0s autopkgtest [10:22:00]: starting date and time: 2025-05-02 10:22:00+0000 0s autopkgtest [10:22:00]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [10:22:00]: host juju-7f2275-prod-proposed-migration-environment-21; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9sz93j0g/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.10.1+dfsg1-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-21@bos03-arm64-6.secgroup --name adt-questing-arm64-gudhi-20250502-102200-juju-7f2275-prod-proposed-migration-environment-21-98211a8c-d13f-460f-9a24-4b4f359dc8d7 --image adt/ubuntu-questing-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-21 --net-id=net_prod-proposed-migration -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 123s autopkgtest [10:24:03]: testbed dpkg architecture: arm64 123s autopkgtest [10:24:03]: testbed apt version: 3.0.0 124s autopkgtest [10:24:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 124s autopkgtest [10:24:04]: testbed release detected to be: None 124s autopkgtest [10:24:04]: updating testbed package index (apt update) 125s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 125s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 125s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 125s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [2076 kB] 126s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [44.4 kB] 126s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [175 kB] 126s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main arm64 Packages [219 kB] 126s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 Packages [1509 kB] 126s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/multiverse arm64 Packages [15.4 kB] 126s Fetched 4149 kB in 1s (3242 kB/s) 127s Reading package lists... 127s autopkgtest [10:24:07]: upgrading testbed (apt dist-upgrade and autopurge) 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 130s Entering ResolveByKeep 131s 131s Calculating upgrade... 132s The following packages will be upgraded: 132s htop mtd-utils nano 132s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Need to get 936 kB of archives. 132s After this operation, 727 kB of additional disk space will be used. 132s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 nano arm64 8.4-1 [290 kB] 132s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 htop arm64 3.4.1-4 [177 kB] 132s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 mtd-utils arm64 1:2.3.0-1ubuntu1 [469 kB] 133s Fetched 936 kB in 1s (1676 kB/s) 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117820 files and directories currently installed.) 133s Preparing to unpack .../archives/nano_8.4-1_arm64.deb ... 133s Unpacking nano (8.4-1) over (8.3-1) ... 133s Preparing to unpack .../htop_3.4.1-4_arm64.deb ... 133s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 133s Preparing to unpack .../mtd-utils_1%3a2.3.0-1ubuntu1_arm64.deb ... 133s Unpacking mtd-utils (1:2.3.0-1ubuntu1) over (1:2.2.0-2ubuntu2) ... 133s Setting up htop (3.4.1-4) ... 133s Setting up mtd-utils (1:2.3.0-1ubuntu1) ... 133s Setting up nano (8.4-1) ... 133s Installing new version of config file /etc/nanorc ... 133s Processing triggers for man-db (2.13.0-1) ... 135s Processing triggers for install-info (7.1.1-1) ... 135s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Starting pkgProblemResolver with broken count: 0 136s Starting 2 pkgProblemResolver with broken count: 0 136s Done 137s Solving dependencies... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 140s autopkgtest [10:24:20]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 14:37:51 UTC 2025 140s autopkgtest [10:24:20]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi 144s Get:1 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (dsc) [3091 B] 144s Get:2 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (tar) [17.8 MB] 144s Get:3 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (diff) [11.9 kB] 145s gpgv: Signature made Tue Mar 4 15:47:17 2025 UTC 145s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 145s gpgv: Can't check signature: No public key 145s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-3build1.dsc: no acceptable signature found 146s autopkgtest [10:24:26]: testing package gudhi version 3.10.1+dfsg-3build1 146s autopkgtest [10:24:26]: build not needed 150s autopkgtest [10:24:30]: test python-upstream.sh: preparing testbed 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Starting pkgProblemResolver with broken count: 0 151s Starting 2 pkgProblemResolver with broken count: 0 151s Done 151s The following NEW packages will be installed: 151s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 151s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 151s libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 151s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 151s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 151s libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 151s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 151s python3-brotli python3-contourpy python3-cycler python3-dateutil 151s python3-decorator python3-eagerpy python3-fonttools python3-fs python3-gudhi 151s python3-iniconfig python3-joblib python3-kiwisolver python3-lxml python3-lz4 151s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 151s python3-packaging python3-pil python3-pil.imagetk python3-platformdirs 151s python3-pluggy python3-pot python3-pytest python3-scipy python3-sklearn 151s python3-sklearn-lib python3-sympy python3-threadpoolctl python3-tk 151s python3-ufolib2 python3.13-tk tk8.6-blt2.5 unicode-data x11-common 152s 0 upgraded, 78 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 78.9 MB of archives. 152s After this operation, 326 MB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy-dev arm64 1:2.2.3+ds-5 [146 kB] 152s Get:2 http://ftpmaster.internal/ubuntu questing/main arm64 libblas3 arm64 3.12.1-2 [161 kB] 152s Get:3 http://ftpmaster.internal/ubuntu questing/main arm64 libgfortran5 arm64 15-20250404-0ubuntu1 [444 kB] 152s Get:4 http://ftpmaster.internal/ubuntu questing/main arm64 liblapack3 arm64 3.12.1-2 [2307 kB] 152s Get:5 http://ftpmaster.internal/ubuntu questing/main arm64 python3-numpy arm64 1:2.2.3+ds-5 [3981 kB] 152s Get:6 http://ftpmaster.internal/ubuntu questing/main arm64 libtcl8.6 arm64 8.6.16+dfsg-1 [987 kB] 152s Get:7 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 152s Get:8 http://ftpmaster.internal/ubuntu questing/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 152s Get:9 http://ftpmaster.internal/ubuntu questing/main arm64 fontconfig-config arm64 2.15.0-2.2ubuntu1 [37.9 kB] 152s Get:10 http://ftpmaster.internal/ubuntu questing/main arm64 libfontconfig1 arm64 2.15.0-2.2ubuntu1 [144 kB] 152s Get:11 http://ftpmaster.internal/ubuntu questing/main arm64 libxrender1 arm64 1:0.9.10-1.1build1 [18.8 kB] 152s Get:12 http://ftpmaster.internal/ubuntu questing/main arm64 libxft2 arm64 2.3.6-1build1 [44.1 kB] 152s Get:13 http://ftpmaster.internal/ubuntu questing/main arm64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 152s Get:14 http://ftpmaster.internal/ubuntu questing/main arm64 libxss1 arm64 1:1.2.3-1build3 [7244 B] 152s Get:15 http://ftpmaster.internal/ubuntu questing/main arm64 libtk8.6 arm64 8.6.16-1 [776 kB] 152s Get:16 http://ftpmaster.internal/ubuntu questing/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-8 [624 kB] 152s Get:17 http://ftpmaster.internal/ubuntu questing/main arm64 blt arm64 2.5.3+dfsg-8 [4824 B] 152s Get:18 http://ftpmaster.internal/ubuntu questing/universe arm64 fonts-lyx all 2.4.3-1 [171 kB] 152s Get:19 http://ftpmaster.internal/ubuntu questing/main arm64 libdeflate0 arm64 1.23-1 [46.2 kB] 152s Get:20 http://ftpmaster.internal/ubuntu questing/main arm64 libgomp1 arm64 15-20250404-0ubuntu1 [147 kB] 152s Get:21 http://ftpmaster.internal/ubuntu questing/main arm64 libgraphite2-3 arm64 1.3.14-2ubuntu1 [70.6 kB] 152s Get:22 http://ftpmaster.internal/ubuntu questing/main arm64 libharfbuzz0b arm64 10.2.0-1 [490 kB] 152s Get:23 http://ftpmaster.internal/ubuntu questing/universe arm64 libhwloc15 arm64 2.12.0-1 [162 kB] 152s Get:24 http://ftpmaster.internal/ubuntu questing/main arm64 libimagequant0 arm64 2.18.0-1build1 [37.1 kB] 152s Get:25 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg-turbo8 arm64 2.1.5-3ubuntu2 [165 kB] 152s Get:26 http://ftpmaster.internal/ubuntu questing/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 152s Get:27 http://ftpmaster.internal/ubuntu questing/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 153s Get:28 http://ftpmaster.internal/ubuntu questing/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 153s Get:29 http://ftpmaster.internal/ubuntu questing/universe arm64 liblbfgsb0 arm64 3.0+dfsg.4-1build1 [27.7 kB] 153s Get:30 http://ftpmaster.internal/ubuntu questing/main arm64 liblcms2-2 arm64 2.16-2 [170 kB] 153s Get:31 http://ftpmaster.internal/ubuntu questing/main arm64 liblerc4 arm64 4.0.0+ds-5ubuntu1 [167 kB] 153s Get:32 http://ftpmaster.internal/ubuntu questing/universe arm64 libqhull-r8.0 arm64 2020.2-6build1 [189 kB] 153s Get:33 http://ftpmaster.internal/ubuntu questing/main arm64 libraqm0 arm64 0.10.2-1 [14.9 kB] 153s Get:34 http://ftpmaster.internal/ubuntu questing/main arm64 libsharpyuv0 arm64 1.5.0-0.1 [16.9 kB] 153s Get:35 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbbind-2-5 arm64 2022.0.0-2 [15.1 kB] 153s Get:36 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbbmalloc2 arm64 2022.0.0-2 [38.9 kB] 153s Get:37 http://ftpmaster.internal/ubuntu questing/universe arm64 libtbb12 arm64 2022.0.0-2 [71.3 kB] 153s Get:38 http://ftpmaster.internal/ubuntu questing/main arm64 libjbig0 arm64 2.1-6.1ubuntu2 [29.3 kB] 153s Get:39 http://ftpmaster.internal/ubuntu questing/main arm64 libwebp7 arm64 1.5.0-0.1 [194 kB] 153s Get:40 http://ftpmaster.internal/ubuntu questing/main arm64 libtiff6 arm64 4.5.1+git230720-4ubuntu4 [193 kB] 153s Get:41 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpdemux2 arm64 1.5.0-0.1 [12.5 kB] 153s Get:42 http://ftpmaster.internal/ubuntu questing/main arm64 libwebpmux3 arm64 1.5.0-0.1 [25.4 kB] 153s Get:43 http://ftpmaster.internal/ubuntu questing/main arm64 libxslt1.1 arm64 1.1.39-0exp1ubuntu4 [168 kB] 153s Get:44 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python-matplotlib-data all 3.10.1+dfsg1-3 [2936 kB] 153s Get:45 http://ftpmaster.internal/ubuntu questing/main arm64 python3-all arm64 3.13.3-1 [880 B] 153s Get:46 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-brotli arm64 1.1.0-2build4 [342 kB] 153s Get:47 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-contourpy arm64 1.3.1-1build1 [182 kB] 153s Get:48 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-cycler all 0.12.1-1 [9716 B] 153s Get:49 http://ftpmaster.internal/ubuntu questing/main arm64 python3-dateutil all 2.9.0-4 [80.3 kB] 153s Get:50 http://ftpmaster.internal/ubuntu questing/main arm64 python3-decorator all 5.1.1-5 [10.1 kB] 153s Get:51 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-eagerpy all 0.30.0-3 [19.0 kB] 153s Get:52 http://ftpmaster.internal/ubuntu questing/main arm64 python3-platformdirs all 4.3.6-1 [16.8 kB] 153s Get:53 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fs all 2.4.16-7 [90.8 kB] 153s Get:54 http://ftpmaster.internal/ubuntu questing/main arm64 python3-lxml arm64 5.3.2-1 [1258 kB] 153s Get:55 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-lz4 arm64 4.4.0+dfsg-1build1 [27.1 kB] 153s Get:56 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-scipy arm64 1.14.1-4ubuntu2 [16.7 MB] 153s Get:57 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-mpmath all 1.3.0-1 [425 kB] 153s Get:58 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sympy all 1.13.3-5 [4229 kB] 153s Get:59 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 153s Get:60 http://ftpmaster.internal/ubuntu questing/universe arm64 unicode-data all 15.1.0-1 [8878 kB] 154s Get:61 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-fonttools arm64 4.55.3-2build1 [1466 kB] 154s Get:62 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-gudhi arm64 3.10.1+dfsg-3build1 [2001 kB] 154s Get:63 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-iniconfig all 1.1.1-2 [6024 B] 154s Get:64 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-joblib all 1.4.2-3 [205 kB] 154s Get:65 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-kiwisolver arm64 1.4.7-3build1 [50.7 kB] 154s Get:66 http://ftpmaster.internal/ubuntu questing/main arm64 libopenjp2-7 arm64 2.5.3-2 [183 kB] 154s Get:67 http://ftpmaster.internal/ubuntu questing/main arm64 python3-pil arm64 11.1.0-5build1 [463 kB] 154s Get:68 http://ftpmaster.internal/ubuntu questing/main arm64 python3.13-tk arm64 3.13.3-1 [106 kB] 154s Get:69 http://ftpmaster.internal/ubuntu questing/main arm64 python3-tk arm64 3.13.3-1 [9856 B] 154s Get:70 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pil.imagetk arm64 11.1.0-5build1 [9892 B] 154s Get:71 http://ftpmaster.internal/ubuntu questing/main arm64 python3-packaging all 24.2-1 [51.5 kB] 154s Get:72 http://ftpmaster.internal/ubuntu questing-proposed/universe arm64 python3-matplotlib arm64 3.10.1+dfsg1-3 [18.0 MB] 155s Get:73 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pluggy all 1.5.0-1 [21.0 kB] 155s Get:74 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pot arm64 0.9.5+dfsg-1 [238 kB] 155s Get:75 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-pytest all 8.3.5-1 [252 kB] 155s Get:76 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 155s Get:77 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sklearn-lib arm64 1.4.2+dfsg-8 [4109 kB] 155s Get:78 http://ftpmaster.internal/ubuntu questing/universe arm64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 155s Fetched 78.9 MB in 3s (24.0 MB/s) 155s Selecting previously unselected package python3-numpy-dev:arm64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 117821 files and directories currently installed.) 155s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_arm64.deb ... 155s Unpacking python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 155s Selecting previously unselected package libblas3:arm64. 155s Preparing to unpack .../01-libblas3_3.12.1-2_arm64.deb ... 155s Unpacking libblas3:arm64 (3.12.1-2) ... 156s Selecting previously unselected package libgfortran5:arm64. 156s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_arm64.deb ... 156s Unpacking libgfortran5:arm64 (15-20250404-0ubuntu1) ... 156s Selecting previously unselected package liblapack3:arm64. 156s Preparing to unpack .../03-liblapack3_3.12.1-2_arm64.deb ... 156s Unpacking liblapack3:arm64 (3.12.1-2) ... 156s Selecting previously unselected package python3-numpy. 156s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_arm64.deb ... 156s Unpacking python3-numpy (1:2.2.3+ds-5) ... 156s Selecting previously unselected package libtcl8.6:arm64. 156s Preparing to unpack .../05-libtcl8.6_8.6.16+dfsg-1_arm64.deb ... 156s Unpacking libtcl8.6:arm64 (8.6.16+dfsg-1) ... 156s Selecting previously unselected package fonts-dejavu-mono. 156s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 156s Unpacking fonts-dejavu-mono (2.37-8) ... 156s Selecting previously unselected package fonts-dejavu-core. 156s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 156s Unpacking fonts-dejavu-core (2.37-8) ... 156s Selecting previously unselected package fontconfig-config. 156s Preparing to unpack .../08-fontconfig-config_2.15.0-2.2ubuntu1_arm64.deb ... 156s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 156s Selecting previously unselected package libfontconfig1:arm64. 157s Preparing to unpack .../09-libfontconfig1_2.15.0-2.2ubuntu1_arm64.deb ... 157s Unpacking libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 157s Selecting previously unselected package libxrender1:arm64. 157s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_arm64.deb ... 157s Unpacking libxrender1:arm64 (1:0.9.10-1.1build1) ... 157s Selecting previously unselected package libxft2:arm64. 157s Preparing to unpack .../11-libxft2_2.3.6-1build1_arm64.deb ... 157s Unpacking libxft2:arm64 (2.3.6-1build1) ... 157s Selecting previously unselected package x11-common. 157s Preparing to unpack .../12-x11-common_1%3a7.7+23ubuntu4_all.deb ... 157s Unpacking x11-common (1:7.7+23ubuntu4) ... 157s Selecting previously unselected package libxss1:arm64. 157s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build3_arm64.deb ... 157s Unpacking libxss1:arm64 (1:1.2.3-1build3) ... 157s Selecting previously unselected package libtk8.6:arm64. 157s Preparing to unpack .../14-libtk8.6_8.6.16-1_arm64.deb ... 157s Unpacking libtk8.6:arm64 (8.6.16-1) ... 157s Selecting previously unselected package tk8.6-blt2.5. 157s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-8_arm64.deb ... 157s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 157s Selecting previously unselected package blt. 157s Preparing to unpack .../16-blt_2.5.3+dfsg-8_arm64.deb ... 157s Unpacking blt (2.5.3+dfsg-8) ... 157s Selecting previously unselected package fonts-lyx. 157s Preparing to unpack .../17-fonts-lyx_2.4.3-1_all.deb ... 157s Unpacking fonts-lyx (2.4.3-1) ... 157s Selecting previously unselected package libdeflate0:arm64. 157s Preparing to unpack .../18-libdeflate0_1.23-1_arm64.deb ... 157s Unpacking libdeflate0:arm64 (1.23-1) ... 157s Selecting previously unselected package libgomp1:arm64. 157s Preparing to unpack .../19-libgomp1_15-20250404-0ubuntu1_arm64.deb ... 157s Unpacking libgomp1:arm64 (15-20250404-0ubuntu1) ... 157s Selecting previously unselected package libgraphite2-3:arm64. 157s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_arm64.deb ... 157s Unpacking libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 157s Selecting previously unselected package libharfbuzz0b:arm64. 157s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_arm64.deb ... 157s Unpacking libharfbuzz0b:arm64 (10.2.0-1) ... 157s Selecting previously unselected package libhwloc15:arm64. 157s Preparing to unpack .../22-libhwloc15_2.12.0-1_arm64.deb ... 157s Unpacking libhwloc15:arm64 (2.12.0-1) ... 157s Selecting previously unselected package libimagequant0:arm64. 157s Preparing to unpack .../23-libimagequant0_2.18.0-1build1_arm64.deb ... 157s Unpacking libimagequant0:arm64 (2.18.0-1build1) ... 157s Selecting previously unselected package libjpeg-turbo8:arm64. 157s Preparing to unpack .../24-libjpeg-turbo8_2.1.5-3ubuntu2_arm64.deb ... 157s Unpacking libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 157s Selecting previously unselected package libjpeg8:arm64. 157s Preparing to unpack .../25-libjpeg8_8c-2ubuntu11_arm64.deb ... 157s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 157s Selecting previously unselected package libjs-jquery. 157s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 158s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 158s Selecting previously unselected package libjs-jquery-ui. 158s Preparing to unpack .../27-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 158s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 158s Selecting previously unselected package liblbfgsb0:arm64. 158s Preparing to unpack .../28-liblbfgsb0_3.0+dfsg.4-1build1_arm64.deb ... 158s Unpacking liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 158s Selecting previously unselected package liblcms2-2:arm64. 158s Preparing to unpack .../29-liblcms2-2_2.16-2_arm64.deb ... 158s Unpacking liblcms2-2:arm64 (2.16-2) ... 158s Selecting previously unselected package liblerc4:arm64. 158s Preparing to unpack .../30-liblerc4_4.0.0+ds-5ubuntu1_arm64.deb ... 158s Unpacking liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 158s Selecting previously unselected package libqhull-r8.0:arm64. 158s Preparing to unpack .../31-libqhull-r8.0_2020.2-6build1_arm64.deb ... 158s Unpacking libqhull-r8.0:arm64 (2020.2-6build1) ... 158s Selecting previously unselected package libraqm0:arm64. 158s Preparing to unpack .../32-libraqm0_0.10.2-1_arm64.deb ... 158s Unpacking libraqm0:arm64 (0.10.2-1) ... 158s Selecting previously unselected package libsharpyuv0:arm64. 158s Preparing to unpack .../33-libsharpyuv0_1.5.0-0.1_arm64.deb ... 158s Unpacking libsharpyuv0:arm64 (1.5.0-0.1) ... 158s Selecting previously unselected package libtbbbind-2-5:arm64. 158s Preparing to unpack .../34-libtbbbind-2-5_2022.0.0-2_arm64.deb ... 158s Unpacking libtbbbind-2-5:arm64 (2022.0.0-2) ... 158s Selecting previously unselected package libtbbmalloc2:arm64. 158s Preparing to unpack .../35-libtbbmalloc2_2022.0.0-2_arm64.deb ... 158s Unpacking libtbbmalloc2:arm64 (2022.0.0-2) ... 158s Selecting previously unselected package libtbb12:arm64. 158s Preparing to unpack .../36-libtbb12_2022.0.0-2_arm64.deb ... 158s Unpacking libtbb12:arm64 (2022.0.0-2) ... 158s Selecting previously unselected package libjbig0:arm64. 158s Preparing to unpack .../37-libjbig0_2.1-6.1ubuntu2_arm64.deb ... 158s Unpacking libjbig0:arm64 (2.1-6.1ubuntu2) ... 158s Selecting previously unselected package libwebp7:arm64. 158s Preparing to unpack .../38-libwebp7_1.5.0-0.1_arm64.deb ... 158s Unpacking libwebp7:arm64 (1.5.0-0.1) ... 158s Selecting previously unselected package libtiff6:arm64. 158s Preparing to unpack .../39-libtiff6_4.5.1+git230720-4ubuntu4_arm64.deb ... 158s Unpacking libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 158s Selecting previously unselected package libwebpdemux2:arm64. 158s Preparing to unpack .../40-libwebpdemux2_1.5.0-0.1_arm64.deb ... 158s Unpacking libwebpdemux2:arm64 (1.5.0-0.1) ... 159s Selecting previously unselected package libwebpmux3:arm64. 159s Preparing to unpack .../41-libwebpmux3_1.5.0-0.1_arm64.deb ... 159s Unpacking libwebpmux3:arm64 (1.5.0-0.1) ... 159s Selecting previously unselected package libxslt1.1:arm64. 159s Preparing to unpack .../42-libxslt1.1_1.1.39-0exp1ubuntu4_arm64.deb ... 159s Unpacking libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 159s Selecting previously unselected package python-matplotlib-data. 159s Preparing to unpack .../43-python-matplotlib-data_3.10.1+dfsg1-3_all.deb ... 159s Unpacking python-matplotlib-data (3.10.1+dfsg1-3) ... 159s Selecting previously unselected package python3-all. 159s Preparing to unpack .../44-python3-all_3.13.3-1_arm64.deb ... 159s Unpacking python3-all (3.13.3-1) ... 159s Selecting previously unselected package python3-brotli. 159s Preparing to unpack .../45-python3-brotli_1.1.0-2build4_arm64.deb ... 159s Unpacking python3-brotli (1.1.0-2build4) ... 159s Selecting previously unselected package python3-contourpy. 159s Preparing to unpack .../46-python3-contourpy_1.3.1-1build1_arm64.deb ... 159s Unpacking python3-contourpy (1.3.1-1build1) ... 159s Selecting previously unselected package python3-cycler. 159s Preparing to unpack .../47-python3-cycler_0.12.1-1_all.deb ... 159s Unpacking python3-cycler (0.12.1-1) ... 159s Selecting previously unselected package python3-dateutil. 159s Preparing to unpack .../48-python3-dateutil_2.9.0-4_all.deb ... 159s Unpacking python3-dateutil (2.9.0-4) ... 159s Selecting previously unselected package python3-decorator. 159s Preparing to unpack .../49-python3-decorator_5.1.1-5_all.deb ... 159s Unpacking python3-decorator (5.1.1-5) ... 159s Selecting previously unselected package python3-eagerpy. 159s Preparing to unpack .../50-python3-eagerpy_0.30.0-3_all.deb ... 159s Unpacking python3-eagerpy (0.30.0-3) ... 159s Selecting previously unselected package python3-platformdirs. 159s Preparing to unpack .../51-python3-platformdirs_4.3.6-1_all.deb ... 159s Unpacking python3-platformdirs (4.3.6-1) ... 159s Selecting previously unselected package python3-fs. 160s Preparing to unpack .../52-python3-fs_2.4.16-7_all.deb ... 160s Unpacking python3-fs (2.4.16-7) ... 160s Selecting previously unselected package python3-lxml:arm64. 160s Preparing to unpack .../53-python3-lxml_5.3.2-1_arm64.deb ... 160s Unpacking python3-lxml:arm64 (5.3.2-1) ... 160s Selecting previously unselected package python3-lz4. 160s Preparing to unpack .../54-python3-lz4_4.4.0+dfsg-1build1_arm64.deb ... 160s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ... 160s Selecting previously unselected package python3-scipy. 160s Preparing to unpack .../55-python3-scipy_1.14.1-4ubuntu2_arm64.deb ... 160s Unpacking python3-scipy (1.14.1-4ubuntu2) ... 160s Selecting previously unselected package python3-mpmath. 160s Preparing to unpack .../56-python3-mpmath_1.3.0-1_all.deb ... 160s Unpacking python3-mpmath (1.3.0-1) ... 160s Selecting previously unselected package python3-sympy. 160s Preparing to unpack .../57-python3-sympy_1.13.3-5_all.deb ... 160s Unpacking python3-sympy (1.13.3-5) ... 161s Selecting previously unselected package python3-ufolib2. 161s Preparing to unpack .../58-python3-ufolib2_0.17.0+dfsg1-1_all.deb ... 161s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ... 161s Selecting previously unselected package unicode-data. 161s Preparing to unpack .../59-unicode-data_15.1.0-1_all.deb ... 161s Unpacking unicode-data (15.1.0-1) ... 161s Selecting previously unselected package python3-fonttools. 161s Preparing to unpack .../60-python3-fonttools_4.55.3-2build1_arm64.deb ... 161s Unpacking python3-fonttools (4.55.3-2build1) ... 161s Selecting previously unselected package python3-gudhi. 161s Preparing to unpack .../61-python3-gudhi_3.10.1+dfsg-3build1_arm64.deb ... 161s Unpacking python3-gudhi (3.10.1+dfsg-3build1) ... 161s Selecting previously unselected package python3-iniconfig. 161s Preparing to unpack .../62-python3-iniconfig_1.1.1-2_all.deb ... 161s Unpacking python3-iniconfig (1.1.1-2) ... 161s Selecting previously unselected package python3-joblib. 161s Preparing to unpack .../63-python3-joblib_1.4.2-3_all.deb ... 161s Unpacking python3-joblib (1.4.2-3) ... 161s Selecting previously unselected package python3-kiwisolver. 161s Preparing to unpack .../64-python3-kiwisolver_1.4.7-3build1_arm64.deb ... 161s Unpacking python3-kiwisolver (1.4.7-3build1) ... 161s Selecting previously unselected package libopenjp2-7:arm64. 161s Preparing to unpack .../65-libopenjp2-7_2.5.3-2_arm64.deb ... 161s Unpacking libopenjp2-7:arm64 (2.5.3-2) ... 161s Selecting previously unselected package python3-pil:arm64. 161s Preparing to unpack .../66-python3-pil_11.1.0-5build1_arm64.deb ... 161s Unpacking python3-pil:arm64 (11.1.0-5build1) ... 161s Selecting previously unselected package python3.13-tk. 162s Preparing to unpack .../67-python3.13-tk_3.13.3-1_arm64.deb ... 162s Unpacking python3.13-tk (3.13.3-1) ... 162s Selecting previously unselected package python3-tk:arm64. 162s Preparing to unpack .../68-python3-tk_3.13.3-1_arm64.deb ... 162s Unpacking python3-tk:arm64 (3.13.3-1) ... 162s Selecting previously unselected package python3-pil.imagetk:arm64. 162s Preparing to unpack .../69-python3-pil.imagetk_11.1.0-5build1_arm64.deb ... 162s Unpacking python3-pil.imagetk:arm64 (11.1.0-5build1) ... 162s Selecting previously unselected package python3-packaging. 162s Preparing to unpack .../70-python3-packaging_24.2-1_all.deb ... 162s Unpacking python3-packaging (24.2-1) ... 162s Selecting previously unselected package python3-matplotlib. 162s Preparing to unpack .../71-python3-matplotlib_3.10.1+dfsg1-3_arm64.deb ... 162s Unpacking python3-matplotlib (3.10.1+dfsg1-3) ... 162s Selecting previously unselected package python3-pluggy. 162s Preparing to unpack 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python3-sklearn (1.4.2+dfsg-8) ... 163s Setting up libgraphite2-3:arm64 (1.3.14-2ubuntu1) ... 163s Setting up liblcms2-2:arm64 (2.16-2) ... 163s Setting up python3-iniconfig (1.1.1-2) ... 163s Setting up libtbbmalloc2:arm64 (2022.0.0-2) ... 163s Setting up libsharpyuv0:arm64 (1.5.0-0.1) ... 163s Setting up liblerc4:arm64 (4.0.0+ds-5ubuntu1) ... 163s Setting up libxrender1:arm64 (1:0.9.10-1.1build1) ... 163s Setting up python3-joblib (1.4.2-3) ... 164s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 164s Setting up fonts-lyx (2.4.3-1) ... 164s Setting up python3-threadpoolctl (3.1.0-1) ... 164s Setting up x11-common (1:7.7+23ubuntu4) ... 164s Setting up libdeflate0:arm64 (1.23-1) ... 164s Setting up libqhull-r8.0:arm64 (2020.2-6build1) ... 164s Setting up python3-all (3.13.3-1) ... 164s Setting up libgomp1:arm64 (15-20250404-0ubuntu1) ... 164s Setting up libjbig0:arm64 (2.1-6.1ubuntu2) ... 164s Setting up python3-platformdirs (4.3.6-1) ... 165s Setting up python3-fs (2.4.16-7) ... 165s Setting up unicode-data (15.1.0-1) ... 165s Setting up python3-decorator (5.1.1-5) ... 165s Setting up libblas3:arm64 (3.12.1-2) ... 165s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 165s Setting up python3-packaging (24.2-1) ... 165s Setting up python3-brotli (1.1.0-2build4) ... 165s Setting up python3-cycler (0.12.1-1) ... 165s Setting up libimagequant0:arm64 (2.18.0-1build1) ... 165s Setting up fonts-dejavu-mono (2.37-8) ... 165s Setting up python3-kiwisolver (1.4.7-3build1) ... 165s Setting up libhwloc15:arm64 (2.12.0-1) ... 165s Setting up python3-numpy-dev:arm64 (1:2.2.3+ds-5) ... 165s Setting up libtcl8.6:arm64 (8.6.16+dfsg-1) ... 165s Setting up fonts-dejavu-core (2.37-8) ... 166s Setting up libjpeg-turbo8:arm64 (2.1.5-3ubuntu2) ... 166s Setting up libgfortran5:arm64 (15-20250404-0ubuntu1) ... 166s Setting up python3-pluggy (1.5.0-1) ... 166s Setting up libwebp7:arm64 (1.5.0-0.1) ... 166s Setting up libxslt1.1:arm64 (1.1.39-0exp1ubuntu4) ... 166s Setting up libopenjp2-7:arm64 (2.5.3-2) ... 166s Setting up libharfbuzz0b:arm64 (10.2.0-1) ... 166s Setting up python3-dateutil (2.9.0-4) ... 166s Setting up libxss1:arm64 (1:1.2.3-1build3) ... 166s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 166s Setting up python3-mpmath (1.3.0-1) ... 166s Setting up python-matplotlib-data (3.10.1+dfsg1-3) ... 166s Setting up libwebpmux3:arm64 (1.5.0-0.1) ... 166s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 166s Setting up python3-sympy (1.13.3-5) ... 173s Setting up liblapack3:arm64 (3.12.1-2) ... 173s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 173s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 174s Setting up python3-pytest (8.3.5-1) ... 174s Setting up libwebpdemux2:arm64 (1.5.0-0.1) ... 174s Setting up libtbbbind-2-5:arm64 (2022.0.0-2) ... 174s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 174s Setting up libraqm0:arm64 (0.10.2-1) ... 174s Setting up python3-numpy (1:2.2.3+ds-5) ... 176s Setting up python3-lxml:arm64 (5.3.2-1) ... 176s Setting up libtiff6:arm64 (4.5.1+git230720-4ubuntu4) ... 176s Setting up python3-contourpy (1.3.1-1build1) ... 176s Setting up libfontconfig1:arm64 (2.15.0-2.2ubuntu1) ... 176s Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1build1) ... 176s Setting up libxft2:arm64 (2.3.6-1build1) ... 177s Setting up python3-scipy (1.14.1-4ubuntu2) ... 180s Setting up python3-pot (0.9.5+dfsg-1) ... 180s /usr/lib/python3/dist-packages/ot/unbalanced/_lbfgs.py:38: SyntaxWarning: invalid escape sequence '\m' 180s If None, then use :math:`\mathbf{c} = \mathbf{a} \mathbf{b}^T`. 180s Setting up libtk8.6:arm64 (8.6.16-1) ... 180s Setting up python3-sklearn-lib:arm64 (1.4.2+dfsg-8) ... 180s Setting up libtbb12:arm64 (2022.0.0-2) ... 180s Setting up python3.13-tk (3.13.3-1) ... 181s Setting up python3-pil:arm64 (11.1.0-5build1) ... 181s Setting up python3-eagerpy (0.30.0-3) ... 181s Setting up python3-sklearn (1.4.2+dfsg-8) ... 183s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 183s Setting up blt (2.5.3+dfsg-8) ... 183s Setting up python3-tk:arm64 (3.13.3-1) ... 183s Setting up python3-gudhi (3.10.1+dfsg-3build1) ... 183s Setting up python3-pil.imagetk:arm64 (11.1.0-5build1) ... 184s Setting up python3-fonttools (4.55.3-2build1) ... 185s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 185s Setting up python3-matplotlib (3.10.1+dfsg1-3) ... 186s Processing triggers for libc-bin (2.41-6ubuntu1) ... 187s Processing triggers for man-db (2.13.0-1) ... 188s autopkgtest [10:25:08]: test python-upstream.sh: [----------------------- 188s Running tests with Python 3.13. 191s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py'] 191s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py'] 191s ============================= test session starts ============================== 191s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 191s rootdir: /tmp/autopkgtest.MoXsA0/autopkgtest_tmp 191s plugins: typeguard-4.4.2 191s collected 158 items / 31 deselected / 127 selected 191s 191s test/test_alpha_complex.py ............. [ 10%] 191s test/test_betti_curve_representations.py .... [ 13%] 191s test/test_bottleneck_distance.py . [ 14%] 191s test/test_collapse_edges.py .. [ 15%] 191s test/test_cover_complex.py ....... [ 21%] 191s test/test_cubical_complex.py .................. [ 35%] 191s test/test_datasets_generators.py .. [ 37%] 191s test/test_dtm_rips_complex.py ... [ 39%] 191s test/test_euclidean_witness_complex.py .... [ 42%] 191s test/test_off.py .... [ 45%] 191s test/test_persistence_graphical_tools.py ...... [ 50%] 191s test/test_reader_utils.py ...... [ 55%] 191s test/test_representations_preprocessing.py . [ 55%] 191s test/test_rips_complex.py ....... [ 61%] 191s test/test_simplex_generators.py ... [ 63%] 191s test/test_simplex_tree.py .................... [ 79%] 191s test/test_simplex_tree_serialization.py .. [ 81%] 191s test/test_sklearn_cubical_persistence.py ... [ 83%] 193s test/test_sklearn_rips_persistence.py .... [ 86%] 193s test/test_subsampling.py ..... [ 90%] 193s test/test_tangential_complex.py . [ 91%] 193s test/test_time_delay.py . [ 92%] 193s test/test_tomato.py .. [ 93%] 193s test/test_wasserstein_barycenter.py . [ 94%] 193s test/test_weighted_rips_complex.py .... [ 97%] 193s test/test_witness_complex.py ... [100%] 193s 193s =============================== warnings summary =============================== 193s test/test_persistence_graphical_tools.py::test_limit_plot_persistence 193s /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:107: UserWarning: usetex mode requires TeX. 193s warnings.warn("usetex mode requires TeX.") 193s 193s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter 193s /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:61: UserWarning: Computing barycenter of empty diag set. Returns None. 193s warnings.warn("Computing barycenter of empty diag set. Returns None.") 193s 193s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 193s ================ 127 passed, 31 deselected, 2 warnings in 4.73s ================ 194s ********** 194s autopkgtest [10:25:14]: test python-upstream.sh: -----------------------] 194s python-upstream.sh PASS 194s autopkgtest [10:25:14]: test python-upstream.sh: - - - - - - - - - - results - - - - - - - - - - 195s autopkgtest [10:25:15]: @@@@@@@@@@@@@@@@@@@@ summary 195s python-upstream.sh PASS 212s nova [W] Using flock in prodstack6-arm64 212s Creating nova instance adt-questing-arm64-gudhi-20250502-102200-juju-7f2275-prod-proposed-migration-environment-21-98211a8c-d13f-460f-9a24-4b4f359dc8d7 from image adt/ubuntu-questing-arm64-server-20250502.img (UUID a0b7b7fd-ad05-4ea9-97eb-0f52dbbe98e1)... 212s nova [W] Timed out waiting for 9f4e583b-b738-48fb-a5f6-451790150d12 to get deleted.