0s autopkgtest [12:34:20]: starting date and time: 2025-05-02 12:34:20+0000 0s autopkgtest [12:34:20]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [12:34:20]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rea1js_8/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-arm64-14.secgroup --name adt-questing-arm64-gudhi-20250502-123420-juju-7f2275-prod-proposed-migration-environment-23-e9115921-f20e-4282-929f-60f2835bb1b2 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 110s autopkgtest [12:36:10]: testbed dpkg architecture: arm64 110s autopkgtest [12:36:10]: testbed apt version: 3.0.0 111s autopkgtest [12:36:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s autopkgtest [12:36:11]: testbed release detected to be: None 112s autopkgtest [12:36:12]: updating testbed package index (apt update) 112s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 113s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 113s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 113s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 113s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2029 kB] 113s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 113s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [171 kB] 113s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [218 kB] 113s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1476 kB] 113s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 114s Fetched 4063 kB in 1s (3235 kB/s) 115s Reading package lists... 115s autopkgtest [12:36:15]: upgrading testbed (apt dist-upgrade and autopurge) 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 118s Entering ResolveByKeep 119s 119s Calculating upgrade... 120s The following packages will be upgraded: 120s htop libnpth0t64 mokutil mtd-utils nano usb.ids 120s 6 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 1196 kB of archives. 120s After this operation, 727 kB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 libnpth0t64 arm64 1.8-3 [8818 B] 120s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 120s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 usb.ids all 2025.04.01-1 [223 kB] 120s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 120s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 mokutil arm64 0.7.2-1 [28.4 kB] 120s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 121s Fetched 1196 kB in 1s (1843 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 121s Preparing to unpack .../libnpth0t64_1.8-3_arm64.deb ... 121s Unpacking libnpth0t64:arm64 (1.8-3) over (1.8-2) ... 122s Setting up libnpth0t64:arm64 (1.8-3) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 122s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 122s Unpacking nano (8.4-1) over (8.3-1) ... 122s Preparing to unpack .../usb.ids_2025.04.01-1_all.deb ... 122s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 122s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 122s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 122s Preparing to unpack .../mokutil_0.7.2-1_arm64.deb ... 122s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 122s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 122s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 122s Setting up mokutil (0.7.2-1) ... 122s Setting up htop (3.4.1-4) ... 122s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 122s Setting up usb.ids (2025.04.01-1) ... 122s Setting up nano (8.4-1) ... 122s Installing new version of config file /etc/nanorc ... 122s Processing triggers for libc-bin (2.41-6ubuntu1) ... 122s Processing triggers for man-db (2.13.0-1) ... 123s Processing triggers for install-info (7.1.1-1) ... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s Starting pkgProblemResolver with broken count: 0 125s Starting 2 pkgProblemResolver with broken count: 0 125s Done 125s Solving dependencies... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s autopkgtest [12:36:29]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 129s autopkgtest [12:36:29]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi 135s Get:1 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (dsc) [3091 B] 135s Get:2 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (tar) [17.8 MB] 135s Get:3 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (diff) [11.9 kB] 135s gpgv: Signature made Tue Mar 4 15:47:17 2025 UTC 135s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 135s gpgv: Can't check signature: No public key 135s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-3build1.dsc: no acceptable signature found 137s autopkgtest [12:36:37]: testing package gudhi version 3.10.1+dfsg-3build1 137s autopkgtest [12:36:37]: build not needed 142s autopkgtest [12:36:42]: test python-upstream.sh: preparing testbed 142s Reading package lists... 143s Building dependency tree... 143s Reading state information... 143s Starting pkgProblemResolver with broken count: 0 143s Starting 2 pkgProblemResolver with broken count: 0 143s Done 144s The following NEW packages will be installed: 144s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 144s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 144s libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 144s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 144s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 144s libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 144s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 144s python3-brotli python3-contourpy python3-cycler python3-dateutil 144s python3-decorator python3-eagerpy python3-fonttools python3-fs python3-gudhi 144s python3-iniconfig python3-joblib python3-kiwisolver python3-lxml python3-lz4 144s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 144s python3-packaging python3-pil python3-pil.imagetk python3-platformdirs 144s python3-pluggy python3-pot python3-pytest python3-scipy python3-sklearn 144s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 144s python3-ufolib2 python3.13-tk tk8.6-blt2.5 unicode-data x11-common 144s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 78.2 MB of archives. 144s After this operation, 324 MB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 145s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 145s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 145s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 145s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 145s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 145s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 145s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 145s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 145s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 145s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 145s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 145s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 145s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 145s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 146s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 146s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 146s Get:18 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 146s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 146s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 146s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 146s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 146s Get:23 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 146s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 146s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 146s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 146s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 146s Get:28 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 146s Get:29 http://ftpmaster.internal/ubuntu questing/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 146s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 146s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 146s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 146s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 146s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 146s Get:35 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 146s Get:36 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 146s Get:37 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 146s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 146s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 146s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 146s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 146s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 146s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu4 [168 kB] 146s Get:44 http://ftpmaster.internal/ubuntu questing/universe arm64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 146s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 146s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 146s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 146s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 146s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 146s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 146s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-eagerpy all 0.30.0-3 [19.0 kB] 146s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 146s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 146s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 python3-lxml arm64 5.3.2-1 [1258 kB] 146s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 146s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 147s Get:57 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 147s Get:58 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 147s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 147s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 147s Get:61 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 147s Get:62 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-gudhi arm64 3.10.1+dfsg-3build1 [2001 kB] 147s Get:63 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 147s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 147s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 147s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 147s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 147s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 python3.13-tk arm64 3.13.3-1 [106 kB] 147s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tk arm64 3.13.3-1 [9856 B] 147s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 147s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 python3-packaging all 24.2-1 [51.5 kB] 148s Get:72 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-matplotlib arm64 3.8.3-7build1 [17.3 MB] 148s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 148s Get:74 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pot arm64 0.9.5+dfsg-1 [238 kB] 148s Get:75 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python3-pytest all 8.3.5-2 [252 kB] 148s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 148s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB] 148s Get:78 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 149s Fetched 78.2 MB in 4s (19.1 MB/s) 149s Selecting previously unselected package python3-numpy-dev:arm64. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 149s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 149s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 149s Selecting previously unselected package libblas3:arm64. 149s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 149s Unpacking libblas3:arm64 (3.12.1-2) ... 149s Selecting previously unselected package libgfortran5:arm64. 149s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 149s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 149s Selecting previously unselected package liblapack3:arm64. 149s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 149s Unpacking liblapack3:arm64 (3.12.1-2) ... 149s Selecting previously unselected package python3-numpy. 149s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 149s Unpacking python3-numpy (1:2.2.3+ds-5) ... 150s Selecting previously unselected package libtcl8.6:arm64. 150s Preparing to unpack .../05-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 150s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 150s Selecting previously unselected package fonts-dejavu-mono. 150s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 150s Unpacking fonts-dejavu-mono (2.37-8) ... 150s Selecting previously unselected package fonts-dejavu-core. 150s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 150s Unpacking fonts-dejavu-core (2.37-8) ... 150s Selecting previously unselected package fontconfig-config. 150s Preparing to unpack .../08-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 150s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 150s Selecting previously unselected package libfontconfig1:arm64. 150s Preparing to unpack .../09-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 150s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 150s Selecting previously unselected package libxrender1:arm64. 150s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 150s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 150s Selecting previously unselected package libxft2:arm64. 150s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 150s Unpacking libxft2:arm64 (2.3.6-1build1) ... 150s Selecting previously unselected package x11-common. 150s Preparing to unpack .../12-x11-common_1%3a7.7+23ubuntu4_all.deb ... 150s Unpacking x11-common (1:7.7+23ubuntu4) ... 151s Selecting previously unselected package libxss1:arm64. 151s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 151s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 151s Selecting previously unselected package libtk8.6:arm64. 151s Preparing to unpack .../14-libtk8.6_8.6.16-1_arm64.deb ... 151s Unpacking libtk8.6:arm64 (8.6.16-1) ... 151s Selecting previously unselected package tk8.6-blt2.5. 151s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 151s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 151s Selecting previously unselected package blt. 151s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 151s Unpacking blt (2.5.3+dfsg-8) ... 151s Selecting previously unselected package fonts-lyx. 151s Preparing to unpack .../17-fonts-lyx_2.4.3-1_all.deb ... 151s Unpacking fonts-lyx (2.4.3-1) ... 151s Selecting previously unselected package libdeflate0:arm64. 151s Preparing to unpack .../18-libdeflate0_1.23-1_arm64.deb ... 151s Unpacking libdeflate0:arm64 (1.23-1) ... 151s Selecting previously unselected package libgomp1:arm64. 151s Preparing to unpack .../19-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 151s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 151s Selecting previously unselected package libgraphite2-3:arm64. 151s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 151s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 151s Selecting previously unselected package libharfbuzz0b:arm64. 151s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_arm64.deb ... 151s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 151s Selecting previously unselected package libhwloc15:arm64. 151s Preparing to unpack .../22-libhwloc15_2.12.0-1_arm64.deb ... 151s Unpacking libhwloc15:arm64 (2.12.0-1) ... 151s Selecting previously unselected package libimagequant0:arm64. 151s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 151s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 151s Selecting previously unselected package libjpeg-turbo8:arm64. 151s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 151s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 151s Selecting previously unselected package libjpeg8:arm64. 151s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 151s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 151s Selecting previously unselected package libjs-jquery. 151s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 151s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Selecting previously unselected package libjs-jquery-ui. 151s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 151s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 152s Selecting previously unselected package liblbfgsb0:arm64. 152s Preparing to unpack .../28-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 152s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 152s Selecting previously unselected package liblcms2-2:arm64. 152s 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libtbbbind-2-5:arm64 (2022.0.0-2) ... 152s Selecting previously unselected package libtbbmalloc2:arm64. 152s Preparing to unpack .../35-libtbbmalloc2_2022.0.0-2_arm64.deb ... 152s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 152s Selecting previously unselected package libtbb12:arm64. 152s Preparing to unpack .../36-libtbb12_2022.0.0-2_arm64.deb ... 152s Unpacking libtbb12:arm64 (2022.0.0-2) ... 152s Selecting previously unselected package libjbig0:arm64. 152s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 152s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 152s Selecting previously unselected package libwebp7:arm64. 152s Preparing to unpack .../38-libwebp7_1.5.0-0.1_arm64.deb ... 152s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 152s Selecting previously unselected package libtiff6:arm64. 152s Preparing to unpack .../39-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 152s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 152s Selecting previously unselected package libwebpdemux2:arm64. 152s Preparing to unpack .../40-libwebpdemux2_1.5.0-0.1_arm64.deb ... 152s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 152s Selecting previously unselected package libwebpmux3:arm64. 152s Preparing to unpack .../41-libwebpmux3_1.5.0-0.1_arm64.deb ... 152s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 152s Selecting previously unselected package libxslt1.1:arm64. 152s Preparing to unpack .../42-libxslt1.1_1.1.39-0exp1ubuntu4_arm64.deb ... 152s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 152s Selecting previously unselected package python-matplotlib-data. 152s Preparing to unpack .../43-python-matplotlib-data_3.8.3-7build1_all.deb ... 152s Unpacking python-matplotlib-data (3.8.3-7build1) ... 153s Selecting previously unselected package python3-all. 153s Preparing to unpack .../44-python3-all_3.13.3-1_arm64.deb ... 153s Unpacking python3-all (3.13.3-1) ... 153s Selecting previously unselected package python3-brotli. 153s Preparing to unpack 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python3-sklearn (1.4.2+dfsg-8) ... 157s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 157s Setting up liblcms2-2:arm64 (2.16-2) ... 157s Setting up python3-iniconfig (1.1.1-2) ... 157s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 157s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 157s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 157s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 157s Setting up python3-joblib (1.4.2-3) ... 158s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 158s Setting up fonts-lyx (2.4.3-1) ... 158s Setting up python3-threadpoolctl (3.1.0-1) ... 158s Setting up x11-common (1:7.7+23ubuntu4) ... 159s Setting up libdeflate0:arm64 (1.23-1) ... 159s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 159s Setting up python3-all (3.13.3-1) ... 159s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 159s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 159s Setting up python3-platformdirs (4.3.6-1) ... 159s Setting up python3-fs (2.4.16-7) ... 160s Setting up unicode-data (15.1.0-1) ... 160s Setting up python3-decorator (5.1.1-5) ... 160s Setting up libblas3:arm64 (3.12.1-2) ... 160s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 160s Setting up python3-packaging (24.2-1) ... 160s Setting up python3-brotli (1.1.0-2build4) ... 160s Setting up python3-cycler (0.12.1-1) ... 161s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 161s Setting up fonts-dejavu-mono (2.37-8) ... 161s Setting up python3-kiwisolver (1.4.7-3build1) ... 161s Setting up libhwloc15:arm64 (2.12.0-1) ... 161s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 161s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 161s Setting up fonts-dejavu-core (2.37-8) ... 161s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 161s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 161s Setting up python3-pluggy (1.5.0-1) ... 161s Setting up libwebp7:arm64 (1.5.0-0.1) ... 161s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 161s Setting up libopenjp2-7:arm64 (2.5.3-2) ... 161s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 161s Setting up python3-dateutil (2.9.0-4) ... 161s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 161s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 162s Setting up python3-mpmath (1.3.0-1) ... 162s Setting up python-matplotlib-data (3.8.3-7build1) ... 162s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 162s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 162s Setting up python3-sympy (1.13.3-5) ... 171s Setting up liblapack3:arm64 (3.12.1-2) ... 171s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 171s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 171s Setting up python3-pytest (8.3.5-2) ... 172s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 172s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 172s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 172s Setting up libraqm0:arm64 (0.10.2-1) ... 172s Setting up python3-numpy (1:2.2.3+ds-5) ... 175s Setting up python3-lxml:arm64 (5.3.2-1) ... 175s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 175s Setting up python3-contourpy (1.3.1-1build1) ... 176s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 176s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 176s Setting up libxft2:arm64 (2.3.6-1build1) ... 176s Setting up python3-scipy (1.14.1-4ubuntu2) ... 181s Setting up python3-pot (0.9.5+dfsg-1) ... 182s /usr/lib/python3/dist-packages/ot/unbalanced/_lbfgs.py:38: SyntaxWarning: invalid escape sequence '\m' 182s If None, then use :math:`\mathbf{c} = \mathbf{a} \mathbf{b}^T`. 182s Setting up libtk8.6:arm64 (8.6.16-1) ... 182s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 182s Setting up libtbb12:arm64 (2022.0.0-2) ... 182s Setting up python3.13-tk (3.13.3-1) ... 182s Setting up python3-pil:arm64 (11.1.0-5build1) ... 182s Setting up python3-eagerpy (0.30.0-3) ... 183s Setting up python3-sklearn (1.4.2+dfsg-8) ... 186s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 186s Setting up blt (2.5.3+dfsg-8) ... 186s Setting up python3-tk:arm64 (3.13.3-1) ... 186s Setting up python3-gudhi (3.10.1+dfsg-3build1) ... 186s Setting up python3-pil.imagetk:arm64 (11.1.0-5build1) ... 186s Setting up python3-fonttools (4.55.3-2build1) ... 188s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 188s Setting up python3-matplotlib (3.8.3-7build1) ... 191s Processing triggers for libc-bin (2.41-6ubuntu1) ... 191s Processing triggers for man-db (2.13.0-1) ... 192s autopkgtest [12:37:32]: test python-upstream.sh: [----------------------- 193s Running tests with Python 3.13. 196s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py'] 196s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py'] 196s ============================= test session starts ============================== 196s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 196s rootdir: /tmp/autopkgtest.mU6jsf/autopkgtest_tmp 196s plugins: typeguard-4.4.2 196s collected 158 items / 31 deselected / 127 selected 196s 196s test/test_alpha_complex.py ............. [ 10%] 197s test/test_betti_curve_representations.py .... [ 13%] 197s test/test_bottleneck_distance.py . [ 14%] 197s test/test_collapse_edges.py .. [ 15%] 197s test/test_cover_complex.py ....... [ 21%] 197s test/test_cubical_complex.py .................. [ 35%] 197s test/test_datasets_generators.py .. [ 37%] 197s test/test_dtm_rips_complex.py ... [ 39%] 197s test/test_euclidean_witness_complex.py .... [ 42%] 197s test/test_off.py .... [ 45%] 197s test/test_persistence_graphical_tools.py ...... [ 50%] 197s test/test_reader_utils.py ...... [ 55%] 197s test/test_representations_preprocessing.py . [ 55%] 197s test/test_rips_complex.py ....... [ 61%] 197s test/test_simplex_generators.py ... [ 63%] 197s test/test_simplex_tree.py .................... [ 79%] 197s test/test_simplex_tree_serialization.py .. [ 81%] 197s test/test_sklearn_cubical_persistence.py ... [ 83%] 199s test/test_sklearn_rips_persistence.py .... [ 86%] 199s test/test_subsampling.py ..... [ 90%] 199s test/test_tangential_complex.py . [ 91%] 199s test/test_time_delay.py . [ 92%] 199s test/test_tomato.py .. [ 93%] 199s test/test_wasserstein_barycenter.py . [ 94%] 199s test/test_weighted_rips_complex.py .... [ 97%] 199s test/test_witness_complex.py ... [100%] 199s 199s =============================== warnings summary =============================== 199s test/test_persistence_graphical_tools.py::test_limit_plot_persistence 199s /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:107: UserWarning: usetex mode requires TeX. 199s warnings.warn("usetex mode requires TeX.") 199s 199s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter 199s /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:61: UserWarning: Computing barycenter of empty diag set. Returns None. 199s warnings.warn("Computing barycenter of empty diag set. Returns None.") 199s 199s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 199s ================ 127 passed, 31 deselected, 2 warnings in 5.74s ================ 199s ********** 200s autopkgtest [12:37:40]: test python-upstream.sh: -----------------------] 200s autopkgtest [12:37:40]: test python-upstream.sh: - - - - - - - - - - results - - - - - - - - - - 200s python-upstream.sh PASS 201s autopkgtest [12:37:41]: @@@@@@@@@@@@@@@@@@@@ summary 201s python-upstream.sh PASS 219s nova [W] Using flock in prodstack6-arm64 219s Creating nova instance adt-questing-arm64-gudhi-20250502-123420-juju-7f2275-prod-proposed-migration-environment-23-e9115921-f20e-4282-929f-60f2835bb1b2 from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 219s nova [W] Timed out waiting for 70465a02-73ae-4525-a44b-2818f6668a88 to get deleted.