0s autopkgtest [22:11:49]: starting date and time: 2025-05-03 22:11:49+0000 0s autopkgtest [22:11:49]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [22:11:49]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.13ad18k5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck,src:r-bioc-graph,src:r-bioc-iranges,src:r-bioc-pwalign,src:r-cran-rlang,src:r-cran-seurat,src:r-cran-sf --apt-upgrade r-bioc-grohmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2 r-bioc-graph/1.84.1-2 r-bioc-iranges/2.40.1-3 r-bioc-pwalign/1.2.0-3 r-cran-rlang/1.1.5-3 r-cran-seurat/5.2.1-5 r-cran-sf/1.0-19+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-17.secgroup --name adt-questing-amd64-r-bioc-grohmm-20250503-221149-juju-7f2275-prod-proposed-migration-environment-20-9f2760c9-70cc-40d5-861f-e19c48a9b3d4 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 51s autopkgtest [22:12:40]: testbed dpkg architecture: amd64 52s autopkgtest [22:12:41]: testbed apt version: 3.0.0 52s autopkgtest [22:12:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [22:12:41]: testbed release detected to be: None 53s autopkgtest [22:12:42]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 53s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 54s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 54s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.6 kB] 54s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1412 kB] 54s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [201 kB] 54s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [145 kB] 54s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [573 kB] 54s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1422 kB] 54s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [24.0 kB] 54s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [51.1 kB] 54s Fetched 4118 kB in 1s (3820 kB/s) 55s Reading package lists... 56s autopkgtest [22:12:45]: upgrading testbed (apt dist-upgrade and autopurge) 56s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 57s Starting 2 pkgProblemResolver with broken count: 0 57s Done 58s Entering ResolveByKeep 58s 58s Calculating upgrade... 59s The following packages will be upgraded: 59s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 59s libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient 59s sos 59s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 2693 kB of archives. 59s After this operation, 104 kB disk space will be freed. 59s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 59s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 59s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 59s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 59s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 59s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 59s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 59s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 59s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 59s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 59s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 60s Preconfiguring packages ... 60s Fetched 2693 kB in 1s (3985 kB/s) 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 60s Preparing to unpack .../debianutils_5.22_amd64.deb ... 60s Unpacking debianutils (5.22) over (5.21) ... 60s Setting up debianutils (5.22) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 60s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 60s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 60s Setting up libsepol2:amd64 (3.8.1-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 60s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 60s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 60s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 60s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 61s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 61s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 61s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 61s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 61s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 61s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 61s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 61s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 61s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 61s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 61s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 61s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 61s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 61s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 61s Setting up sos (4.9.1-1) ... 62s Setting up libnftnl11:amd64 (1.2.9-1) ... 62s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 63s Setting up python3-lazr.restfulclient (0.14.6-3) ... 63s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 63s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 63s Setting up libmbim-proxy (1.32.0-1) ... 63s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 63s Setting up libqmi-proxy (1.36.0-1) ... 63s Processing triggers for libc-bin (2.41-6ubuntu1) ... 64s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 64s Processing triggers for man-db (2.13.0-1) ... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [22:12:56]: rebooting testbed after setup commands that affected boot 90s autopkgtest [22:13:19]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 93s autopkgtest [22:13:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-grohmm 95s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (dsc) [2214 B] 95s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (tar) [4365 kB] 95s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-grohmm 1.40.3-2 (diff) [3640 B] 95s gpgv: Signature made Mon Jan 13 20:23:01 2025 UTC 95s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 95s gpgv: issuer "crusoe@debian.org" 95s gpgv: Can't check signature: No public key 95s dpkg-source: warning: cannot verify inline signature for ./r-bioc-grohmm_1.40.3-2.dsc: no acceptable signature found 95s autopkgtest [22:13:24]: testing package r-bioc-grohmm version 1.40.3-2 96s autopkgtest [22:13:25]: build not needed 99s autopkgtest [22:13:28]: test pkg-r-autopkgtest: preparing testbed 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Starting pkgProblemResolver with broken count: 0 99s Starting 2 pkgProblemResolver with broken count: 0 99s Done 100s The following NEW packages will be installed: 100s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 100s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 100s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 100s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 100s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 100s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 100s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 100s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 100s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 100s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 100s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 100s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 100s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 100s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 100s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 100s libjs-popper.js libjs-prettify libjs-sifter.js 100s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 100s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 100s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 100s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 100s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 100s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 100s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 100s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 100s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 100s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler node-bootstrap-sass 100s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 100s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi 100s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 100s r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings r-bioc-delayedarray 100s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 100s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 100s r-bioc-grohmm r-bioc-iranges r-bioc-keggrest r-bioc-limma 100s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 100s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 100s r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 100s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 100s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 100s r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark 100s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest 100s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 100s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 100s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 100s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 100s r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix 100s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 100s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-promises 100s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 100s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass 100s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-sys 100s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 100s r-cran-xtable r-cran-yaml t1utils tex-common texlive-base 100s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 100s xdg-utils zip zlib1g-dev 100s 0 upgraded, 259 newly installed, 0 to remove and 0 not upgraded. 100s Need to get 493 MB of archives. 100s After this operation, 1727 MB of additional disk space will be used. 100s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 101s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 101s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 101s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 101s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 101s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 101s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB] 101s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 101s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 101s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 101s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 101s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 101s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 101s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 101s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 101s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 101s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 102s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 102s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 102s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 102s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 102s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB] 102s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB] 102s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 102s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 102s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 102s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 102s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 102s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 102s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 102s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 102s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 102s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 102s Get:34 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 102s Get:35 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 103s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 103s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 103s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB] 103s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB] 103s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB] 103s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 103s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 103s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 103s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 javascript-common all 12 [5216 B] 103s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 103s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 103s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 103s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 103s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 103s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 libboost1.83-dev amd64 1.83.0-4.2ubuntu1 [10.7 MB] 104s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 104s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 104s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 104s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 104s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 104s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 104s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 104s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 104s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 104s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 104s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 104s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 104s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 104s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 104s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 104s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 104s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 104s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 104s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 104s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 104s Get:71 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 104s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 104s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-5 [531 kB] 104s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 104s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 104s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 104s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 104s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 104s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 104s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 104s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 104s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 104s Get:83 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 104s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 104s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 104s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 104s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 104s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 105s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 105s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 105s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 105s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 105s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 105s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 105s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 105s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 105s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 105s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 105s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 105s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 105s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 105s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 105s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 105s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 105s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 105s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB] 105s Get:107 http://ftpmaster.internal/ubuntu questing/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 105s Get:108 http://ftpmaster.internal/ubuntu questing/universe amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 105s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 105s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 105s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 105s Get:112 http://ftpmaster.internal/ubuntu questing/universe amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 105s Get:113 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 105s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 105s Get:115 http://ftpmaster.internal/ubuntu questing/universe amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 106s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 106s Get:117 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 106s Get:118 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 106s Get:119 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 106s Get:120 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 106s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 106s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 106s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 106s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 106s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 106s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 106s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 106s Get:128 http://ftpmaster.internal/ubuntu questing/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 106s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 106s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 106s Get:131 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 106s Get:132 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB] 107s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 107s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 littler all 0.3.20-2 [2554 B] 107s Get:135 http://ftpmaster.internal/ubuntu questing/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 107s Get:136 http://ftpmaster.internal/ubuntu questing/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 107s Get:137 http://ftpmaster.internal/ubuntu questing/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 107s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 107s Get:139 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 108s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB] 108s Get:141 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 108s Get:142 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 108s Get:143 http://ftpmaster.internal/ubuntu questing/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 108s Get:144 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B] 108s Get:145 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 108s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 108s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 108s Get:148 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 108s Get:149 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 108s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 108s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 108s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 108s Get:153 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 108s Get:154 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 108s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 108s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 108s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 108s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 108s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 108s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 108s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 108s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 108s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 108s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 108s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 108s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 108s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 108s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 108s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 108s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 108s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 108s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 108s Get:173 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 108s Get:174 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 108s Get:175 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 108s Get:176 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 108s Get:177 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 108s Get:178 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 109s Get:179 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 109s Get:180 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 109s Get:181 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 109s Get:182 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 109s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 109s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 109s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 109s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 109s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 109s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 109s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 109s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 109s Get:191 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 109s Get:192 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 110s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 110s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 110s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 110s Get:196 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 110s Get:197 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 110s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 110s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 110s Get:200 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 110s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-knitr all 1.50+dfsg-1 [840 kB] 110s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 110s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 110s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 110s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 110s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bslib all 0.9.0+dfsg-1syncable1 [4563 kB] 111s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 111s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 111s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 111s Get:210 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 111s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 111s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 111s Get:213 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 111s Get:214 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 111s Get:215 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 111s Get:216 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 111s Get:217 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 111s Get:218 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 111s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 111s Get:220 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 111s Get:221 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 111s Get:222 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 111s Get:223 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 111s Get:224 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 111s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 tex-common all 6.19 [29.8 kB] 111s Get:226 http://ftpmaster.internal/ubuntu questing/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 111s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 111s Get:228 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-base all 2024.20250309-1 [22.7 MB] 112s Get:229 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-latex-base all 2024.20250309-1 [1276 kB] 112s Get:230 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB] 115s Get:231 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 115s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 115s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 115s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 115s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 115s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 115s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 115s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 115s Get:239 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 115s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 115s Get:241 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-statmod amd64 1.5.0-1 [295 kB] 115s Get:242 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-limma amd64 3.62.2+dfsg-1 [1969 kB] 115s Get:243 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-locfit amd64 1.5-9.12-1 [552 kB] 115s Get:244 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-edger amd64 4.4.2+dfsg-1 [1120 kB] 115s Get:245 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 116s Get:246 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 116s Get:247 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 116s Get:248 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 116s Get:249 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 116s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 116s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 116s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 116s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 116s Get:254 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 116s Get:255 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 116s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 116s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 116s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-grohmm amd64 1.40.3-2 [4458 kB] 116s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-org.hs.eg.db all 3.20.0-3 [63.1 MB] 119s Preconfiguring packages ... 119s Fetched 493 MB in 19s (26.6 MB/s) 119s Selecting previously unselected package libisl23:amd64. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 120s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 120s Unpacking libisl23:amd64 (0.27-1) ... 120s Selecting previously unselected package libmpc3:amd64. 120s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 120s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 120s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 120s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 120s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 120s Selecting previously unselected package cpp-14. 120s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 120s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 120s Selecting previously unselected package cpp-x86-64-linux-gnu. 120s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 120s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 120s Selecting previously unselected package cpp. 120s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 120s Unpacking cpp (4:14.2.0-1ubuntu1) ... 120s Selecting previously unselected package libcc1-0:amd64. 120s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_amd64.deb ... 120s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ... 120s Selecting previously unselected package libgomp1:amd64. 120s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 120s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 120s Selecting previously unselected package libitm1:amd64. 120s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_amd64.deb ... 120s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ... 120s Selecting previously unselected package libasan8:amd64. 120s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_amd64.deb ... 120s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ... 120s Selecting previously unselected package liblsan0:amd64. 120s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_amd64.deb ... 120s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ... 121s Selecting previously unselected package libtsan2:amd64. 121s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_amd64.deb ... 121s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ... 121s Selecting previously unselected package libubsan1:amd64. 121s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_amd64.deb ... 121s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ... 121s Selecting previously unselected package libhwasan0:amd64. 121s Preparing to unpack .../013-libhwasan0_15-20250404-0ubuntu1_amd64.deb ... 121s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ... 121s Selecting previously unselected package libquadmath0:amd64. 121s Preparing to unpack .../014-libquadmath0_15-20250404-0ubuntu1_amd64.deb ... 121s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ... 121s Selecting previously unselected package libgcc-14-dev:amd64. 121s Preparing to unpack .../015-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ... 121s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 121s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 121s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 121s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 121s Selecting previously unselected package gcc-14. 121s Preparing to unpack .../017-gcc-14_14.2.0-19ubuntu2_amd64.deb ... 121s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 121s Selecting previously unselected package gcc-x86-64-linux-gnu. 121s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 121s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 121s Selecting previously unselected package gcc. 121s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 121s Unpacking gcc (4:14.2.0-1ubuntu1) ... 121s Selecting previously unselected package libstdc++-14-dev:amd64. 121s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ... 121s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 121s Selecting previously unselected package g++-14-x86-64-linux-gnu. 121s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 121s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 122s Selecting previously unselected package g++-14. 122s Preparing to unpack .../022-g++-14_14.2.0-19ubuntu2_amd64.deb ... 122s Unpacking g++-14 (14.2.0-19ubuntu2) ... 122s Selecting previously unselected package g++-x86-64-linux-gnu. 122s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 122s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 122s Selecting previously unselected package g++. 122s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 122s Unpacking g++ (4:14.2.0-1ubuntu1) ... 122s Selecting previously unselected package build-essential. 122s Preparing to unpack .../025-build-essential_12.12ubuntu1_amd64.deb ... 122s Unpacking build-essential (12.12ubuntu1) ... 122s Selecting previously unselected package dctrl-tools. 122s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 122s Unpacking dctrl-tools (2.24-3build3) ... 122s Selecting previously unselected package fonts-dejavu-mono. 122s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 122s Unpacking fonts-dejavu-mono (2.37-8) ... 122s Selecting previously unselected package fonts-dejavu-core. 122s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 122s Unpacking fonts-dejavu-core (2.37-8) ... 122s Selecting previously unselected package fontconfig-config. 122s Preparing to unpack .../029-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 122s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 122s Selecting previously unselected package libfontconfig1:amd64. 122s Preparing to unpack .../030-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 122s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 122s Selecting previously unselected package fontconfig. 122s Preparing to unpack .../031-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 122s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 122s Selecting previously unselected package fonts-font-awesome. 122s Preparing to unpack .../032-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 122s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 122s Selecting previously unselected package fonts-glyphicons-halflings. 122s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 122s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 122s Selecting previously unselected package fonts-lmodern. 122s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 122s Unpacking fonts-lmodern (2.005-1) ... 122s Selecting previously unselected package fonts-mathjax. 122s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 122s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 123s Selecting previously unselected package libgfortran5:amd64. 123s Preparing to unpack .../036-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 123s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 123s Selecting previously unselected package libgfortran-14-dev:amd64. 123s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ... 123s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 123s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 123s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 123s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 123s Selecting previously unselected package gfortran-14. 123s Preparing to unpack .../039-gfortran-14_14.2.0-19ubuntu2_amd64.deb ... 123s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 123s Selecting previously unselected package gfortran-x86-64-linux-gnu. 123s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 123s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 123s Selecting previously unselected package gfortran. 123s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 123s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 123s Selecting previously unselected package icu-devtools. 123s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 123s Unpacking icu-devtools (76.1-1ubuntu2) ... 123s Selecting previously unselected package javascript-common. 123s Preparing to unpack .../043-javascript-common_12_all.deb ... 123s Unpacking javascript-common (12) ... 123s Selecting previously unselected package libio-string-perl. 123s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 123s Unpacking libio-string-perl (1.08-4) ... 123s Selecting previously unselected package liblatex-tounicode-perl. 123s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 123s Unpacking liblatex-tounicode-perl (0.55-1) ... 123s Selecting previously unselected package libbibtex-parser-perl. 123s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 123s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 123s Selecting previously unselected package libblas3:amd64. 123s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 123s Unpacking libblas3:amd64 (3.12.1-2) ... 123s Selecting previously unselected package libblas-dev:amd64. 123s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 123s Unpacking libblas-dev:amd64 (3.12.1-2) ... 123s Selecting previously unselected package libboost1.83-dev:amd64. 123s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.2ubuntu1_amd64.deb ... 123s Unpacking libboost1.83-dev:amd64 (1.83.0-4.2ubuntu1) ... 125s Selecting previously unselected package libboost-dev:amd64. 125s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 125s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 125s Selecting previously unselected package libbz2-dev:amd64. 125s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 125s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 125s Selecting previously unselected package libpixman-1-0:amd64. 125s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 125s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 125s Selecting previously unselected package libxcb-render0:amd64. 125s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 125s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 125s Selecting previously unselected package libxcb-shm0:amd64. 125s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 125s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 125s Selecting previously unselected package libxrender1:amd64. 125s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 125s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 125s Selecting previously unselected package libcairo2:amd64. 125s Preparing to unpack .../056-libcairo2_1.18.4-1_amd64.deb ... 125s Unpacking libcairo2:amd64 (1.18.4-1) ... 125s Selecting previously unselected package libdatrie1:amd64. 125s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 125s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 125s Selecting previously unselected package libdeflate0:amd64. 125s Preparing to unpack .../058-libdeflate0_1.23-2_amd64.deb ... 125s Unpacking libdeflate0:amd64 (1.23-2) ... 125s Selecting previously unselected package libdeflate-dev:amd64. 125s Preparing to unpack .../059-libdeflate-dev_1.23-2_amd64.deb ... 125s Unpacking libdeflate-dev:amd64 (1.23-2) ... 125s Selecting previously unselected package libgraphite2-3:amd64. 125s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 125s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 125s Selecting previously unselected package libharfbuzz0b:amd64. 125s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 125s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 125s Selecting previously unselected package x11-common. 125s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu4_all.deb ... 125s Unpacking x11-common (1:7.7+23ubuntu4) ... 125s Selecting previously unselected package libice6:amd64. 125s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 125s Unpacking libice6:amd64 (2:1.1.1-1) ... 125s Selecting previously unselected package libicu-dev:amd64. 125s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ... 125s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 126s Selecting previously unselected package libjpeg-turbo8:amd64. 126s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 126s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 126s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 126s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 126s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 126s Selecting previously unselected package libjpeg8:amd64. 126s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 126s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 126s Selecting previously unselected package libjpeg8-dev:amd64. 126s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 126s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 126s Selecting previously unselected package libjpeg-dev:amd64. 126s Preparing to unpack .../069-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 126s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 126s Selecting previously unselected package libjs-bootstrap. 126s Preparing to unpack .../070-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 126s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 126s Selecting previously unselected package libjs-popper.js. 126s Preparing to unpack .../071-libjs-popper.js_1.16.1+ds-6_all.deb ... 126s Unpacking libjs-popper.js (1.16.1+ds-6) ... 126s Selecting previously unselected package libjs-bootstrap4. 126s Preparing to unpack .../072-libjs-bootstrap4_4.6.1+dfsg1-5_all.deb ... 126s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-5) ... 126s Selecting previously unselected package libjs-d3. 126s Preparing to unpack .../073-libjs-d3_3.5.17-4_all.deb ... 126s Unpacking libjs-d3 (3.5.17-4) ... 126s Selecting previously unselected package libjs-es5-shim. 126s Preparing to unpack .../074-libjs-es5-shim_4.6.7-2_all.deb ... 126s Unpacking libjs-es5-shim (4.6.7-2) ... 126s Selecting previously unselected package libjs-highlight.js. 126s Preparing to unpack .../075-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 126s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 126s Selecting previously unselected package libjs-jquery. 126s Preparing to unpack .../076-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 126s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 126s Selecting previously unselected package libjs-jquery-datatables. 126s Preparing to unpack .../077-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 126s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 126s Selecting previously unselected package libjs-sifter.js. 126s Preparing to unpack .../078-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 126s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 126s Selecting previously unselected package libjs-microplugin.js. 126s Preparing to unpack .../079-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 126s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 126s Selecting previously unselected package libjs-jquery-selectize.js. 126s Preparing to unpack .../080-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 126s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 126s Selecting previously unselected package libjs-jquery-ui. 126s Preparing to unpack .../081-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 126s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 127s Selecting previously unselected package libjs-json. 127s Preparing to unpack .../082-libjs-json_0~20221030+~1.0.8-1_all.deb ... 127s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 127s Selecting previously unselected package libjs-lunr. 127s Preparing to unpack .../083-libjs-lunr_2.3.9~dfsg-2_all.deb ... 127s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 127s Selecting previously unselected package libjs-prettify. 127s Preparing to unpack .../084-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 127s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 127s Selecting previously unselected package libkpathsea6:amd64. 127s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 127s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 127s Selecting previously unselected package liblapack3:amd64. 127s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 127s Unpacking liblapack3:amd64 (3.12.1-2) ... 127s Selecting previously unselected package liblapack-dev:amd64. 127s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 127s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 127s Selecting previously unselected package liblerc4:amd64. 127s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 127s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 127s Selecting previously unselected package liblua5.4-0:amd64. 127s Preparing to unpack .../089-liblua5.4-0_5.4.7-1_amd64.deb ... 127s Unpacking liblua5.4-0:amd64 (5.4.7-1) ... 127s Selecting previously unselected package libmpfi0:amd64. 127s Preparing to unpack .../090-libmpfi0_1.5.4+ds-4_amd64.deb ... 127s Unpacking libmpfi0:amd64 (1.5.4+ds-4) ... 127s Selecting previously unselected package libncurses-dev:amd64. 127s Preparing to unpack .../091-libncurses-dev_6.5+20250216-2_amd64.deb ... 127s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 127s Selecting previously unselected package libthai-data. 127s Preparing to unpack .../092-libthai-data_0.1.29-2build1_all.deb ... 127s Unpacking libthai-data (0.1.29-2build1) ... 127s Selecting previously unselected package libthai0:amd64. 127s Preparing to unpack .../093-libthai0_0.1.29-2build1_amd64.deb ... 127s Unpacking libthai0:amd64 (0.1.29-2build1) ... 127s Selecting previously unselected package libpango-1.0-0:amd64. 127s Preparing to unpack .../094-libpango-1.0-0_1.56.3-1_amd64.deb ... 127s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ... 127s Selecting previously unselected package libpangoft2-1.0-0:amd64. 127s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.3-1_amd64.deb ... 127s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ... 127s Selecting previously unselected package libpangocairo-1.0-0:amd64. 127s Preparing to unpack .../096-libpangocairo-1.0-0_1.56.3-1_amd64.deb ... 127s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ... 127s Selecting previously unselected package libpaper2:amd64. 127s Preparing to unpack .../097-libpaper2_2.2.5-0.3_amd64.deb ... 127s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 127s Selecting previously unselected package libpaper-utils. 127s Preparing to unpack .../098-libpaper-utils_2.2.5-0.3_amd64.deb ... 127s Unpacking libpaper-utils (2.2.5-0.3) ... 127s Selecting previously unselected package libpcre2-16-0:amd64. 127s Preparing to unpack .../099-libpcre2-16-0_10.45-1_amd64.deb ... 127s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 127s Selecting previously unselected package libpcre2-32-0:amd64. 127s Preparing to unpack .../100-libpcre2-32-0_10.45-1_amd64.deb ... 127s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 127s Selecting previously unselected package libpcre2-posix3:amd64. 127s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 127s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 127s Selecting previously unselected package libpcre2-dev:amd64. 127s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 127s Unpacking libpcre2-dev:amd64 (10.45-1) ... 127s Selecting previously unselected package libpkgconf3:amd64. 127s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 127s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 127s Selecting previously unselected package zlib1g-dev:amd64. 127s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 127s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 128s Selecting previously unselected package libpng-dev:amd64. 128s Preparing to unpack .../105-libpng-dev_1.6.47-1.1_amd64.deb ... 128s Unpacking libpng-dev:amd64 (1.6.47-1.1) ... 128s Selecting previously unselected package libpotrace0:amd64. 128s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 128s Unpacking libpotrace0:amd64 (1.16-2build1) ... 128s Selecting previously unselected package libptexenc1:amd64. 128s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 128s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 128s Selecting previously unselected package libreadline-dev:amd64. 128s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 128s Unpacking libreadline-dev:amd64 (8.2-6) ... 128s Selecting previously unselected package libsharpyuv0:amd64. 128s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 128s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 128s Selecting previously unselected package libsm6:amd64. 128s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 128s Unpacking libsm6:amd64 (2:1.2.4-1) ... 128s Selecting previously unselected package libsynctex2:amd64. 128s Preparing to unpack .../111-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 128s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 128s Selecting previously unselected package libtcl8.6:amd64. 128s Preparing to unpack .../112-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 128s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 128s Selecting previously unselected package libteckit0:amd64. 128s Preparing to unpack .../113-libteckit0_2.5.12+ds1-1_amd64.deb ... 128s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 128s Selecting previously unselected package libtexlua53-5:amd64. 128s Preparing to unpack .../114-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 128s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 128s Selecting previously unselected package libjbig0:amd64. 128s Preparing to unpack .../115-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 128s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 128s Selecting previously unselected package libwebp7:amd64. 128s Preparing to unpack .../116-libwebp7_1.5.0-0.1_amd64.deb ... 128s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 128s Selecting previously unselected package libtiff6:amd64. 128s Preparing to unpack .../117-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 128s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 128s Selecting previously unselected package libxft2:amd64. 128s Preparing to unpack .../118-libxft2_2.3.6-1build1_amd64.deb ... 128s Unpacking libxft2:amd64 (2.3.6-1build1) ... 128s Selecting previously unselected package libxss1:amd64. 128s Preparing to unpack .../119-libxss1_1%3a1.2.3-1build3_amd64.deb ... 128s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 128s Selecting previously unselected package libtk8.6:amd64. 128s Preparing to unpack .../120-libtk8.6_8.6.16-1_amd64.deb ... 128s Unpacking libtk8.6:amd64 (8.6.16-1) ... 128s Selecting previously unselected package libxt6t64:amd64. 128s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 128s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 128s Selecting previously unselected package libxmu6:amd64. 128s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 128s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 128s Selecting previously unselected package libxpm4:amd64. 128s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 128s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 128s Selecting previously unselected package libxaw7:amd64. 128s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 128s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 128s Selecting previously unselected package libxi6:amd64. 128s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 128s Unpacking libxi6:amd64 (2:1.8.2-1) ... 128s Selecting previously unselected package libzstd-dev:amd64. 128s Preparing to unpack .../126-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 128s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 128s Selecting previously unselected package libzzip-0-13t64:amd64. 128s Preparing to unpack .../127-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 128s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 128s Selecting previously unselected package zip. 128s Preparing to unpack .../128-zip_3.0-14ubuntu2_amd64.deb ... 128s Unpacking zip (3.0-14ubuntu2) ... 128s Selecting previously unselected package unzip. 128s Preparing to unpack .../129-unzip_6.0-28ubuntu6_amd64.deb ... 128s Unpacking unzip (6.0-28ubuntu6) ... 128s Selecting previously unselected package xdg-utils. 128s Preparing to unpack .../130-xdg-utils_1.2.1-2ubuntu1_all.deb ... 128s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 128s Selecting previously unselected package r-base-core. 128s Preparing to unpack .../131-r-base-core_4.5.0-3_amd64.deb ... 128s Unpacking r-base-core (4.5.0-3) ... 129s Selecting previously unselected package r-cran-littler. 129s Preparing to unpack .../132-r-cran-littler_0.3.20-2_amd64.deb ... 129s Unpacking r-cran-littler (0.3.20-2) ... 129s Selecting previously unselected package littler. 129s Preparing to unpack .../133-littler_0.3.20-2_all.deb ... 129s Unpacking littler (0.3.20-2) ... 129s Selecting previously unselected package node-bootstrap-sass. 129s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 129s Unpacking node-bootstrap-sass (3.4.3-2) ... 129s Selecting previously unselected package node-html5shiv. 129s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 129s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 129s Selecting previously unselected package node-normalize.css. 129s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 129s Unpacking node-normalize.css (8.0.1-5) ... 129s Selecting previously unselected package pandoc-data. 129s Preparing to unpack .../137-pandoc-data_3.1.11.1-3build1_all.deb ... 129s Unpacking pandoc-data (3.1.11.1-3build1) ... 129s Selecting previously unselected package pandoc. 129s Preparing to unpack .../138-pandoc_3.1.11.1+ds-2_amd64.deb ... 129s Unpacking pandoc (3.1.11.1+ds-2) ... 130s Selecting previously unselected package liblzma-dev:amd64. 130s Preparing to unpack .../139-liblzma-dev_5.6.4-1ubuntu1_amd64.deb ... 130s Unpacking liblzma-dev:amd64 (5.6.4-1ubuntu1) ... 130s Selecting previously unselected package pkgconf-bin. 130s Preparing to unpack .../140-pkgconf-bin_1.8.1-4_amd64.deb ... 130s Unpacking pkgconf-bin (1.8.1-4) ... 130s Selecting previously unselected package pkgconf:amd64. 130s Preparing to unpack .../141-pkgconf_1.8.1-4_amd64.deb ... 130s Unpacking pkgconf:amd64 (1.8.1-4) ... 130s Selecting previously unselected package libtirpc-dev:amd64. 130s Preparing to unpack .../142-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 130s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 130s Selecting previously unselected package r-base-dev. 130s Preparing to unpack .../143-r-base-dev_4.5.0-3_all.deb ... 130s Unpacking r-base-dev (4.5.0-3) ... 130s Selecting previously unselected package pkg-r-autopkgtest. 130s Preparing to unpack .../144-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 130s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 130s Selecting previously unselected package r-bioc-biocgenerics. 130s Preparing to unpack .../145-r-bioc-biocgenerics_0.52.0-2_all.deb ... 130s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 130s Selecting previously unselected package r-bioc-biobase. 130s Preparing to unpack .../146-r-bioc-biobase_2.66.0-2_amd64.deb ... 130s Unpacking r-bioc-biobase (2.66.0-2) ... 130s Selecting previously unselected package r-bioc-s4vectors. 130s Preparing to unpack .../147-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 130s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 130s Selecting previously unselected package r-bioc-iranges. 130s Preparing to unpack .../148-r-bioc-iranges_2.40.1-3_amd64.deb ... 130s Unpacking r-bioc-iranges (2.40.1-3) ... 130s Selecting previously unselected package r-cran-dbi. 130s Preparing to unpack .../149-r-cran-dbi_1.2.3-1_all.deb ... 130s Unpacking r-cran-dbi (1.2.3-1) ... 130s Selecting previously unselected package r-cran-bit. 130s Preparing to unpack .../150-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 130s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 131s Selecting previously unselected package r-cran-bit64. 131s Preparing to unpack .../151-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 131s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 131s Selecting previously unselected package r-cran-rlang. 131s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_amd64.deb ... 131s Unpacking r-cran-rlang (1.1.5-3) ... 131s Selecting previously unselected package r-cran-cli. 131s Preparing to unpack .../153-r-cran-cli_3.6.4-1_amd64.deb ... 131s Unpacking r-cran-cli (3.6.4-1) ... 131s Selecting previously unselected package r-cran-glue. 131s Preparing to unpack .../154-r-cran-glue_1.8.0-1_amd64.deb ... 131s Unpacking r-cran-glue (1.8.0-1) ... 131s Selecting previously unselected package r-cran-lifecycle. 131s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 131s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 131s Selecting previously unselected package r-cran-vctrs. 131s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_amd64.deb ... 131s Unpacking r-cran-vctrs (0.6.5-1) ... 131s Selecting previously unselected package r-cran-blob. 131s Preparing to unpack .../157-r-cran-blob_1.2.4-1_all.deb ... 131s Unpacking r-cran-blob (1.2.4-1) ... 131s Selecting previously unselected package r-cran-fastmap. 131s Preparing to unpack .../158-r-cran-fastmap_1.2.0-1_amd64.deb ... 131s Unpacking r-cran-fastmap (1.2.0-1) ... 131s Selecting previously unselected package r-cran-cachem. 131s Preparing to unpack .../159-r-cran-cachem_1.1.0-1_amd64.deb ... 131s Unpacking r-cran-cachem (1.1.0-1) ... 131s Selecting previously unselected package r-cran-memoise. 131s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 131s Unpacking r-cran-memoise (2.0.1-1) ... 131s Selecting previously unselected package r-cran-pkgconfig. 131s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 131s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 131s Selecting previously unselected package r-cran-plogr. 131s Preparing to unpack .../162-r-cran-plogr_0.2.0-3build1_all.deb ... 131s Unpacking r-cran-plogr (0.2.0-3build1) ... 131s Selecting previously unselected package r-cran-cpp11. 131s Preparing to unpack .../163-r-cran-cpp11_0.5.2-1_all.deb ... 131s Unpacking r-cran-cpp11 (0.5.2-1) ... 131s Selecting previously unselected package r-cran-rsqlite. 131s Preparing to unpack .../164-r-cran-rsqlite_2.3.9-1_amd64.deb ... 131s Unpacking r-cran-rsqlite (2.3.9-1) ... 131s Selecting previously unselected package r-cran-curl. 131s Preparing to unpack .../165-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 131s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 131s Selecting previously unselected package r-cran-jsonlite. 131s Preparing to unpack .../166-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 131s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 131s Selecting previously unselected package r-cran-mime. 131s Preparing to unpack .../167-r-cran-mime_0.12-2_amd64.deb ... 131s Unpacking r-cran-mime (0.12-2) ... 131s Selecting previously unselected package r-cran-sys. 131s Preparing to unpack .../168-r-cran-sys_3.4.3-1_amd64.deb ... 131s Unpacking r-cran-sys (3.4.3-1) ... 131s Selecting previously unselected package r-cran-askpass. 131s Preparing to unpack .../169-r-cran-askpass_1.2.1-1_amd64.deb ... 131s Unpacking r-cran-askpass (1.2.1-1) ... 131s Selecting previously unselected package r-cran-openssl. 131s Preparing to unpack .../170-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 131s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 131s Selecting previously unselected package r-cran-r6. 131s Preparing to unpack .../171-r-cran-r6_2.6.1-1_all.deb ... 131s Unpacking r-cran-r6 (2.6.1-1) ... 131s Selecting previously unselected package r-cran-httr. 131s Preparing to unpack .../172-r-cran-httr_1.4.7+dfsg-1_all.deb ... 131s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 132s Selecting previously unselected package r-cran-png. 132s Preparing to unpack .../173-r-cran-png_0.1-8-1build2_amd64.deb ... 132s Unpacking r-cran-png (0.1-8-1build2) ... 132s Selecting previously unselected package r-bioc-zlibbioc. 132s Preparing to unpack .../174-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 132s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 132s Selecting previously unselected package r-bioc-xvector. 132s Preparing to unpack .../175-r-bioc-xvector_0.46.0-2_amd64.deb ... 132s Unpacking r-bioc-xvector (0.46.0-2) ... 132s Selecting previously unselected package r-bioc-ucsc.utils. 132s Preparing to unpack .../176-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 132s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 132s Selecting previously unselected package r-bioc-genomeinfodbdata. 132s Preparing to unpack .../177-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 132s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 132s Selecting previously unselected package r-bioc-genomeinfodb. 132s Preparing to unpack .../178-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 132s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 132s Selecting previously unselected package r-cran-crayon. 132s Preparing to unpack .../179-r-cran-crayon_1.5.3-1_all.deb ... 132s Unpacking r-cran-crayon (1.5.3-1) ... 132s Selecting previously unselected package r-bioc-biostrings. 132s Preparing to unpack .../180-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 132s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 132s Selecting previously unselected package r-bioc-keggrest. 132s Preparing to unpack .../181-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 132s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 132s Selecting previously unselected package r-bioc-annotationdbi. 132s Preparing to unpack .../182-r-bioc-annotationdbi_1.68.0-2_all.deb ... 132s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 132s Selecting previously unselected package r-bioc-biocio. 132s Preparing to unpack .../183-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 132s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 132s Selecting previously unselected package r-cran-formatr. 132s Preparing to unpack .../184-r-cran-formatr_1.14-2_all.deb ... 132s Unpacking r-cran-formatr (1.14-2) ... 132s Selecting previously unselected package r-cran-lambda.r. 132s Preparing to unpack .../185-r-cran-lambda.r_1.2.4-2build1_all.deb ... 132s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 132s Selecting previously unselected package r-cran-futile.options. 132s Preparing to unpack .../186-r-cran-futile.options_1.0.1-3build1_all.deb ... 132s Unpacking r-cran-futile.options (1.0.1-3build1) ... 132s Selecting previously unselected package r-cran-futile.logger. 132s Preparing to unpack .../187-r-cran-futile.logger_1.4.3-4build1_all.deb ... 132s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 132s Selecting previously unselected package r-cran-snow. 132s Preparing to unpack .../188-r-cran-snow_1%3a0.4.4-2_all.deb ... 132s Unpacking r-cran-snow (1:0.4.4-2) ... 132s Selecting previously unselected package r-cran-codetools. 132s Preparing to unpack .../189-r-cran-codetools_0.2-20-1_all.deb ... 132s Unpacking r-cran-codetools (0.2-20-1) ... 132s Selecting previously unselected package r-cran-bh. 132s Preparing to unpack .../190-r-cran-bh_1.84.0-1_all.deb ... 132s Unpacking r-cran-bh (1.84.0-1) ... 132s Selecting previously unselected package r-bioc-biocparallel. 132s Preparing to unpack .../191-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 132s Unpacking r-bioc-biocparallel (1.40.0-2) ... 132s Selecting previously unselected package r-cran-base64enc. 132s Preparing to unpack .../192-r-cran-base64enc_0.1-3-3_amd64.deb ... 132s Unpacking r-cran-base64enc (0.1-3-3) ... 132s Selecting previously unselected package r-cran-digest. 132s Preparing to unpack .../193-r-cran-digest_0.6.37-1_amd64.deb ... 132s Unpacking r-cran-digest (0.6.37-1) ... 132s Selecting previously unselected package r-cran-htmltools. 132s Preparing to unpack .../194-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 132s Unpacking r-cran-htmltools (0.5.8.1-1) ... 132s Selecting previously unselected package r-cran-evaluate. 132s Preparing to unpack .../195-r-cran-evaluate_1.0.3-1_all.deb ... 132s Unpacking r-cran-evaluate (1.0.3-1) ... 132s Selecting previously unselected package r-cran-xfun. 133s Preparing to unpack .../196-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 133s Unpacking r-cran-xfun (0.51+dfsg-1) ... 133s Selecting previously unselected package r-cran-highr. 133s Preparing to unpack .../197-r-cran-highr_0.11+dfsg-1_all.deb ... 133s Unpacking r-cran-highr (0.11+dfsg-1) ... 133s Selecting previously unselected package r-cran-yaml. 133s Preparing to unpack .../198-r-cran-yaml_2.3.10-1_amd64.deb ... 133s Unpacking r-cran-yaml (2.3.10-1) ... 133s Selecting previously unselected package libjs-mathjax. 133s Preparing to unpack .../199-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 133s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 133s Selecting previously unselected package r-cran-knitr. 133s Preparing to unpack .../200-r-cran-knitr_1.50+dfsg-1_all.deb ... 133s Unpacking r-cran-knitr (1.50+dfsg-1) ... 133s Selecting previously unselected package r-cran-jquerylib. 133s Preparing to unpack .../201-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 133s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 133s Selecting previously unselected package r-cran-fs. 133s Preparing to unpack .../202-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 133s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 133s Selecting previously unselected package r-cran-rappdirs. 133s Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_amd64.deb ... 133s Unpacking r-cran-rappdirs (0.3.3-1) ... 133s Selecting previously unselected package r-cran-sass. 133s Preparing to unpack .../204-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 133s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 133s Selecting previously unselected package r-cran-bslib. 133s Preparing to unpack .../205-r-cran-bslib_0.9.0+dfsg-1syncable1_all.deb ... 133s Unpacking r-cran-bslib (0.9.0+dfsg-1syncable1) ... 134s Selecting previously unselected package r-cran-fontawesome. 134s Preparing to unpack .../206-r-cran-fontawesome_0.5.3-1_all.deb ... 134s Unpacking r-cran-fontawesome (0.5.3-1) ... 134s Selecting previously unselected package r-cran-tinytex. 134s Preparing to unpack .../207-r-cran-tinytex_0.56-1_all.deb ... 134s Unpacking r-cran-tinytex (0.56-1) ... 134s Selecting previously unselected package libjs-modernizr. 134s Preparing to unpack .../208-libjs-modernizr_3.13.0-0.1_all.deb ... 134s Unpacking libjs-modernizr (3.13.0-0.1) ... 134s Selecting previously unselected package r-cran-pkgkitten. 134s Preparing to unpack .../209-r-cran-pkgkitten_0.2.4-1_all.deb ... 134s Unpacking r-cran-pkgkitten (0.2.4-1) ... 134s Selecting previously unselected package r-cran-rcpp. 134s Preparing to unpack .../210-r-cran-rcpp_1.0.14-1_amd64.deb ... 134s Unpacking r-cran-rcpp (1.0.14-1) ... 134s Selecting previously unselected package r-cran-later. 134s Preparing to unpack .../211-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 134s Unpacking r-cran-later (1.4.1+dfsg-1) ... 134s Selecting previously unselected package r-cran-magrittr. 134s Preparing to unpack .../212-r-cran-magrittr_2.0.3-1_amd64.deb ... 134s Unpacking r-cran-magrittr (2.0.3-1) ... 134s Selecting previously unselected package r-cran-promises. 134s Preparing to unpack .../213-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 134s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 134s Selecting previously unselected package r-cran-httpuv. 134s Preparing to unpack .../214-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 134s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 134s Selecting previously unselected package r-cran-xtable. 134s Preparing to unpack .../215-r-cran-xtable_1%3a1.8-4-2_all.deb ... 134s Unpacking r-cran-xtable (1:1.8-4-2) ... 134s Selecting previously unselected package r-cran-sourcetools. 134s Preparing to unpack .../216-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 134s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 134s Selecting previously unselected package r-cran-withr. 134s Preparing to unpack .../217-r-cran-withr_3.0.2+dfsg-1_all.deb ... 134s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 134s Selecting previously unselected package r-cran-commonmark. 134s Preparing to unpack .../218-r-cran-commonmark_1.9.5-1_amd64.deb ... 134s Unpacking r-cran-commonmark (1.9.5-1) ... 134s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 134s Preparing to unpack .../219-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 134s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 134s Selecting previously unselected package r-cran-shiny. 134s Preparing to unpack .../220-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 134s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 134s Selecting previously unselected package r-cran-rmarkdown. 134s Preparing to unpack .../221-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 134s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 135s Selecting previously unselected package r-cran-bookdown. 135s Preparing to unpack .../222-r-cran-bookdown_0.42+dfsg-1_all.deb ... 135s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 135s Selecting previously unselected package r-cran-biocmanager. 135s Preparing to unpack .../223-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 135s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 135s Selecting previously unselected package tex-common. 135s Preparing to unpack .../224-tex-common_6.19_all.deb ... 135s Unpacking tex-common (6.19) ... 135s Selecting previously unselected package t1utils. 135s Preparing to unpack .../225-t1utils_1.41-4build3_amd64.deb ... 135s Unpacking t1utils (1.41-4build3) ... 135s Selecting previously unselected package texlive-binaries. 135s Preparing to unpack .../226-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 135s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 135s Selecting previously unselected package texlive-base. 135s Preparing to unpack .../227-texlive-base_2024.20250309-1_all.deb ... 135s Unpacking texlive-base (2024.20250309-1) ... 136s Selecting previously unselected package texlive-latex-base. 136s Preparing to unpack .../228-texlive-latex-base_2024.20250309-1_all.deb ... 136s Unpacking texlive-latex-base (2024.20250309-1) ... 136s Selecting previously unselected package texlive-bibtex-extra. 136s Preparing to unpack .../229-texlive-bibtex-extra_2024.20250309-2_all.deb ... 136s Unpacking texlive-bibtex-extra (2024.20250309-2) ... 138s Selecting previously unselected package r-bioc-biocversion. 138s Preparing to unpack .../230-r-bioc-biocversion_3.20.0-2_all.deb ... 138s Unpacking r-bioc-biocversion (3.20.0-2) ... 138s Selecting previously unselected package r-bioc-biocstyle. 138s Preparing to unpack .../231-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 138s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 138s Selecting previously unselected package r-cran-lattice. 138s Preparing to unpack .../232-r-cran-lattice_0.22-6-1_amd64.deb ... 138s Unpacking r-cran-lattice (0.22-6-1) ... 138s Selecting previously unselected package r-cran-matrix. 138s Preparing to unpack .../233-r-cran-matrix_1.7-3-1_amd64.deb ... 138s Unpacking r-cran-matrix (1.7-3-1) ... 138s Selecting previously unselected package r-cran-matrixstats. 138s Preparing to unpack .../234-r-cran-matrixstats_1.5.0-1_amd64.deb ... 138s Unpacking r-cran-matrixstats (1.5.0-1) ... 138s Selecting previously unselected package r-bioc-matrixgenerics. 138s Preparing to unpack .../235-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 138s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 138s Selecting previously unselected package r-cran-abind. 138s Preparing to unpack .../236-r-cran-abind_1.4-8-1_all.deb ... 138s Unpacking r-cran-abind (1.4-8-1) ... 138s Selecting previously unselected package r-bioc-s4arrays. 138s Preparing to unpack .../237-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 138s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 138s Selecting previously unselected package r-bioc-sparsearray. 138s Preparing to unpack .../238-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 138s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 138s Selecting previously unselected package r-bioc-delayedarray. 138s Preparing to unpack .../239-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 138s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 138s Selecting previously unselected package r-cran-statmod. 138s Preparing to unpack .../240-r-cran-statmod_1.5.0-1_amd64.deb ... 138s Unpacking r-cran-statmod (1.5.0-1) ... 138s Selecting previously unselected package r-bioc-limma. 138s Preparing to unpack .../241-r-bioc-limma_3.62.2+dfsg-1_amd64.deb ... 138s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 138s Selecting previously unselected package r-cran-locfit. 138s Preparing to unpack .../242-r-cran-locfit_1.5-9.12-1_amd64.deb ... 138s Unpacking r-cran-locfit (1.5-9.12-1) ... 138s Selecting previously unselected package r-bioc-edger. 139s Preparing to unpack .../243-r-bioc-edger_4.4.2+dfsg-1_amd64.deb ... 139s Unpacking r-bioc-edger (4.4.2+dfsg-1) ... 139s Selecting previously unselected package r-bioc-genomicranges. 139s Preparing to unpack .../244-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 139s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 139s Selecting previously unselected package r-bioc-summarizedexperiment. 139s Preparing to unpack .../245-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 139s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 139s Selecting previously unselected package r-cran-bitops. 139s Preparing to unpack .../246-r-cran-bitops_1.0-9-1_amd64.deb ... 139s Unpacking r-cran-bitops (1.0-9-1) ... 139s Selecting previously unselected package r-bioc-rhtslib. 139s Preparing to unpack .../247-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 139s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 139s Selecting previously unselected package r-bioc-rsamtools. 139s Preparing to unpack .../248-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 139s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 139s Selecting previously unselected package r-bioc-genomicalignments. 139s Preparing to unpack .../249-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 139s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 139s Selecting previously unselected package r-cran-xml. 139s Preparing to unpack .../250-r-cran-xml_3.99-0.18-1_amd64.deb ... 139s Unpacking r-cran-xml (3.99-0.18-1) ... 139s Selecting previously unselected package r-cran-rcurl. 139s Preparing to unpack .../251-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 139s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 139s Selecting previously unselected package r-cran-rjson. 139s Preparing to unpack .../252-r-cran-rjson_0.2.23-1_amd64.deb ... 139s Unpacking r-cran-rjson (0.2.23-1) ... 139s Selecting previously unselected package r-cran-restfulr. 139s Preparing to unpack .../253-r-cran-restfulr_0.0.15-1_amd64.deb ... 139s Unpacking r-cran-restfulr (0.0.15-1) ... 139s Selecting previously unselected package r-bioc-rtracklayer. 139s Preparing to unpack .../254-r-bioc-rtracklayer_1.66.0-2_amd64.deb ... 139s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 139s Selecting previously unselected package r-bioc-genomicfeatures. 139s Preparing to unpack .../255-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 139s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 139s Selecting previously unselected package r-cran-mass. 139s Preparing to unpack .../256-r-cran-mass_7.3-65-1_amd64.deb ... 139s Unpacking r-cran-mass (7.3-65-1) ... 139s Selecting previously unselected package r-bioc-grohmm. 139s Preparing to unpack .../257-r-bioc-grohmm_1.40.3-2_amd64.deb ... 139s Unpacking r-bioc-grohmm (1.40.3-2) ... 139s Selecting previously unselected package r-bioc-org.hs.eg.db. 139s Preparing to unpack .../258-r-bioc-org.hs.eg.db_3.20.0-3_all.deb ... 139s Unpacking r-bioc-org.hs.eg.db (3.20.0-3) ... 141s Setting up libjs-json (0~20221030+~1.0.8-1) ... 141s Setting up javascript-common (12) ... 141s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 141s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 141s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 141s Setting up libncurses-dev:amd64 (6.5+20250216-2) ... 141s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 141s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 141s Setting up libzstd-dev:amd64 (1.5.6+dfsg-2) ... 141s Setting up libxpm4:amd64 (1:3.5.17-1build2) ... 141s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 141s Setting up libxi6:amd64 (2:1.8.2-1) ... 141s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 141s Setting up libdatrie1:amd64 (0.2.13-3build1) ... 141s Setting up libjs-popper.js (1.16.1+ds-6) ... 141s Setting up libxcb-render0:amd64 (1.17.0-2) ... 141s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 141s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 141s Setting up libjs-lunr (2.3.9~dfsg-2) ... 141s Setting up unzip (6.0-28ubuntu6) ... 141s Setting up liblatex-tounicode-perl (0.55-1) ... 141s Setting up x11-common (1:7.7+23ubuntu4) ... 141s Setting up node-html5shiv (3.7.3+dfsg-5) ... 141s Setting up libdeflate0:amd64 (1.23-2) ... 141s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 142s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 142s Setting up libreadline-dev:amd64 (8.2-6) ... 142s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libjs-modernizr (3.13.0-0.1) ... 142s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 142s Setting up libpcre2-16-0:amd64 (10.45-1) ... 142s Setting up libjs-es5-shim (4.6.7-2) ... 142s Setting up tex-common (6.19) ... 142s update-language: texlive-base not installed and configured, doing nothing! 142s Setting up libio-string-perl (1.08-4) ... 142s Setting up zip (3.0-14ubuntu2) ... 142s Setting up libpcre2-32-0:amd64 (10.45-1) ... 142s Setting up libblas3:amd64 (3.12.1-2) ... 142s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 142s Setting up libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 142s Setting up libpkgconf3:amd64 (1.8.1-4) ... 142s Setting up libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 142s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 142s Setting up t1utils (1.41-4build3) ... 142s Setting up libquadmath0:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 142s Setting up libjs-d3 (3.5.17-4) ... 142s Setting up fonts-dejavu-mono (2.37-8) ... 142s Setting up libmpc3:amd64 (1.3.1-1build2) ... 142s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 142s Setting up libmpfi0:amd64 (1.5.4+ds-4) ... 142s Setting up icu-devtools (76.1-1ubuntu2) ... 142s Setting up fonts-dejavu-core (2.37-8) ... 142s Setting up pkgconf-bin (1.8.1-4) ... 142s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 142s Setting up libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 142s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libwebp7:amd64 (1.5.0-0.1) ... 142s Setting up liblzma-dev:amd64 (5.6.4-1ubuntu1) ... 142s Setting up libubsan1:amd64 (15-20250404-0ubuntu1) ... 142s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 142s Setting up libpcre2-posix3:amd64 (10.45-1) ... 142s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 142s Setting up libhwasan0:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libasan8:amd64 (15-20250404-0ubuntu1) ... 142s Setting up fonts-lmodern (2.005-1) ... 142s Setting up liblua5.4-0:amd64 (5.4.7-1) ... 142s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 142s Setting up libthai-data (0.1.29-2build1) ... 142s Setting up node-bootstrap-sass (3.4.3-2) ... 142s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 142s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 142s Setting up libjs-bootstrap4 (4.6.1+dfsg1-5) ... 142s Setting up libpaper2:amd64 (2.2.5-0.3) ... 142s Setting up pandoc-data (3.1.11.1-3build1) ... 142s Setting up libtsan2:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 142s Setting up libisl23:amd64 (0.27-1) ... 142s Setting up libdeflate-dev:amd64 (1.23-2) ... 142s Setting up node-normalize.css (8.0.1-5) ... 142s Setting up libicu-dev:amd64 (76.1-1ubuntu2) ... 142s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 142s Setting up xdg-utils (1.2.1-2ubuntu1) ... 142s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 142s Setting up libcc1-0:amd64 (15-20250404-0ubuntu1) ... 142s Setting up liblsan0:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libblas-dev:amd64 (3.12.1-2) ... 142s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 142s Setting up dctrl-tools (2.24-3build3) ... 142s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 142s Setting up libitm1:amd64 (15-20250404-0ubuntu1) ... 142s Setting up libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 142s Setting up libbz2-dev:amd64 (1.0.8-6) ... 142s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 142s Setting up libpotrace0:amd64 (1.16-2build1) ... 142s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 142s Setting up libice6:amd64 (2:1.1.1-1) ... 142s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 142s Setting up liblapack3:amd64 (3.12.1-2) ... 142s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 142s Setting up libpcre2-dev:amd64 (10.45-1) ... 142s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 142s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 142s Setting up libpng-dev:amd64 (1.6.47-1.1) ... 142s Setting up libpaper-utils (2.2.5-0.3) ... 142s Setting up libbibtex-parser-perl (1.05+dfsg-1) ... 142s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 142s Setting up pkgconf:amd64 (1.8.1-4) ... 142s Setting up libthai0:amd64 (0.1.29-2build1) ... 142s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 142s Setting up libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 142s Setting up pandoc (3.1.11.1+ds-2) ... 142s Setting up liblapack-dev:amd64 (3.12.1-2) ... 142s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 142s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 142s Setting up cpp-14 (14.2.0-19ubuntu2) ... 142s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 142s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 142s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 142s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 142s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 142s Setting up libsm6:amd64 (2:1.2.4-1) ... 142s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 142s Setting up libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 142s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 144s Regenerating fonts cache... done. 144s Setting up libxft2:amd64 (2.3.6-1build1) ... 144s Setting up libboost1.83-dev:amd64 (1.83.0-4.2ubuntu1) ... 144s Setting up libtk8.6:amd64 (8.6.16-1) ... 144s Setting up libpango-1.0-0:amd64 (1.56.3-1) ... 144s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 144s Setting up libcairo2:amd64 (1.18.4-1) ... 144s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 144s Setting up cpp (4:14.2.0-1ubuntu1) ... 144s Setting up libboost-dev:amd64 (1.83.0.2ubuntu1) ... 144s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 144s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... 144s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... 144s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 144s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 144s Setting up libxaw7:amd64 (2:1.0.16-1) ... 144s Setting up gcc-14 (14.2.0-19ubuntu2) ... 144s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 144s Setting up r-base-core (4.5.0-3) ... 144s Creating config file /etc/R/Renviron with new version 145s Setting up r-cran-crayon (1.5.3-1) ... 145s Setting up r-cran-sourcetools (0.1.7-1-1) ... 145s Setting up r-cran-futile.options (1.0.1-3build1) ... 145s Setting up r-cran-lattice (0.22-6-1) ... 145s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 145s Setting up r-cran-formatr (1.14-2) ... 145s Setting up r-cran-xml (3.99-0.18-1) ... 145s Setting up r-cran-locfit (1.5-9.12-1) ... 145s Setting up texlive-binaries (2024.20240313.70630+ds-6) ... 145s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 145s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 145s Setting up r-cran-statmod (1.5.0-1) ... 145s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 145s Setting up r-cran-commonmark (1.9.5-1) ... 145s Setting up g++-14 (14.2.0-19ubuntu2) ... 145s Setting up r-cran-rjson (0.2.23-1) ... 145s Setting up r-cran-r6 (2.6.1-1) ... 145s Setting up r-cran-pkgkitten (0.2.4-1) ... 145s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 145s Setting up texlive-base (2024.20250309-1) ... 145s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 145s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 146s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 146s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 146s Setting up r-cran-magrittr (2.0.3-1) ... 146s Setting up r-cran-rappdirs (0.3.3-1) ... 146s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 146s Setting up r-cran-littler (0.3.20-2) ... 146s Setting up r-cran-bh (1.84.0-1) ... 146s Setting up r-cran-fs (1.6.5+dfsg-1) ... 146s Setting up r-cran-rcpp (1.0.14-1) ... 146s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 146s Setting up r-cran-codetools (0.2-20-1) ... 146s Setting up r-bioc-biocgenerics (0.52.0-2) ... 146s Setting up r-cran-rlang (1.1.5-3) ... 146s Setting up r-cran-matrixstats (1.5.0-1) ... 146s Setting up littler (0.3.20-2) ... 146s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 146s Setting up r-cran-xfun (0.51+dfsg-1) ... 146s Setting up r-cran-sys (3.4.3-1) ... 146s Setting up r-cran-plogr (0.2.0-3build1) ... 146s Setting up r-cran-withr (3.0.2+dfsg-1) ... 146s Setting up r-cran-mime (0.12-2) ... 146s Setting up r-cran-base64enc (0.1-3-3) ... 146s Setting up r-cran-abind (1.4-8-1) ... 146s Setting up r-cran-digest (0.6.37-1) ... 146s Setting up r-cran-yaml (2.3.10-1) ... 146s Setting up r-cran-lambda.r (1.2.4-2build1) ... 146s Setting up r-cran-evaluate (1.0.3-1) ... 146s Setting up r-cran-dbi (1.2.3-1) ... 146s Setting up r-cran-highr (0.11+dfsg-1) ... 146s Setting up r-cran-mass (7.3-65-1) ... 146s Setting up r-cran-snow (1:0.4.4-2) ... 146s Setting up r-cran-glue (1.8.0-1) ... 146s Setting up r-cran-bit (4.6.0+dfsg-1) ... 146s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 146s Setting up r-cran-xtable (1:1.8-4-2) ... 146s Setting up r-cran-cli (3.6.4-1) ... 146s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 146s Setting up r-cran-bitops (1.0-9-1) ... 146s Setting up r-bioc-biocversion (3.20.0-2) ... 146s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 146s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 146s Setting up gcc (4:14.2.0-1ubuntu1) ... 146s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 146s Setting up r-cran-askpass (1.2.1-1) ... 146s Setting up r-cran-fastmap (1.2.0-1) ... 146s Setting up r-cran-png (0.1-8-1build2) ... 146s Setting up r-bioc-biobase (2.66.0-2) ... 146s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 146s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 146s Setting up texlive-latex-base (2024.20250309-1) ... 146s Setting up r-cran-cpp11 (0.5.2-1) ... 146s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 146s Setting up r-cran-futile.logger (1.4.3-4build1) ... 146s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 146s Setting up r-cran-later (1.4.1+dfsg-1) ... 146s Setting up r-cran-matrix (1.7-3-1) ... 146s Setting up r-cran-htmltools (0.5.8.1-1) ... 146s Setting up r-cran-tinytex (0.56-1) ... 146s Setting up r-cran-knitr (1.50+dfsg-1) ... 146s Setting up g++ (4:14.2.0-1ubuntu1) ... 146s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 146s Setting up r-cran-cachem (1.1.0-1) ... 146s Setting up r-cran-sass (0.4.9+dfsg-1) ... 146s Setting up build-essential (12.12ubuntu1) ... 146s Setting up r-bioc-iranges (2.40.1-3) ... 146s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 146s Setting up r-cran-restfulr (0.0.15-1) ... 146s Setting up r-cran-vctrs (0.6.5-1) ... 146s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 146s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 146s Setting up r-bioc-biocparallel (1.40.0-2) ... 146s Setting up r-bioc-edger (4.4.2+dfsg-1) ... 146s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 146s Setting up r-cran-fontawesome (0.5.3-1) ... 146s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 146s Setting up gfortran (4:14.2.0-1ubuntu1) ... 146s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 146s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 146s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 146s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 146s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 146s Setting up texlive-bibtex-extra (2024.20250309-2) ... 146s Setting up r-cran-httr (1.4.7+dfsg-1) ... 146s Setting up r-cran-memoise (2.0.1-1) ... 146s Setting up r-cran-promises (1.3.2+dfsg-1) ... 146s Setting up r-cran-blob (1.2.4-1) ... 146s Setting up r-bioc-xvector (0.46.0-2) ... 146s Setting up r-cran-rsqlite (2.3.9-1) ... 146s Setting up r-base-dev (4.5.0-3) ... 146s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 146s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 146s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 146s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 146s Setting up r-cran-bslib (0.9.0+dfsg-1syncable1) ... 146s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 146s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 146s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 146s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 146s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 146s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 146s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 146s Setting up r-cran-bookdown (0.42+dfsg-1) ... 146s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 146s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 146s Setting up r-bioc-annotationdbi (1.68.0-2) ... 146s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ... 146s Setting up r-bioc-genomicalignments (1.42.0-2) ... 146s Setting up r-bioc-org.hs.eg.db (3.20.0-3) ... 146s Setting up r-bioc-rtracklayer (1.66.0-2) ... 146s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 146s Setting up r-bioc-grohmm (1.40.3-2) ... 146s Processing triggers for libc-bin (2.41-6ubuntu1) ... 146s Processing triggers for man-db (2.13.0-1) ... 148s Processing triggers for install-info (7.1.1-1) ... 148s Processing triggers for tex-common (6.19) ... 149s Running updmap-sys. This may take some time... done. 149s Running mktexlsr /var/lib/texmf ... done. 149s Building format(s) --all. 177s This may take some time... done. 178s autopkgtest [22:14:47]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 178s autopkgtest [22:14:47]: test pkg-r-autopkgtest: [----------------------- 178s Test: Try to load the R library groHMM 178s 179s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 179s Copyright (C) 2025 The R Foundation for Statistical Computing 179s Platform: x86_64-pc-linux-gnu 179s 179s R is free software and comes with ABSOLUTELY NO WARRANTY. 179s You are welcome to redistribute it under certain conditions. 179s Type 'license()' or 'licence()' for distribution details. 179s 179s R is a collaborative project with many contributors. 179s Type 'contributors()' for more information and 179s 'citation()' on how to cite R or R packages in publications. 179s 179s Type 'demo()' for some demos, 'help()' for on-line help, or 179s 'help.start()' for an HTML browser interface to help. 179s Type 'q()' to quit R. 179s 179s > library('groHMM') 179s Loading required package: MASS 179s Loading required package: parallel 179s Loading required package: S4Vectors 179s Loading required package: stats4 179s Loading required package: BiocGenerics 179s 179s Attaching package: ‘BiocGenerics’ 179s 179s The following objects are masked from ‘package:stats’: 179s 179s IQR, mad, sd, var, xtabs 179s 179s The following objects are masked from ‘package:base’: 179s 179s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 179s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 179s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 179s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 179s Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff, 179s table, tapply, union, unique, unsplit, which.max, which.min 179s 179s 179s Attaching package: ‘S4Vectors’ 179s 179s The following object is masked from ‘package:utils’: 179s 179s findMatches 179s 179s The following objects are masked from ‘package:base’: 179s 179s expand.grid, I, unname 179s 179s Loading required package: IRanges 180s Loading required package: GenomeInfoDb 180s Loading required package: GenomicRanges 180s Loading required package: GenomicAlignments 180s Loading required package: SummarizedExperiment 180s Loading required package: MatrixGenerics 180s Loading required package: matrixStats 181s 181s Attaching package: ‘MatrixGenerics’ 181s 181s The following objects are masked from ‘package:matrixStats’: 181s 181s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 181s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 181s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 181s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 181s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 181s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 181s colWeightedMeans, colWeightedMedians, colWeightedSds, 181s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 181s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 181s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 181s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 181s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 181s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 181s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 181s rowWeightedSds, rowWeightedVars 181s 181s Loading required package: Biobase 181s Welcome to Bioconductor 181s 181s Vignettes contain introductory material; view with 181s 'browseVignettes()'. To cite Bioconductor, see 181s 'citation("Biobase")', and for packages 'citation("pkgname")'. 181s 181s 181s Attaching package: ‘Biobase’ 181s 181s The following object is masked from ‘package:MatrixGenerics’: 181s 181s rowMedians 181s 181s The following objects are masked from ‘package:matrixStats’: 181s 181s anyMissing, rowMedians 181s 184s Loading required package: Biostrings 184s Loading required package: XVector 184s 184s Attaching package: ‘Biostrings’ 184s 184s The following object is masked from ‘package:base’: 184s 184s strsplit 184s 184s Loading required package: Rsamtools 185s Loading required package: rtracklayer 186s > 186s Other tests are currently unsupported! 186s They will be progressively added. 187s autopkgtest [22:14:56]: test pkg-r-autopkgtest: -----------------------] 187s pkg-r-autopkgtest PASS 187s autopkgtest [22:14:56]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 188s autopkgtest [22:14:57]: @@@@@@@@@@@@@@@@@@@@ summary 188s pkg-r-autopkgtest PASS 205s nova [W] Skipping flock for amd64 205s Creating nova instance adt-questing-amd64-r-bioc-grohmm-20250503-221149-juju-7f2275-prod-proposed-migration-environment-20-9f2760c9-70cc-40d5-861f-e19c48a9b3d4 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 205s nova [W] Timed out waiting for 5184b335-a5f3-4f48-8972-37ff30846e8e to get deleted.