0s autopkgtest [22:06:43]: starting date and time: 2025-05-03 22:06:43+0000 0s autopkgtest [22:06:43]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [22:06:43]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s_46ap83/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:r-bioc-bioccheck,src:r-bioc-graph,src:r-bioc-iranges,src:r-bioc-pwalign,src:r-cran-rlang,src:r-cran-seurat,src:r-cran-sf --apt-upgrade r-bioc-affxparser --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.5.0-3 r-bioc-bioccheck/1.42.1+dfsg-2 r-bioc-graph/1.84.1-2 r-bioc-iranges/2.40.1-3 r-bioc-pwalign/1.2.0-3 r-cran-rlang/1.1.5-3 r-cran-seurat/5.2.1-5 r-cran-sf/1.0-19+dfsg-2' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-10.secgroup --name adt-questing-amd64-r-bioc-affxparser-20250503-220643-juju-7f2275-prod-proposed-migration-environment-2-73d0442a-6e1d-49c1-9dd4-676c2bb801a2 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [22:07:35]: testbed dpkg architecture: amd64 52s autopkgtest [22:07:35]: testbed apt version: 3.0.0 52s autopkgtest [22:07:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [22:07:35]: testbed release detected to be: None 53s autopkgtest [22:07:36]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 54s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 54s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 54s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 54s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1412 kB] 54s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 54s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.6 kB] 54s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [145 kB] 54s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [201 kB] 54s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1422 kB] 54s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [573 kB] 54s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [24.0 kB] 54s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [51.1 kB] 55s Fetched 4118 kB in 1s (3479 kB/s) 56s Reading package lists... 56s autopkgtest [22:07:39]: upgrading testbed (apt dist-upgrade and autopurge) 57s Reading package lists... 57s Building dependency tree... 57s Reading state information... 57s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 57s Starting 2 pkgProblemResolver with broken count: 0 57s Done 58s Entering ResolveByKeep 58s 58s Calculating upgrade... 58s The following packages will be upgraded: 58s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 58s libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient 58s sos 59s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 59s Need to get 2693 kB of archives. 59s After this operation, 104 kB disk space will be freed. 59s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 59s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 59s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 59s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 59s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 59s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 59s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 59s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 59s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 59s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 59s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 59s Preconfiguring packages ... 59s Fetched 2693 kB in 1s (4364 kB/s) 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 60s Preparing to unpack .../debianutils_5.22_amd64.deb ... 60s Unpacking debianutils (5.22) over (5.21) ... 60s Setting up debianutils (5.22) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 60s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 60s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 60s Setting up libsepol2:amd64 (3.8.1-1) ... 60s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 60s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 60s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 60s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 60s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 60s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 60s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 60s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 60s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 60s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 60s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 60s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 60s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 60s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 61s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 61s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 61s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 61s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 61s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 61s Setting up sos (4.9.1-1) ... 61s Setting up libnftnl11:amd64 (1.2.9-1) ... 61s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 63s Setting up python3-lazr.restfulclient (0.14.6-3) ... 63s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 63s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 63s Setting up libmbim-proxy (1.32.0-1) ... 63s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 63s Setting up libqmi-proxy (1.36.0-1) ... 63s Processing triggers for libc-bin (2.41-6ubuntu1) ... 63s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 63s Processing triggers for man-db (2.13.0-1) ... 65s Reading package lists... 65s Building dependency tree... 65s Reading state information... 66s Starting pkgProblemResolver with broken count: 0 66s Starting 2 pkgProblemResolver with broken count: 0 66s Done 66s Solving dependencies... 66s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 67s autopkgtest [22:07:50]: rebooting testbed after setup commands that affected boot 90s autopkgtest [22:08:13]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 92s autopkgtest [22:08:15]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-affxparser 94s Get:1 http://ftpmaster.internal/ubuntu questing/universe r-bioc-affxparser 1.78.0-2 (dsc) [2123 B] 94s Get:2 http://ftpmaster.internal/ubuntu questing/universe r-bioc-affxparser 1.78.0-2 (tar) [819 kB] 94s Get:3 http://ftpmaster.internal/ubuntu questing/universe r-bioc-affxparser 1.78.0-2 (diff) [3400 B] 94s gpgv: Signature made Sat Jan 11 13:59:36 2025 UTC 94s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 94s gpgv: issuer "crusoe@debian.org" 94s gpgv: Can't check signature: No public key 94s dpkg-source: warning: cannot verify inline signature for ./r-bioc-affxparser_1.78.0-2.dsc: no acceptable signature found 95s autopkgtest [22:08:18]: testing package r-bioc-affxparser version 1.78.0-2 95s autopkgtest [22:08:18]: build not needed 97s autopkgtest [22:08:20]: test pkg-r-autopkgtest: preparing testbed 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 98s The following NEW packages will be installed: 98s build-essential cpp cpp-14 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu 98s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 98s g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-14 98s gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-14 98s gfortran-14-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 98s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 98s libdeflate0 libfontconfig1 libgcc-14-dev libgfortran-14-dev libgfortran5 98s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 98s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 98s libjpeg8-dev liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 98s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 98s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 98s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libquadmath0 98s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data 98s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 98s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 libzstd-dev 98s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 98s r-bioc-affxparser r-bioc-biocgenerics r-cran-r.methodss3 r-cran-r.oo 98s r-cran-r.utils unzip x11-common xdg-utils zip zlib1g-dev 98s 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. 98s Need to get 149 MB of archives. 98s After this operation, 457 MB of additional disk space will be used. 98s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 98s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 98s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 99s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 99s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 99s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 99s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB] 99s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 99s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 99s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 99s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 99s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 99s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 99s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 99s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 99s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 99s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 99s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 99s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 99s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 99s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 100s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB] 100s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB] 100s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 100s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 100s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 100s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 dctrl-tools amd64 2.24-3build3 [106 kB] 100s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 100s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 100s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 100s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 100s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 100s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 100s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB] 100s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB] 100s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB] 100s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1022 B] 100s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran amd64 4:14.2.0-1ubuntu1 [1174 B] 100s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 icu-devtools amd64 76.1-1ubuntu2 [237 kB] 100s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 100s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libblas-dev amd64 3.12.1-2 [338 kB] 100s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libbz2-dev amd64 1.0.8-6 [33.8 kB] 100s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 100s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 100s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 100s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 100s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 100s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 100s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 100s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate-dev amd64 1.23-2 [56.8 kB] 100s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 100s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 100s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 100s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 101s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libicu-dev amd64 76.1-1ubuntu2 [12.6 MB] 101s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 101s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8-dev amd64 2.1.5-3ubuntu2 [324 kB] 101s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 101s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 101s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 101s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 101s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack-dev amd64 3.12.1-2 [6489 kB] 101s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 101s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libncurses-dev amd64 6.5+20250216-2 [424 kB] 101s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 101s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 101s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 101s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 101s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 101s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper2 amd64 2.2.5-0.3 [17.4 kB] 101s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libpaper-utils amd64 2.2.5-0.3 [15.5 kB] 101s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 101s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 101s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-posix3 amd64 10.45-1 [7204 B] 101s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-dev amd64 10.45-1 [908 kB] 101s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libpkgconf3 amd64 1.8.1-4 [32.3 kB] 101s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 101s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libpng-dev amd64 1.6.47-1.1 [298 kB] 101s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libreadline-dev amd64 8.2-6 [184 kB] 101s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 101s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 101s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 101s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 101s Get:84 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 101s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 101s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 101s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 101s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 101s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 101s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libzstd-dev amd64 1.5.6+dfsg-2 [444 kB] 101s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 zip amd64 3.0-14ubuntu2 [185 kB] 102s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 unzip amd64 6.0-28ubuntu6 [181 kB] 102s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 102s Get:94 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-core amd64 4.5.0-3 [28.9 MB] 102s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 liblzma-dev amd64 5.6.4-1ubuntu1 [189 kB] 102s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf-bin amd64 1.8.1-4 [21.6 kB] 102s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 pkgconf amd64 1.8.1-4 [16.8 kB] 102s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libtirpc-dev amd64 1.3.4+ds-1.3 [193 kB] 102s Get:99 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 r-base-dev all 4.5.0-3 [4188 B] 102s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 102s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-biocgenerics all 0.52.0-2 [624 kB] 102s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 r-bioc-affxparser amd64 1.78.0-2 [1021 kB] 103s Get:103 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 103s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.oo all 1.27.0-1 [979 kB] 103s Get:105 http://ftpmaster.internal/ubuntu questing/universe amd64 r-cran-r.utils all 2.13.0-1 [1423 kB] 103s Preconfiguring packages ... 103s Fetched 149 MB in 5s (28.5 MB/s) 103s Selecting previously unselected package libisl23:amd64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 104s Preparing to unpack .../000-libisl23_0.27-1_amd64.deb ... 104s Unpacking libisl23:amd64 (0.27-1) ... 104s Selecting previously unselected package libmpc3:amd64. 104s Preparing to unpack .../001-libmpc3_1.3.1-1build2_amd64.deb ... 104s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 104s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 104s Preparing to unpack .../002-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 104s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 104s Selecting previously unselected package cpp-14. 104s Preparing to unpack .../003-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 104s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 104s Selecting previously unselected package cpp-x86-64-linux-gnu. 104s Preparing to unpack .../004-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 104s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 104s Selecting previously unselected package cpp. 104s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 104s Unpacking cpp (4:14.2.0-1ubuntu1) ... 104s Selecting previously unselected package libcc1-0:amd64. 104s Preparing to unpack .../006-libcc1-0_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libgomp1:amd64. 104s Preparing to unpack .../007-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libitm1:amd64. 104s Preparing to unpack .../008-libitm1_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libasan8:amd64. 104s Preparing to unpack .../009-libasan8_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package liblsan0:amd64. 104s Preparing to unpack .../010-liblsan0_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libtsan2:amd64. 104s Preparing to unpack .../011-libtsan2_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libubsan1:amd64. 104s Preparing to unpack .../012-libubsan1_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libhwasan0:amd64. 104s Preparing to unpack .../013-libhwasan0_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libquadmath0:amd64. 104s Preparing to unpack .../014-libquadmath0_15-20250404-0ubuntu1_amd64.deb ... 104s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ... 104s Selecting previously unselected package libgcc-14-dev:amd64. 104s Preparing to unpack .../015-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ... 104s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 105s Preparing to unpack .../016-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 105s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package gcc-14. 105s Preparing to unpack .../017-gcc-14_14.2.0-19ubuntu2_amd64.deb ... 105s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package gcc-x86-64-linux-gnu. 105s Preparing to unpack .../018-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 105s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 105s Selecting previously unselected package gcc. 105s Preparing to unpack .../019-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 105s Unpacking gcc (4:14.2.0-1ubuntu1) ... 105s Selecting previously unselected package libstdc++-14-dev:amd64. 105s Preparing to unpack .../020-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ... 105s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package g++-14-x86-64-linux-gnu. 105s Preparing to unpack .../021-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 105s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package g++-14. 105s Preparing to unpack .../022-g++-14_14.2.0-19ubuntu2_amd64.deb ... 105s Unpacking g++-14 (14.2.0-19ubuntu2) ... 105s Selecting previously unselected package g++-x86-64-linux-gnu. 105s Preparing to unpack .../023-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 105s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 105s Selecting previously unselected package g++. 105s Preparing to unpack .../024-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 105s Unpacking g++ (4:14.2.0-1ubuntu1) ... 105s Selecting previously unselected package build-essential. 105s Preparing to unpack .../025-build-essential_12.12ubuntu1_amd64.deb ... 105s Unpacking build-essential (12.12ubuntu1) ... 106s Selecting previously unselected package dctrl-tools. 106s Preparing to unpack .../026-dctrl-tools_2.24-3build3_amd64.deb ... 106s Unpacking dctrl-tools (2.24-3build3) ... 106s Selecting previously unselected package fonts-dejavu-mono. 106s Preparing to unpack .../027-fonts-dejavu-mono_2.37-8_all.deb ... 106s Unpacking fonts-dejavu-mono (2.37-8) ... 106s Selecting previously unselected package fonts-dejavu-core. 106s Preparing to unpack .../028-fonts-dejavu-core_2.37-8_all.deb ... 106s Unpacking fonts-dejavu-core (2.37-8) ... 106s Selecting previously unselected package fontconfig-config. 106s Preparing to unpack .../029-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 106s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 106s Selecting previously unselected package libfontconfig1:amd64. 106s Preparing to unpack .../030-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 106s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 106s Selecting previously unselected package fontconfig. 106s Preparing to unpack .../031-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 106s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 106s Selecting previously unselected package libgfortran5:amd64. 106s Preparing to unpack .../032-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 106s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 106s Selecting previously unselected package libgfortran-14-dev:amd64. 106s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ... 106s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 106s Preparing to unpack .../034-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 106s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package gfortran-14. 106s Preparing to unpack .../035-gfortran-14_14.2.0-19ubuntu2_amd64.deb ... 106s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 106s Selecting previously unselected package gfortran-x86-64-linux-gnu. 106s Preparing to unpack .../036-gfortran-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 106s Unpacking gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 106s Selecting previously unselected package gfortran. 106s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_amd64.deb ... 106s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 106s Selecting previously unselected package icu-devtools. 106s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_amd64.deb ... 106s Unpacking icu-devtools (76.1-1ubuntu2) ... 106s Selecting previously unselected package libblas3:amd64. 106s Preparing to unpack .../039-libblas3_3.12.1-2_amd64.deb ... 106s Unpacking libblas3:amd64 (3.12.1-2) ... 106s Selecting previously unselected package libblas-dev:amd64. 106s Preparing to unpack .../040-libblas-dev_3.12.1-2_amd64.deb ... 106s Unpacking libblas-dev:amd64 (3.12.1-2) ... 106s Selecting previously unselected package libbz2-dev:amd64. 106s Preparing to unpack .../041-libbz2-dev_1.0.8-6_amd64.deb ... 106s Unpacking libbz2-dev:amd64 (1.0.8-6) ... 106s Selecting previously unselected package libpixman-1-0:amd64. 106s Preparing to unpack .../042-libpixman-1-0_0.44.0-3_amd64.deb ... 106s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 106s Selecting previously unselected package libxcb-render0:amd64. 106s Preparing to unpack .../043-libxcb-render0_1.17.0-2_amd64.deb ... 106s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 106s Selecting previously unselected package libxcb-shm0:amd64. 106s Preparing to unpack .../044-libxcb-shm0_1.17.0-2_amd64.deb ... 106s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 106s Selecting previously unselected package libxrender1:amd64. 106s Preparing to unpack .../045-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 106s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 106s Selecting previously unselected package libcairo2:amd64. 106s Preparing to unpack .../046-libcairo2_1.18.4-1_amd64.deb ... 106s Unpacking libcairo2:amd64 (1.18.4-1) ... 106s Selecting previously unselected package libdatrie1:amd64. 106s Preparing to unpack .../047-libdatrie1_0.2.13-3build1_amd64.deb ... 106s Unpacking libdatrie1:amd64 (0.2.13-3build1) ... 107s Selecting previously unselected package libdeflate0:amd64. 107s Preparing to unpack .../048-libdeflate0_1.23-2_amd64.deb ... 107s Unpacking libdeflate0:amd64 (1.23-2) ... 107s Selecting previously unselected package libdeflate-dev:amd64. 107s Preparing to unpack .../049-libdeflate-dev_1.23-2_amd64.deb ... 107s Unpacking libdeflate-dev:amd64 (1.23-2) ... 107s Selecting previously unselected package libgraphite2-3:amd64. 107s Preparing to unpack .../050-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 107s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 107s Selecting previously unselected package libharfbuzz0b:amd64. 107s Preparing to unpack .../051-libharfbuzz0b_10.2.0-1_amd64.deb ... 107s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 107s Selecting previously unselected package x11-common. 107s Preparing to unpack .../052-x11-common_1%3a7.7+23ubuntu4_all.deb ... 107s Unpacking x11-common (1:7.7+23ubuntu4) ... 107s Selecting previously unselected package libice6:amd64. 107s Preparing to unpack .../053-libice6_2%3a1.1.1-1_amd64.deb ... 107s Unpacking libice6:amd64 (2:1.1.1-1) ... 107s Selecting previously unselected package libicu-dev:amd64. 107s Preparing to unpack .../054-libicu-dev_76.1-1ubuntu2_amd64.deb ... 107s Unpacking libicu-dev:amd64 (76.1-1ubuntu2) ... 107s Selecting previously unselected package libjpeg-turbo8:amd64. 107s Preparing to unpack .../055-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 107s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 107s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 107s Preparing to unpack .../056-libjpeg-turbo8-dev_2.1.5-3ubuntu2_amd64.deb ... 107s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-3ubuntu2) ... 107s Selecting previously unselected package libjpeg8:amd64. 107s Preparing to unpack .../057-libjpeg8_8c-2ubuntu11_amd64.deb ... 107s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 107s Selecting previously unselected package libjpeg8-dev:amd64. 107s Preparing to unpack .../058-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 107s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 107s Selecting previously unselected package libjpeg-dev:amd64. 107s Preparing to unpack .../059-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 107s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 107s Selecting previously unselected package liblapack3:amd64. 107s Preparing to unpack .../060-liblapack3_3.12.1-2_amd64.deb ... 107s Unpacking liblapack3:amd64 (3.12.1-2) ... 107s Selecting previously unselected package liblapack-dev:amd64. 107s Preparing to unpack .../061-liblapack-dev_3.12.1-2_amd64.deb ... 107s Unpacking liblapack-dev:amd64 (3.12.1-2) ... 107s Selecting previously unselected package liblerc4:amd64. 107s Preparing to unpack .../062-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 107s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 107s Selecting previously unselected package libncurses-dev:amd64. 107s Preparing to unpack .../063-libncurses-dev_6.5+20250216-2_amd64.deb ... 107s Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... 107s Selecting previously unselected package libthai-data. 107s Preparing to unpack .../064-libthai-data_0.1.29-2build1_all.deb ... 107s Unpacking libthai-data (0.1.29-2build1) ... 107s Selecting previously unselected package libthai0:amd64. 107s Preparing to unpack .../065-libthai0_0.1.29-2build1_amd64.deb ... 107s Unpacking libthai0:amd64 (0.1.29-2build1) ... 107s Selecting previously unselected package libpango-1.0-0:amd64. 107s Preparing to unpack .../066-libpango-1.0-0_1.56.3-1_amd64.deb ... 107s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ... 107s Selecting previously unselected package libpangoft2-1.0-0:amd64. 108s Preparing to unpack .../067-libpangoft2-1.0-0_1.56.3-1_amd64.deb ... 108s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ... 108s Selecting previously unselected package libpangocairo-1.0-0:amd64. 108s Preparing to unpack .../068-libpangocairo-1.0-0_1.56.3-1_amd64.deb ... 108s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ... 108s Selecting previously unselected package libpaper2:amd64. 108s Preparing to unpack .../069-libpaper2_2.2.5-0.3_amd64.deb ... 108s Unpacking libpaper2:amd64 (2.2.5-0.3) ... 108s Selecting previously unselected package libpaper-utils. 108s Preparing to unpack .../070-libpaper-utils_2.2.5-0.3_amd64.deb ... 108s Unpacking libpaper-utils (2.2.5-0.3) ... 108s Selecting previously unselected package libpcre2-16-0:amd64. 108s Preparing to unpack .../071-libpcre2-16-0_10.45-1_amd64.deb ... 108s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 108s Selecting previously unselected package libpcre2-32-0:amd64. 108s Preparing to unpack .../072-libpcre2-32-0_10.45-1_amd64.deb ... 108s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 108s Selecting previously unselected package libpcre2-posix3:amd64. 108s Preparing to unpack .../073-libpcre2-posix3_10.45-1_amd64.deb ... 108s Unpacking libpcre2-posix3:amd64 (10.45-1) ... 108s Selecting previously unselected package libpcre2-dev:amd64. 108s Preparing to unpack .../074-libpcre2-dev_10.45-1_amd64.deb ... 108s Unpacking libpcre2-dev:amd64 (10.45-1) ... 108s Selecting previously unselected package libpkgconf3:amd64. 108s Preparing to unpack .../075-libpkgconf3_1.8.1-4_amd64.deb ... 108s Unpacking libpkgconf3:amd64 (1.8.1-4) ... 108s Selecting previously unselected package zlib1g-dev:amd64. 108s Preparing to unpack .../076-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 108s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 108s Selecting previously unselected package libpng-dev:amd64. 108s Preparing to unpack .../077-libpng-dev_1.6.47-1.1_amd64.deb ... 108s Unpacking libpng-dev:amd64 (1.6.47-1.1) ... 108s Selecting previously unselected package libreadline-dev:amd64. 108s Preparing to unpack .../078-libreadline-dev_8.2-6_amd64.deb ... 108s Unpacking libreadline-dev:amd64 (8.2-6) ... 108s Selecting previously unselected package libsharpyuv0:amd64. 108s Preparing to unpack .../079-libsharpyuv0_1.5.0-0.1_amd64.deb ... 108s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 108s Selecting previously 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110s Setting up fonts-dejavu-core (2.37-8) ... 110s Setting up pkgconf-bin (1.8.1-4) ... 110s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 110s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 110s Setting up libwebp7:amd64 (1.5.0-0.1) ... 110s Setting up liblzma-dev:amd64 (5.6.4-1ubuntu1) ... 110s Setting up libubsan1:amd64 (15-20250404-0ubuntu1) ... 110s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 110s Setting up libpcre2-posix3:amd64 (10.45-1) ... 110s Setting up libhwasan0:amd64 (15-20250404-0ubuntu1) ... 110s Setting up libasan8:amd64 (15-20250404-0ubuntu1) ... 110s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 110s Setting up libthai-data (0.1.29-2build1) ... 110s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 110s Setting up libpaper2:amd64 (2.2.5-0.3) ... 110s Setting up libtsan2:amd64 (15-20250404-0ubuntu1) ... 110s Setting up libisl23:amd64 (0.27-1) ... 110s Setting up libdeflate-dev:amd64 (1.23-2) ... 110s Setting up libicu-dev:amd64 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(liblapack.so.3-x86_64-linux-gnu) in auto mode 110s Setting up libpcre2-dev:amd64 (10.45-1) ... 110s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 110s Setting up libpng-dev:amd64 (1.6.47-1.1) ... 110s Setting up libpaper-utils (2.2.5-0.3) ... 110s Setting up pkgconf:amd64 (1.8.1-4) ... 110s Setting up libthai0:amd64 (0.1.29-2build1) ... 110s Setting up liblapack-dev:amd64 (3.12.1-2) ... 110s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 110s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 110s Setting up cpp-14 (14.2.0-19ubuntu2) ... 110s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 110s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 110s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 110s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 110s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 110s Setting up libsm6:amd64 (2:1.2.4-1) ... 110s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 110s Setting up libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 110s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 112s Regenerating fonts cache... done. 112s Setting up libxft2:amd64 (2.3.6-1build1) ... 112s Setting up libtk8.6:amd64 (8.6.16-1) ... 112s Setting up libpango-1.0-0:amd64 (1.56.3-1) ... 112s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 112s Setting up libcairo2:amd64 (1.18.4-1) ... 112s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 112s Setting up cpp (4:14.2.0-1ubuntu1) ... 112s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 112s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... 112s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... 112s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 112s Setting up gcc-14 (14.2.0-19ubuntu2) ... 112s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 112s Setting up r-base-core (4.5.0-3) ... 112s Creating config file /etc/R/Renviron with new version 112s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 112s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 112s Setting up g++-14 (14.2.0-19ubuntu2) ... 112s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 112s Setting up r-bioc-biocgenerics (0.52.0-2) ... 112s Setting up gfortran-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 112s Setting up gcc (4:14.2.0-1ubuntu1) ... 112s Setting up r-bioc-affxparser (1.78.0-2) ... 112s Setting up r-cran-r.methodss3 (1.8.2-1) ... 112s Setting up g++ (4:14.2.0-1ubuntu1) ... 112s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 112s Setting up build-essential (12.12ubuntu1) ... 113s Setting up r-cran-r.oo (1.27.0-1) ... 113s Setting up gfortran (4:14.2.0-1ubuntu1) ... 113s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 113s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 113s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 113s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 113s Setting up r-cran-r.utils (2.13.0-1) ... 113s Setting up r-base-dev (4.5.0-3) ... 113s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 113s Processing triggers for libc-bin (2.41-6ubuntu1) ... 113s Processing triggers for man-db (2.13.0-1) ... 114s Processing triggers for install-info (7.1.1-1) ... 116s autopkgtest [22:08:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 116s autopkgtest [22:08:39]: test pkg-r-autopkgtest: [----------------------- 116s Test: Try to load the R library affxparser 116s 116s R version 4.5.0 (2025-04-11) -- "How About a Twenty-Six" 116s Copyright (C) 2025 The R Foundation for Statistical Computing 116s Platform: x86_64-pc-linux-gnu 116s 116s R is free software and comes with ABSOLUTELY NO WARRANTY. 116s You are welcome to redistribute it under certain conditions. 116s Type 'license()' or 'licence()' for distribution details. 116s 116s R is a collaborative project with many contributors. 116s Type 'contributors()' for more information and 116s 'citation()' on how to cite R or R packages in publications. 116s 116s Type 'demo()' for some demos, 'help()' for on-line help, or 116s 'help.start()' for an HTML browser interface to help. 116s Type 'q()' to quit R. 116s 116s > library('affxparser') 116s > 116s Other tests are currently unsupported! 116s They will be progressively added. 116s autopkgtest [22:08:39]: test pkg-r-autopkgtest: -----------------------] 117s pkg-r-autopkgtest PASS 117s autopkgtest [22:08:40]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 117s autopkgtest [22:08:40]: @@@@@@@@@@@@@@@@@@@@ summary 117s pkg-r-autopkgtest PASS 134s nova [W] Skipping flock for amd64 134s Creating nova instance adt-questing-amd64-r-bioc-affxparser-20250503-220643-juju-7f2275-prod-proposed-migration-environment-2-73d0442a-6e1d-49c1-9dd4-676c2bb801a2 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 134s nova [W] Timed out waiting for 3c267f73-c1a7-480b-a982-00bcc8027337 to get deleted.