrender1:arm64. 166s Preparing to unpack .../36-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 166s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 166s Selecting previously unselected package libcairo2:arm64. 166s Preparing to unpack .../37-libcairo2_1.18.4-1_arm64.deb ... 166s Unpacking libcairo2:arm64 (1.18.4-1) ... 166s Selecting previously unselected package python3-cairo. 166s Preparing to unpack .../38-python3-cairo_1.27.0-2_arm64.deb ... 166s Unpacking python3-cairo (1.27.0-2) ... 166s Selecting previously unselected package python3-freetype. 166s Preparing to unpack .../39-python3-freetype_2.5.1-1_all.deb ... 166s Unpacking python3-freetype (2.5.1-1) ... 166s Selecting previously unselected package python3-rlpycairo. 166s Preparing to unpack .../40-python3-rlpycairo_0.3.0-3_all.deb ... 166s Unpacking python3-rlpycairo (0.3.0-3) ... 166s Selecting previously unselected package python3-reportlab. 166s Preparing to unpack .../41-python3-reportlab_4.3.1-1_all.deb ... 166s Unpacking python3-reportlab (4.3.1-1) ... 166s Selecting previously unselected package xml-core. 166s Preparing to unpack .../42-xml-core_0.19_all.deb ... 166s Unpacking xml-core (0.19) ... 166s Selecting previously unselected package w3c-sgml-lib. 166s Preparing to unpack .../43-w3c-sgml-lib_1.3-3_all.deb ... 166s Unpacking w3c-sgml-lib (1.3-3) ... 166s Selecting previously unselected package python3-biopython. 166s Preparing to unpack .../44-python3-biopython_1.85+dfsg-2build1_arm64.deb ... 166s Unpacking python3-biopython (1.85+dfsg-2build1) ... 166s Selecting previously unselected package ncbi-data. 166s Preparing to unpack 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[05:54:26]: test run-unit-test: [----------------------- 203s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 203s warnings.warn( 267s strain species ST virulence_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus 267s Klebs_HS11286 Klebsiella pneumoniae ST11 1 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 267s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 KL1 267s MGH78578 Klebsiella pneumoniae ST38 0 - 0 - 0 - 0 - 0 - 0 - wzi50 KL15 (KL17,KL51,KL52) 267s NTUH-K2044 Klebsiella pneumoniae ST23 4 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 267s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 267s warnings.warn( 367s strain species ST virulence_score resistance_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits 367s Klebs_HS11286 Klebsiella pneumoniae ST11 1 3 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 aadA2^;rmtB;strA.v1^;strB.v1 - - - - - - - sul2 tet(G).v1 - dfrA12* TEM-1;TEM-1;TEM-1 - CTX-M-14;CTX-M-14 - KPC-2 SHV-11 35Q OmpK35-40% PmrB-10% GyrA-83I;ParC-80I aac(3)-IId*?-0% floR.v2*?;sul1?-63% 367s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 0 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 KL1 - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 367s MGH78578 Klebsiella pneumoniae ST38 0 1 - 0 - 0 - 0 - 0 - 0 - wzi50 KL15 (KL17,KL51,KL52) aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1 - - - - - catA1*;cmlA5 - sul1;sul2 tet(D) - - TEM-1D.v1^;TEM-1D.v1^ - SHV-12 - - SHV-11^ 238S;240K;35Q;35Q OmpK35-86% - GyrA-83Y OXA-9.v1*-42% - 367s NTUH-K2044 Klebsiella pneumoniae ST23 4 0 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 367s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 367s warnings.warn( 743s strain species ST virulence_score resistance_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus K_locus_confidence O_locus O_locus_confidence AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits 743s Klebs_HS11286 Klebsiella pneumoniae ST11 1 3 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 Very high O1/O2v1 Very high aadA2^;rmtB;strA.v1^;strB.v1 - - - - - - - sul2 tet(G).v1 - dfrA12* TEM-1;TEM-1;TEM-1 - CTX-M-14;CTX-M-14 - KPC-2 SHV-11 35Q OmpK35-40% PmrB-10% GyrA-83I;ParC-80I aac(3)-IId*?-0% floR.v2*?;sul1?-63% 743s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 0 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 unknown (KL1) None O1/O2v2 High - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 743s MGH78578 Klebsiella pneumoniae ST38 0 1 - 0 - 0 - 0 - 0 - 0 - wzi50 KL52 Perfect OL13 High aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1 - - - - - catA1*;cmlA5 - sul1;sul2 tet(D) - - TEM-1D.v1^;TEM-1D.v1^ - SHV-12 - - SHV-11^ 238S;240K;35Q;35Q OmpK35-86% - GyrA-83Y OXA-9.v1*-42% - 743s NTUH-K2044 Klebsiella pneumoniae ST23 4 0 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 Perfect O1/O2v2 Very high - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 744s autopkgtest [06:03:28]: test run-unit-test: -----------------------] 744s run-unit-test PASS 744s autopkgtest [06:03:28]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 745s autopkgtest [06:03:29]: @@@@@@@@@@@@@@@@@@@@ summary 745s run-unit-test PASS 751s nova [W] Using flock in prodstack6-arm64 751s Creating nova instance adt-questing-arm64-kleborate-20250502-052805-juju-7f2275-prod-proposed-migration-environment-20-2f3f093d-12d7-4a4f-913f-b0de7c28ad20 from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 751s nova [W] Timed out waiting for d9511cc3-8736-4236-9acd-5aef0a9cc453 to get deleted.