0s autopkgtest [23:10:45]: starting date and time: 2025-05-03 23:10:45+0000
  0s autopkgtest [23:10:45]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [23:10:45]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.262af5yb/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck,src:r-bioc-graph,src:r-bioc-iranges,src:r-bioc-pwalign,src:r-cran-rlang,src:r-cran-seurat,src:r-cran-sf --apt-upgrade r-cran-sdmtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2 r-bioc-graph/1.84.1-2 r-bioc-iranges/2.40.1-3 r-bioc-pwalign/1.2.0-3 r-cran-rlang/1.1.5-3 r-cran-seurat/5.2.1-5 r-cran-sf/1.0-19+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-10.secgroup --name adt-questing-amd64-r-cran-sdmtools-20250503-231045-juju-7f2275-prod-proposed-migration-environment-2-32c181b5-88e7-4ad3-833a-27f53f23ef83 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 53s autopkgtest [23:11:38]: testbed dpkg architecture: amd64
 53s autopkgtest [23:11:38]: testbed apt version: 3.0.0
 53s autopkgtest [23:11:38]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 54s autopkgtest [23:11:39]: testbed release detected to be: None
 54s autopkgtest [23:11:39]: updating testbed package index (apt update)
 55s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 55s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 55s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 55s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 55s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.6 kB]
 55s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [143 kB]
 55s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1395 kB]
 55s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [140 kB]
 55s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [196 kB]
 55s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1420 kB]
 55s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [571 kB]
 56s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [24.0 kB]
 56s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [51.1 kB]
 56s Fetched 4085 kB in 1s (3585 kB/s)
 57s Reading package lists...
 57s autopkgtest [23:11:42]: upgrading testbed (apt dist-upgrade and autopurge)
 58s Reading package lists...
 58s Building dependency tree...
 58s Reading state information...
 58s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 58s Starting 2 pkgProblemResolver with broken count: 0
 58s Done
 59s Entering ResolveByKeep
 59s 
 59s Calculating upgrade...
 59s The following packages will be upgraded:
 59s   cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy
 59s   libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient
 59s   sos
 59s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 59s Need to get 2693 kB of archives.
 59s After this operation, 104 kB disk space will be freed.
 59s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB]
 60s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB]
 60s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB]
 60s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB]
 60s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B]
 60s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB]
 60s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B]
 60s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB]
 60s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB]
 60s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB]
 60s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B]
 60s Preconfiguring packages ...
 60s Fetched 2693 kB in 1s (4406 kB/s)
 61s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 61s Preparing to unpack .../debianutils_5.22_amd64.deb ...
 61s Unpacking debianutils (5.22) over (5.21) ...
 61s Setting up debianutils (5.22) ...
 61s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 61s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ...
 61s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ...
 61s Setting up libsepol2:amd64 (3.8.1-1) ...
 61s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 61s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ...
 61s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ...
 61s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ...
 61s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ...
 61s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ...
 61s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ...
 61s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ...
 61s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ...
 61s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ...
 61s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ...
 62s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ...
 62s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ...
 62s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ...
 62s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ...
 62s Preparing to unpack .../7-sos_4.9.1-1_all.deb ...
 62s Unpacking sos (4.9.1-1) over (4.9.0-6) ...
 62s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ...
 62s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ...
 62s Setting up sos (4.9.1-1) ...
 63s Setting up libnftnl11:amd64 (1.2.9-1) ...
 63s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ...
 64s Setting up python3-lazr.restfulclient (0.14.6-3) ...
 65s Setting up libmbim-glib4:amd64 (1.32.0-1) ...
 65s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ...
 65s Setting up libmbim-proxy (1.32.0-1) ...
 65s Setting up libqmi-glib5:amd64 (1.36.0-1) ...
 65s Setting up libqmi-proxy (1.36.0-1) ...
 65s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 65s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ...
 65s Processing triggers for man-db (2.13.0-1) ...
 67s Reading package lists...
 67s Building dependency tree...
 67s Reading state information...
 68s Starting pkgProblemResolver with broken count: 0
 68s Starting 2 pkgProblemResolver with broken count: 0
 68s Done
 68s Solving dependencies...
 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 68s autopkgtest [23:11:53]: rebooting testbed after setup commands that affected boot
 92s autopkgtest [23:12:17]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 15:05:05 UTC 2025
 94s autopkgtest [23:12:19]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-sdmtools
 96s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-cran-sdmtools 1.1-221.2-1build1 (dsc) [2109 B]
 96s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-cran-sdmtools 1.1-221.2-1build1 (tar) [64.9 kB]
 96s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-cran-sdmtools 1.1-221.2-1build1 (diff) [2056 B]
 96s gpgv: Signature made Sat May 30 19:34:52 2020 UTC
 96s gpgv:                using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
 96s gpgv: Can't check signature: No public key
 96s dpkg-source: warning: cannot verify inline signature for ./r-cran-sdmtools_1.1-221.2-1build1.dsc: no acceptable signature found
 96s autopkgtest [23:12:21]: testing package r-cran-sdmtools version 1.1-221.2-1build1
 97s autopkgtest [23:12:22]: build not needed
 98s autopkgtest [23:12:23]: test pkg-r-autopkgtest: preparing testbed
 98s Reading package lists...
 98s Building dependency tree...
 98s Reading state information...
 99s Starting pkgProblemResolver with broken count: 0
 99s Starting 2 pkgProblemResolver with broken count: 0
 99s Done
 99s The following NEW packages will be installed:
 99s   build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu
 99s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
 99s   g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14
 99s   gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gdal-data gdal-plugins gfortran
 99s   gfortran-14 gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu
 99s   icu-devtools libabsl20230802 libaec0 libaom3 libarmadillo14 libarpack2t64
 99s   libasan8 libavif16 libblas-dev libblas3 libblosc1 libbz2-dev libcairo2
 99s   libcc1-0 libcfitsio10t64 libdatrie1 libdav1d7 libde265-0 libdeflate-dev
 99s   libdeflate0 libfontconfig1 libfreexl1 libfyba0t64 libgav1-1 libgcc-14-dev
 99s   libgdal36 libgeos-c1t64 libgeos3.13.1 libgeotiff5 libgfortran-14-dev
 99s   libgfortran5 libgif7 libgomp1 libgpgmepp6t64 libgraphite2-3 libharfbuzz0b
 99s   libhdf4-0-alt libhdf5-310 libhdf5-hl-310 libheif-plugin-aomdec
 99s   libheif-plugin-libde265 libheif1 libhwasan0 libice6 libicu-dev libisl23
 99s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
 99s   libjpeg8-dev libkmlbase1t64 libkmldom1t64 libkmlengine1t64 liblapack-dev
 99s   liblapack3 liblcms2-2 liblerc4 liblsan0 libltdl7 liblzma-dev libminizip1t64
 99s   libmpc3 libmysqlclient24 libncurses-dev libnetcdf22 libodbc2 libodbcinst2
 99s   libogdi4.1 libopenjp2-7 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
 99s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
 99s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpoppler147 libpq5
 99s   libproj25 libqhull-r8.0 libquadmath0 librav1e0.7 libreadline-dev librttopo1
 99s   libsharpyuv0 libsm6 libsnappy1v5 libspatialite8t64 libstdc++-14-dev
 99s   libsvtav1enc2 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
 99s   libtk8.6 libtsan2 libubsan1 liburiparser1 libwebp7 libxcb-render0
 99s   libxcb-shm0 libxerces-c3.2t64 libxft2 libxrender1 libxss1 libxt6t64 libyuv0
 99s   libzstd-dev littler mysql-common pkg-r-autopkgtest pkgconf pkgconf-bin
 99s   proj-data r-base-core r-base-dev r-cran-lattice r-cran-littler
 99s   r-cran-pkgkitten r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-raster
 99s   r-cran-rcpp r-cran-sdmtools r-cran-sp r-cran-terra unixodbc-common unzip
 99s   x11-common xdg-utils zip zlib1g-dev
 99s 0 upgraded, 167 newly installed, 0 to remove and 0 not upgraded.
 99s Need to get 201 MB of archives.
 99s After this operation, 617 MB of additional disk space will be used.
 99s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB]
100s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
100s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB]
100s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B]
100s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
100s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
100s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB]
100s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB]
100s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB]
100s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB]
101s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB]
101s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB]
101s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB]
101s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB]
101s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB]
101s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB]
101s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB]
102s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB]
102s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
102s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
102s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB]
102s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB]
102s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB]
102s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
102s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
102s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B]
102s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB]
102s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
102s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
102s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB]
102s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB]
102s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB]
103s Get:33 http://ftpmaster.internal/ubuntu questing/universe amd64 gdal-data all 3.10.2+dfsg-1build3 [269 kB]
103s Get:34 http://ftpmaster.internal/ubuntu questing/universe amd64 gdal-plugins amd64 3.10.2+dfsg-1build3 [25.7 kB]
103s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB]
103s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB]
103s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB]
103s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB]
103s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B]
103s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B]
103s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB]
103s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libabsl20230802 amd64 20230802.1-4.2 [567 kB]
103s Get:43 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
103s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libaom3 amd64 3.12.1-1 [1944 kB]
103s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
103s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
103s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 libarpack2t64 amd64 3.9.1-4 [120 kB]
103s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 libarmadillo14 amd64 1:14.2.3+dfsg-1 [105 kB]
103s Get:49 http://ftpmaster.internal/ubuntu questing/universe amd64 libdav1d7 amd64 1.5.1-1 [743 kB]
103s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 libgav1-1 amd64 0.19.0-3 [697 kB]
103s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 librav1e0.7 amd64 0.7.1-9 [1025 kB]
103s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 libsvtav1enc2 amd64 2.3.0+dfsg-1 [2686 kB]
103s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
103s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
103s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libyuv0 amd64 0.0.1904.20250204-1 [354 kB]
103s Get:56 http://ftpmaster.internal/ubuntu questing/universe amd64 libavif16 amd64 1.2.1-1ubuntu1 [140 kB]
103s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB]
103s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libsnappy1v5 amd64 1.2.1-1 [30.4 kB]
103s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 libblosc1 amd64 1.21.5+ds-1build1 [36.2 kB]
103s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB]
103s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
104s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
104s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
104s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
104s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB]
104s Get:66 http://ftpmaster.internal/ubuntu questing/universe amd64 libcfitsio10t64 amd64 4.5.0-5 [629 kB]
104s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB]
104s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libde265-0 amd64 1.0.15-1build5 [285 kB]
104s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB]
104s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB]
104s Get:71 http://ftpmaster.internal/ubuntu questing/universe amd64 libfyba0t64 amd64 4.1.1-11build1 [119 kB]
104s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libminizip1t64 amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [22.9 kB]
104s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libfreexl1 amd64 2.0.0-1build2 [41.7 kB]
104s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libgeos3.13.1 amd64 3.13.1-1 [1017 kB]
104s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libgeos-c1t64 amd64 3.13.1-1 [103 kB]
104s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB]
104s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
104s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
104s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
104s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
104s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB]
104s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
104s Get:83 http://ftpmaster.internal/ubuntu questing/universe amd64 libgeotiff5 amd64 1.7.4-1 [60.2 kB]
104s Get:84 http://ftpmaster.internal/ubuntu questing/main amd64 libgif7 amd64 5.2.2-1ubuntu2 [36.0 kB]
104s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
104s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf4-0-alt amd64 4.3.0-1 [285 kB]
104s Get:87 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
104s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libheif-plugin-aomdec amd64 1.19.7-1 [11.6 kB]
104s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libheif-plugin-libde265 amd64 1.19.7-1 [9060 B]
104s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libheif1 amd64 1.19.7-1 [428 kB]
104s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 liburiparser1 amd64 0.9.8+dfsg-2 [46.8 kB]
104s Get:92 http://ftpmaster.internal/ubuntu questing/universe amd64 libkmlbase1t64 amd64 1.3.0-12build1 [49.9 kB]
104s Get:93 http://ftpmaster.internal/ubuntu questing/universe amd64 libkmldom1t64 amd64 1.3.0-12build1 [156 kB]
104s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 libkmlengine1t64 amd64 1.3.0-12build1 [71.4 kB]
104s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 mysql-common all 5.8+1.1.1ubuntu1 [6922 B]
104s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libmysqlclient24 amd64 8.4.4-0ubuntu2 [1257 kB]
104s Get:97 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
104s Get:98 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB]
104s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB]
104s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libodbc2 amd64 2.3.12-2ubuntu1 [186 kB]
104s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 unixodbc-common all 2.3.12-2ubuntu1 [9044 B]
104s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 libodbcinst2 amd64 2.3.12-2ubuntu1 [34.1 kB]
104s Get:103 http://ftpmaster.internal/ubuntu questing/universe amd64 libogdi4.1 amd64 4.1.1+ds-5 [219 kB]
105s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB]
105s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libgpgmepp6t64 amd64 1.24.2-1ubuntu2 [126 kB]
105s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
105s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libpoppler147 amd64 25.03.0-4 [1214 kB]
105s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libpq5 amd64 17.4-1 [155 kB]
105s Get:109 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
105s Get:110 http://ftpmaster.internal/ubuntu questing/universe amd64 librttopo1 amd64 1.1.0-4 [205 kB]
105s Get:111 http://ftpmaster.internal/ubuntu questing/universe amd64 libspatialite8t64 amd64 5.1.0-3build1 [1919 kB]
105s Get:112 http://ftpmaster.internal/ubuntu questing/universe amd64 libxerces-c3.2t64 amd64 3.2.4+debian-1.3build1 [1028 kB]
105s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libgdal36 amd64 3.10.2+dfsg-1build3 [10.3 MB]
105s Get:114 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
105s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
105s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
105s Get:117 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
105s Get:118 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB]
106s Get:119 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB]
106s Get:120 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B]
106s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B]
106s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB]
106s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB]
106s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB]
106s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB]
106s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB]
106s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB]
106s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB]
106s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB]
106s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB]
106s Get:131 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
106s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB]
106s Get:133 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B]
106s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB]
106s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB]
106s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
106s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB]
106s Get:138 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB]
106s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
106s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
106s Get:141 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
106s Get:142 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
106s Get:143 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
106s Get:144 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB]
106s Get:145 http://ftpmaster.internal/ubuntu questing/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB]
106s Get:146 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB]
106s Get:147 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB]
106s Get:148 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
106s Get:149 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB]
108s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB]
108s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 littler all 0.3.20-2 [2554 B]
108s Get:152 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB]
108s Get:153 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB]
108s Get:154 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB]
108s Get:155 http://ftpmaster.internal/ubuntu questing/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB]
108s Get:156 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B]
108s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
108s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB]
108s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
108s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB]
108s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.oo all 1.27.0-1 [979 kB]
108s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB]
108s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sp amd64 1:2.2-0+dfsg-1 [1444 kB]
108s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB]
108s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-terra amd64 1.8-29-1 [4306 kB]
108s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-raster amd64 3.6-31-1 [3176 kB]
108s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sdmtools amd64 1.1-221.2-1build1 [229 kB]
109s Preconfiguring packages ...
109s Fetched 201 MB in 9s (22.7 MB/s)
109s Selecting previously unselected package libisl23:amd64.
109s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80518 files and directories currently installed.)
109s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ...
109s Unpacking libisl23:amd64 (0.27-1) ...
109s Selecting previously unselected package libmpc3:amd64.
109s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ...
109s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
109s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
109s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
109s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
109s Selecting previously unselected package cpp-14.
109s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_amd64.deb ...
109s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
109s Selecting previously unselected package cpp-x86-64-linux-gnu.
109s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
109s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
109s Selecting previously unselected package cpp.
109s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
109s Unpacking cpp (4:14.2.0-1ubuntu1) ...
109s Selecting previously unselected package libcc1-0:amd64.
109s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_amd64.deb ...
109s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ...
109s Selecting previously unselected package libgomp1:amd64.
109s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_amd64.deb ...
109s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libitm1:amd64.
110s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libasan8:amd64.
110s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package liblsan0:amd64.
110s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libtsan2:amd64.
110s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libubsan1:amd64.
110s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libhwasan0:amd64.
110s Preparing to unpack .../013-libhwasan0_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libquadmath0:amd64.
110s Preparing to unpack .../014-libquadmath0_15-20250404-0ubuntu1_amd64.deb ...
110s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ...
110s Selecting previously unselected package libgcc-14-dev:amd64.
110s Preparing to unpack .../015-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ...
110s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ...
110s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
110s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
110s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
110s Selecting previously unselected package gcc-14.
110s Preparing to unpack .../017-gcc-14_14.2.0-19ubuntu2_amd64.deb ...
110s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
111s Selecting previously unselected package gcc-x86-64-linux-gnu.
111s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
111s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
111s Selecting previously unselected package gcc.
111s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
111s Unpacking gcc (4:14.2.0-1ubuntu1) ...
111s Selecting previously unselected package libstdc++-14-dev:amd64.
111s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ...
111s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ...
111s Selecting previously unselected package g++-14-x86-64-linux-gnu.
111s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
111s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
111s Selecting previously unselected package g++-14.
111s Preparing to unpack .../022-g++-14_14.2.0-19ubuntu2_amd64.deb ...
111s Unpacking g++-14 (14.2.0-19ubuntu2) ...
111s Selecting previously unselected package g++-x86-64-linux-gnu.
111s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
111s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
111s Selecting previously unselected package g++.
111s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
111s Unpacking g++ (4:14.2.0-1ubuntu1) ...
111s Selecting previously unselected package build-essential.
111s Preparing to unpack .../025-build-essential_12.12ubuntu1_amd64.deb ...
111s Unpacking build-essential (12.12ubuntu1) ...
111s Selecting previously unselected package dctrl-tools.
111s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ...
111s Unpacking dctrl-tools (2.24-3build3) ...
111s Selecting previously unselected package fonts-dejavu-mono.
111s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ...
111s Unpacking fonts-dejavu-mono (2.37-8) ...
111s Selecting previously unselected package fonts-dejavu-core.
111s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ...
111s Unpacking fonts-dejavu-core (2.37-8) ...
111s Selecting previously unselected package fontconfig-config.
111s Preparing to unpack .../029-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ...
112s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
112s Selecting previously unselected package libfontconfig1:amd64.
112s Preparing to unpack .../030-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ...
112s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
112s Selecting previously unselected package fontconfig.
112s Preparing to unpack .../031-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ...
112s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
112s Selecting previously unselected package gdal-data.
112s Preparing to unpack .../032-gdal-data_3.10.2+dfsg-1build3_all.deb ...
112s Unpacking gdal-data (3.10.2+dfsg-1build3) ...
112s Selecting previously unselected package gdal-plugins:amd64.
112s Preparing to unpack .../033-gdal-plugins_3.10.2+dfsg-1build3_amd64.deb ...
112s Unpacking gdal-plugins:amd64 (3.10.2+dfsg-1build3) ...
112s Selecting previously unselected package libgfortran5:amd64.
112s Preparing to unpack .../034-libgfortran5_15-20250404-0ubuntu1_amd64.deb ...
112s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ...
112s Selecting previously unselected package libgfortran-14-dev:amd64.
112s Preparing to unpack .../035-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ...
112s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ...
112s Selecting previously unselected package gfortran-14-x86-64-linux-gnu.
112s Preparing to unpack .../036-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
112s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
112s Selecting previously unselected package gfortran-14.
112s Preparing to unpack .../037-gfortran-14_14.2.0-19ubuntu2_amd64.deb ...
112s Unpacking gfortran-14 (14.2.0-19ubuntu2) ...
112s Selecting previously unselected package gfortran-x86-64-linux-gnu.
112s Preparing to unpack .../038-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
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112s Selecting previously unselected package icu-devtools.
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112s Selecting previously unselected package libabsl20230802:amd64.
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112s Selecting previously unselected package libaec0:amd64.
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112s Selecting previously unselected package libaom3:amd64.
112s Preparing to unpack .../043-libaom3_3.12.1-1_amd64.deb ...
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112s Selecting previously unselected package libblas3:amd64.
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112s Selecting previously unselected package liblapack3:amd64.
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113s Selecting previously unselected package libarpack2t64:amd64.
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113s Selecting previously unselected package librav1e0.7:amd64.
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113s Selecting previously unselected package libjpeg-turbo8:amd64.
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113s Selecting previously unselected package libyuv0:amd64.
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113s Selecting previously unselected package libpixman-1-0:amd64.
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113s Selecting previously unselected package libxcb-render0:amd64.
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113s Selecting previously unselected package libxcb-shm0:amd64.
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113s Selecting previously unselected package libxrender1:amd64.
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113s Selecting previously unselected package libcairo2:amd64.
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113s Selecting previously unselected package libcfitsio10t64:amd64.
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113s Selecting previously unselected package libdatrie1:amd64.
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113s Selecting previously unselected package libdeflate-dev:amd64.
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114s Selecting previously unselected package libfyba0t64:amd64.
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114s Selecting previously unselected package libminizip1t64:amd64.
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114s Selecting previously unselected package libfreexl1:amd64.
114s Preparing to unpack .../072-libfreexl1_2.0.0-1build2_amd64.deb ...
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114s Selecting previously unselected package libgeos3.13.1:amd64.
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114s Selecting previously unselected package libgeos-c1t64:amd64.
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114s Selecting previously unselected package proj-data.
114s Preparing to unpack .../075-proj-data_9.5.1-1_all.deb ...
114s Unpacking proj-data (9.5.1-1) ...
114s Selecting previously unselected package libjbig0:amd64.
114s Preparing to unpack .../076-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
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114s Selecting previously unselected package liblerc4:amd64.
114s Preparing to unpack .../077-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
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114s Selecting previously unselected package libsharpyuv0:amd64.
114s Preparing to unpack .../078-libsharpyuv0_1.5.0-0.1_amd64.deb ...
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114s Selecting previously unselected package libwebp7:amd64.
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114s Selecting previously unselected package libtiff6:amd64.
114s Preparing to unpack .../080-libtiff6_4.7.0-3ubuntu1_amd64.deb ...
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114s Selecting previously unselected package libproj25:amd64.
114s Preparing to unpack .../081-libproj25_9.5.1-1_amd64.deb ...
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114s Selecting previously unselected package libgeotiff5:amd64.
114s Preparing to unpack .../082-libgeotiff5_1.7.4-1_amd64.deb ...
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114s Selecting previously unselected package libgif7:amd64.
114s Preparing to unpack .../083-libgif7_5.2.2-1ubuntu2_amd64.deb ...
114s Unpacking libgif7:amd64 (5.2.2-1ubuntu2) ...
114s Selecting previously unselected package libsz2:amd64.
114s Preparing to unpack .../084-libsz2_1.1.3-1_amd64.deb ...
114s Unpacking libsz2:amd64 (1.1.3-1) ...
114s Selecting previously unselected package libhdf4-0-alt:amd64.
114s Preparing to unpack .../085-libhdf4-0-alt_4.3.0-1_amd64.deb ...
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114s Selecting previously unselected package libhdf5-310:amd64.
114s Preparing to unpack .../086-libhdf5-310_1.14.5+repack-3_amd64.deb ...
114s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
114s Selecting previously unselected package libheif-plugin-aomdec:amd64.
114s Preparing to unpack .../087-libheif-plugin-aomdec_1.19.7-1_amd64.deb ...
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114s Selecting previously unselected package libheif-plugin-libde265:amd64.
114s Preparing to unpack .../088-libheif-plugin-libde265_1.19.7-1_amd64.deb ...
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114s Selecting previously unselected package libheif1:amd64.
114s Preparing to unpack .../089-libheif1_1.19.7-1_amd64.deb ...
114s Unpacking libheif1:amd64 (1.19.7-1) ...
114s Selecting previously unselected package liburiparser1:amd64.
114s Preparing to unpack .../090-liburiparser1_0.9.8+dfsg-2_amd64.deb ...
114s Unpacking liburiparser1:amd64 (0.9.8+dfsg-2) ...
114s Selecting previously unselected package libkmlbase1t64:amd64.
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114s Unpacking libkmlbase1t64:amd64 (1.3.0-12build1) ...
114s Selecting previously unselected package libkmldom1t64:amd64.
114s Preparing to unpack .../092-libkmldom1t64_1.3.0-12build1_amd64.deb ...
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114s Selecting previously unselected package libkmlengine1t64:amd64.
114s Preparing to unpack .../093-libkmlengine1t64_1.3.0-12build1_amd64.deb ...
114s Unpacking libkmlengine1t64:amd64 (1.3.0-12build1) ...
114s Selecting previously unselected package mysql-common.
114s Preparing to unpack .../094-mysql-common_5.8+1.1.1ubuntu1_all.deb ...
114s Unpacking mysql-common (5.8+1.1.1ubuntu1) ...
115s Selecting previously unselected package libmysqlclient24:amd64.
115s Preparing to unpack .../095-libmysqlclient24_8.4.4-0ubuntu2_amd64.deb ...
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115s Selecting previously unselected package libhdf5-hl-310:amd64.
115s Preparing to unpack .../096-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
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115s Selecting previously unselected package libnetcdf22:amd64.
115s Preparing to unpack .../097-libnetcdf22_1%3a4.9.3-1_amd64.deb ...
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115s Selecting previously unselected package libltdl7:amd64.
115s Preparing to unpack .../098-libltdl7_2.5.4-4_amd64.deb ...
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115s Selecting previously unselected package libodbc2:amd64.
115s Preparing to unpack .../099-libodbc2_2.3.12-2ubuntu1_amd64.deb ...
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115s Selecting previously unselected package unixodbc-common.
115s Preparing to unpack .../100-unixodbc-common_2.3.12-2ubuntu1_all.deb ...
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115s Selecting previously unselected package libodbcinst2:amd64.
115s Preparing to unpack .../101-libodbcinst2_2.3.12-2ubuntu1_amd64.deb ...
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115s Selecting previously unselected package libogdi4.1:amd64.
115s Preparing to unpack .../102-libogdi4.1_4.1.1+ds-5_amd64.deb ...
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115s Selecting previously unselected package libopenjp2-7:amd64.
115s Preparing to unpack .../103-libopenjp2-7_2.5.3-2_amd64.deb ...
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115s Selecting previously unselected package libgpgmepp6t64:amd64.
115s Preparing to unpack .../104-libgpgmepp6t64_1.24.2-1ubuntu2_amd64.deb ...
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115s Selecting previously unselected package liblcms2-2:amd64.
115s Preparing to unpack .../105-liblcms2-2_2.16-2_amd64.deb ...
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115s Selecting previously unselected package libpoppler147:amd64.
115s Preparing to unpack .../106-libpoppler147_25.03.0-4_amd64.deb ...
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115s Selecting previously unselected package libpq5:amd64.
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115s Selecting previously unselected package libqhull-r8.0:amd64.
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115s Selecting previously unselected package librttopo1:amd64.
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115s Selecting previously unselected package libspatialite8t64:amd64.
115s Preparing to unpack .../110-libspatialite8t64_5.1.0-3build1_amd64.deb ...
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115s Selecting previously unselected package libxerces-c3.2t64:amd64.
115s Preparing to unpack .../111-libxerces-c3.2t64_3.2.4+debian-1.3build1_amd64.deb ...
115s Unpacking libxerces-c3.2t64:amd64 (3.2.4+debian-1.3build1) ...
115s Selecting previously unselected package libgdal36:amd64.
115s Preparing to unpack .../112-libgdal36_3.10.2+dfsg-1build3_amd64.deb ...
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115s Selecting previously unselected package libgraphite2-3:amd64.
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115s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
115s Selecting previously unselected package libharfbuzz0b:amd64.
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115s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
116s Selecting previously unselected package x11-common.
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116s Selecting previously unselected package libice6:amd64.
116s Preparing to unpack .../116-libice6_2%3a1.1.1-1_amd64.deb ...
116s Unpacking libice6:amd64 (2:1.1.1-1) ...
116s Selecting previously unselected package libicu-dev:amd64.
116s Preparing to unpack .../117-libicu-dev_76.1-1ubuntu2_amd64.deb ...
116s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ...
116s Selecting previously unselected package libjpeg-turbo8-dev:amd64.
116s Preparing to unpack .../118-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ...
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116s Selecting previously unselected package libjpeg8-dev:amd64.
116s Preparing to unpack .../119-libjpeg8-dev_8c-2ubuntu11_amd64.deb ...
116s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ...
116s Selecting previously unselected package libjpeg-dev:amd64.
116s Preparing to unpack .../120-libjpeg-dev_8c-2ubuntu11_amd64.deb ...
116s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ...
116s Selecting previously unselected package liblapack-dev:amd64.
116s Preparing to unpack .../121-liblapack-dev_3.12.1-2_amd64.deb ...
116s Unpacking liblapack-dev:amd64 (3.12.1-2) ...
116s Selecting previously unselected package libncurses-dev:amd64.
116s Preparing to unpack .../122-libncurses-dev_6.5+20250216-2_amd64.deb ...
116s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ...
116s Selecting previously unselected package libthai-data.
116s Preparing to unpack .../123-libthai-data_0.1.29-2build1_all.deb ...
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116s Selecting previously unselected package libthai0:amd64.
116s Preparing to unpack .../124-libthai0_0.1.29-2build1_amd64.deb ...
116s Unpacking libthai0:amd64 (0.1.29-2build1) ...
116s Selecting previously unselected package libpango-1.0-0:amd64.
116s Preparing to unpack .../125-libpango-1.0-0_1.56.3-1_amd64.deb ...
116s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ...
116s Selecting previously unselected package libpangoft2-1.0-0:amd64.
116s Preparing to unpack .../126-libpangoft2-1.0-0_1.56.3-1_amd64.deb ...
116s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ...
116s Selecting previously unselected package libpangocairo-1.0-0:amd64.
116s Preparing to unpack .../127-libpangocairo-1.0-0_1.56.3-1_amd64.deb ...
116s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ...
116s Selecting previously unselected package libpaper2:amd64.
116s Preparing to unpack .../128-libpaper2_2.2.5-0.3_amd64.deb ...
116s Unpacking libpaper2:amd64 (2.2.5-0.3) ...
116s Selecting previously unselected package libpaper-utils.
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116s Selecting previously unselected package libpcre2-16-0:amd64.
116s Preparing to unpack .../130-libpcre2-16-0_10.45-1_amd64.deb ...
116s Unpacking libpcre2-16-0:amd64 (10.45-1) ...
117s Selecting previously unselected package libpcre2-32-0:amd64.
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117s Unpacking libpcre2-32-0:amd64 (10.45-1) ...
117s Selecting previously unselected package libpcre2-posix3:amd64.
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117s Unpacking libpcre2-posix3:amd64 (10.45-1) ...
117s Selecting previously unselected package libpcre2-dev:amd64.
117s Preparing to unpack .../133-libpcre2-dev_10.45-1_amd64.deb ...
117s Unpacking libpcre2-dev:amd64 (10.45-1) ...
117s Selecting previously unselected package libpkgconf3:amd64.
117s Preparing to unpack .../134-libpkgconf3_1.8.1-4_amd64.deb ...
117s Unpacking libpkgconf3:amd64 (1.8.1-4) ...
117s Selecting previously unselected package zlib1g-dev:amd64.
117s Preparing to unpack .../135-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ...
117s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
117s Selecting previously unselected package libpng-dev:amd64.
117s Preparing to unpack .../136-libpng-dev_1.6.47-1.1_amd64.deb ...
117s Unpacking libpng-dev:amd64 (1.6.47-1.1) ...
117s Selecting previously unselected package libreadline-dev:amd64.
117s Preparing to unpack .../137-libreadline-dev_8.2-6_amd64.deb ...
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117s Selecting previously unselected package libsm6:amd64.
117s Preparing to unpack .../138-libsm6_2%3a1.2.4-1_amd64.deb ...
117s Unpacking libsm6:amd64 (2:1.2.4-1) ...
117s Selecting previously unselected package libtcl8.6:amd64.
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117s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
117s Selecting previously unselected package libxft2:amd64.
117s Preparing to unpack .../140-libxft2_2.3.6-1build1_amd64.deb ...
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117s Selecting previously unselected package libxss1:amd64.
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122s Regenerating fonts cache... done.
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122s Setting up r-base-core (4.5.0-3) ...
122s Creating config file /etc/R/Renviron with new version
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122s Setting up littler (0.3.20-2) ...
122s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
122s Setting up gcc (4:14.2.0-1ubuntu1) ...
122s Setting up r-cran-r.methodss3 (1.8.2-1) ...
122s Setting up r-cran-sp (1:2.2-0+dfsg-1) ...
122s Setting up g++ (4:14.2.0-1ubuntu1) ...
122s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
122s Setting up build-essential (12.12ubuntu1) ...
122s Setting up r-cran-r.oo (1.27.0-1) ...
122s Setting up gfortran (4:14.2.0-1ubuntu1) ...
122s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
122s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
122s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
122s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
122s Setting up r-cran-r.utils (2.13.0-1) ...
122s Setting up r-base-dev (4.5.0-3) ...
122s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
122s Setting up r-cran-sdmtools (1.1-221.2-1build1) ...
122s Setting up libheif-plugin-aomdec:amd64 (1.19.7-1) ...
122s Setting up libheif-plugin-libde265:amd64 (1.19.7-1) ...
122s Setting up libheif1:amd64 (1.19.7-1) ...
122s Setting up libgdal36:amd64 (3.10.2+dfsg-1build3) ...
122s Setting up r-cran-terra (1.8-29-1) ...
122s Setting up r-cran-raster (3.6-31-1) ...
122s Processing triggers for install-info (7.1.1-1) ...
122s Processing triggers for libc-bin (2.41-6ubuntu1) ...
122s Processing triggers for man-db (2.13.0-1) ...
125s autopkgtest [23:12:50]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
125s autopkgtest [23:12:50]: test pkg-r-autopkgtest: [-----------------------
125s Test: Try to load the R library SDMTools
126s 
126s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six"
126s Copyright (C) 2025 The R Foundation for Statistical Computing
126s Platform: x86_64-pc-linux-gnu
126s 
126s R is free software and comes with ABSOLUTELY NO WARRANTY.
126s You are welcome to redistribute it under certain conditions.
126s Type 'license()' or 'licence()' for distribution details.
126s 
126s R is a collaborative project with many contributors.
126s Type 'contributors()' for more information and
126s 'citation()' on how to cite R or R packages in publications.
126s 
126s Type 'demo()' for some demos, 'help()' for on-line help, or
126s 'help.start()' for an HTML browser interface to help.
126s Type 'q()' to quit R.
126s 
126s > library('SDMTools')
126s > 
126s Other tests are currently unsupported!
126s They will be progressively added.
126s autopkgtest [23:12:51]: test pkg-r-autopkgtest: -----------------------]
126s pkg-r-autopkgtest    PASS
126s autopkgtest [23:12:51]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
127s autopkgtest [23:12:52]: @@@@@@@@@@@@@@@@@@@@ summary
127s pkg-r-autopkgtest    PASS
144s nova [W] Skipping flock for amd64
144s Creating nova instance adt-questing-amd64-r-cran-sdmtools-20250503-231045-juju-7f2275-prod-proposed-migration-environment-2-32c181b5-88e7-4ad3-833a-27f53f23ef83 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)...
144s nova [W] Timed out waiting for 89895aa2-428f-4039-980b-57d696f64017 to get deleted.