0s autopkgtest [13:04:40]: starting date and time: 2025-05-03 13:04:40+0000 0s autopkgtest [13:04:40]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [13:04:40]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ksgli1ao/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:make-dfsg --apt-upgrade rdkit --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=make-dfsg/4.4.1-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-3.secgroup --name adt-questing-amd64-rdkit-20250503-123550-juju-7f2275-prod-proposed-migration-environment-20-6f32a20e-10d4-4ae6-b036-39ea2d6938f0 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 49s autopkgtest [13:05:29]: testbed dpkg architecture: amd64 49s autopkgtest [13:05:29]: testbed apt version: 3.0.0 50s autopkgtest [13:05:30]: @@@@@@@@@@@@@@@@@@@@ test bed setup 50s autopkgtest [13:05:30]: testbed release detected to be: None 51s autopkgtest [13:05:31]: updating testbed package index (apt update) 51s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 51s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 51s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 51s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 51s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1597 kB] 52s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [150 kB] 52s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [38.8 kB] 52s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [202 kB] 52s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [145 kB] 52s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1515 kB] 52s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [615 kB] 52s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [54.1 kB] 52s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [25.3 kB] 52s Fetched 4453 kB in 1s (3881 kB/s) 53s Reading package lists... 53s autopkgtest [13:05:33]: upgrading testbed (apt dist-upgrade and autopurge) 53s Reading package lists... 54s Building dependency tree... 54s Reading state information... 54s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 54s Starting 2 pkgProblemResolver with broken count: 0 54s Done 55s Entering ResolveByKeep 55s 55s Calculating upgrade... 55s The following packages will be upgraded: 55s debianutils libmbim-glib4 libmbim-proxy libnftnl11 libqmi-glib5 libqmi-proxy 55s make python3-lazr.restfulclient 55s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 55s Need to get 1575 kB of archives. 55s After this operation, 193 kB disk space will be freed. 55s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 55s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 55s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 55s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 55s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 55s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 56s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 make amd64 4.4.1-2 [197 kB] 56s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 56s Fetched 1575 kB in 1s (2765 kB/s) 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 56s Preparing to unpack .../debianutils_5.22_amd64.deb ... 56s Unpacking debianutils (5.22) over (5.21) ... 56s Setting up debianutils (5.22) ... 56s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 56s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 56s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 56s Preparing to unpack .../1-libmbim-proxy_1.32.0-1_amd64.deb ... 56s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 56s Preparing to unpack .../2-libmbim-glib4_1.32.0-1_amd64.deb ... 56s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 56s Preparing to unpack .../3-libqmi-proxy_1.36.0-1_amd64.deb ... 56s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 56s Preparing to unpack .../4-libqmi-glib5_1.36.0-1_amd64.deb ... 56s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 57s Preparing to unpack .../5-make_4.4.1-2_amd64.deb ... 57s Unpacking make (4.4.1-2) over (4.4.1-1) ... 57s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 57s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 57s Setting up libnftnl11:amd64 (1.2.9-1) ... 57s Setting up make (4.4.1-2) ... 57s Setting up python3-lazr.restfulclient (0.14.6-3) ... 57s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 57s Setting up libmbim-proxy (1.32.0-1) ... 57s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 57s Setting up libqmi-proxy (1.36.0-1) ... 57s Processing triggers for libc-bin (2.41-6ubuntu1) ... 57s Processing triggers for man-db (2.13.0-1) ... 58s Reading package lists... 58s Building dependency tree... 58s Reading state information... 59s Starting pkgProblemResolver with broken count: 0 59s Starting 2 pkgProblemResolver with broken count: 0 59s Done 59s Solving dependencies... 59s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [13:05:42]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 62s autopkgtest [13:05:42]: @@@@@@@@@@@@@@@@@@@@ apt-source rdkit 68s Get:1 http://ftpmaster.internal/ubuntu questing/universe rdkit 202409.6-2 (dsc) [3055 B] 68s Get:2 http://ftpmaster.internal/ubuntu questing/universe rdkit 202409.6-2 (tar) [63.5 MB] 68s Get:3 http://ftpmaster.internal/ubuntu questing/universe rdkit 202409.6-2 (diff) [40.0 kB] 68s gpgv: Signature made Sun Mar 9 10:04:40 2025 UTC 68s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 68s gpgv: Can't check signature: No public key 68s dpkg-source: warning: cannot verify inline signature for ./rdkit_202409.6-2.dsc: no acceptable signature found 70s autopkgtest [13:05:50]: testing package rdkit version 202409.6-2 71s autopkgtest [13:05:51]: build not needed 84s autopkgtest [13:06:04]: test installcheck: preparing testbed 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Starting pkgProblemResolver with broken count: 0 85s Starting 2 pkgProblemResolver with broken count: 0 85s Done 85s The following NEW packages will be installed: 85s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 85s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 85s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 85s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 85s liblapack3 libllvm20 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev 85s librdkit1t64 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 85s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 85s postgresql-common postgresql-common-dev python3-numpy python3-numpy-dev 85s python3-rdkit rdkit-data rdkit-doc ssl-cert 85s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 85s Need to get 99.8 MB of archives. 85s After this operation, 476 MB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 85s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-client-common all 274 [47.6 kB] 85s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libio-pty-perl amd64 1:1.20-1build3 [31.4 kB] 85s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libipc-run-perl all 20231003.0-2 [91.5 kB] 85s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-common-dev all 274 [73.0 kB] 85s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 85s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-common all 274 [101 kB] 85s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 85s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 85s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 86s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 86s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 86s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 86s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 86s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.2ubuntu1 [260 kB] 86s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-python1.83.0 amd64 1.83.0-4.2ubuntu1 [314 kB] 86s Get:17 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-4.2ubuntu1 [243 kB] 86s Get:18 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-4.2ubuntu1 [344 kB] 86s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 86s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 86s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 86s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 86s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 86s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 86s Get:25 http://ftpmaster.internal/ubuntu questing/universe amd64 libcoordgen3 amd64 3.0.2-1 [215 kB] 86s Get:26 http://ftpmaster.internal/ubuntu questing/universe amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [702 kB] 86s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 86s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 86s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libllvm20 amd64 1:20.1.2-0ubuntu1 [30.5 MB] 87s Get:30 http://ftpmaster.internal/ubuntu questing/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 87s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libpq5 amd64 17.4-1 [155 kB] 87s Get:32 http://ftpmaster.internal/ubuntu questing/universe amd64 librdkit1t64 amd64 202409.6-2 [6204 kB] 87s Get:33 http://ftpmaster.internal/ubuntu questing/universe amd64 librdkit-dev amd64 202409.6-2 [348 kB] 87s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB] 87s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-client-17 amd64 17.4-1 [1425 kB] 88s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-17 amd64 17.4-1 [16.6 MB] 88s Get:37 http://ftpmaster.internal/ubuntu questing/universe amd64 postgresql-17-rdkit amd64 202409.6-2 [124 kB] 88s Get:38 http://ftpmaster.internal/ubuntu questing/universe amd64 rdkit-data all 202409.6-2 [12.6 MB] 88s Get:39 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-rdkit amd64 202409.6-2 [4987 kB] 89s Get:40 http://ftpmaster.internal/ubuntu questing/universe amd64 rdkit-doc all 202409.6-2 [6347 kB] 89s Preconfiguring packages ... 89s Fetched 99.8 MB in 4s (25.6 MB/s) 89s Selecting previously unselected package libjson-perl. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 89s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 89s Unpacking libjson-perl (4.10000-1) ... 89s Selecting previously unselected package postgresql-client-common. 89s Preparing to unpack .../01-postgresql-client-common_274_all.deb ... 89s Unpacking postgresql-client-common (274) ... 89s Selecting previously unselected package libio-pty-perl. 89s Preparing to unpack .../02-libio-pty-perl_1%3a1.20-1build3_amd64.deb ... 89s Unpacking libio-pty-perl (1:1.20-1build3) ... 89s Selecting previously unselected package libipc-run-perl. 89s Preparing to unpack .../03-libipc-run-perl_20231003.0-2_all.deb ... 89s Unpacking libipc-run-perl (20231003.0-2) ... 89s Selecting previously unselected package postgresql-common-dev. 89s Preparing to unpack .../04-postgresql-common-dev_274_all.deb ... 89s Unpacking postgresql-common-dev (274) ... 89s Selecting previously unselected package ssl-cert. 89s Preparing to unpack .../05-ssl-cert_1.1.3ubuntu1_all.deb ... 89s Unpacking ssl-cert (1.1.3ubuntu1) ... 89s Selecting previously unselected package postgresql-common. 89s Preparing to unpack .../06-postgresql-common_274_all.deb ... 89s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 89s Unpacking postgresql-common (274) ... 89s Selecting previously unselected package python3-numpy-dev:amd64. 89s Preparing to unpack .../07-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 89s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 89s Selecting previously unselected package libblas3:amd64. 89s Preparing to unpack .../08-libblas3_3.12.1-2_amd64.deb ... 89s Unpacking libblas3:amd64 (3.12.1-2) ... 89s Selecting previously unselected package libgfortran5:amd64. 89s Preparing to unpack .../09-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 89s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 89s Selecting previously unselected package liblapack3:amd64. 89s Preparing to unpack .../10-liblapack3_3.12.1-2_amd64.deb ... 89s Unpacking liblapack3:amd64 (3.12.1-2) ... 89s Selecting previously unselected package python3-numpy. 89s Preparing to unpack .../11-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 89s Unpacking python3-numpy (1:2.2.3+ds-5) ... 90s Selecting previously unselected package fonts-freefont-ttf. 90s Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 90s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 90s Selecting previously unselected package fontconfig-config. 90s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 90s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 90s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 90s Preparing to unpack .../14-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 90s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 90s Selecting previously unselected package libboost-python1.83.0. 90s Preparing to unpack .../15-libboost-python1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 90s Unpacking libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 90s Selecting previously unselected package libboost-numpy1.83.0. 90s Preparing to unpack .../16-libboost-numpy1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 90s Unpacking libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 90s Selecting previously unselected package libboost-serialization1.83.0:amd64. 90s Preparing to unpack .../17-libboost-serialization1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 90s Unpacking libboost-serialization1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 90s Selecting previously unselected package libfontconfig1:amd64. 90s Preparing to unpack .../18-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 90s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 90s Selecting previously unselected package libpixman-1-0:amd64. 90s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_amd64.deb ... 90s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 90s Selecting previously unselected package libxcb-render0:amd64. 90s Preparing to unpack .../20-libxcb-render0_1.17.0-2_amd64.deb ... 90s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 90s Selecting previously unselected package libxcb-shm0:amd64. 90s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_amd64.deb ... 90s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 90s Selecting previously unselected package libxrender1:amd64. 90s Preparing to unpack .../22-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 90s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 90s Selecting previously unselected package libcairo2:amd64. 90s Preparing to unpack .../23-libcairo2_1.18.4-1_amd64.deb ... 90s Unpacking libcairo2:amd64 (1.18.4-1) ... 90s Selecting previously unselected package libcoordgen3:amd64. 90s Preparing to unpack .../24-libcoordgen3_3.0.2-1_amd64.deb ... 90s Unpacking libcoordgen3:amd64 (3.0.2-1) ... 90s Selecting previously unselected package libinchi1.07. 90s Preparing to unpack .../25-libinchi1.07_1.07.3+dfsg-1_amd64.deb ... 90s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 90s Selecting previously unselected package libjs-jquery. 90s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 90s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 90s Selecting previously unselected package libjs-underscore. 90s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 90s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 90s Selecting previously unselected package libllvm20:amd64. 90s Preparing to unpack .../28-libllvm20_1%3a20.1.2-0ubuntu1_amd64.deb ... 90s Unpacking libllvm20:amd64 (1:20.1.2-0ubuntu1) ... 91s Selecting previously unselected package libmaeparser1:amd64. 91s Preparing to unpack .../29-libmaeparser1_1.3.1-1build1_amd64.deb ... 91s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ... 91s Selecting previously unselected package libpq5:amd64. 91s Preparing to unpack .../30-libpq5_17.4-1_amd64.deb ... 91s Unpacking libpq5:amd64 (17.4-1) ... 91s Selecting previously unselected package librdkit1t64. 91s Preparing to unpack .../31-librdkit1t64_202409.6-2_amd64.deb ... 91s Unpacking librdkit1t64 (202409.6-2) ... 91s Selecting previously unselected package librdkit-dev. 91s Preparing to unpack .../32-librdkit-dev_202409.6-2_amd64.deb ... 91s Unpacking librdkit-dev (202409.6-2) ... 91s Selecting previously unselected package libxslt1.1:amd64. 91s Preparing to unpack .../33-libxslt1.1_1.1.39-0exp1ubuntu4_amd64.deb ... 91s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 91s Selecting previously unselected package postgresql-client-17. 91s Preparing to unpack .../34-postgresql-client-17_17.4-1_amd64.deb ... 91s Unpacking postgresql-client-17 (17.4-1) ... 91s Selecting previously unselected package postgresql-17. 91s Preparing to unpack .../35-postgresql-17_17.4-1_amd64.deb ... 91s Unpacking postgresql-17 (17.4-1) ... 91s Selecting previously unselected package postgresql-17-rdkit. 91s Preparing to unpack .../36-postgresql-17-rdkit_202409.6-2_amd64.deb ... 91s Unpacking postgresql-17-rdkit (202409.6-2) ... 91s Selecting previously unselected package rdkit-data. 91s Preparing to unpack .../37-rdkit-data_202409.6-2_all.deb ... 91s Unpacking rdkit-data (202409.6-2) ... 92s Selecting previously unselected package python3-rdkit. 92s Preparing to unpack .../38-python3-rdkit_202409.6-2_amd64.deb ... 92s Unpacking python3-rdkit (202409.6-2) ... 92s Selecting previously unselected package rdkit-doc. 92s Preparing to unpack .../39-rdkit-doc_202409.6-2_all.deb ... 92s Unpacking rdkit-doc (202409.6-2) ... 93s Setting up postgresql-client-common (274) ... 93s Setting up libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 93s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 93s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 93s Setting up libio-pty-perl (1:1.20-1build3) ... 93s Setting up libxcb-render0:amd64 (1.17.0-2) ... 93s Setting up libpq5:amd64 (17.4-1) ... 93s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 93s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 93s Setting up rdkit-data (202409.6-2) ... 93s Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 93s Setting up libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 93s Setting up libblas3:amd64 (3.12.1-2) ... 93s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 93s Setting up ssl-cert (1.1.3ubuntu1) ... 93s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 93s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 93s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 93s Setting up libllvm20:amd64 (1:20.1.2-0ubuntu1) ... 93s Setting up libipc-run-perl (20231003.0-2) ... 93s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 93s Setting up libjson-perl (4.10000-1) ... 93s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 93s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 93s Setting up libcoordgen3:amd64 (3.0.2-1) ... 93s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 93s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 93s Setting up postgresql-common-dev (274) ... 93s Setting up liblapack3:amd64 (3.12.1-2) ... 93s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 93s Setting up postgresql-client-17 (17.4-1) ... 94s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 94s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 94s Setting up rdkit-doc (202409.6-2) ... 94s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 94s Setting up postgresql-common (274) ... 94s Creating config file /etc/postgresql-common/createcluster.conf with new version 94s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 94s Removing obsolete dictionary files: 95s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 95s Setting up python3-numpy (1:2.2.3+ds-5) ... 97s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 97s Setting up postgresql-17 (17.4-1) ... 97s Creating new PostgreSQL cluster 17/main ... 97s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 97s The files belonging to this database system will be owned by user "postgres". 97s This user must also own the server process. 97s 97s The database cluster will be initialized with locale "C.UTF-8". 97s The default database encoding has accordingly been set to "UTF8". 97s The default text search configuration will be set to "english". 97s 97s Data page checksums are disabled. 97s 97s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 97s creating subdirectories ... ok 97s selecting dynamic shared memory implementation ... posix 97s selecting default "max_connections" ... 100 97s selecting default "shared_buffers" ... 128MB 98s selecting default time zone ... Etc/UTC 98s creating configuration files ... ok 98s running bootstrap script ... ok 98s performing post-bootstrap initialization ... ok 98s syncing data to disk ... ok 101s Setting up libcairo2:amd64 (1.18.4-1) ... 101s Setting up librdkit1t64 (202409.6-2) ... 101s Setting up postgresql-17-rdkit (202409.6-2) ... 101s Setting up python3-rdkit (202409.6-2) ... 101s Setting up librdkit-dev (202409.6-2) ... 101s Processing triggers for man-db (2.13.0-1) ... 102s Processing triggers for libc-bin (2.41-6ubuntu1) ... 104s autopkgtest [13:06:24]: test installcheck: [----------------------- 104s ### PostgreSQL 17 installcheck ### 104s Creating new PostgreSQL cluster 17/regress ... 107s make: Entering directory '/tmp/autopkgtest.AdgDJE/build.cWF/src/Code/PgSQL/rdkit' 107s echo "# +++ regress install-check in +++" && /usr/lib/postgresql/17/lib/pgxs/src/makefiles/../../src/test/regress/pg_regress --inputdir=/tmp/autopkgtest.AdgDJE/build.cWF/src --bindir='/usr/lib/postgresql/17/bin' --dbname=contrib_regression rdkit-91 props btree molgist bfpgist-91 bfpgin sfpgist slfpgist fps reaction fmcs query xqm 107s # +++ regress install-check in +++ 107s # using postmaster on localhost, port 5433 109s ok 1 - rdkit-91 2018 ms 109s ok 2 - props 56 ms 109s ok 3 - btree 351 ms 110s ok 4 - molgist 1013 ms 111s ok 5 - bfpgist-91 69 ms 111s ok 6 - bfpgin 147 ms 111s ok 7 - sfpgist 55 ms 111s ok 8 - slfpgist 69 ms 111s ok 9 - fps 63 ms 113s ok 10 - reaction 2211 ms 113s ok 11 - fmcs 147 ms 113s ok 12 - query 35 ms 113s ok 13 - xqm 184 ms 113s 1..13 113s # All 13 tests passed. 113s make: Leaving directory '/tmp/autopkgtest.AdgDJE/build.cWF/src/Code/PgSQL/rdkit' 113s Dropping cluster 17/regress ... 114s ### End 17 installcheck ### 114s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 114s dpkg-architecture: warning: cannot determine CC system type, falling back to default (native compilation) 114s autopkgtest [13:06:34]: test installcheck: -----------------------] 115s installcheck PASS 115s autopkgtest [13:06:35]: test installcheck: - - - - - - - - - - results - - - - - - - - - - 115s autopkgtest [13:06:35]: test importcheck: preparing testbed 192s autopkgtest [13:07:52]: testbed dpkg architecture: amd64 192s autopkgtest [13:07:52]: testbed apt version: 3.0.0 193s autopkgtest [13:07:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 193s autopkgtest [13:07:53]: testbed release detected to be: questing 194s autopkgtest [13:07:54]: updating testbed package index (apt update) 194s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 194s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 194s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 194s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 194s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [38.8 kB] 194s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [150 kB] 194s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1597 kB] 195s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [202 kB] 195s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [145 kB] 195s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [615 kB] 195s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1515 kB] 195s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [25.3 kB] 195s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [54.1 kB] 195s Fetched 4453 kB in 1s (4199 kB/s) 196s Reading package lists... 196s autopkgtest [13:07:56]: upgrading testbed (apt dist-upgrade and autopurge) 197s Reading package lists... 197s Building dependency tree... 197s Reading state information... 197s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 197s Starting 2 pkgProblemResolver with broken count: 0 197s Done 198s Entering ResolveByKeep 198s 198s Calculating upgrade... 199s The following packages will be upgraded: 199s debianutils libmbim-glib4 libmbim-proxy libnftnl11 libqmi-glib5 libqmi-proxy 199s make python3-lazr.restfulclient 199s 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 1575 kB of archives. 199s After this operation, 193 kB disk space will be freed. 199s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 199s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 199s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 199s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 199s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 199s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 199s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 make amd64 4.4.1-2 [197 kB] 199s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 199s Fetched 1575 kB in 1s (2828 kB/s) 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 200s Preparing to unpack .../debianutils_5.22_amd64.deb ... 200s Unpacking debianutils (5.22) over (5.21) ... 200s Setting up debianutils (5.22) ... 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 200s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 200s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 200s Preparing to unpack .../1-libmbim-proxy_1.32.0-1_amd64.deb ... 200s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 200s Preparing to unpack .../2-libmbim-glib4_1.32.0-1_amd64.deb ... 200s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 200s Preparing to unpack .../3-libqmi-proxy_1.36.0-1_amd64.deb ... 200s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 200s Preparing to unpack .../4-libqmi-glib5_1.36.0-1_amd64.deb ... 200s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 200s Preparing to unpack .../5-make_4.4.1-2_amd64.deb ... 200s Unpacking make (4.4.1-2) over (4.4.1-1) ... 200s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 200s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 200s Setting up libnftnl11:amd64 (1.2.9-1) ... 200s Setting up make (4.4.1-2) ... 200s Setting up python3-lazr.restfulclient (0.14.6-3) ... 200s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 200s Setting up libmbim-proxy (1.32.0-1) ... 200s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 200s Setting up libqmi-proxy (1.36.0-1) ... 200s Processing triggers for libc-bin (2.41-6ubuntu1) ... 200s Processing triggers for man-db (2.13.0-1) ... 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 202s Starting pkgProblemResolver with broken count: 0 202s Starting 2 pkgProblemResolver with broken count: 0 202s Done 203s Solving dependencies... 203s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 206s Starting pkgProblemResolver with broken count: 0 206s Starting 2 pkgProblemResolver with broken count: 0 206s Done 207s The following NEW packages will be installed: 207s fontconfig-config fonts-freefont-ttf libblas3 libboost-iostreams1.83.0 207s libboost-numpy1.83.0 libboost-python1.83.0 libboost-serialization1.83.0 207s libcairo2 libcoordgen3 libfontconfig1 libgfortran5 libinchi1.07 207s libio-pty-perl libipc-run-perl libjs-jquery libjs-underscore libjson-perl 207s liblapack3 libllvm20 libmaeparser1 libpixman-1-0 libpq5 librdkit-dev 207s librdkit1t64 libxcb-render0 libxcb-shm0 libxrender1 libxslt1.1 postgresql-17 207s postgresql-17-rdkit postgresql-client-17 postgresql-client-common 207s postgresql-common postgresql-common-dev python3-numpy python3-numpy-dev 207s python3-rdkit rdkit-data rdkit-doc ssl-cert 207s 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. 207s Need to get 99.8 MB of archives. 207s After this operation, 476 MB of additional disk space will be used. 207s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 207s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-client-common all 274 [47.6 kB] 207s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libio-pty-perl amd64 1:1.20-1build3 [31.4 kB] 207s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libipc-run-perl all 20231003.0-2 [91.5 kB] 207s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-common-dev all 274 [73.0 kB] 207s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 ssl-cert all 1.1.3ubuntu1 [18.7 kB] 207s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-common all 274 [101 kB] 207s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 207s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 207s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 208s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 208s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 208s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-freefont-ttf all 20211204+svn4273-2 [5641 kB] 208s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 208s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.2ubuntu1 [260 kB] 208s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-python1.83.0 amd64 1.83.0-4.2ubuntu1 [314 kB] 208s Get:17 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-4.2ubuntu1 [243 kB] 208s Get:18 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-serialization1.83.0 amd64 1.83.0-4.2ubuntu1 [344 kB] 208s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 208s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 208s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 208s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 208s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 208s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 208s Get:25 http://ftpmaster.internal/ubuntu questing/universe amd64 libcoordgen3 amd64 3.0.2-1 [215 kB] 208s Get:26 http://ftpmaster.internal/ubuntu questing/universe amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [702 kB] 208s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 208s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 208s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libllvm20 amd64 1:20.1.2-0ubuntu1 [30.5 MB] 209s Get:30 http://ftpmaster.internal/ubuntu questing/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 209s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libpq5 amd64 17.4-1 [155 kB] 209s Get:32 http://ftpmaster.internal/ubuntu questing/universe amd64 librdkit1t64 amd64 202409.6-2 [6204 kB] 209s Get:33 http://ftpmaster.internal/ubuntu questing/universe amd64 librdkit-dev amd64 202409.6-2 [348 kB] 210s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB] 210s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-client-17 amd64 17.4-1 [1425 kB] 210s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 postgresql-17 amd64 17.4-1 [16.6 MB] 210s Get:37 http://ftpmaster.internal/ubuntu questing/universe amd64 postgresql-17-rdkit amd64 202409.6-2 [124 kB] 210s Get:38 http://ftpmaster.internal/ubuntu questing/universe amd64 rdkit-data all 202409.6-2 [12.6 MB] 211s Get:39 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-rdkit amd64 202409.6-2 [4987 kB] 211s Get:40 http://ftpmaster.internal/ubuntu questing/universe amd64 rdkit-doc all 202409.6-2 [6347 kB] 211s Preconfiguring packages ... 211s Fetched 99.8 MB in 4s (24.1 MB/s) 211s Selecting previously unselected package libjson-perl. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 211s Preparing to unpack .../00-libjson-perl_4.10000-1_all.deb ... 211s Unpacking libjson-perl (4.10000-1) ... 211s Selecting previously unselected package postgresql-client-common. 211s Preparing to unpack .../01-postgresql-client-common_274_all.deb ... 211s Unpacking postgresql-client-common (274) ... 211s Selecting previously unselected package libio-pty-perl. 212s Preparing to unpack .../02-libio-pty-perl_1%3a1.20-1build3_amd64.deb ... 212s Unpacking libio-pty-perl (1:1.20-1build3) ... 212s Selecting previously unselected package libipc-run-perl. 212s Preparing to unpack .../03-libipc-run-perl_20231003.0-2_all.deb ... 212s Unpacking libipc-run-perl (20231003.0-2) ... 212s Selecting previously unselected package postgresql-common-dev. 212s Preparing to unpack .../04-postgresql-common-dev_274_all.deb ... 212s Unpacking postgresql-common-dev (274) ... 212s Selecting previously unselected package ssl-cert. 212s Preparing to unpack .../05-ssl-cert_1.1.3ubuntu1_all.deb ... 212s Unpacking ssl-cert (1.1.3ubuntu1) ... 212s Selecting previously unselected package postgresql-common. 212s Preparing to unpack .../06-postgresql-common_274_all.deb ... 212s Adding 'diversion of /usr/bin/pg_config to /usr/bin/pg_config.libpq-dev by postgresql-common' 212s Unpacking postgresql-common (274) ... 212s Selecting previously unselected package python3-numpy-dev:amd64. 212s Preparing to unpack .../07-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 212s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 212s Selecting previously unselected package libblas3:amd64. 212s Preparing to unpack .../08-libblas3_3.12.1-2_amd64.deb ... 212s Unpacking libblas3:amd64 (3.12.1-2) ... 212s Selecting previously unselected package libgfortran5:amd64. 212s Preparing to unpack .../09-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 212s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 212s Selecting previously unselected package liblapack3:amd64. 212s Preparing to unpack .../10-liblapack3_3.12.1-2_amd64.deb ... 212s Unpacking liblapack3:amd64 (3.12.1-2) ... 212s Selecting previously unselected package python3-numpy. 212s Preparing to unpack .../11-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 212s Unpacking python3-numpy (1:2.2.3+ds-5) ... 212s Selecting previously unselected package fonts-freefont-ttf. 212s Preparing to unpack .../12-fonts-freefont-ttf_20211204+svn4273-2_all.deb ... 212s Unpacking fonts-freefont-ttf (20211204+svn4273-2) ... 212s Selecting previously unselected package fontconfig-config. 212s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 212s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 212s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 212s Preparing to unpack .../14-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 212s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 212s Selecting previously unselected package libboost-python1.83.0. 212s Preparing to unpack .../15-libboost-python1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 212s Unpacking libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 212s Selecting previously unselected package libboost-numpy1.83.0. 212s Preparing to unpack .../16-libboost-numpy1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 212s Unpacking libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 212s Selecting previously unselected package libboost-serialization1.83.0:amd64. 212s Preparing to unpack .../17-libboost-serialization1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 212s Unpacking libboost-serialization1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 213s Selecting previously unselected package libfontconfig1:amd64. 213s Preparing to unpack .../18-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 213s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 213s Selecting previously unselected package libpixman-1-0:amd64. 213s Preparing to unpack .../19-libpixman-1-0_0.44.0-3_amd64.deb ... 213s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 213s Selecting previously unselected package libxcb-render0:amd64. 213s Preparing to unpack .../20-libxcb-render0_1.17.0-2_amd64.deb ... 213s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 213s Selecting previously unselected package libxcb-shm0:amd64. 213s Preparing to unpack .../21-libxcb-shm0_1.17.0-2_amd64.deb ... 213s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 213s Selecting previously unselected package libxrender1:amd64. 213s Preparing to unpack .../22-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 213s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 213s Selecting previously unselected package libcairo2:amd64. 213s Preparing to unpack .../23-libcairo2_1.18.4-1_amd64.deb ... 213s Unpacking libcairo2:amd64 (1.18.4-1) ... 213s Selecting previously unselected package libcoordgen3:amd64. 213s Preparing to unpack .../24-libcoordgen3_3.0.2-1_amd64.deb ... 213s Unpacking libcoordgen3:amd64 (3.0.2-1) ... 213s Selecting previously unselected package libinchi1.07. 213s Preparing to unpack .../25-libinchi1.07_1.07.3+dfsg-1_amd64.deb ... 213s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 213s Selecting previously unselected package libjs-jquery. 213s Preparing to unpack .../26-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 213s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 213s Selecting previously unselected package libjs-underscore. 213s Preparing to unpack .../27-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 213s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 213s Selecting previously unselected package libllvm20:amd64. 213s Preparing to unpack .../28-libllvm20_1%3a20.1.2-0ubuntu1_amd64.deb ... 213s Unpacking libllvm20:amd64 (1:20.1.2-0ubuntu1) ... 213s Selecting previously unselected package libmaeparser1:amd64. 213s Preparing to unpack .../29-libmaeparser1_1.3.1-1build1_amd64.deb ... 213s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ... 213s Selecting previously unselected package libpq5:amd64. 213s Preparing to unpack .../30-libpq5_17.4-1_amd64.deb ... 213s Unpacking libpq5:amd64 (17.4-1) ... 213s Selecting previously unselected package librdkit1t64. 213s Preparing to unpack .../31-librdkit1t64_202409.6-2_amd64.deb ... 213s Unpacking librdkit1t64 (202409.6-2) ... 214s Selecting previously unselected package librdkit-dev. 214s Preparing to unpack .../32-librdkit-dev_202409.6-2_amd64.deb ... 214s Unpacking librdkit-dev (202409.6-2) ... 214s Selecting previously unselected package libxslt1.1:amd64. 214s Preparing to unpack .../33-libxslt1.1_1.1.39-0exp1ubuntu4_amd64.deb ... 214s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 214s Selecting previously unselected package postgresql-client-17. 214s Preparing to unpack .../34-postgresql-client-17_17.4-1_amd64.deb ... 214s Unpacking postgresql-client-17 (17.4-1) ... 214s Selecting previously unselected package postgresql-17. 214s Preparing to unpack .../35-postgresql-17_17.4-1_amd64.deb ... 214s Unpacking postgresql-17 (17.4-1) ... 214s Selecting previously unselected package postgresql-17-rdkit. 214s Preparing to unpack .../36-postgresql-17-rdkit_202409.6-2_amd64.deb ... 214s Unpacking postgresql-17-rdkit (202409.6-2) ... 214s Selecting previously unselected package rdkit-data. 214s Preparing to unpack .../37-rdkit-data_202409.6-2_all.deb ... 214s Unpacking rdkit-data (202409.6-2) ... 214s Selecting previously unselected package python3-rdkit. 214s Preparing to unpack .../38-python3-rdkit_202409.6-2_amd64.deb ... 214s Unpacking python3-rdkit (202409.6-2) ... 214s Selecting previously unselected package rdkit-doc. 214s Preparing to unpack .../39-rdkit-doc_202409.6-2_all.deb ... 214s Unpacking rdkit-doc (202409.6-2) ... 215s Setting up postgresql-client-common (274) ... 215s Setting up libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 215s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 215s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 215s Setting up libio-pty-perl (1:1.20-1build3) ... 215s Setting up libxcb-render0:amd64 (1.17.0-2) ... 215s Setting up libpq5:amd64 (17.4-1) ... 215s Setting up fonts-freefont-ttf (20211204+svn4273-2) ... 215s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 215s Setting up rdkit-data (202409.6-2) ... 215s Setting up libboost-serialization1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 215s Setting up libboost-numpy1.83.0 (1.83.0-4.2ubuntu1) ... 215s Setting up libblas3:amd64 (3.12.1-2) ... 215s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 215s Setting up ssl-cert (1.1.3ubuntu1) ... 216s Created symlink '/etc/systemd/system/multi-user.target.wants/ssl-cert.service' → '/usr/lib/systemd/system/ssl-cert.service'. 216s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 216s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 216s Setting up libllvm20:amd64 (1:20.1.2-0ubuntu1) ... 216s Setting up libipc-run-perl (20231003.0-2) ... 216s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 216s Setting up libjson-perl (4.10000-1) ... 216s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 216s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 216s Setting up libcoordgen3:amd64 (3.0.2-1) ... 216s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 216s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 216s Setting up postgresql-common-dev (274) ... 216s Setting up liblapack3:amd64 (3.12.1-2) ... 216s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 216s Setting up postgresql-client-17 (17.4-1) ... 216s update-alternatives: using /usr/share/postgresql/17/man/man1/psql.1.gz to provide /usr/share/man/man1/psql.1.gz (psql.1.gz) in auto mode 216s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 216s Setting up rdkit-doc (202409.6-2) ... 216s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 216s Setting up postgresql-common (274) ... 217s Creating config file /etc/postgresql-common/createcluster.conf with new version 217s Building PostgreSQL dictionaries from installed myspell/hunspell packages... 217s Removing obsolete dictionary files: 218s Created symlink '/etc/systemd/system/multi-user.target.wants/postgresql.service' → '/usr/lib/systemd/system/postgresql.service'. 218s Setting up python3-numpy (1:2.2.3+ds-5) ... 220s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 220s Setting up postgresql-17 (17.4-1) ... 220s Creating new PostgreSQL cluster 17/main ... 220s /usr/lib/postgresql/17/bin/initdb -D /var/lib/postgresql/17/main --auth-local peer --auth-host scram-sha-256 --no-instructions 220s The files belonging to this database system will be owned by user "postgres". 220s This user must also own the server process. 220s 220s The database cluster will be initialized with locale "C.UTF-8". 220s The default database encoding has accordingly been set to "UTF8". 220s The default text search configuration will be set to "english". 220s 220s Data page checksums are disabled. 220s 220s fixing permissions on existing directory /var/lib/postgresql/17/main ... ok 220s creating subdirectories ... ok 220s selecting dynamic shared memory implementation ... posix 220s selecting default "max_connections" ... 100 220s selecting default "shared_buffers" ... 128MB 220s selecting default time zone ... Etc/UTC 220s creating configuration files ... ok 221s running bootstrap script ... ok 221s performing post-bootstrap initialization ... ok 221s syncing data to disk ... ok 224s Setting up libcairo2:amd64 (1.18.4-1) ... 224s Setting up librdkit1t64 (202409.6-2) ... 224s Setting up postgresql-17-rdkit (202409.6-2) ... 224s Setting up python3-rdkit (202409.6-2) ... 224s Setting up librdkit-dev (202409.6-2) ... 224s Processing triggers for man-db (2.13.0-1) ... 225s Processing triggers for libc-bin (2.41-6ubuntu1) ... 245s autopkgtest [13:08:45]: test importcheck: [----------------------- 246s autopkgtest [13:08:46]: test importcheck: -----------------------] 246s importcheck PASS 246s autopkgtest [13:08:46]: test importcheck: - - - - - - - - - - results - - - - - - - - - - 246s autopkgtest [13:08:46]: @@@@@@@@@@@@@@@@@@@@ summary 246s installcheck PASS 246s importcheck PASS 264s nova [W] Skipping flock for amd64 264s Creating nova instance adt-questing-amd64-rdkit-20250503-123550-juju-7f2275-prod-proposed-migration-environment-20-6f32a20e-10d4-4ae6-b036-39ea2d6938f0 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 264s nova [W] Timed out waiting for a137aa8e-809c-496b-ad91-c3b6fa5ba84c to get deleted. 264s nova [W] Skipping flock for amd64 264s Creating nova instance adt-questing-amd64-rdkit-20250503-123550-juju-7f2275-prod-proposed-migration-environment-20-6f32a20e-10d4-4ae6-b036-39ea2d6938f0 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 264s nova [W] Timed out waiting for 84ef8c4f-5b2e-4d14-b194-16a8b1207521 to get deleted.