0s autopkgtest [22:09:34]: starting date and time: 2025-05-03 22:09:34+0000 0s autopkgtest [22:09:34]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [22:09:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4bojp25x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck,src:r-bioc-graph,src:r-bioc-iranges,src:r-bioc-pwalign,src:r-cran-rlang,src:r-cran-seurat,src:r-cran-sf --apt-upgrade r-bioc-cner --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2 r-bioc-graph/1.84.1-2 r-bioc-iranges/2.40.1-3 r-bioc-pwalign/1.2.0-3 r-cran-rlang/1.1.5-3 r-cran-seurat/5.2.1-5 r-cran-sf/1.0-19+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-2.secgroup --name adt-questing-amd64-r-bioc-cner-20250503-220934-juju-7f2275-prod-proposed-migration-environment-2-15228f43-42cb-4da1-9098-016f3668ca49 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [22:10:26]: testbed dpkg architecture: amd64 52s autopkgtest [22:10:26]: testbed apt version: 3.0.0 52s autopkgtest [22:10:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [22:10:26]: testbed release detected to be: None 53s autopkgtest [22:10:27]: updating testbed package index (apt update) 54s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 54s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.6 kB] 54s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1412 kB] 54s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 54s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [201 kB] 54s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [145 kB] 54s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [573 kB] 54s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1422 kB] 54s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [24.0 kB] 54s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [51.1 kB] 55s Fetched 4118 kB in 1s (3596 kB/s) 56s Reading package lists... 56s autopkgtest [22:10:30]: upgrading testbed (apt dist-upgrade and autopurge) 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 58s Starting 2 pkgProblemResolver with broken count: 0 58s Done 58s Entering ResolveByKeep 59s 59s Calculating upgrade... 59s The following packages will be upgraded: 59s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 59s libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient 59s sos 59s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 2693 kB of archives. 59s After this operation, 104 kB disk space will be freed. 59s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 59s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 59s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 59s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 60s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 60s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 60s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 60s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 60s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 60s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 60s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 60s Preconfiguring packages ... 60s Fetched 2693 kB in 1s (3345 kB/s) 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 61s Preparing to unpack .../debianutils_5.22_amd64.deb ... 61s Unpacking debianutils (5.22) over (5.21) ... 61s Setting up debianutils (5.22) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 61s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 61s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 61s Setting up libsepol2:amd64 (3.8.1-1) ... 61s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 61s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 61s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 61s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 61s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 61s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 61s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 61s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 61s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 61s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 61s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 61s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 61s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 62s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 62s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 62s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 62s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 62s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 62s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 62s Setting up sos (4.9.1-1) ... 63s Setting up libnftnl11:amd64 (1.2.9-1) ... 63s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 64s Setting up python3-lazr.restfulclient (0.14.6-3) ... 65s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 65s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 65s Setting up libmbim-proxy (1.32.0-1) ... 65s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 65s Setting up libqmi-proxy (1.36.0-1) ... 65s Processing triggers for libc-bin (2.41-6ubuntu1) ... 65s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 65s Processing triggers for man-db (2.13.0-1) ... 67s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 68s Solving dependencies... 68s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 68s autopkgtest [22:10:42]: rebooting testbed after setup commands that affected boot 92s autopkgtest [22:11:06]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 94s autopkgtest [22:11:08]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-cner 97s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-cner 1.42.0+dfsg-2 (dsc) [2436 B] 97s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-cner 1.42.0+dfsg-2 (tar) [7750 kB] 97s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-cner 1.42.0+dfsg-2 (diff) [5280 B] 97s gpgv: Signature made Mon Jan 13 20:01:02 2025 UTC 97s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 97s gpgv: issuer "crusoe@debian.org" 97s gpgv: Can't check signature: No public key 97s dpkg-source: warning: cannot verify inline signature for ./r-bioc-cner_1.42.0+dfsg-2.dsc: no acceptable signature found 98s autopkgtest [22:11:12]: testing package r-bioc-cner version 1.42.0+dfsg-2 98s autopkgtest [22:11:12]: build not needed 100s autopkgtest [22:11:14]: test pkg-r-autopkgtest: preparing testbed 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 101s Starting pkgProblemResolver with broken count: 0 102s Starting 2 pkgProblemResolver with broken count: 0 102s Done 102s The following NEW packages will be installed: 102s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 102s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 102s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 102s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 102s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 102s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 102s javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3 102s libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 libdatrie1 102s libdeflate-dev libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev 102s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 102s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 102s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 102s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 102s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 102s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 102s libjs-popper.js libjs-prettify libjs-sifter.js 102s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 102s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 102s libmpfi0 libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 102s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 102s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 102s libquadmath0 libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev 102s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 102s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 102s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 102s libxss1 libxt6t64 libzstd-dev libzzip-0-13t64 littler node-bootstrap-sass 102s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 102s pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 102s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 102s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 102s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 102s r-bioc-biovizbase r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray 102s r-bioc-ensembldb r-bioc-genomeinfodb r-bioc-genomeinfodbdata 102s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 102s r-bioc-go.db r-bioc-gviz r-bioc-iranges r-bioc-keggrest 102s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-pwalign r-bioc-rhtslib 102s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 102s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-ucsc.utils 102s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 102s r-cran-acepack r-cran-askpass r-cran-backports r-cran-base64enc r-cran-bh 102s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 102s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 102s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 102s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 102s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 102s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 102s r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 102s r-cran-filelock r-cran-fontawesome r-cran-foreign r-cran-formatr 102s r-cran-formula r-cran-fs r-cran-futile.logger r-cran-futile.options 102s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gridextra r-cran-gtable 102s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 102s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-interp 102s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 102s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 102s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 102s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 102s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 102s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 102s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png 102s r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits 102s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 102s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs 102s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 102s r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 102s r-cran-rpart r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-sass 102s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 102s r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat r-cran-tibble 102s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 102s r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo 102s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 102s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 102s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 103s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 103s Need to get 539 MB of archives. 103s After this operation, 1574 MB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 103s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 103s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 104s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 104s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 104s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 104s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB] 104s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 104s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 104s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 104s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 104s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 104s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 104s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 105s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 105s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 105s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 106s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 106s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 106s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 106s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 106s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB] 107s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB] 107s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 107s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 107s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 107s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 107s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 107s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 107s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 107s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 107s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 107s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 107s Get:34 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 107s Get:35 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 107s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 107s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 107s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB] 107s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB] 108s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB] 108s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 108s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 108s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 108s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 javascript-common all 12 [5216 B] 108s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 108s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 liblatex-tounicode-perl all 0.55-1 [28.8 kB] 108s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB] 108s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 108s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 108s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 libboost1.83-dev amd64 1.83.0-4.2ubuntu1 [10.7 MB] 108s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-dev amd64 1.83.0.2ubuntu1 [4468 B] 108s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 108s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 108s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 108s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 108s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 108s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 108s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 108s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 108s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 108s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 108s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 108s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 108s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 108s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 109s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 109s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 109s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 109s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 109s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 109s Get:71 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 109s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 109s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-5 [531 kB] 109s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 109s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 109s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 109s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 109s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 109s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 109s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 109s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 109s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 109s Get:83 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 109s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 109s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 109s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libkpathsea6 amd64 2024.20240313.70630+ds-6 [67.3 kB] 109s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 109s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 110s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 110s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 liblua5.4-0 amd64 5.4.7-1 [196 kB] 110s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 libmpfi0 amd64 1.5.4+ds-4 [35.5 kB] 110s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 110s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 110s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 110s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 110s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 110s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 110s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 110s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 110s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 110s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 110s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 110s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 110s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 110s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 110s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB] 110s Get:107 http://ftpmaster.internal/ubuntu questing/universe amd64 libpotrace0 amd64 1.16-2build1 [17.7 kB] 110s Get:108 http://ftpmaster.internal/ubuntu questing/universe amd64 libptexenc1 amd64 2024.20240313.70630+ds-6 [43.7 kB] 110s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 110s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 110s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 110s Get:112 http://ftpmaster.internal/ubuntu questing/universe amd64 libsynctex2 amd64 2024.20240313.70630+ds-6 [62.5 kB] 110s Get:113 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 110s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 110s Get:115 http://ftpmaster.internal/ubuntu questing/universe amd64 libtexlua53-5 amd64 2024.20240313.70630+ds-6 [145 kB] 110s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 110s Get:117 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 110s Get:118 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 111s Get:119 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 111s Get:120 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 111s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 111s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 111s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 111s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libxpm4 amd64 1:3.5.17-1build2 [36.5 kB] 111s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libxaw7 amd64 2:1.0.16-1 [207 kB] 111s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 111s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 111s Get:128 http://ftpmaster.internal/ubuntu questing/universe amd64 libzzip-0-13t64 amd64 0.13.78+dfsg.1-0.1 [30.0 kB] 111s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 111s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 111s Get:131 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 111s Get:132 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB] 112s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-littler amd64 0.3.20-2 [96.6 kB] 112s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 littler all 0.3.20-2 [2554 B] 112s Get:135 http://ftpmaster.internal/ubuntu questing/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 112s Get:136 http://ftpmaster.internal/ubuntu questing/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 112s Get:137 http://ftpmaster.internal/ubuntu questing/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 112s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc-data all 3.1.11.1-3build1 [78.8 kB] 112s Get:139 http://ftpmaster.internal/ubuntu questing/universe amd64 pandoc amd64 3.1.11.1+ds-2 [27.2 MB] 113s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB] 113s Get:141 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 113s Get:142 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 113s Get:143 http://ftpmaster.internal/ubuntu questing/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 113s Get:144 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B] 113s Get:145 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 113s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 113s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biobase amd64 2.66.0-2 [2332 kB] 113s Get:148 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-s4vectors amd64 0.44.0+dfsg-2 [2065 kB] 113s Get:149 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-iranges amd64 2.40.1-3 [2309 kB] 113s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dbi all 1.2.3-1 [853 kB] 113s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bit amd64 4.6.0+dfsg-1 [466 kB] 113s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bit64 amd64 4.6.0-1-1ubuntu2 [501 kB] 113s Get:153 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-cran-rlang amd64 1.1.5-3 [1721 kB] 113s Get:154 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cli amd64 3.6.4-1 [1394 kB] 113s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-glue amd64 1.8.0-1 [164 kB] 113s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 113s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 113s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 113s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fastmap amd64 1.2.0-1 [73.8 kB] 113s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cachem amd64 1.1.0-1 [74.1 kB] 113s Get:161 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 113s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 113s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 113s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cpp11 all 0.5.2-1 [233 kB] 113s Get:165 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rsqlite amd64 2.3.9-1 [1467 kB] 113s Get:166 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-curl amd64 6.2.1+dfsg-1ubuntu1 [197 kB] 113s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jsonlite amd64 1.9.1+dfsg-1 [447 kB] 113s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mime amd64 0.12-2 [35.8 kB] 113s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sys amd64 3.4.3-1 [45.3 kB] 113s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-askpass amd64 1.2.1-1 [24.9 kB] 113s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-openssl amd64 2.3.2+dfsg-1 [407 kB] 113s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r6 all 2.6.1-1 [101 kB] 113s Get:173 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 113s Get:174 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 113s Get:175 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 113s Get:176 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-xvector amd64 0.46.0-2 [620 kB] 113s Get:177 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 113s Get:178 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 114s Get:179 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 114s Get:180 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-crayon all 1.5.3-1 [165 kB] 114s Get:181 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biostrings amd64 2.74.1+dfsg-2 [13.3 MB] 114s Get:182 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 114s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 115s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xml amd64 3.99-0.18-1 [1748 kB] 115s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 115s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-annotate all 1.84.0+dfsg-2 [1870 kB] 115s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomicranges amd64 1.58.0+dfsg-2 [2083 kB] 115s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 115s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-annotationfilter all 1.30.0+dfsg-2 [247 kB] 115s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 115s Get:191 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 115s Get:192 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 115s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 115s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fansi amd64 1.0.6-1ubuntu1 [632 kB] 115s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-3 [419 kB] 115s Get:196 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-withr all 3.0.2+dfsg-1 [214 kB] 115s Get:197 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tidyselect amd64 1.2.1+dfsg-1 [222 kB] 115s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dplyr amd64 1.1.4-4 [1536 kB] 115s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-purrr amd64 1.0.4-1 [552 kB] 115s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringi amd64 1.8.4-1build1 [927 kB] 115s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 115s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 115s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB] 116s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 116s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB] 116s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 116s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-formatr all 1.14-2 [152 kB] 116s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 116s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 116s Get:210 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 116s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 116s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-codetools all 0.2-20-1 [90.5 kB] 116s Get:213 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 116s Get:214 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocparallel amd64 1.40.0-2 [1337 kB] 116s Get:215 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 116s Get:216 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-digest amd64 0.6.37-1 [200 kB] 116s Get:217 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltools amd64 0.5.8.1-1 [373 kB] 116s Get:218 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-evaluate all 1.0.3-1 [114 kB] 116s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xfun amd64 0.51+dfsg-1 [574 kB] 116s Get:220 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-highr all 0.11+dfsg-1 [38.5 kB] 116s Get:221 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-yaml amd64 2.3.10-1 [109 kB] 116s Get:222 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 116s Get:223 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-knitr all 1.50+dfsg-1 [840 kB] 116s Get:224 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 116s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fs amd64 1.6.5+dfsg-1 [246 kB] 116s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 116s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sass amd64 0.4.9+dfsg-1 [1001 kB] 116s Get:228 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bslib all 0.9.0+dfsg-1syncable1 [4563 kB] 116s Get:229 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-fontawesome all 0.5.3-1 [1331 kB] 116s Get:230 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tinytex all 0.56-1 [148 kB] 116s Get:231 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-modernizr all 3.13.0-0.1 [101 kB] 116s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 116s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcpp amd64 1.0.14-1 [1998 kB] 117s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-later amd64 1.4.1+dfsg-1 [154 kB] 117s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-promises amd64 1.3.2+dfsg-1 [291 kB] 117s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httpuv amd64 1.6.15+dfsg-1 [510 kB] 117s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 117s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-commonmark amd64 1.9.5-1 [138 kB] 117s Get:239 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 117s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 117s Get:241 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 117s Get:242 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bookdown all 0.42+dfsg-1 [1409 kB] 117s Get:243 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 117s Get:244 http://ftpmaster.internal/ubuntu questing/universe amd64 tex-common all 6.19 [29.8 kB] 117s Get:245 http://ftpmaster.internal/ubuntu questing/main amd64 t1utils amd64 1.41-4build3 [61.3 kB] 117s Get:246 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-binaries amd64 2024.20240313.70630+ds-6 [9789 kB] 117s Get:247 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-base all 2024.20250309-1 [22.7 MB] 118s Get:248 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-latex-base all 2024.20250309-1 [1276 kB] 118s Get:249 http://ftpmaster.internal/ubuntu questing/universe amd64 texlive-bibtex-extra all 2024.20250309-2 [79.3 MB] 121s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocversion all 3.20.0-2 [11.1 kB] 121s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB] 121s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 121s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 121s Get:254 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 121s Get:255 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-httr2 all 1.1.1-1 [752 kB] 121s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-xml2 amd64 1.3.8-1 [333 kB] 121s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biomart all 2.62.1+dfsg-1 [444 kB] 121s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-farver amd64 2.1.2-1 [1355 kB] 121s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-labeling all 0.4.3-1 [62.1 kB] 121s Get:260 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-colorspace amd64 2.1-1+dfsg-1 [1563 kB] 121s Get:261 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-munsell all 0.5.1-1 [213 kB] 121s Get:262 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 121s Get:263 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-viridislite all 0.4.2-2 [1088 kB] 121s Get:264 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-scales all 1.3.0-1 [603 kB] 121s Get:265 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gtable all 0.3.6+dfsg-1 [199 kB] 121s Get:266 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-isoband amd64 0.2.7-1 [1481 kB] 121s Get:267 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mass amd64 7.3-65-1 [1116 kB] 121s Get:268 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-lattice amd64 0.22-6-1 [1340 kB] 121s Get:269 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-nlme amd64 3.1.167-1 [2320 kB] 121s Get:270 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-matrix amd64 1.7-3-1 [4349 kB] 121s Get:271 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-mgcv amd64 1.9-1-1 [3252 kB] 121s Get:272 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB] 121s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-cluster amd64 2.1.8.1-1 [579 kB] 121s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-survival amd64 3.8-3-1 [8239 kB] 122s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rpart amd64 4.1.24-1 [670 kB] 122s Get:276 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-nnet amd64 7.3-20-1 [116 kB] 122s Get:277 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-foreign amd64 0.8.90-1 [250 kB] 122s Get:278 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-gridextra all 2.3-3build1 [1024 kB] 122s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-data.table amd64 1.17.0+dfsg-1 [2168 kB] 122s Get:280 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-backports amd64 1.5.0-2 [121 kB] 122s Get:281 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-checkmate amd64 2.3.2-1 [706 kB] 122s Get:282 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 122s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rstudioapi all 0.17.1-1 [299 kB] 122s Get:284 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-htmltable all 2.4.3-1 [388 kB] 122s Get:285 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-viridis all 0.6.5-1 [2770 kB] 122s Get:286 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-formula all 1.2-5-1 [158 kB] 122s Get:287 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-chron amd64 2.3-62-1 [189 kB] 122s Get:288 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 122s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 122s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.2-1 [1428 kB] 122s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 122s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 122s Get:293 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-acepack amd64 1.6.1-1 [91.2 kB] 122s Get:294 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-hmisc amd64 5.2-3-1 [3599 kB] 122s Get:295 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 122s Get:296 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-matrixstats amd64 1.5.0-1 [542 kB] 122s Get:297 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 122s Get:298 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-abind all 1.4-8-1 [66.9 kB] 122s Get:299 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-s4arrays amd64 1.6.0+dfsg-2 [698 kB] 122s Get:300 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-sparsearray amd64 1.6.2+dfsg-1 [1392 kB] 122s Get:301 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-delayedarray amd64 0.32.0+dfsg-2 [2064 kB] 122s Get:302 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 122s Get:303 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-bitops amd64 1.0-9-1 [30.3 kB] 123s Get:304 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rhtslib amd64 3.2.0+dfsg-2 [1499 kB] 123s Get:305 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rsamtools amd64 2.22.0+dfsg-2 [3745 kB] 123s Get:306 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomicalignments amd64 1.42.0-2 [2165 kB] 123s Get:307 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rcurl amd64 1.98-1.16+dfsg-1 [807 kB] 123s Get:308 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rjson amd64 0.2.23-1 [104 kB] 123s Get:309 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 123s Get:310 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-rtracklayer amd64 1.66.0-2 [5227 kB] 124s Get:311 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 124s Get:312 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-bsgenome all 1.74.0-2 [7001 kB] 124s Get:313 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-variantannotation amd64 1.52.0-2 [3642 kB] 124s Get:314 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-protgenerics all 1.38.0-2 [239 kB] 124s Get:315 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-ensembldb all 2.30.0+dfsg-3 [1520 kB] 124s Get:316 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biovizbase amd64 1.54.0-2 [2857 kB] 124s Get:317 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-bioc-pwalign amd64 1.2.0-3 [757 kB] 124s Get:318 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-clipr all 0.8.0-1 [53.5 kB] 124s Get:319 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-tzdb amd64 0.5.0-1 [538 kB] 124s Get:320 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-vroom amd64 1.6.5-1 [848 kB] 124s Get:321 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-readr amd64 2.1.5-1 [766 kB] 124s Get:322 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-plyr amd64 1.8.9-1 [832 kB] 124s Get:323 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-reshape2 amd64 1.4.4-2build1 [114 kB] 124s Get:324 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pracma all 2.4.4-3 [1710 kB] 124s Get:325 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-powerlaw all 1.0.0-1 [3725 kB] 125s Get:326 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-go.db all 3.20.0-2 [16.5 MB] 125s Get:327 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 125s Get:328 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.oo all 1.27.0-1 [979 kB] 125s Get:329 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB] 125s Get:330 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-cner amd64 1.42.0+dfsg-2 [8997 kB] 125s Get:331 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-gviz all 1.50.0+dfsg-2 [4881 kB] 126s Get:332 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-brio amd64 1.1.5-1 [39.0 kB] 126s Get:333 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-ps amd64 1.9.0-1 [408 kB] 126s Get:334 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-processx amd64 3.8.6-1 [365 kB] 126s Get:335 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-callr all 3.7.6-1 [458 kB] 126s Get:336 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 126s Get:337 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 126s Get:338 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgbuild all 1.4.6-1 [213 kB] 126s Get:339 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-rprojroot all 2.0.4-2 [125 kB] 126s Get:340 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-pkgload all 1.4.0-1 [247 kB] 126s Get:341 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 126s Get:342 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-waldo all 0.6.1-2 [150 kB] 126s Get:343 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-testthat amd64 3.2.3-1 [1651 kB] 127s Preconfiguring packages ... 127s Fetched 539 MB in 23s (23.1 MB/s) 127s Selecting previously unselected package libisl23:amd64. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 127s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 127s Unpacking libisl23:amd64 (0.27-1) ... 127s Selecting previously unselected package libmpc3:amd64. 127s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 127s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 127s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 127s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 127s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 128s Selecting previously unselected package cpp-14. 128s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 128s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 128s Selecting previously unselected package cpp-x86-64-linux-gnu. 128s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 128s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 128s Selecting previously unselected package cpp. 128s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 128s Unpacking cpp (4:14.2.0-1ubuntu1) ... 128s Selecting previously unselected package libcc1-0:amd64. 128s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_amd64.deb ... 128s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ... 128s Selecting previously unselected package libgomp1:amd64. 128s Preparing to unpack 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(5.0.10+really4.7.0~dfsg-4.1) ... 130s Selecting previously unselected package fonts-glyphicons-halflings. 130s Preparing to unpack .../033-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 130s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 130s Selecting previously unselected package fonts-lmodern. 130s Preparing to unpack .../034-fonts-lmodern_2.005-1_all.deb ... 130s Unpacking fonts-lmodern (2.005-1) ... 130s Selecting previously unselected package fonts-mathjax. 130s Preparing to unpack .../035-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 130s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 130s Selecting previously unselected package libgfortran5:amd64. 130s Preparing to unpack .../036-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 130s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 130s Selecting previously unselected package libgfortran-14-dev:amd64. 130s Preparing to unpack .../037-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ... 130s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 130s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 130s Preparing to unpack .../038-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 130s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 131s Selecting previously unselected package gfortran-14. 131s Preparing to unpack .../039-gfortran-14_14.2.0-19ubuntu2_amd64.deb ... 131s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 131s Selecting previously unselected package gfortran-x86-64-linux-gnu. 131s Preparing to unpack .../040-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 131s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 131s Selecting previously unselected package gfortran. 131s Preparing to unpack .../041-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 131s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 131s Selecting previously unselected package icu-devtools. 131s Preparing to unpack .../042-icu-devtools_76.1-1ubuntu2_amd64.deb ... 131s Unpacking icu-devtools (76.1-1ubuntu2) ... 131s Selecting previously unselected package javascript-common. 131s Preparing to unpack .../043-javascript-common_12_all.deb ... 131s Unpacking javascript-common (12) ... 131s Selecting previously unselected package libio-string-perl. 131s Preparing to unpack .../044-libio-string-perl_1.08-4_all.deb ... 131s Unpacking libio-string-perl (1.08-4) ... 131s Selecting previously unselected package liblatex-tounicode-perl. 131s Preparing to unpack .../045-liblatex-tounicode-perl_0.55-1_all.deb ... 131s Unpacking liblatex-tounicode-perl (0.55-1) ... 131s Selecting previously unselected package libbibtex-parser-perl. 131s Preparing to unpack .../046-libbibtex-parser-perl_1.05+dfsg-1_all.deb ... 131s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ... 131s Selecting previously unselected package libblas3:amd64. 131s Preparing to unpack .../047-libblas3_3.12.1-2_amd64.deb ... 131s Unpacking libblas3:amd64 (3.12.1-2) ... 131s Selecting previously unselected package libblas-dev:amd64. 131s Preparing to unpack .../048-libblas-dev_3.12.1-2_amd64.deb ... 131s Unpacking libblas-dev:amd64 (3.12.1-2) ... 131s Selecting previously unselected package libboost1.83-dev:amd64. 131s Preparing to unpack .../049-libboost1.83-dev_1.83.0-4.2ubuntu1_amd64.deb ... 131s Unpacking libboost1.83-dev:amd64 (1.83.0-4.2ubuntu1) ... 133s Selecting previously unselected package libboost-dev:amd64. 133s Preparing to unpack .../050-libboost-dev_1.83.0.2ubuntu1_amd64.deb ... 133s Unpacking libboost-dev:amd64 (1.83.0.2ubuntu1) ... 133s Selecting previously unselected package libbz2-dev:amd64. 133s Preparing to unpack .../051-libbz2-dev_1.0.8-6_amd64.deb ... 133s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 133s Selecting previously unselected package libpixman-1-0:amd64. 133s Preparing to unpack .../052-libpixman-1-0_0.44.0-3_amd64.deb ... 133s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 133s Selecting previously unselected package libxcb-render0:amd64. 133s Preparing to unpack .../053-libxcb-render0_1.17.0-2_amd64.deb ... 133s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 133s Selecting previously unselected package libxcb-shm0:amd64. 133s Preparing to unpack .../054-libxcb-shm0_1.17.0-2_amd64.deb ... 133s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 133s Selecting previously unselected package libxrender1:amd64. 133s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 133s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 133s Selecting previously unselected package libcairo2:amd64. 133s Preparing to unpack .../056-libcairo2_1.18.4-1_amd64.deb ... 133s Unpacking libcairo2:amd64 (1.18.4-1) ... 134s Selecting previously unselected package libdatrie1:amd64. 134s Preparing to unpack .../057-libdatrie1_0.2.13-3build1_amd64.deb ... 134s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 134s Selecting previously unselected package libdeflate0:amd64. 134s Preparing to unpack .../058-libdeflate0_1.23-2_amd64.deb ... 134s Unpacking libdeflate0:amd64 (1.23-2) ... 134s Selecting previously unselected package libdeflate-dev:amd64. 134s Preparing to unpack .../059-libdeflate-dev_1.23-2_amd64.deb ... 134s Unpacking libdeflate-dev:amd64 (1.23-2) ... 134s Selecting previously unselected package libgraphite2-3:amd64. 134s Preparing to unpack .../060-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 134s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 134s Selecting previously unselected package libharfbuzz0b:amd64. 134s Preparing to unpack .../061-libharfbuzz0b_10.2.0-1_amd64.deb ... 134s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 134s Selecting previously unselected package x11-common. 134s Preparing to unpack .../062-x11-common_1%3a7.7+23ubuntu4_all.deb ... 134s Unpacking x11-common (1:7.7+23ubuntu4) ... 134s Selecting previously unselected package libice6:amd64. 134s Preparing to unpack .../063-libice6_2%3a1.1.1-1_amd64.deb ... 134s Unpacking libice6:amd64 (2:1.1.1-1) ... 134s Selecting previously unselected package libicu-dev:amd64. 134s Preparing to unpack .../064-libicu-dev_76.1-1ubuntu2_amd64.deb ... 134s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 134s Selecting previously unselected package libjpeg-turbo8:amd64. 134s Preparing to unpack .../065-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 134s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 134s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 134s Preparing to unpack .../066-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 134s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 134s Selecting previously unselected package libjpeg8:amd64. 134s Preparing to unpack .../067-libjpeg8_8c-2ubuntu11_amd64.deb ... 134s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 134s Selecting previously unselected package libjpeg8-dev:amd64. 134s Preparing to unpack .../068-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 134s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 134s Selecting previously unselected package libjpeg-dev:amd64. 134s Preparing to unpack .../069-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 134s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 134s Selecting previously unselected package libjs-bootstrap. 134s Preparing to unpack .../070-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 134s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 134s Selecting previously unselected package libjs-popper.js. 134s Preparing to unpack .../071-libjs-popper.js_1.16.1+ds-6_all.deb ... 134s Unpacking libjs-popper.js (1.16.1+ds-6) ... 134s Selecting previously unselected package libjs-bootstrap4. 134s Preparing to unpack .../072-libjs-bootstrap4_4.6.1+dfsg1-5_all.deb ... 134s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-5) ... 135s Selecting previously unselected package libjs-d3. 135s Preparing to unpack .../073-libjs-d3_3.5.17-4_all.deb ... 135s Unpacking libjs-d3 (3.5.17-4) ... 135s Selecting previously unselected package libjs-es5-shim. 135s Preparing to unpack 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.../084-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 135s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 135s Selecting previously unselected package libkpathsea6:amd64. 135s Preparing to unpack .../085-libkpathsea6_2024.20240313.70630+ds-6_amd64.deb ... 135s Unpacking libkpathsea6:amd64 (2024.20240313.70630+ds-6) ... 135s Selecting previously unselected package liblapack3:amd64. 135s Preparing to unpack .../086-liblapack3_3.12.1-2_amd64.deb ... 135s Unpacking liblapack3:amd64 (3.12.1-2) ... 135s Selecting previously unselected package liblapack-dev:amd64. 135s Preparing to unpack .../087-liblapack-dev_3.12.1-2_amd64.deb ... 135s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 135s Selecting previously unselected package liblerc4:amd64. 135s Preparing to unpack .../088-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 135s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 135s Selecting previously unselected package liblua5.4-0:amd64. 135s Preparing to unpack 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libpango-1.0-0:amd64 (1.56.3-1) ... 136s Selecting previously unselected package libpangoft2-1.0-0:amd64. 136s Preparing to unpack .../095-libpangoft2-1.0-0_1.56.3-1_amd64.deb ... 136s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ... 136s Selecting previously unselected package libpangocairo-1.0-0:amd64. 136s Preparing to unpack .../096-libpangocairo-1.0-0_1.56.3-1_amd64.deb ... 136s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ... 136s Selecting previously unselected package libpaper2:amd64. 136s Preparing to unpack .../097-libpaper2_2.2.5-0.3_amd64.deb ... 136s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 136s Selecting previously unselected package libpaper-utils. 136s Preparing to unpack .../098-libpaper-utils_2.2.5-0.3_amd64.deb ... 136s Unpacking libpaper-utils (2.2.5-0.3) ... 136s Selecting previously unselected package libpcre2-16-0:amd64. 136s Preparing to unpack .../099-libpcre2-16-0_10.45-1_amd64.deb ... 136s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 136s Selecting previously unselected package libpcre2-32-0:amd64. 136s Preparing to unpack .../100-libpcre2-32-0_10.45-1_amd64.deb ... 136s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 136s Selecting previously unselected package libpcre2-posix3:amd64. 136s Preparing to unpack .../101-libpcre2-posix3_10.45-1_amd64.deb ... 136s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 136s Selecting previously unselected package libpcre2-dev:amd64. 136s Preparing to unpack .../102-libpcre2-dev_10.45-1_amd64.deb ... 136s Unpacking libpcre2-dev:amd64 (10.45-1) ... 136s Selecting previously unselected package libpkgconf3:amd64. 136s Preparing to unpack .../103-libpkgconf3_1.8.1-4_amd64.deb ... 136s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 136s Selecting previously unselected package zlib1g-dev:amd64. 136s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 136s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 136s Selecting previously unselected package libpng-dev:amd64. 136s Preparing to unpack .../105-libpng-dev_1.6.47-1.1_amd64.deb ... 136s Unpacking libpng-dev:amd64 (1.6.47-1.1) ... 136s Selecting previously unselected package libpotrace0:amd64. 136s Preparing to unpack .../106-libpotrace0_1.16-2build1_amd64.deb ... 136s Unpacking libpotrace0:amd64 (1.16-2build1) ... 136s Selecting previously unselected package libptexenc1:amd64. 136s Preparing to unpack .../107-libptexenc1_2024.20240313.70630+ds-6_amd64.deb ... 136s Unpacking libptexenc1:amd64 (2024.20240313.70630+ds-6) ... 136s Selecting previously unselected package libreadline-dev:amd64. 136s Preparing to unpack .../108-libreadline-dev_8.2-6_amd64.deb ... 136s Unpacking libreadline-dev:amd64 (8.2-6) ... 136s Selecting previously unselected package libsharpyuv0:amd64. 136s Preparing to unpack .../109-libsharpyuv0_1.5.0-0.1_amd64.deb ... 136s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 136s Selecting previously unselected package libsm6:amd64. 136s Preparing to unpack .../110-libsm6_2%3a1.2.4-1_amd64.deb ... 136s Unpacking libsm6:amd64 (2:1.2.4-1) ... 136s Selecting previously unselected package libsynctex2:amd64. 136s Preparing to unpack .../111-libsynctex2_2024.20240313.70630+ds-6_amd64.deb ... 136s Unpacking libsynctex2:amd64 (2024.20240313.70630+ds-6) ... 136s Selecting previously unselected package libtcl8.6:amd64. 136s Preparing to unpack .../112-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 136s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 136s Selecting previously unselected package libteckit0:amd64. 136s Preparing to unpack .../113-libteckit0_2.5.12+ds1-1_amd64.deb ... 136s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 136s Selecting previously unselected package libtexlua53-5:amd64. 136s Preparing to unpack .../114-libtexlua53-5_2024.20240313.70630+ds-6_amd64.deb ... 136s Unpacking libtexlua53-5:amd64 (2024.20240313.70630+ds-6) ... 137s Selecting previously unselected package libjbig0:amd64. 137s Preparing to unpack .../115-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 137s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 137s Selecting previously unselected package libwebp7:amd64. 137s Preparing to unpack .../116-libwebp7_1.5.0-0.1_amd64.deb ... 137s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 137s Selecting previously unselected package libtiff6:amd64. 137s Preparing to unpack .../117-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 137s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 137s Selecting previously unselected package libxft2:amd64. 137s Preparing to unpack .../118-libxft2_2.3.6-1build1_amd64.deb ... 137s Unpacking libxft2:amd64 (2.3.6-1build1) ... 137s Selecting previously unselected package libxss1:amd64. 137s Preparing to unpack .../119-libxss1_1%3a1.2.3-1build3_amd64.deb ... 137s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 137s Selecting previously unselected package libtk8.6:amd64. 137s Preparing to unpack .../120-libtk8.6_8.6.16-1_amd64.deb ... 137s Unpacking libtk8.6:amd64 (8.6.16-1) ... 137s Selecting previously unselected package libxt6t64:amd64. 137s Preparing to unpack .../121-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 137s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 137s Selecting previously unselected package libxmu6:amd64. 137s Preparing to unpack .../122-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 137s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 137s Selecting previously unselected package libxpm4:amd64. 137s Preparing to unpack .../123-libxpm4_1%3a3.5.17-1build2_amd64.deb ... 137s Unpacking libxpm4:amd64 (1:3.5.17-1build2) ... 137s Selecting previously unselected package libxaw7:amd64. 137s Preparing to unpack .../124-libxaw7_2%3a1.0.16-1_amd64.deb ... 137s Unpacking libxaw7:amd64 (2:1.0.16-1) ... 137s Selecting previously unselected package libxi6:amd64. 137s Preparing to unpack .../125-libxi6_2%3a1.8.2-1_amd64.deb ... 137s Unpacking libxi6:amd64 (2:1.8.2-1) ... 137s Selecting previously unselected package libzstd-dev:amd64. 137s Preparing to unpack .../126-libzstd-dev_1.5.6+dfsg-2_amd64.deb ... 137s Unpacking libzstd-dev:amd64 (1.5.6+dfsg-2) ... 137s Selecting previously unselected package libzzip-0-13t64:amd64. 137s Preparing to unpack .../127-libzzip-0-13t64_0.13.78+dfsg.1-0.1_amd64.deb ... 137s Unpacking libzzip-0-13t64:amd64 (0.13.78+dfsg.1-0.1) ... 137s Selecting previously unselected package zip. 137s Preparing to unpack .../128-zip_3.0-14ubuntu2_amd64.deb ... 137s Unpacking zip (3.0-14ubuntu2) ... 137s Selecting previously unselected package unzip. 137s Preparing to unpack .../129-unzip_6.0-28ubuntu6_amd64.deb ... 137s Unpacking unzip (6.0-28ubuntu6) ... 137s Selecting previously unselected package xdg-utils. 137s Preparing to unpack .../130-xdg-utils_1.2.1-2ubuntu1_all.deb ... 137s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 137s Selecting previously unselected package r-base-core. 137s Preparing to unpack .../131-r-base-core_4.5.0-3_amd64.deb ... 137s Unpacking r-base-core (4.5.0-3) ... 138s Selecting previously unselected package r-cran-littler. 138s Preparing to unpack .../132-r-cran-littler_0.3.20-2_amd64.deb ... 138s Unpacking r-cran-littler (0.3.20-2) ... 138s Selecting previously unselected package littler. 138s Preparing to unpack .../133-littler_0.3.20-2_all.deb ... 138s Unpacking littler (0.3.20-2) ... 138s Selecting previously unselected package node-bootstrap-sass. 138s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 138s Unpacking node-bootstrap-sass (3.4.3-2) ... 138s Selecting previously unselected package node-html5shiv. 138s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 138s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 138s Selecting previously unselected package node-normalize.css. 138s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 138s Unpacking node-normalize.css (8.0.1-5) ... 138s Selecting previously unselected package pandoc-data. 138s Preparing to unpack .../137-pandoc-data_3.1.11.1-3build1_all.deb ... 138s Unpacking pandoc-data (3.1.11.1-3build1) ... 138s Selecting previously unselected package pandoc. 138s Preparing to unpack .../138-pandoc_3.1.11.1+ds-2_amd64.deb ... 138s Unpacking pandoc (3.1.11.1+ds-2) ... 139s Selecting previously unselected package liblzma-dev:amd64. 139s Preparing to unpack .../139-liblzma-dev_5.6.4-1ubuntu1_amd64.deb ... 139s Unpacking liblzma-dev:amd64 (5.6.4-1ubuntu1) ... 139s Selecting previously unselected package pkgconf-bin. 139s Preparing to unpack .../140-pkgconf-bin_1.8.1-4_amd64.deb ... 139s Unpacking pkgconf-bin (1.8.1-4) ... 139s Selecting previously unselected package pkgconf:amd64. 139s Preparing to unpack .../141-pkgconf_1.8.1-4_amd64.deb ... 139s Unpacking pkgconf:amd64 (1.8.1-4) ... 139s Selecting previously unselected package libtirpc-dev:amd64. 139s Preparing to unpack .../142-libtirpc-dev_1.3.4+ds-1.3_amd64.deb ... 139s Unpacking libtirpc-dev:amd64 (1.3.4+ds-1.3) ... 139s Selecting previously unselected package r-base-dev. 139s Preparing to unpack .../143-r-base-dev_4.5.0-3_all.deb ... 139s Unpacking r-base-dev (4.5.0-3) ... 139s Selecting previously unselected package pkg-r-autopkgtest. 139s Preparing to unpack .../144-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 139s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 139s Selecting previously unselected package r-bioc-biocgenerics. 139s Preparing to unpack .../145-r-bioc-biocgenerics_0.52.0-2_all.deb ... 139s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 139s Selecting previously unselected package r-bioc-biobase. 139s Preparing to unpack .../146-r-bioc-biobase_2.66.0-2_amd64.deb ... 139s Unpacking r-bioc-biobase (2.66.0-2) ... 139s Selecting previously unselected package r-bioc-s4vectors. 139s Preparing to unpack .../147-r-bioc-s4vectors_0.44.0+dfsg-2_amd64.deb ... 139s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 139s Selecting previously unselected package r-bioc-iranges. 139s Preparing to unpack .../148-r-bioc-iranges_2.40.1-3_amd64.deb ... 139s Unpacking r-bioc-iranges (2.40.1-3) ... 139s Selecting previously unselected package r-cran-dbi. 139s Preparing to unpack .../149-r-cran-dbi_1.2.3-1_all.deb ... 139s Unpacking r-cran-dbi (1.2.3-1) ... 139s Selecting previously unselected package r-cran-bit. 139s Preparing to unpack .../150-r-cran-bit_4.6.0+dfsg-1_amd64.deb ... 139s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-bit64. 140s Preparing to unpack .../151-r-cran-bit64_4.6.0-1-1ubuntu2_amd64.deb ... 140s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 140s Selecting previously unselected package r-cran-rlang. 140s Preparing to unpack .../152-r-cran-rlang_1.1.5-3_amd64.deb ... 140s Unpacking r-cran-rlang (1.1.5-3) ... 140s Selecting previously unselected package r-cran-cli. 140s Preparing to unpack .../153-r-cran-cli_3.6.4-1_amd64.deb ... 140s Unpacking r-cran-cli (3.6.4-1) ... 140s Selecting previously unselected package r-cran-glue. 140s Preparing to unpack .../154-r-cran-glue_1.8.0-1_amd64.deb ... 140s Unpacking r-cran-glue (1.8.0-1) ... 140s Selecting previously unselected package r-cran-lifecycle. 140s Preparing to unpack .../155-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 140s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 140s Selecting previously unselected package r-cran-vctrs. 140s Preparing to unpack .../156-r-cran-vctrs_0.6.5-1_amd64.deb ... 140s Unpacking r-cran-vctrs (0.6.5-1) ... 140s Selecting previously unselected package r-cran-blob. 140s Preparing to unpack .../157-r-cran-blob_1.2.4-1_all.deb ... 140s Unpacking r-cran-blob (1.2.4-1) ... 140s Selecting previously unselected package r-cran-fastmap. 140s Preparing to unpack .../158-r-cran-fastmap_1.2.0-1_amd64.deb ... 140s Unpacking r-cran-fastmap (1.2.0-1) ... 140s Selecting previously unselected package r-cran-cachem. 140s Preparing to unpack .../159-r-cran-cachem_1.1.0-1_amd64.deb ... 140s Unpacking r-cran-cachem (1.1.0-1) ... 140s Selecting previously unselected package r-cran-memoise. 140s Preparing to unpack .../160-r-cran-memoise_2.0.1-1_all.deb ... 140s Unpacking r-cran-memoise (2.0.1-1) ... 140s Selecting previously unselected package r-cran-pkgconfig. 140s Preparing to unpack .../161-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 140s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 140s Selecting previously unselected package r-cran-plogr. 140s Preparing to unpack .../162-r-cran-plogr_0.2.0-3build1_all.deb ... 140s Unpacking r-cran-plogr (0.2.0-3build1) ... 140s Selecting previously unselected package r-cran-cpp11. 140s Preparing to unpack .../163-r-cran-cpp11_0.5.2-1_all.deb ... 140s Unpacking r-cran-cpp11 (0.5.2-1) ... 140s Selecting previously unselected package r-cran-rsqlite. 140s Preparing to unpack .../164-r-cran-rsqlite_2.3.9-1_amd64.deb ... 140s Unpacking r-cran-rsqlite (2.3.9-1) ... 140s Selecting previously unselected package r-cran-curl. 140s Preparing to unpack .../165-r-cran-curl_6.2.1+dfsg-1ubuntu1_amd64.deb ... 140s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 140s Selecting previously unselected package r-cran-jsonlite. 140s Preparing to unpack .../166-r-cran-jsonlite_1.9.1+dfsg-1_amd64.deb ... 140s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 140s Selecting previously unselected package r-cran-mime. 140s Preparing to unpack .../167-r-cran-mime_0.12-2_amd64.deb ... 140s Unpacking r-cran-mime (0.12-2) ... 140s Selecting previously unselected package r-cran-sys. 140s Preparing to unpack .../168-r-cran-sys_3.4.3-1_amd64.deb ... 140s Unpacking r-cran-sys (3.4.3-1) ... 140s Selecting previously unselected package r-cran-askpass. 140s Preparing to unpack .../169-r-cran-askpass_1.2.1-1_amd64.deb ... 140s Unpacking r-cran-askpass (1.2.1-1) ... 140s Selecting previously unselected package r-cran-openssl. 140s Preparing to unpack .../170-r-cran-openssl_2.3.2+dfsg-1_amd64.deb ... 140s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 141s Selecting previously unselected package r-cran-r6. 141s Preparing to unpack .../171-r-cran-r6_2.6.1-1_all.deb ... 141s Unpacking r-cran-r6 (2.6.1-1) ... 141s Selecting previously unselected package r-cran-httr. 141s Preparing to unpack .../172-r-cran-httr_1.4.7+dfsg-1_all.deb ... 141s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 141s Selecting previously unselected package r-cran-png. 141s Preparing to unpack .../173-r-cran-png_0.1-8-1build2_amd64.deb ... 141s Unpacking r-cran-png (0.1-8-1build2) ... 141s Selecting previously unselected package r-bioc-zlibbioc. 141s Preparing to unpack .../174-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 141s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 141s Selecting previously unselected package r-bioc-xvector. 141s Preparing to unpack .../175-r-bioc-xvector_0.46.0-2_amd64.deb ... 141s Unpacking r-bioc-xvector (0.46.0-2) ... 141s Selecting previously unselected package r-bioc-ucsc.utils. 141s Preparing to unpack .../176-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 141s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 141s Selecting previously unselected package r-bioc-genomeinfodbdata. 141s Preparing to unpack .../177-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 141s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 141s Selecting previously unselected package r-bioc-genomeinfodb. 141s Preparing to unpack .../178-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 141s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 141s Selecting previously unselected package r-cran-crayon. 141s Preparing to unpack .../179-r-cran-crayon_1.5.3-1_all.deb ... 141s Unpacking r-cran-crayon (1.5.3-1) ... 141s Selecting previously unselected package r-bioc-biostrings. 141s Preparing to unpack .../180-r-bioc-biostrings_2.74.1+dfsg-2_amd64.deb ... 141s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 141s Selecting previously unselected package r-bioc-keggrest. 141s Preparing to unpack .../181-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 141s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 141s Selecting previously unselected package r-bioc-annotationdbi. 141s Preparing to unpack .../182-r-bioc-annotationdbi_1.68.0-2_all.deb ... 141s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 141s Selecting previously unselected package r-cran-xml. 141s Preparing to unpack .../183-r-cran-xml_3.99-0.18-1_amd64.deb ... 141s Unpacking r-cran-xml (3.99-0.18-1) ... 141s Selecting previously unselected package r-cran-xtable. 141s Preparing to unpack .../184-r-cran-xtable_1%3a1.8-4-2_all.deb ... 141s Unpacking r-cran-xtable (1:1.8-4-2) ... 141s Selecting previously unselected package r-bioc-annotate. 141s Preparing to unpack .../185-r-bioc-annotate_1.84.0+dfsg-2_all.deb ... 141s Unpacking r-bioc-annotate (1.84.0+dfsg-2) ... 141s Selecting previously unselected package r-bioc-genomicranges. 141s Preparing to unpack .../186-r-bioc-genomicranges_1.58.0+dfsg-2_amd64.deb ... 141s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 141s Selecting previously unselected package r-cran-lazyeval. 141s Preparing to unpack .../187-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 141s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 142s Selecting previously unselected package r-bioc-annotationfilter. 142s Preparing to unpack .../188-r-bioc-annotationfilter_1.30.0+dfsg-2_all.deb ... 142s Unpacking r-bioc-annotationfilter (1.30.0+dfsg-2) ... 142s Selecting previously unselected package r-cran-generics. 142s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 142s Unpacking r-cran-generics (0.1.3-1) ... 142s Selecting previously unselected package r-cran-magrittr. 142s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_amd64.deb ... 142s Unpacking r-cran-magrittr (2.0.3-1) ... 142s Selecting previously unselected package r-cran-utf8. 142s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_amd64.deb ... 142s Unpacking r-cran-utf8 (1.2.4-1) ... 142s Selecting previously unselected package r-cran-pillar. 142s Preparing to unpack .../192-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 142s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 142s Selecting previously unselected package r-cran-fansi. 142s Preparing to unpack .../193-r-cran-fansi_1.0.6-1ubuntu1_amd64.deb ... 142s Unpacking r-cran-fansi (1.0.6-1ubuntu1) ... 142s Selecting previously unselected package r-cran-tibble. 142s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-3_amd64.deb ... 142s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 142s Selecting previously unselected package r-cran-withr. 142s Preparing to unpack .../195-r-cran-withr_3.0.2+dfsg-1_all.deb ... 142s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 142s Selecting previously unselected package r-cran-tidyselect. 142s Preparing to unpack .../196-r-cran-tidyselect_1.2.1+dfsg-1_amd64.deb ... 142s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 142s Selecting previously unselected package r-cran-dplyr. 142s Preparing to unpack .../197-r-cran-dplyr_1.1.4-4_amd64.deb ... 142s Unpacking r-cran-dplyr (1.1.4-4) ... 142s Selecting previously unselected package r-cran-purrr. 142s Preparing to unpack .../198-r-cran-purrr_1.0.4-1_amd64.deb ... 142s Unpacking r-cran-purrr (1.0.4-1) ... 142s Selecting previously unselected package r-cran-stringi. 142s Preparing to unpack .../199-r-cran-stringi_1.8.4-1build1_amd64.deb ... 142s Unpacking r-cran-stringi (1.8.4-1build1) ... 142s Selecting previously unselected package r-cran-stringr. 142s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 142s Unpacking r-cran-stringr (1.5.1-1) ... 142s Selecting previously unselected package r-cran-tidyr. 142s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_amd64.deb ... 142s Unpacking r-cran-tidyr (1.3.1-1) ... 142s Selecting previously unselected package r-cran-dbplyr. 142s Preparing to unpack .../202-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ... 142s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-filelock. 142s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_amd64.deb ... 142s Unpacking r-cran-filelock (1.0.3-1) ... 142s Selecting previously unselected package r-bioc-biocfilecache. 142s Preparing to unpack .../204-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ... 142s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ... 142s Selecting previously unselected package r-bioc-biocio. 142s Preparing to unpack .../205-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 142s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 142s Selecting previously unselected package r-cran-formatr. 142s Preparing to unpack .../206-r-cran-formatr_1.14-2_all.deb ... 142s Unpacking r-cran-formatr (1.14-2) ... 142s Selecting previously unselected package r-cran-lambda.r. 142s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 142s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 142s Selecting previously unselected package r-cran-futile.options. 142s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 142s Unpacking r-cran-futile.options (1.0.1-3build1) ... 142s Selecting previously unselected package r-cran-futile.logger. 142s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 142s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 143s Selecting previously unselected package r-cran-snow. 143s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 143s Unpacking r-cran-snow (1:0.4.4-2) ... 143s Selecting previously unselected package r-cran-codetools. 143s Preparing to unpack .../211-r-cran-codetools_0.2-20-1_all.deb ... 143s Unpacking r-cran-codetools (0.2-20-1) ... 143s Selecting previously unselected package r-cran-bh. 143s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 143s Unpacking r-cran-bh (1.84.0-1) ... 143s Selecting previously unselected package r-bioc-biocparallel. 143s Preparing to unpack .../213-r-bioc-biocparallel_1.40.0-2_amd64.deb ... 143s Unpacking r-bioc-biocparallel (1.40.0-2) ... 143s Selecting previously unselected package r-cran-base64enc. 143s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_amd64.deb ... 143s Unpacking r-cran-base64enc (0.1-3-3) ... 143s Selecting previously unselected package r-cran-digest. 143s Preparing to unpack .../215-r-cran-digest_0.6.37-1_amd64.deb ... 143s Unpacking r-cran-digest (0.6.37-1) ... 143s Selecting previously unselected package r-cran-htmltools. 143s Preparing to unpack .../216-r-cran-htmltools_0.5.8.1-1_amd64.deb ... 143s Unpacking r-cran-htmltools (0.5.8.1-1) ... 143s Selecting previously unselected package r-cran-evaluate. 143s Preparing to unpack .../217-r-cran-evaluate_1.0.3-1_all.deb ... 143s Unpacking r-cran-evaluate (1.0.3-1) ... 143s Selecting previously unselected package r-cran-xfun. 143s Preparing to unpack .../218-r-cran-xfun_0.51+dfsg-1_amd64.deb ... 143s Unpacking r-cran-xfun (0.51+dfsg-1) ... 143s Selecting previously unselected package r-cran-highr. 143s Preparing to unpack .../219-r-cran-highr_0.11+dfsg-1_all.deb ... 143s Unpacking r-cran-highr (0.11+dfsg-1) ... 143s Selecting previously unselected package r-cran-yaml. 143s Preparing to unpack .../220-r-cran-yaml_2.3.10-1_amd64.deb ... 143s Unpacking r-cran-yaml (2.3.10-1) ... 143s Selecting previously unselected package libjs-mathjax. 143s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 143s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 144s Selecting previously unselected package r-cran-knitr. 144s Preparing to unpack .../222-r-cran-knitr_1.50+dfsg-1_all.deb ... 144s Unpacking r-cran-knitr (1.50+dfsg-1) ... 144s Selecting previously unselected package r-cran-jquerylib. 144s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 144s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 144s Selecting previously unselected package r-cran-fs. 144s Preparing to unpack .../224-r-cran-fs_1.6.5+dfsg-1_amd64.deb ... 144s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 144s Selecting previously unselected package r-cran-rappdirs. 144s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1_amd64.deb ... 144s Unpacking r-cran-rappdirs (0.3.3-1) ... 144s Selecting previously unselected package r-cran-sass. 144s Preparing to unpack .../226-r-cran-sass_0.4.9+dfsg-1_amd64.deb ... 144s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 144s Selecting previously unselected package r-cran-bslib. 144s Preparing to unpack .../227-r-cran-bslib_0.9.0+dfsg-1syncable1_all.deb ... 144s Unpacking r-cran-bslib (0.9.0+dfsg-1syncable1) ... 144s Selecting previously unselected package r-cran-fontawesome. 144s Preparing to unpack .../228-r-cran-fontawesome_0.5.3-1_all.deb ... 144s Unpacking r-cran-fontawesome (0.5.3-1) ... 144s Selecting previously unselected package r-cran-tinytex. 144s Preparing to unpack .../229-r-cran-tinytex_0.56-1_all.deb ... 144s Unpacking r-cran-tinytex (0.56-1) ... 144s Selecting previously unselected package libjs-modernizr. 144s Preparing to unpack .../230-libjs-modernizr_3.13.0-0.1_all.deb ... 144s Unpacking libjs-modernizr (3.13.0-0.1) ... 144s Selecting previously unselected package r-cran-pkgkitten. 144s Preparing to unpack .../231-r-cran-pkgkitten_0.2.4-1_all.deb ... 144s Unpacking r-cran-pkgkitten (0.2.4-1) ... 144s Selecting previously unselected package r-cran-rcpp. 144s Preparing to unpack .../232-r-cran-rcpp_1.0.14-1_amd64.deb ... 144s Unpacking r-cran-rcpp (1.0.14-1) ... 145s Selecting previously unselected package r-cran-later. 145s Preparing to unpack .../233-r-cran-later_1.4.1+dfsg-1_amd64.deb ... 145s Unpacking r-cran-later (1.4.1+dfsg-1) ... 145s Selecting previously unselected package r-cran-promises. 145s Preparing to unpack .../234-r-cran-promises_1.3.2+dfsg-1_amd64.deb ... 145s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 145s Selecting previously unselected package r-cran-httpuv. 145s Preparing to unpack .../235-r-cran-httpuv_1.6.15+dfsg-1_amd64.deb ... 145s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 145s Selecting previously unselected package r-cran-sourcetools. 145s Preparing to unpack .../236-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 145s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 145s Selecting previously unselected package r-cran-commonmark. 145s Preparing to unpack .../237-r-cran-commonmark_1.9.5-1_amd64.deb ... 145s Unpacking r-cran-commonmark (1.9.5-1) ... 145s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 145s Preparing to unpack .../238-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 145s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 145s Selecting previously unselected package r-cran-shiny. 145s Preparing to unpack .../239-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 145s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 145s Selecting previously unselected package r-cran-rmarkdown. 145s Preparing to unpack .../240-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 145s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 145s Selecting previously unselected package r-cran-bookdown. 145s Preparing to unpack .../241-r-cran-bookdown_0.42+dfsg-1_all.deb ... 145s Unpacking r-cran-bookdown (0.42+dfsg-1) ... 145s Selecting previously unselected package r-cran-biocmanager. 145s Preparing to unpack .../242-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 145s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 145s Selecting previously unselected package tex-common. 145s Preparing to unpack .../243-tex-common_6.19_all.deb ... 145s Unpacking tex-common (6.19) ... 145s Selecting previously unselected package t1utils. 145s Preparing to unpack .../244-t1utils_1.41-4build3_amd64.deb ... 145s Unpacking t1utils (1.41-4build3) ... 145s Selecting previously unselected package texlive-binaries. 145s Preparing to unpack .../245-texlive-binaries_2024.20240313.70630+ds-6_amd64.deb ... 145s Unpacking texlive-binaries (2024.20240313.70630+ds-6) ... 146s Selecting previously unselected package texlive-base. 146s Preparing to unpack .../246-texlive-base_2024.20250309-1_all.deb ... 146s Unpacking texlive-base (2024.20250309-1) ... 147s Selecting previously unselected package texlive-latex-base. 147s Preparing to unpack .../247-texlive-latex-base_2024.20250309-1_all.deb ... 147s Unpacking texlive-latex-base (2024.20250309-1) ... 147s Selecting previously unselected package texlive-bibtex-extra. 147s Preparing to unpack .../248-texlive-bibtex-extra_2024.20250309-2_all.deb ... 147s Unpacking texlive-bibtex-extra (2024.20250309-2) ... 149s Selecting previously unselected package r-bioc-biocversion. 149s Preparing to unpack .../249-r-bioc-biocversion_3.20.0-2_all.deb ... 149s Unpacking r-bioc-biocversion (3.20.0-2) ... 149s Selecting previously unselected package r-bioc-biocstyle. 149s Preparing to unpack .../250-r-bioc-biocstyle_2.34.0+dfsg-1_all.deb ... 149s Unpacking r-bioc-biocstyle (2.34.0+dfsg-1) ... 149s Selecting previously unselected package r-cran-hms. 149s Preparing to unpack .../251-r-cran-hms_1.1.3-1_all.deb ... 149s Unpacking r-cran-hms (1.1.3-1) ... 149s Selecting previously unselected package r-cran-prettyunits. 149s Preparing to unpack .../252-r-cran-prettyunits_1.2.0-1_all.deb ... 149s Unpacking r-cran-prettyunits (1.2.0-1) ... 149s Selecting previously unselected package r-cran-progress. 149s Preparing to unpack .../253-r-cran-progress_1.2.3-1_all.deb ... 149s Unpacking r-cran-progress (1.2.3-1) ... 149s Selecting previously unselected package r-cran-httr2. 149s Preparing to unpack .../254-r-cran-httr2_1.1.1-1_all.deb ... 149s Unpacking r-cran-httr2 (1.1.1-1) ... 149s Selecting previously unselected package r-cran-xml2. 149s Preparing to unpack .../255-r-cran-xml2_1.3.8-1_amd64.deb ... 149s Unpacking r-cran-xml2 (1.3.8-1) ... 149s Selecting previously unselected package r-bioc-biomart. 149s Preparing to unpack .../256-r-bioc-biomart_2.62.1+dfsg-1_all.deb ... 149s Unpacking r-bioc-biomart (2.62.1+dfsg-1) ... 150s Selecting previously unselected package r-cran-farver. 150s Preparing to unpack .../257-r-cran-farver_2.1.2-1_amd64.deb ... 150s Unpacking r-cran-farver (2.1.2-1) ... 150s Selecting previously unselected package r-cran-labeling. 150s Preparing to unpack .../258-r-cran-labeling_0.4.3-1_all.deb ... 150s Unpacking r-cran-labeling (0.4.3-1) ... 150s Selecting previously unselected package r-cran-colorspace. 150s Preparing to unpack .../259-r-cran-colorspace_2.1-1+dfsg-1_amd64.deb ... 150s Unpacking r-cran-colorspace (2.1-1+dfsg-1) ... 150s Selecting previously unselected package r-cran-munsell. 150s Preparing to unpack .../260-r-cran-munsell_0.5.1-1_all.deb ... 150s Unpacking r-cran-munsell (0.5.1-1) ... 150s Selecting previously unselected package r-cran-rcolorbrewer. 150s Preparing to unpack .../261-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 150s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 150s Selecting previously unselected package r-cran-viridislite. 150s Preparing to unpack .../262-r-cran-viridislite_0.4.2-2_all.deb ... 150s Unpacking r-cran-viridislite (0.4.2-2) ... 150s Selecting previously unselected package r-cran-scales. 150s Preparing to unpack .../263-r-cran-scales_1.3.0-1_all.deb ... 150s Unpacking r-cran-scales (1.3.0-1) ... 150s Selecting previously unselected package r-cran-gtable. 150s Preparing to unpack .../264-r-cran-gtable_0.3.6+dfsg-1_all.deb ... 150s Unpacking r-cran-gtable (0.3.6+dfsg-1) ... 150s Selecting previously unselected package r-cran-isoband. 150s Preparing to unpack .../265-r-cran-isoband_0.2.7-1_amd64.deb ... 150s Unpacking r-cran-isoband (0.2.7-1) ... 150s Selecting previously unselected package r-cran-mass. 150s Preparing to unpack .../266-r-cran-mass_7.3-65-1_amd64.deb ... 150s Unpacking r-cran-mass (7.3-65-1) ... 150s Selecting previously unselected package r-cran-lattice. 150s Preparing to unpack .../267-r-cran-lattice_0.22-6-1_amd64.deb ... 150s Unpacking r-cran-lattice (0.22-6-1) ... 150s Selecting previously unselected package r-cran-nlme. 150s Preparing to unpack .../268-r-cran-nlme_3.1.167-1_amd64.deb ... 150s Unpacking r-cran-nlme (3.1.167-1) ... 150s Selecting previously unselected package r-cran-matrix. 150s Preparing to unpack .../269-r-cran-matrix_1.7-3-1_amd64.deb ... 150s Unpacking r-cran-matrix (1.7-3-1) ... 150s Selecting previously unselected package r-cran-mgcv. 150s Preparing to unpack .../270-r-cran-mgcv_1.9-1-1_amd64.deb ... 150s Unpacking r-cran-mgcv (1.9-1-1) ... 150s Selecting previously unselected package r-cran-ggplot2. 150s Preparing to unpack .../271-r-cran-ggplot2_3.5.1+dfsg-1_all.deb ... 150s Unpacking r-cran-ggplot2 (3.5.1+dfsg-1) ... 150s Selecting previously unselected package r-cran-cluster. 150s Preparing to unpack .../272-r-cran-cluster_2.1.8.1-1_amd64.deb ... 150s Unpacking r-cran-cluster (2.1.8.1-1) ... 150s Selecting previously unselected package r-cran-survival. 150s Preparing to unpack .../273-r-cran-survival_3.8-3-1_amd64.deb ... 150s Unpacking r-cran-survival (3.8-3-1) ... 151s Selecting previously unselected package r-cran-rpart. 151s Preparing to unpack .../274-r-cran-rpart_4.1.24-1_amd64.deb ... 151s Unpacking r-cran-rpart (4.1.24-1) ... 151s Selecting previously unselected package r-cran-nnet. 151s Preparing to unpack .../275-r-cran-nnet_7.3-20-1_amd64.deb ... 151s Unpacking r-cran-nnet (7.3-20-1) ... 151s Selecting previously unselected package r-cran-foreign. 151s Preparing to unpack .../276-r-cran-foreign_0.8.90-1_amd64.deb ... 151s Unpacking r-cran-foreign (0.8.90-1) ... 151s Selecting previously unselected package r-cran-gridextra. 151s Preparing to unpack .../277-r-cran-gridextra_2.3-3build1_all.deb ... 151s Unpacking r-cran-gridextra (2.3-3build1) ... 151s Selecting previously unselected package r-cran-data.table. 151s Preparing to unpack .../278-r-cran-data.table_1.17.0+dfsg-1_amd64.deb ... 151s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 151s Selecting previously unselected package r-cran-backports. 151s Preparing to unpack .../279-r-cran-backports_1.5.0-2_amd64.deb ... 151s Unpacking r-cran-backports (1.5.0-2) ... 151s Selecting previously unselected package r-cran-checkmate. 151s Preparing to unpack .../280-r-cran-checkmate_2.3.2-1_amd64.deb ... 151s Unpacking r-cran-checkmate (2.3.2-1) ... 151s Selecting previously unselected package r-cran-htmlwidgets. 151s Preparing to unpack .../281-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 151s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 151s Selecting previously unselected package r-cran-rstudioapi. 151s Preparing to unpack .../282-r-cran-rstudioapi_0.17.1-1_all.deb ... 151s Unpacking r-cran-rstudioapi (0.17.1-1) ... 151s Selecting previously unselected package r-cran-htmltable. 151s Preparing to unpack .../283-r-cran-htmltable_2.4.3-1_all.deb ... 151s Unpacking r-cran-htmltable (2.4.3-1) ... 151s Selecting previously unselected package r-cran-viridis. 151s Preparing to unpack .../284-r-cran-viridis_0.6.5-1_all.deb ... 151s Unpacking r-cran-viridis (0.6.5-1) ... 151s Selecting previously unselected package r-cran-formula. 151s Preparing to unpack .../285-r-cran-formula_1.2-5-1_all.deb ... 151s Unpacking r-cran-formula (1.2-5-1) ... 151s Selecting previously unselected package r-cran-chron. 151s Preparing to unpack .../286-r-cran-chron_2.3-62-1_amd64.deb ... 151s Unpacking r-cran-chron (2.3-62-1) ... 151s Selecting previously unselected package r-cran-jpeg. 151s Preparing to unpack .../287-r-cran-jpeg_0.1-10-1_amd64.deb ... 151s Unpacking r-cran-jpeg (0.1-10-1) ... 151s Selecting previously unselected package r-cran-deldir. 151s Preparing to unpack .../288-r-cran-deldir_2.0-4-1build1_amd64.deb ... 151s Unpacking r-cran-deldir (2.0-4-1build1) ... 151s Selecting previously unselected package r-cran-rcppeigen. 151s Preparing to unpack .../289-r-cran-rcppeigen_0.3.4.0.2-1_amd64.deb ... 151s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ... 152s Selecting previously unselected package r-cran-interp. 152s Preparing to unpack .../290-r-cran-interp_1.1-6-1_amd64.deb ... 152s Unpacking r-cran-interp (1.1-6-1) ... 152s Selecting previously unselected package r-cran-latticeextra. 152s Preparing to unpack .../291-r-cran-latticeextra_0.6-30-1_all.deb ... 152s Unpacking r-cran-latticeextra (0.6-30-1) ... 152s Selecting previously unselected package r-cran-acepack. 152s Preparing to unpack .../292-r-cran-acepack_1.6.1-1_amd64.deb ... 152s Unpacking r-cran-acepack (1.6.1-1) ... 152s Selecting previously unselected package r-cran-hmisc. 152s Preparing to unpack .../293-r-cran-hmisc_5.2-3-1_amd64.deb ... 152s Unpacking r-cran-hmisc (5.2-3-1) ... 152s Selecting previously unselected package r-cran-dichromat. 152s Preparing to unpack .../294-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 152s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 152s Selecting previously unselected package r-cran-matrixstats. 152s Preparing to unpack .../295-r-cran-matrixstats_1.5.0-1_amd64.deb ... 152s Unpacking r-cran-matrixstats (1.5.0-1) ... 152s Selecting previously unselected package r-bioc-matrixgenerics. 152s Preparing to unpack .../296-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 152s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 152s Selecting previously unselected package r-cran-abind. 152s Preparing to unpack .../297-r-cran-abind_1.4-8-1_all.deb ... 152s Unpacking r-cran-abind (1.4-8-1) ... 152s Selecting previously unselected package r-bioc-s4arrays. 152s Preparing to unpack .../298-r-bioc-s4arrays_1.6.0+dfsg-2_amd64.deb ... 152s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 152s Selecting previously unselected package r-bioc-sparsearray. 152s Preparing to unpack .../299-r-bioc-sparsearray_1.6.2+dfsg-1_amd64.deb ... 152s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 152s Selecting previously unselected package r-bioc-delayedarray. 152s Preparing to unpack .../300-r-bioc-delayedarray_0.32.0+dfsg-2_amd64.deb ... 152s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 152s Selecting previously unselected package r-bioc-summarizedexperiment. 152s Preparing to unpack .../301-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 152s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 152s Selecting previously unselected package r-cran-bitops. 152s Preparing to unpack .../302-r-cran-bitops_1.0-9-1_amd64.deb ... 152s Unpacking r-cran-bitops (1.0-9-1) ... 152s Selecting previously unselected package r-bioc-rhtslib. 152s Preparing to unpack .../303-r-bioc-rhtslib_3.2.0+dfsg-2_amd64.deb ... 152s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 152s Selecting previously unselected package r-bioc-rsamtools. 152s Preparing to unpack .../304-r-bioc-rsamtools_2.22.0+dfsg-2_amd64.deb ... 152s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 153s Selecting previously unselected package r-bioc-genomicalignments. 153s Preparing to unpack .../305-r-bioc-genomicalignments_1.42.0-2_amd64.deb ... 153s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 153s Selecting previously unselected package r-cran-rcurl. 153s Preparing to unpack .../306-r-cran-rcurl_1.98-1.16+dfsg-1_amd64.deb ... 153s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 153s Selecting previously unselected package r-cran-rjson. 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/usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 162s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 162s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 162s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 162s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 162s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 162s Setting up texlive-bibtex-extra (2024.20250309-2) ... 162s Setting up r-cran-reshape2 (1.4.4-2build1) ... 162s Setting up r-cran-interp (1.1-6-1) ... 162s Setting up r-cran-httr2 (1.1.1-1) ... 162s Setting up r-cran-httr (1.4.7+dfsg-1) ... 162s Setting up r-cran-gridextra (2.3-3build1) ... 162s Setting up r-cran-hms (1.1.3-1) ... 162s Setting up r-cran-scales (1.3.0-1) ... 162s Setting 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164s Running updmap-sys. This may take some time... done. 164s Running mktexlsr /var/lib/texmf ... done. 165s Building format(s) --all. 198s This may take some time... done. 199s autopkgtest [22:12:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 199s autopkgtest [22:12:53]: test pkg-r-autopkgtest: [----------------------- 200s Test: Try to load the R library CNEr 200s 200s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 200s Copyright (C) 2025 The R Foundation for Statistical Computing 200s Platform: x86_64-pc-linux-gnu 200s 200s R is free software and comes with ABSOLUTELY NO WARRANTY. 200s You are welcome to redistribute it under certain conditions. 200s Type 'license()' or 'licence()' for distribution details. 200s 200s R is a collaborative project with many contributors. 200s Type 'contributors()' for more information and 200s 'citation()' on how to cite R or R packages in publications. 200s 200s Type 'demo()' for some demos, 'help()' for on-line help, or 200s 'help.start()' for an HTML browser interface to help. 200s Type 'q()' to quit R. 200s 200s > library('CNEr') 210s 211s > 211s Other tests are currently unsupported! 211s They will be progressively added. 211s autopkgtest [22:13:05]: test pkg-r-autopkgtest: -----------------------] 212s pkg-r-autopkgtest PASS 212s autopkgtest [22:13:06]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 212s autopkgtest [22:13:06]: @@@@@@@@@@@@@@@@@@@@ summary 212s pkg-r-autopkgtest PASS 229s nova [W] Skipping flock for amd64 229s Creating nova instance adt-questing-amd64-r-bioc-cner-20250503-220934-juju-7f2275-prod-proposed-migration-environment-2-15228f43-42cb-4da1-9098-016f3668ca49 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 229s nova [W] Timed out waiting for 4aea82b0-868b-4d58-975b-4f2dd64b927a to get deleted.