0s autopkgtest [12:55:57]: starting date and time: 2025-05-06 12:55:57+0000 0s autopkgtest [12:55:57]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [12:55:57]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c_po7__i/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:onetbb,src:r-base --apt-upgrade r-bioc-dada2 --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=onetbb/2022.1.0-1 r-base/4.5.0-3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@sto01-10.secgroup --name adt-questing-amd64-r-bioc-dada2-20250506-114554-juju-7f2275-prod-proposed-migration-environment-20-01d88c02-4de0-4080-bf52-f45cf887e6ca --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 331s autopkgtest [13:01:28]: testbed dpkg architecture: amd64 331s autopkgtest [13:01:28]: testbed apt version: 3.0.0 331s autopkgtest [13:01:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 331s autopkgtest [13:01:28]: testbed release detected to be: None 332s autopkgtest [13:01:29]: updating testbed package index (apt update) 332s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 332s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 332s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 332s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 332s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB] 332s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [595 kB] 332s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [72.4 kB] 332s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [106 kB] 332s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [150 kB] 332s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [264 kB] 332s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [669 kB] 333s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [18.4 kB] 333s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [5028 B] 333s Fetched 2018 kB in 1s (2870 kB/s) 333s Reading package lists... 334s autopkgtest [13:01:31]: upgrading testbed (apt dist-upgrade and autopurge) 334s Reading package lists... 334s Building dependency tree... 334s Reading state information... 334s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 334s Starting 2 pkgProblemResolver with broken count: 0 334s Done 335s Entering ResolveByKeep 335s 335s Calculating upgrade... 335s The following packages will be upgraded: 335s libperl5.40 perl perl-base perl-modules-5.40 python3-dbus 335s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 335s Need to get 10.3 MB of archives. 335s After this operation, 7168 B of additional disk space will be used. 335s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 335s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 perl amd64 5.40.1-3 [262 kB] 335s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 335s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 336s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dbus amd64 1.4.0-1 [102 kB] 336s Fetched 10.3 MB in 1s (18.3 MB/s) 336s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 336s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 336s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 336s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 336s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 336s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 336s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 336s Setting up perl-base (5.40.1-3) ... 336s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 336s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 336s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 337s Preparing to unpack .../python3-dbus_1.4.0-1_amd64.deb ... 337s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ... 337s Setting up python3-dbus (1.4.0-1) ... 337s Setting up perl-modules-5.40 (5.40.1-3) ... 337s Setting up libperl5.40:amd64 (5.40.1-3) ... 337s Setting up perl (5.40.1-3) ... 337s Processing triggers for man-db (2.13.1-1) ... 337s Processing triggers for libc-bin (2.41-6ubuntu1) ... 338s Reading package lists... 338s Building dependency tree... 338s Reading state information... 338s Starting pkgProblemResolver with broken count: 0 338s Starting 2 pkgProblemResolver with broken count: 0 338s Done 338s Solving dependencies... 338s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 340s autopkgtest [13:01:37]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 340s autopkgtest [13:01:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-dada2 342s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-dada2 1.34.0+dfsg-2 (dsc) [2270 B] 342s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-dada2 1.34.0+dfsg-2 (tar) [2224 kB] 342s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-dada2 1.34.0+dfsg-2 (diff) [3832 B] 342s gpgv: Signature made Mon Jan 13 22:01:47 2025 UTC 342s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 342s gpgv: issuer "crusoe@debian.org" 342s gpgv: Can't check signature: No public key 342s dpkg-source: warning: cannot verify inline signature for ./r-bioc-dada2_1.34.0+dfsg-2.dsc: no acceptable signature found 342s autopkgtest [13:01:39]: testing package r-bioc-dada2 version 1.34.0+dfsg-2 342s autopkgtest [13:01:39]: build not needed 349s autopkgtest [13:01:46]: test pkg-r-autopkgtest: preparing testbed 349s Reading package lists... 349s Building dependency tree... 349s Reading state information... 349s Starting pkgProblemResolver with broken count: 18 349s Starting 2 pkgProblemResolver with broken count: 18 349s Investigating (0) r-cran-tibble:amd64 < none -> 3.2.1+dfsg-3 @un puN Ib > 349s Broken r-cran-tibble:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.2) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-tibble:amd64 118 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-tibble:amd64 118 349s Investigating (0) r-cran-vctrs:amd64 < none -> 0.6.5-1 @un puN Ib > 349s Broken r-cran-vctrs:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-vctrs:amd64 89 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-vctrs:amd64 89 349s Investigating (0) r-cran-shiny:amd64 < none -> 1.10.0+dfsg-2 @un puN Ib > 349s Broken r-cran-shiny:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-shiny:amd64 87 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-shiny:amd64 87 349s Investigating (0) r-cran-sass:amd64 < none -> 0.4.9+dfsg-1 @un puN Ib > 349s Broken r-cran-sass:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-sass:amd64 81 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-sass:amd64 81 349s Investigating (0) r-cran-bslib:amd64 < none -> 0.9.0+dfsg-3 @un puN Ib > 349s Broken r-cran-bslib:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-bslib:amd64 78 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-bslib:amd64 78 349s Investigating (0) r-cran-htmltools:amd64 < none -> 0.5.8.1-1 @un puN Ib > 349s Broken r-cran-htmltools:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-htmltools:amd64 77 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-htmltools:amd64 77 349s Investigating (0) r-cran-lifecycle:amd64 < none -> 1.0.4+dfsg-1 @un puN Ib > 349s Broken r-cran-lifecycle:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-lifecycle:amd64 53 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-lifecycle:amd64 53 349s Investigating (0) r-cran-fontawesome:amd64 < none -> 0.5.3-1 @un puN Ib > 349s Broken r-cran-fontawesome:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.6) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-fontawesome:amd64 44 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-fontawesome:amd64 44 349s Investigating (0) r-cran-ggplot2:amd64 < none -> 3.5.1+dfsg-1 @un puN Ib > 349s Broken r-cran-ggplot2:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-ggplot2:amd64 40 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-ggplot2:amd64 40 349s Investigating (0) r-cran-pillar:amd64 < none -> 1.10.1+dfsg-1 @un puN Ib > 349s Broken r-cran-pillar:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.2) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-pillar:amd64 22 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-pillar:amd64 22 349s Investigating (0) r-cran-later:amd64 < none -> 1.4.1+dfsg-1 @un puN Ib > 349s Broken r-cran-later:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-later:amd64 20 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-later:amd64 20 349s Investigating (0) r-cran-scales:amd64 < none -> 1.3.0-1 @un puN Ib > 349s Broken r-cran-scales:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-scales:amd64 16 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-scales:amd64 16 349s Investigating (0) r-cran-cachem:amd64 < none -> 1.1.0-1 @un puN Ib > 349s Broken r-cran-cachem:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-cachem:amd64 12 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-cachem:amd64 12 349s Investigating (0) r-cran-gtable:amd64 < none -> 0.3.6+dfsg-1 @un puN Ib > 349s Broken r-cran-gtable:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.1.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-gtable:amd64 11 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-gtable:amd64 11 349s Investigating (0) r-cran-promises:amd64 < none -> 1.3.2+dfsg-1 @un puN Ib > 349s Broken r-cran-promises:amd64 Depends on r-cran-rlang:amd64 < none @un pH > 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-promises:amd64 10 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-promises:amd64 10 349s Investigating (0) r-cran-memoise:amd64 < none -> 2.0.1-1 @un puN Ib > 349s Broken r-cran-memoise:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 0.4.10) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-memoise:amd64 3 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-memoise:amd64 3 349s Investigating (0) r-cran-rcppparallel:amd64 < none -> 5.1.7+dfsg-6 @un puN Ib > 349s Broken r-cran-rcppparallel:amd64 Depends on libtbb12:amd64 < none -> 2022.1.0-1 @un puN > (< 2022.0.0-99) 349s Considering libtbb12:amd64 1 as a solution to r-cran-rcppparallel:amd64 0 349s Re-Instated libtbb12:amd64 349s Broken r-cran-rcppparallel:amd64 Depends on libtbb-dev:amd64 < none | 2022.1.0-1 @un uH > (>= 2021.5.0) 349s Considering libtbb-dev:amd64 0 as a solution to r-cran-rcppparallel:amd64 0 349s Re-Instated libtbb-dev:amd64 349s Investigating (0) r-cran-stringr:amd64 < none -> 1.5.1-1 @un puN Ib > 349s Broken r-cran-stringr:amd64 Depends on r-cran-rlang:amd64 < none @un pH > (>= 1.0.0) 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-stringr:amd64 0 349s Considering r-cran-rlang:amd64 9 as a solution to r-cran-stringr:amd64 0 349s Done 349s Some packages could not be installed. This may mean that you have 349s requested an impossible situation or if you are using the unstable 349s distribution that some required packages have not yet been created 349s or been moved out of Incoming. 349s The following information may help to resolve the situation: 349s 349s The following packages have unmet dependencies: 349s r-cran-bslib : Depends: r-cran-rlang but it is not installable 349s r-cran-cachem : Depends: r-cran-rlang but it is not installable 349s r-cran-fontawesome : Depends: r-cran-rlang (>= 1.0.6) but it is not installable 349s r-cran-ggplot2 : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 349s r-cran-gtable : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 349s r-cran-htmltools : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 349s r-cran-later : Depends: r-cran-rlang but it is not installable 349s r-cran-lifecycle : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 349s r-cran-memoise : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 349s r-cran-pillar : Depends: r-cran-rlang (>= 1.0.2) but it is not installable 349s r-cran-promises : Depends: r-cran-rlang but it is not installable 349s r-cran-rcppparallel : Depends: libtbb12 (< 2022.0.0-99) but 2022.1.0-1 is to be installed 349s r-cran-sass : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 349s r-cran-scales : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 349s r-cran-shiny : Depends: r-cran-rlang (>= 0.4.10) but it is not installable 349s r-cran-stringr : Depends: r-cran-rlang (>= 1.0.0) but it is not installable 349s r-cran-tibble : Depends: r-cran-rlang (>= 1.0.2) but it is not installable 349s r-cran-vctrs : Depends: r-cran-rlang (>= 1.1.0) but it is not installable 349s E: Unable to correct problems, you have held broken packages. 349s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from questing-proposed 350s Reading package lists... 350s Building dependency tree... 350s Reading state information... 350s Starting pkgProblemResolver with broken count: 1 350s Starting 2 pkgProblemResolver with broken count: 1 350s Investigating (0) r-cran-rcppparallel:amd64 < none -> 5.1.7+dfsg-6 @un puN Ib > 350s Broken r-cran-rcppparallel:amd64 Depends on libtbb12:amd64 < none -> 2022.1.0-1 @un puN > (< 2022.0.0-99) 350s Considering libtbb12:amd64 1 as a solution to r-cran-rcppparallel:amd64 0 350s Re-Instated libtbb12:amd64 350s Broken r-cran-rcppparallel:amd64 Depends on libtbb-dev:amd64 < none | 2022.1.0-1 @un uH > (>= 2021.5.0) 350s Considering libtbb-dev:amd64 0 as a solution to r-cran-rcppparallel:amd64 0 350s Re-Instated libtbb-dev:amd64 350s Done 350s Some packages could not be installed. This may mean that you have 350s requested an impossible situation or if you are using the unstable 350s distribution that some required packages have not yet been created 350s or been moved out of Incoming. 350s The following information may help to resolve the situation: 350s 350s The following packages have unmet dependencies: 350s r-cran-rcppparallel : Depends: libtbb12 (< 2022.0.0-99) but 2022.1.0-1 is to be installed 350s E: Unable to correct problems, you have held broken packages. 350s pkg-r-autopkgtest FAIL badpkg 350s blame: r-bioc-dada2 350s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 350s autopkgtest [13:01:47]: @@@@@@@@@@@@@@@@@@@@ summary 350s pkg-r-autopkgtest FAIL badpkg 350s blame: r-bioc-dada2 350s badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U. 509s nova [W] Skipping flock for amd64 509s Creating nova instance adt-questing-amd64-r-bioc-dada2-20250506-114554-juju-7f2275-prod-proposed-migration-environment-20-01d88c02-4de0-4080-bf52-f45cf887e6ca from image adt/ubuntu-questing-amd64-server-20250506.img (UUID cb061278-8f5e-47a1-be24-4f5e6435dc1a)... 509s nova [W] Timed out waiting for c8d531ae-1e80-415f-a390-9d64a5171395 to get deleted.