0s autopkgtest [22:13:00]: starting date and time: 2025-05-03 22:13:00+0000 0s autopkgtest [22:13:00]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [22:13:00]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.y0vz8ffx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck,src:r-bioc-graph,src:r-bioc-iranges,src:r-bioc-pwalign,src:r-cran-rlang,src:r-cran-seurat,src:r-cran-sf --apt-upgrade r-bioc-keggrest --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2 r-bioc-graph/1.84.1-2 r-bioc-iranges/2.40.1-3 r-bioc-pwalign/1.2.0-3 r-cran-rlang/1.1.5-3 r-cran-seurat/5.2.1-5 r-cran-sf/1.0-19+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-12.secgroup --name adt-questing-amd64-r-bioc-keggrest-20250503-221300-juju-7f2275-prod-proposed-migration-environment-23-1d0590d5-8dd3-416a-a21d-a2bbb5505ccf --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 47s autopkgtest [22:13:47]: testbed dpkg architecture: amd64 48s autopkgtest [22:13:48]: testbed apt version: 3.0.0 48s autopkgtest [22:13:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 48s autopkgtest [22:13:48]: testbed release detected to be: None 49s autopkgtest [22:13:49]: updating testbed package index (apt update) 49s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 49s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 50s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 50s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 50s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1412 kB] 50s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.6 kB] 50s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 50s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [201 kB] 50s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [145 kB] 50s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1422 kB] 50s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [573 kB] 50s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [51.1 kB] 50s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [24.0 kB] 50s Fetched 4118 kB in 1s (3710 kB/s) 51s Reading package lists... 52s autopkgtest [22:13:52]: upgrading testbed (apt dist-upgrade and autopurge) 52s Reading package lists... 52s Building dependency tree... 52s Reading state information... 52s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 52s Starting 2 pkgProblemResolver with broken count: 0 52s Done 53s Entering ResolveByKeep 53s 53s Calculating upgrade... 53s The following packages will be upgraded: 53s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 53s libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient 53s sos 54s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 54s Need to get 2693 kB of archives. 54s After this operation, 104 kB disk space will be freed. 54s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 54s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 54s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 54s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 54s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 54s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 54s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 54s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 54s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 54s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 54s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 54s Preconfiguring packages ... 55s Fetched 2693 kB in 1s (4365 kB/s) 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 55s Preparing to unpack .../debianutils_5.22_amd64.deb ... 55s Unpacking debianutils (5.22) over (5.21) ... 55s Setting up debianutils (5.22) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 55s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 55s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 55s Setting up libsepol2:amd64 (3.8.1-1) ... 55s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 55s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 55s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 55s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 55s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 55s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 55s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 56s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 56s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 56s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 56s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 56s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 56s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 56s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 56s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 56s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 56s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 56s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 56s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 56s Setting up sos (4.9.1-1) ... 57s Setting up libnftnl11:amd64 (1.2.9-1) ... 57s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 58s Setting up python3-lazr.restfulclient (0.14.6-3) ... 58s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 58s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 58s Setting up libmbim-proxy (1.32.0-1) ... 58s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 58s Setting up libqmi-proxy (1.36.0-1) ... 58s Processing triggers for libc-bin (2.41-6ubuntu1) ... 58s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 59s Processing triggers for man-db (2.13.0-1) ... 60s Reading package lists... 61s Building dependency tree... 61s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s Solving dependencies... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 62s autopkgtest [22:14:02]: rebooting testbed after setup commands that affected boot 85s autopkgtest [22:14:25]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 87s autopkgtest [22:14:27]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-keggrest 89s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-keggrest 1.46.0+dfsg-2 (dsc) [2147 B] 89s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-keggrest 1.46.0+dfsg-2 (tar) [16.4 kB] 89s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-keggrest 1.46.0+dfsg-2 (diff) [5980 B] 89s gpgv: Signature made Sun Jan 12 19:16:45 2025 UTC 89s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 89s gpgv: issuer "crusoe@debian.org" 89s gpgv: Can't check signature: No public key 89s dpkg-source: warning: cannot verify inline signature for ./r-bioc-keggrest_1.46.0+dfsg-2.dsc: no acceptable signature found 89s autopkgtest [22:14:29]: testing package r-bioc-keggrest version 1.46.0+dfsg-2 89s autopkgtest [22:14:29]: build not needed 90s autopkgtest [22:14:30]: test pkg-r-autopkgtest: preparing testbed 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 91s The following NEW packages will be installed: 91s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 91s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 91s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 91s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 91s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 91s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 91s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 91s libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0 91s libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 91s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 91s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 91s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 91s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 91s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 91s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 91s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 91s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 91s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libmpfi0 libncurses-dev 91s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 91s libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 91s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libquadmath0 91s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6 91s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 91s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 91s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 libzstd-dev 91s libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 91s node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin 91s r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle 91s r-bioc-biocversion r-bioc-biostrings r-bioc-genomeinfodb 91s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-s4vectors 91s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 91s r-cran-base64enc r-cran-biocmanager r-cran-bookdown r-cran-bslib 91s r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-curl 91s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 91s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 91s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle 91s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-memoise r-cran-mime 91s r-cran-openssl r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 91s r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown r-cran-runit 91s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-tinytex 91s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml t1utils tex-common 91s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 91s x11-common xdg-utils zip zlib1g-dev 91s 0 upgraded, 212 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 365 MB of archives. 91s After this operation, 1087 MB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 92s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 92s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 93s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 93s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 93s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 93s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB] 93s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 93s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 93s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 93s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 93s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 93s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 93s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 93s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 93s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 93s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 94s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 94s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 94s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 94s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 94s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB] 95s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB] 95s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 95s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 95s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 95s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 95s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 95s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 95s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 95s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 95s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 95s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 95s Get:34 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 95s Get:35 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 96s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 96s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 96s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB] 96s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB] 97s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB] 97s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 97s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 97s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 97s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 javascript-common all 12 [5216 B] 97s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 97s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 97s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 97s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 97s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 97s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 97s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 97s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 97s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 97s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 97s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 97s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 97s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 97s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 97s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 97s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 97s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 97s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 97s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 97s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 97s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 97s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 97s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 97s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 97s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 97s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 97s Get:71 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-5 [531 kB] 98s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 98s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 98s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 98s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 98s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 98s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 98s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 98s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 98s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 98s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 98s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 98s Get:83 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 98s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 98s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 98s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 98s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 98s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 98s Get:89 http://ftpmaster.internal/ubuntu questing/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 98s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 98s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 98s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 98s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 98s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 98s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 98s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 98s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 98s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 98s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 98s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 98s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 99s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 99s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 99s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB] 99s Get:105 http://ftpmaster.internal/ubuntu questing/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 99s Get:106 http://ftpmaster.internal/ubuntu questing/universe amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 99s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 99s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 99s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 99s Get:110 http://ftpmaster.internal/ubuntu questing/universe amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 99s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 99s Get:112 http://ftpmaster.internal/ubuntu questing/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 99s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 99s Get:114 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 99s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 99s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 99s Get:117 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 99s Get:118 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 99s Get:119 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 99s Get:120 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 99s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 99s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 99s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 99s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 99s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 99s Get:126 http://ftpmaster.internal/ubuntu questing/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 99s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 99s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 99s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 99s Get:130 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB] 100s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 100s Get:132 http://ftpmaster.internal/ubuntu questing/universe amd64 littler all 0.3.20-2 [2554 B] 100s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 100s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 100s Get:135 http://ftpmaster.internal/ubuntu questing/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 100s Get:136 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 100s Get:137 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 101s Get:138 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB] 101s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 101s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 101s Get:141 http://ftpmaster.internal/ubuntu questing/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 101s Get:142 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B] 101s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 101s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 101s Get:145 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 101s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 101s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 101s Get:148 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 101s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 101s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 101s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 101s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 101s Get:153 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 101s Get:154 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 101s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-knitr all 1.50+dfsg-1 [840 kB] 101s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 101s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 101s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 101s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 101s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 101s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 101s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 101s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 101s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 101s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 101s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 101s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 101s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bslib all 0.9.0+dfsg-1syncable1 [4563 kB] 101s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 101s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 101s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 101s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 101s Get:173 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 102s Get:174 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 102s Get:175 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 102s Get:176 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 102s Get:177 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 102s Get:178 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 102s Get:179 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 102s Get:180 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 102s Get:181 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 102s Get:182 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 102s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 102s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 102s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 102s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 102s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 102s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 tex-common all 6.19 [29.8 kB] 102s Get:189 http://ftpmaster.internal/ubuntu questing/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 102s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 102s Get:191 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-base all 2024.20250309-1 [22.7 MB] 103s Get:192 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-latex-base all 2024.20250309-1 [1276 kB] 103s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB] 104s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 104s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 104s Get:196 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 105s Get:197 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 105s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 105s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 105s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 105s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 105s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 105s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 105s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 105s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 105s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 106s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 106s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 106s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 106s Get:210 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 106s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-markdown all 1.13-1 [162 kB] 106s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 107s Preconfiguring packages ... 107s Fetched 365 MB in 15s (24.4 MB/s) 107s Selecting previously unselected package libisl23:amd64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 107s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 107s Unpacking libisl23:amd64 (0.27-1) ... 107s Selecting previously unselected package libmpc3:amd64. 107s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 107s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 107s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 107s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 107s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 107s Selecting previously unselected package cpp-14. 107s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 107s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 108s Selecting previously unselected package cpp-x86-64-linux-gnu. 108s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 108s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 108s Selecting previously unselected package cpp. 108s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 108s Unpacking cpp (4:14.2.0-1ubuntu1) ... 108s Selecting previously unselected package libcc1-0:amd64. 108s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libgomp1:amd64. 108s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libitm1:amd64. 108s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libasan8:amd64. 108s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package liblsan0:amd64. 108s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libtsan2:amd64. 108s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libubsan1:amd64. 108s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libhwasan0:amd64. 108s Preparing to unpack .../013-libhwasan0_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libquadmath0:amd64. 108s Preparing to unpack .../014-libquadmath0_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package libgcc-14-dev:amd64. 108s Preparing to unpack .../015-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ... 108s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 108s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 108s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 108s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 108s Selecting previously unselected package gcc-14. 108s 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.../022-g++-14_14.2.0-19ubuntu2_amd64.deb ... 109s Unpacking g++-14 (14.2.0-19ubuntu2) ... 109s Selecting previously unselected package g++-x86-64-linux-gnu. 109s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 109s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 109s Selecting previously unselected package g++. 109s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 109s Unpacking g++ (4:14.2.0-1ubuntu1) ... 109s Selecting previously unselected package build-essential. 109s Preparing to unpack .../025-build-essential_12.12ubuntu1_amd64.deb ... 109s Unpacking build-essential (12.12ubuntu1) ... 109s Selecting previously unselected package dctrl-tools. 109s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 109s Unpacking dctrl-tools (2.24-3build3) ... 109s Selecting previously unselected package fonts-dejavu-mono. 109s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 109s Unpacking fonts-dejavu-mono (2.37-8) ... 109s Selecting previously unselected package fonts-dejavu-core. 109s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 109s Unpacking fonts-dejavu-core (2.37-8) ... 109s Selecting previously unselected package fontconfig-config. 109s Preparing to unpack .../029-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 109s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 109s Selecting previously unselected package libfontconfig1:amd64. 109s Preparing to unpack .../030-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 109s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 109s Selecting previously unselected package fontconfig. 109s Preparing to unpack .../031-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 109s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 109s Selecting previously unselected package fonts-font-awesome. 110s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 110s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 110s Selecting previously unselected package fonts-glyphicons-halflings. 110s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 110s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 110s Selecting previously unselected package fonts-lmodern. 110s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 110s Unpacking fonts-lmodern (2.005-1) ... 110s Selecting previously unselected package fonts-mathjax. 110s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 110s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 110s Selecting previously unselected package libgfortran5:amd64. 110s Preparing to unpack .../036-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 110s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 110s Selecting previously unselected package libgfortran-14-dev:amd64. 110s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ... 110s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 110s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 110s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 110s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 110s Selecting previously unselected package gfortran-14. 110s Preparing to unpack .../039-gfortran-14_14.2.0-19ubuntu2_amd64.deb ... 110s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 110s Selecting previously unselected package gfortran-x86-64-linux-gnu. 110s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 110s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 110s Selecting previously unselected package gfortran. 110s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 110s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 110s Selecting previously unselected package icu-devtools. 110s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 110s Unpacking icu-devtools (76.1-1ubuntu2) ... 110s Selecting previously unselected package javascript-common. 110s Preparing to unpack .../043-javascript-common_12_all.deb ... 110s Unpacking javascript-common (12) ... 110s Selecting previously unselected package libio-string-perl. 110s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 110s Unpacking libio-string-perl (1.08-4) ... 110s Selecting previously unselected package liblatex-tounicode-perl. 110s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 110s Unpacking liblatex-tounicode-perl (0.55-1) ... 110s Selecting previously unselected package libbibtex-parser-perl. 110s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 110s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 110s Selecting previously unselected package libblas3:amd64. 110s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 110s Unpacking libblas3:amd64 (3.12.1-2) ... 110s Selecting previously unselected package libblas-dev:amd64. 110s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 110s Unpacking libblas-dev:amd64 (3.12.1-2) ... 110s Selecting previously unselected package libbz2-dev:amd64. 110s Preparing to unpack .../049-libbz2-dev_1.0.8-6_amd64.deb ... 110s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 110s Selecting previously unselected package libpixman-1-0:amd64. 110s Preparing to unpack .../050-libpixman-1-0_0.44.0-3_amd64.deb ... 110s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 110s Selecting previously unselected package libxcb-render0:amd64. 110s Preparing to unpack .../051-libxcb-render0_1.17.0-2_amd64.deb ... 110s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 110s Selecting previously unselected package libxcb-shm0:amd64. 110s Preparing to unpack .../052-libxcb-shm0_1.17.0-2_amd64.deb ... 110s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 110s Selecting previously unselected package libxrender1:amd64. 110s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 110s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 110s Selecting previously unselected package libcairo2:amd64. 110s Preparing to unpack .../054-libcairo2_1.18.4-1_amd64.deb ... 110s Unpacking libcairo2:amd64 (1.18.4-1) ... 110s Selecting previously unselected package libdatrie1:amd64. 110s Preparing to unpack .../055-libdatrie1_0.2.13-3build1_amd64.deb ... 110s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 110s Selecting previously unselected package libdeflate0:amd64. 111s Preparing to unpack .../056-libdeflate0_1.23-2_amd64.deb ... 111s Unpacking libdeflate0:amd64 (1.23-2) ... 111s Selecting previously unselected package libdeflate-dev:amd64. 111s Preparing to unpack .../057-libdeflate-dev_1.23-2_amd64.deb ... 111s Unpacking libdeflate-dev:amd64 (1.23-2) ... 111s Selecting previously unselected package libgraphite2-3:amd64. 111s Preparing to unpack .../058-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 111s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 111s Selecting previously unselected package libharfbuzz0b:amd64. 111s Preparing to unpack .../059-libharfbuzz0b_10.2.0-1_amd64.deb ... 111s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 111s Selecting previously unselected package x11-common. 111s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu4_all.deb ... 111s Unpacking x11-common (1:7.7+23ubuntu4) ... 111s Selecting previously unselected package libice6:amd64. 111s Preparing to unpack .../061-libice6_2%3a1.1.1-1_amd64.deb ... 111s Unpacking libice6:amd64 (2:1.1.1-1) ... 111s Selecting previously unselected package libicu-dev:amd64. 111s Preparing to unpack .../062-libicu-dev_76.1-1ubuntu2_amd64.deb ... 111s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 111s Selecting previously unselected package libjpeg-turbo8:amd64. 111s Preparing to unpack .../063-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 111s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 111s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 111s Preparing to unpack .../064-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 111s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 111s Selecting previously unselected package libjpeg8:amd64. 111s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_amd64.deb ... 111s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libjpeg8-dev:amd64. 111s Preparing to unpack .../066-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 111s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libjpeg-dev:amd64. 111s Preparing to unpack .../067-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 111s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libjs-bootstrap. 111s Preparing to unpack .../068-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 111s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 111s Selecting previously unselected package libjs-popper.js. 111s Preparing to unpack .../069-libjs-popper.js_1.16.1+ds-6_all.deb ... 111s Unpacking libjs-popper.js (1.16.1+ds-6) ... 111s Selecting previously unselected package libjs-bootstrap4. 111s Preparing to unpack .../070-libjs-bootstrap4_4.6.1+dfsg1-5_all.deb ... 111s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-5) ... 111s Selecting previously unselected package libjs-d3. 111s Preparing to unpack .../071-libjs-d3_3.5.17-4_all.deb ... 111s Unpacking libjs-d3 (3.5.17-4) ... 111s Selecting previously unselected package libjs-es5-shim. 111s Preparing to unpack .../072-libjs-es5-shim_4.6.7-2_all.deb ... 111s Unpacking libjs-es5-shim (4.6.7-2) ... 111s Selecting previously unselected package libjs-highlight.js. 111s Preparing to unpack .../073-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 111s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 111s Selecting previously unselected package libjs-jquery. 111s Preparing to unpack .../074-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 112s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 112s Selecting previously unselected package libjs-jquery-datatables. 112s Preparing to unpack .../075-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 112s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 112s Selecting previously unselected package libjs-sifter.js. 112s Preparing to unpack .../076-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 112s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 112s Selecting previously unselected package libjs-microplugin.js. 112s Preparing to unpack .../077-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 112s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 112s Selecting previously unselected package libjs-jquery-selectize.js. 112s Preparing to unpack .../078-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 112s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 112s Selecting previously unselected package libjs-jquery-ui. 112s Preparing to unpack .../079-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 112s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 112s Selecting previously unselected package libjs-json. 112s Preparing to unpack .../080-libjs-json_0~20221030+~1.0.8-1_all.deb ... 112s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 112s Selecting previously unselected package libjs-lunr. 112s Preparing to unpack .../081-libjs-lunr_2.3.9~dfsg-2_all.deb ... 112s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 112s Selecting previously unselected package libjs-prettify. 112s Preparing to unpack .../082-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 112s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 112s Selecting previously unselected package libkpathsea6:amd64. 112s Preparing to unpack .../083-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 112s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 112s Selecting previously unselected package liblapack3:amd64. 112s Preparing to unpack .../084-liblapack3_3.12.1-2_amd64.deb ... 112s Unpacking liblapack3:amd64 (3.12.1-2) ... 112s Selecting previously unselected package liblapack-dev:amd64. 112s Preparing to unpack .../085-liblapack-dev_3.12.1-2_amd64.deb ... 112s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 112s Selecting previously unselected package liblerc4:amd64. 112s Preparing to unpack .../086-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 112s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 112s Selecting previously unselected package liblua5.4-0:amd64. 112s Preparing to unpack .../087-liblua5.4-0_5.4.7-1_amd64.deb ... 112s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 112s Selecting previously unselected package libmpfi0:amd64. 112s Preparing to unpack .../088-libmpfi0_1.5.4+ds-4_amd64.deb ... 112s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 112s Selecting previously unselected package libncurses-dev:amd64. 112s Preparing to unpack .../089-libncurses-dev_6.5+20250216-2_amd64.deb ... 112s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 112s Selecting previously unselected package libthai-data. 112s Preparing to unpack .../090-libthai-data_0.1.29-2build1_all.deb ... 112s Unpacking libthai-data (0.1.29-2build1) ... 112s Selecting previously unselected package libthai0:amd64. 112s Preparing to unpack .../091-libthai0_0.1.29-2build1_amd64.deb ... 112s Unpacking libthai0:amd64 (0.1.29-2build1) ... 112s Selecting previously unselected package libpango-1.0-0:amd64. 112s Preparing to unpack .../092-libpango-1.0-0_1.56.3-1_amd64.deb ... 112s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ... 112s Selecting previously unselected package libpangoft2-1.0-0:amd64. 112s Preparing to unpack .../093-libpangoft2-1.0-0_1.56.3-1_amd64.deb ... 112s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ... 112s Selecting previously unselected package libpangocairo-1.0-0:amd64. 112s Preparing to unpack .../094-libpangocairo-1.0-0_1.56.3-1_amd64.deb ... 112s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ... 112s Selecting previously unselected package libpaper2:amd64. 112s Preparing to unpack .../095-libpaper2_2.2.5-0.3_amd64.deb ... 112s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 112s Selecting previously unselected package libpaper-utils. 112s Preparing to unpack .../096-libpaper-utils_2.2.5-0.3_amd64.deb ... 112s Unpacking libpaper-utils (2.2.5-0.3) ... 112s Selecting previously unselected package libpcre2-16-0:amd64. 112s Preparing to unpack .../097-libpcre2-16-0_10.45-1_amd64.deb ... 112s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 112s Selecting previously unselected package libpcre2-32-0:amd64. 113s Preparing to unpack .../098-libpcre2-32-0_10.45-1_amd64.deb ... 113s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 113s Selecting previously unselected package libpcre2-posix3:amd64. 113s Preparing to unpack .../099-libpcre2-posix3_10.45-1_amd64.deb ... 113s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 113s Selecting previously unselected package libpcre2-dev:amd64. 113s Preparing to unpack .../100-libpcre2-dev_10.45-1_amd64.deb ... 113s Unpacking libpcre2-dev:amd64 (10.45-1) ... 113s Selecting previously unselected package libpkgconf3:amd64. 113s Preparing to unpack .../101-libpkgconf3_1.8.1-4_amd64.deb ... 113s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 113s Selecting previously unselected package zlib1g-dev:amd64. 113s Preparing to unpack .../102-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 113s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 113s Selecting previously unselected package libpng-dev:amd64. 113s Preparing to unpack .../103-libpng-dev_1.6.47-1.1_amd64.deb ... 113s Unpacking libpng-dev:amd64 (1.6.47-1.1) ... 113s Selecting previously unselected package libpotrace0:amd64. 113s Preparing to unpack .../104-libpotrace0_1.16-2build1_amd64.deb ... 113s Unpacking libpotrace0:amd64 (1.16-2build1) ... 113s Selecting previously unselected package libptexenc1:amd64. 113s Preparing to unpack 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.../110-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 113s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 113s Selecting previously unselected package libteckit0:amd64. 113s Preparing to unpack .../111-libteckit0_2.5.12+ds1-1_amd64.deb ... 113s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 113s Selecting previously unselected package libtexlua53-5:amd64. 113s Preparing to unpack .../112-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 113s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 113s Selecting previously unselected package libjbig0:amd64. 113s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 113s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 113s Selecting previously unselected package libwebp7:amd64. 113s Preparing to unpack .../114-libwebp7_1.5.0-0.1_amd64.deb ... 113s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 113s Selecting previously unselected package libtiff6:amd64. 113s Preparing to unpack .../115-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 113s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 113s Selecting previously unselected package libxft2:amd64. 113s Preparing to unpack .../116-libxft2_2.3.6-1build1_amd64.deb ... 113s Unpacking libxft2:amd64 (2.3.6-1build1) ... 113s Selecting previously unselected package libxss1:amd64. 113s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build3_amd64.deb ... 113s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 113s Selecting previously unselected package libtk8.6:amd64. 113s Preparing to unpack .../118-libtk8.6_8.6.16-1_amd64.deb ... 113s Unpacking libtk8.6:amd64 (8.6.16-1) ... 113s Selecting previously unselected package libxt6t64:amd64. 113s Preparing to unpack .../119-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 113s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 113s Selecting previously unselected package libxmu6:amd64. 113s Preparing to unpack .../120-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 113s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 113s Selecting previously unselected package libxpm4:amd64. 113s Preparing to unpack .../121-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 113s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 113s Selecting previously unselected package libxaw7:amd64. 113s Preparing to unpack .../122-libxaw7_2%3a1.0.16-1_amd64.deb ... 113s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 113s Selecting previously unselected package libxi6:amd64. 113s Preparing to unpack .../123-libxi6_2%3a1.8.2-1_amd64.deb ... 113s Unpacking libxi6:amd64 (2:1.8.2-1) ... 113s Selecting previously unselected package libzstd-dev:amd64. 113s Preparing to unpack .../124-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 113s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 113s Selecting previously unselected package libzzip-0-13t64:amd64. 113s Preparing to unpack .../125-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 113s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 113s Selecting previously unselected package zip. 113s Preparing to unpack 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... 115s Selecting previously unselected package pkgconf-bin. 115s Preparing to unpack .../138-pkgconf-bin_1.8.1-4_amd64.deb ... 115s Unpacking pkgconf-bin (1.8.1-4) ... 115s Selecting previously unselected package pkgconf:amd64. 115s Preparing to unpack .../139-pkgconf_1.8.1-4_amd64.deb ... 115s Unpacking pkgconf:amd64 (1.8.1-4) ... 115s Selecting previously unselected package libtirpc-dev:amd64. 115s Preparing to unpack .../140-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 115s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 115s Selecting previously unselected package r-base-dev. 115s Preparing to unpack .../141-r-base-dev_4.5.0-3_all.deb ... 115s Unpacking r-base-dev (4.5.0-3) ... 115s Selecting previously unselected package pkg-r-autopkgtest. 115s Preparing to unpack .../142-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 115s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 115s Selecting previously unselected package r-bioc-biocgenerics. 115s Preparing to unpack .../143-r-bioc-biocgenerics_0.52.0-2_all.deb ... 115s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 115s Selecting previously unselected package r-cran-base64enc. 115s Preparing to unpack .../144-r-cran-base64enc_0.1-3-3_amd64.deb ... 115s Unpacking r-cran-base64enc (0.1-3-3) ... 115s Selecting previously unselected package r-cran-digest. 115s Preparing to unpack .../145-r-cran-digest_0.6.37-1_amd64.deb ... 115s Unpacking r-cran-digest (0.6.37-1) ... 115s Selecting previously unselected package r-cran-fastmap. 115s Preparing to unpack .../146-r-cran-fastmap_1.2.0-1_amd64.deb ... 115s Unpacking r-cran-fastmap (1.2.0-1) ... 115s Selecting previously unselected package r-cran-rlang. 115s Preparing to unpack .../147-r-cran-rlang_1.1.5-3_amd64.deb ... 115s Unpacking r-cran-rlang (1.1.5-3) ... 115s Selecting previously unselected package r-cran-htmltools. 115s Preparing to unpack .../148-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 115s Unpacking r-cran-htmltools (0.5.8.1-1) ... 115s Selecting previously unselected package r-cran-evaluate. 115s Preparing to unpack .../149-r-cran-evaluate_1.0.3-1_all.deb ... 115s Unpacking r-cran-evaluate (1.0.3-1) ... 115s Selecting previously unselected package r-cran-xfun. 115s Preparing to unpack .../150-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 115s Unpacking r-cran-xfun (0.51+dfsg-1) ... 115s Selecting previously unselected package r-cran-highr. 115s Preparing to unpack .../151-r-cran-highr_0.11+dfsg-1_all.deb ... 115s Unpacking r-cran-highr (0.11+dfsg-1) ... 115s Selecting previously unselected package r-cran-yaml. 115s Preparing to unpack .../152-r-cran-yaml_2.3.10-1_amd64.deb ... 115s Unpacking r-cran-yaml (2.3.10-1) ... 115s Selecting previously unselected package libjs-mathjax. 115s Preparing to unpack .../153-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 115s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 116s Selecting previously unselected package r-cran-knitr. 116s Preparing to unpack .../154-r-cran-knitr_1.50+dfsg-1_all.deb ... 116s Unpacking r-cran-knitr (1.50+dfsg-1) ... 116s Selecting previously unselected package r-cran-cachem. 116s Preparing to unpack .../155-r-cran-cachem_1.1.0-1_amd64.deb ... 116s Unpacking r-cran-cachem (1.1.0-1) ... 116s Selecting previously unselected package r-cran-jquerylib. 116s Preparing to unpack .../156-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 116s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 116s Selecting previously unselected package r-cran-jsonlite. 116s Preparing to unpack .../157-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 116s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 116s Selecting previously unselected package r-cran-cli. 116s Preparing to unpack .../158-r-cran-cli_3.6.4-1_amd64.deb ... 116s Unpacking r-cran-cli (3.6.4-1) ... 116s Selecting previously unselected package r-cran-glue. 116s Preparing to unpack .../159-r-cran-glue_1.8.0-1_amd64.deb ... 116s Unpacking r-cran-glue (1.8.0-1) ... 116s Selecting previously unselected package r-cran-lifecycle. 116s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 116s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 116s Selecting previously unselected package r-cran-memoise. 116s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 116s Unpacking r-cran-memoise (2.0.1-1) ... 116s Selecting previously unselected package r-cran-mime. 116s Preparing to unpack .../162-r-cran-mime_0.12-2_amd64.deb ... 116s Unpacking r-cran-mime (0.12-2) ... 116s Selecting previously unselected package r-cran-fs. 116s Preparing to unpack .../163-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 116s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 116s Selecting previously unselected package r-cran-r6. 116s Preparing to unpack .../164-r-cran-r6_2.6.1-1_all.deb ... 116s Unpacking r-cran-r6 (2.6.1-1) ... 116s Selecting previously unselected package r-cran-rappdirs. 116s Preparing to unpack .../165-r-cran-rappdirs_0.3.3-1_amd64.deb ... 116s Unpacking r-cran-rappdirs (0.3.3-1) ... 116s Selecting previously unselected package r-cran-sass. 116s Preparing to unpack .../166-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 116s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 117s Selecting previously unselected package r-cran-bslib. 117s Preparing to unpack .../167-r-cran-bslib_0.9.0+dfsg-1syncable1_all.deb ... 117s Unpacking r-cran-bslib (0.9.0+dfsg-1syncable1) ... 117s Selecting previously unselected package r-cran-fontawesome. 117s Preparing to unpack .../168-r-cran-fontawesome_0.5.3-1_all.deb ... 117s Unpacking r-cran-fontawesome (0.5.3-1) ... 117s Selecting previously unselected package r-cran-tinytex. 117s Preparing to unpack .../169-r-cran-tinytex_0.56-1_all.deb ... 117s Unpacking r-cran-tinytex (0.56-1) ... 117s Selecting previously unselected package libjs-modernizr. 117s Preparing to unpack .../170-libjs-modernizr_3.13.0-0.1_all.deb ... 117s Unpacking libjs-modernizr (3.13.0-0.1) ... 117s Selecting previously unselected package r-cran-pkgkitten. 117s Preparing to unpack .../171-r-cran-pkgkitten_0.2.4-1_all.deb ... 117s Unpacking r-cran-pkgkitten (0.2.4-1) ... 117s Selecting previously unselected package r-cran-rcpp. 117s Preparing to unpack .../172-r-cran-rcpp_1.0.14-1_amd64.deb ... 117s Unpacking r-cran-rcpp (1.0.14-1) ... 117s Selecting previously unselected package r-cran-later. 117s Preparing to unpack .../173-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 117s Unpacking r-cran-later (1.4.1+dfsg-1) ... 117s Selecting previously unselected package r-cran-magrittr. 117s Preparing to unpack .../174-r-cran-magrittr_2.0.3-1_amd64.deb ... 117s Unpacking r-cran-magrittr (2.0.3-1) ... 117s Selecting previously unselected package r-cran-promises. 117s Preparing to unpack .../175-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 117s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 117s Selecting previously unselected package r-cran-httpuv. 117s Preparing to unpack .../176-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 117s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 117s Selecting previously unselected package r-cran-xtable. 117s Preparing to unpack .../177-r-cran-xtable_1%3a1.8-4-2_all.deb ... 117s Unpacking r-cran-xtable (1:1.8-4-2) ... 117s Selecting previously unselected package r-cran-sourcetools. 117s Preparing to unpack .../178-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 117s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 117s Selecting previously unselected package r-cran-crayon. 117s Preparing to unpack .../179-r-cran-crayon_1.5.3-1_all.deb ... 117s Unpacking r-cran-crayon (1.5.3-1) ... 117s Selecting previously unselected package r-cran-withr. 117s Preparing to unpack .../180-r-cran-withr_3.0.2+dfsg-1_all.deb ... 117s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 117s Selecting previously unselected package r-cran-commonmark. 117s Preparing to unpack .../181-r-cran-commonmark_1.9.5-1_amd64.deb ... 117s Unpacking r-cran-commonmark (1.9.5-1) ... 117s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 117s Preparing to unpack .../182-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 117s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 117s Selecting previously unselected package r-cran-shiny. 117s Preparing to unpack .../183-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 117s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 117s Selecting previously unselected package r-cran-rmarkdown. 117s Preparing to unpack .../184-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 117s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 117s Selecting previously unselected package r-cran-bookdown. 117s Preparing to unpack .../185-r-cran-bookdown_0.42+dfsg-1_all.deb ... 117s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 118s Selecting previously unselected package r-cran-biocmanager. 118s Preparing to unpack .../186-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 118s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 118s Selecting previously unselected package tex-common. 118s Preparing to unpack .../187-tex-common_6.19_all.deb ... 118s Unpacking tex-common (6.19) ... 118s Selecting previously unselected package t1utils. 118s Preparing to unpack .../188-t1utils_1.41-4build3_amd64.deb ... 118s Unpacking t1utils (1.41-4build3) ... 118s Selecting previously unselected package texlive-binaries. 118s Preparing to unpack .../189-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 118s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 118s Selecting previously unselected package texlive-base. 118s Preparing to unpack .../190-texlive-base_2024.20250309-1_all.deb ... 118s Unpacking texlive-base (2024.20250309-1) ... 119s Selecting previously unselected package texlive-latex-base. 119s Preparing to unpack .../191-texlive-latex-base_2024.20250309-1_all.deb ... 119s Unpacking texlive-latex-base (2024.20250309-1) ... 119s Selecting previously unselected package texlive-bibtex-extra. 119s Preparing to unpack .../192-texlive-bibtex-extra_2024.20250309-2_all.deb ... 119s Unpacking texlive-bibtex-extra (2024.20250309-2) ... 121s Selecting previously unselected package r-bioc-biocversion. 121s Preparing to unpack .../193-r-bioc-biocversion_3.20.0-2_all.deb ... 121s Unpacking r-bioc-biocversion (3.20.0-2) ... 121s Selecting previously unselected package r-bioc-biocstyle. 121s Preparing to unpack .../194-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 121s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 121s Selecting previously unselected package r-bioc-s4vectors. 121s Preparing to unpack .../195-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 121s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 121s Selecting previously unselected package r-bioc-iranges. 121s Preparing to unpack .../196-r-bioc-iranges_2.40.1-3_amd64.deb ... 121s Unpacking r-bioc-iranges (2.40.1-3) ... 121s Selecting previously unselected package r-bioc-zlibbioc. 121s Preparing to unpack .../197-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 121s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 121s Selecting previously unselected package r-bioc-xvector. 121s Preparing to unpack .../198-r-bioc-xvector_0.46.0-2_amd64.deb ... 121s Unpacking r-bioc-xvector (0.46.0-2) ... 121s Selecting previously unselected package r-cran-curl. 121s Preparing to unpack .../199-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 121s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 121s Selecting previously unselected package r-cran-sys. 121s Preparing to unpack .../200-r-cran-sys_3.4.3-1_amd64.deb ... 121s Unpacking r-cran-sys (3.4.3-1) ... 121s Selecting previously unselected package r-cran-askpass. 121s Preparing to unpack .../201-r-cran-askpass_1.2.1-1_amd64.deb ... 121s Unpacking r-cran-askpass (1.2.1-1) ... 121s Selecting previously unselected package r-cran-openssl. 121s Preparing to unpack .../202-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 121s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 121s Selecting previously unselected package r-cran-httr. 121s Preparing to unpack .../203-r-cran-httr_1.4.7+dfsg-1_all.deb 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This may take some time... done. 130s Running mktexlsr /var/lib/texmf ... done. 130s Building format(s) --all. 159s This may take some time... done. 160s autopkgtest [22:15:40]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 160s autopkgtest [22:15:40]: test pkg-r-autopkgtest: [----------------------- 160s Test: Try to load the R library KEGGREST 161s 161s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 161s Copyright (C) 2025 The R Foundation for Statistical Computing 161s Platform: x86_64-pc-linux-gnu 161s 161s R is free software and comes with ABSOLUTELY NO WARRANTY. 161s You are welcome to redistribute it under certain conditions. 161s Type 'license()' or 'licence()' for distribution details. 161s 161s R is a collaborative project with many contributors. 161s Type 'contributors()' for more information and 161s 'citation()' on how to cite R or R packages in publications. 161s 161s Type 'demo()' for some demos, 'help()' for on-line help, or 161s 'help.start()' for an HTML browser interface to help. 161s Type 'q()' to quit R. 161s 161s > library('KEGGREST') 163s > 163s Other tests are currently unsupported! 163s They will be progressively added. 163s autopkgtest [22:15:43]: test pkg-r-autopkgtest: -----------------------] 164s autopkgtest [22:15:44]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 164s pkg-r-autopkgtest PASS 164s autopkgtest [22:15:44]: @@@@@@@@@@@@@@@@@@@@ summary 164s pkg-r-autopkgtest PASS 181s nova [W] Skipping flock for amd64 181s Creating nova instance adt-questing-amd64-r-bioc-keggrest-20250503-221300-juju-7f2275-prod-proposed-migration-environment-23-1d0590d5-8dd3-416a-a21d-a2bbb5505ccf from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 181s nova [W] Timed out waiting for ea80a82f-9973-4763-84fc-40fdc3e136b2 to get deleted.