0s autopkgtest [21:06:48]: starting date and time: 2025-05-03 21:06:48+0000 0s autopkgtest [21:06:48]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [21:06:48]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kuz6oota/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pytest --apt-upgrade python-pyfaidx --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pytest/8.3.5-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-13.secgroup --name adt-questing-amd64-python-pyfaidx-20250503-210648-juju-7f2275-prod-proposed-migration-environment-15-88396b25-6d23-4318-90ad-fe4190604510 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 92s autopkgtest [21:08:20]: testbed dpkg architecture: amd64 92s autopkgtest [21:08:20]: testbed apt version: 3.0.0 92s autopkgtest [21:08:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup 92s autopkgtest [21:08:20]: testbed release detected to be: None 93s autopkgtest [21:08:21]: updating testbed package index (apt update) 93s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 94s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 94s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 94s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 94s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [149 kB] 94s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1430 kB] 94s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 94s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [146 kB] 94s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [203 kB] 94s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [570 kB] 94s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1411 kB] 94s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 94s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.6 kB] 95s Fetched 4124 kB in 1s (3353 kB/s) 96s Reading package lists... 96s autopkgtest [21:08:24]: upgrading testbed (apt dist-upgrade and autopurge) 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 97s Starting 2 pkgProblemResolver with broken count: 0 97s Done 98s Entering ResolveByKeep 98s 98s Calculating upgrade... 99s The following packages will be upgraded: 99s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 99s libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient 99s sos 99s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 2693 kB of archives. 99s After this operation, 104 kB disk space will be freed. 99s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 99s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 99s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 99s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 99s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 99s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 99s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 99s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 99s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 99s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 99s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 100s Preconfiguring packages ... 100s Fetched 2693 kB in 1s (4350 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 100s Preparing to unpack .../debianutils_5.22_amd64.deb ... 100s Unpacking debianutils (5.22) over (5.21) ... 100s Setting up debianutils (5.22) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 100s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 100s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 100s Setting up libsepol2:amd64 (3.8.1-1) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 100s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 100s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 100s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 101s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 101s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 101s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 101s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 101s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 101s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 101s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 101s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 101s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 101s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 101s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 101s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 102s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 102s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 102s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 102s Setting up sos (4.9.1-1) ... 102s Setting up libnftnl11:amd64 (1.2.9-1) ... 102s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 104s Setting up python3-lazr.restfulclient (0.14.6-3) ... 104s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 104s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 104s Setting up libmbim-proxy (1.32.0-1) ... 104s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 105s Setting up libqmi-proxy (1.36.0-1) ... 105s Processing triggers for libc-bin (2.41-6ubuntu1) ... 105s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 105s Processing triggers for man-db (2.13.0-1) ... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s Solving dependencies... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [21:08:36]: rebooting testbed after setup commands that affected boot 131s autopkgtest [21:08:59]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 134s autopkgtest [21:09:02]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pyfaidx 136s Get:1 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (dsc) [2544 B] 136s Get:2 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (tar) [96.5 kB] 136s Get:3 http://ftpmaster.internal/ubuntu questing/universe python-pyfaidx 0.8.1.3-1 (diff) [7096 B] 136s gpgv: Signature made Wed Oct 16 19:20:44 2024 UTC 136s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 136s gpgv: issuer "emollier@debian.org" 136s gpgv: Can't check signature: No public key 136s dpkg-source: warning: cannot verify inline signature for ./python-pyfaidx_0.8.1.3-1.dsc: no acceptable signature found 137s autopkgtest [21:09:05]: testing package python-pyfaidx version 0.8.1.3-1 137s autopkgtest [21:09:05]: build not needed 137s autopkgtest [21:09:05]: test run-unit-test: preparing testbed 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 139s The following NEW packages will be installed: 139s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 139s libblas3 libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 139s libgomp1 libgraphite2-3 libharfbuzz0b libhtscodecs2 libimagequant0 libjbig0 139s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libopenjp2-7 139s libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 139s libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 python-pyfaidx-examples 139s python3-all python3-biopython python3-cairo python3-freetype 139s python3-importlib-metadata python3-iniconfig python3-numpy python3-numpy-dev 139s python3-pil python3-pluggy python3-pyfaidx python3-pytest python3-reportlab 139s python3-rlpycairo sgml-base tabix w3c-sgml-lib x11-common xfonts-encodings 139s xfonts-utils xml-core 139s 0 upgraded, 54 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 32.2 MB of archives. 139s After this operation, 103 MB of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 139s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 139s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 139s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 140s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 140s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 sgml-base all 1.31 [11.4 kB] 140s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 140s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 140s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 140s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 140s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 140s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 140s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 140s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 140s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 140s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 140s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 140s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 140s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 140s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 140s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 140s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 140s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 140s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 140s Get:25 http://ftpmaster.internal/ubuntu questing/universe amd64 libhtscodecs2 amd64 1.6.1-2 [132 kB] 140s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 140s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 140s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 140s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 140s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 140s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 140s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 140s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 140s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 140s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 140s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 140s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 140s Get:38 http://ftpmaster.internal/ubuntu questing/universe amd64 python-pyfaidx-examples all 0.8.1.3-1 [38.6 kB] 140s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B] 140s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 140s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 140s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 python3-cairo amd64 1.27.0-2 [124 kB] 140s Get:43 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 140s Get:44 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 140s Get:45 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-reportlab all 4.3.1-1 [1137 kB] 140s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 xml-core all 0.19 [20.3 kB] 140s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 140s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-biopython amd64 1.85+dfsg-2build1 [1739 kB] 140s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 python3-importlib-metadata all 8.6.1-1 [20.7 kB] 140s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 140s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 140s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 140s Get:53 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-pytest all 8.3.5-2 [252 kB] 140s Get:54 http://ftpmaster.internal/ubuntu questing/universe amd64 tabix amd64 1.21+ds-1 [642 kB] 141s Fetched 32.2 MB in 2s (19.5 MB/s) 141s Selecting previously unselected package python3-numpy-dev:amd64. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 141s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 141s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 141s Selecting previously unselected package libblas3:amd64. 141s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 141s Unpacking libblas3:amd64 (3.12.1-2) ... 141s Selecting previously unselected package libgfortran5:amd64. 141s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 141s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 141s Selecting previously unselected package liblapack3:amd64. 141s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 141s Unpacking liblapack3:amd64 (3.12.1-2) ... 142s Selecting previously unselected package python3-numpy. 142s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 142s Unpacking python3-numpy (1:2.2.3+ds-5) ... 142s Selecting previously unselected package sgml-base. 142s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 142s Unpacking sgml-base (1.31) ... 142s Selecting previously unselected package fonts-dejavu-mono. 142s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-mono (2.37-8) ... 142s Selecting previously unselected package fonts-dejavu-core. 142s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-core (2.37-8) ... 142s Selecting previously unselected package libfontenc1:amd64. 142s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 142s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 142s Selecting previously unselected package x11-common. 142s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu4_all.deb ... 142s Unpacking x11-common (1:7.7+23ubuntu4) ... 142s Selecting previously unselected package xfonts-encodings. 142s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 142s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 142s Selecting previously unselected package xfonts-utils. 142s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_amd64.deb ... 142s Unpacking xfonts-utils (1:7.7+7) ... 142s Selecting previously unselected package fonts-urw-base35. 142s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 142s Unpacking fonts-urw-base35 (20200910-8) ... 142s Selecting previously unselected package fontconfig-config. 142s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 143s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 143s Selecting previously unselected package libfontconfig1:amd64. 143s Preparing to unpack .../14-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 143s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 143s Selecting previously unselected package libpixman-1-0:amd64. 143s Preparing to unpack .../15-libpixman-1-0_0.44.0-3_amd64.deb ... 143s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 143s Selecting previously unselected package libxcb-render0:amd64. 143s Preparing to unpack .../16-libxcb-render0_1.17.0-2_amd64.deb ... 143s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 143s Selecting previously unselected package libxcb-shm0:amd64. 143s Preparing to unpack .../17-libxcb-shm0_1.17.0-2_amd64.deb ... 143s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 143s Selecting previously unselected package libxrender1:amd64. 143s Preparing to unpack .../18-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 143s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 143s Selecting previously unselected package libcairo2:amd64. 143s Preparing to unpack .../19-libcairo2_1.18.4-1_amd64.deb ... 143s Unpacking libcairo2:amd64 (1.18.4-1) ... 143s Selecting previously unselected package libdeflate0:amd64. 143s Preparing to unpack .../20-libdeflate0_1.23-2_amd64.deb ... 143s Unpacking libdeflate0:amd64 (1.23-2) ... 143s Selecting previously unselected package libgomp1:amd64. 143s Preparing to unpack .../21-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 143s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 143s Selecting previously unselected package libgraphite2-3:amd64. 143s Preparing to unpack .../22-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 143s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 143s Selecting previously unselected package libharfbuzz0b:amd64. 143s Preparing to unpack .../23-libharfbuzz0b_10.2.0-1_amd64.deb ... 143s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 143s Selecting previously unselected package libhtscodecs2:amd64. 143s Preparing to unpack .../24-libhtscodecs2_1.6.1-2_amd64.deb ... 143s Unpacking libhtscodecs2:amd64 (1.6.1-2) ... 143s Selecting previously unselected package libimagequant0:amd64. 143s Preparing to unpack .../25-libimagequant0_2.18.0-1build1_amd64.deb ... 143s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 143s Selecting previously unselected package libjpeg-turbo8:amd64. 143s Preparing to unpack .../26-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 143s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 143s Selecting previously unselected package libjpeg8:amd64. 143s Preparing to unpack .../27-libjpeg8_8c-2ubuntu11_amd64.deb ... 143s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 143s Selecting previously unselected package liblcms2-2:amd64. 143s Preparing to unpack .../28-liblcms2-2_2.16-2_amd64.deb ... 143s Unpacking liblcms2-2:amd64 (2.16-2) ... 143s Selecting previously unselected package liblerc4:amd64. 143s Preparing to unpack .../29-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 143s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 143s Selecting previously unselected package libraqm0:amd64. 143s Preparing to unpack .../30-libraqm0_0.10.2-1_amd64.deb ... 143s Unpacking libraqm0:amd64 (0.10.2-1) ... 143s Selecting previously unselected package libsharpyuv0:amd64. 143s Preparing to unpack .../31-libsharpyuv0_1.5.0-0.1_amd64.deb ... 143s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package libjbig0:amd64. 143s Preparing to unpack .../32-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 143s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 143s Selecting previously unselected package libwebp7:amd64. 143s Preparing to unpack .../33-libwebp7_1.5.0-0.1_amd64.deb ... 143s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package libtiff6:amd64. 143s Preparing to unpack .../34-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 143s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 143s Selecting previously unselected package libwebpdemux2:amd64. 143s Preparing to unpack .../35-libwebpdemux2_1.5.0-0.1_amd64.deb ... 143s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 143s Selecting previously unselected package libwebpmux3:amd64. 143s Preparing to unpack .../36-libwebpmux3_1.5.0-0.1_amd64.deb ... 143s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 144s Selecting previously unselected package python-pyfaidx-examples. 144s Preparing to unpack .../37-python-pyfaidx-examples_0.8.1.3-1_all.deb ... 144s Unpacking python-pyfaidx-examples (0.8.1.3-1) ... 144s Selecting previously unselected package python3-all. 144s Preparing to unpack .../38-python3-all_3.13.3-1_amd64.deb ... 144s Unpacking python3-all (3.13.3-1) ... 144s Selecting previously unselected package libopenjp2-7:amd64. 144s Preparing to unpack .../39-libopenjp2-7_2.5.3-2_amd64.deb ... 144s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 144s Selecting previously unselected package python3-pil:amd64. 144s Preparing to unpack .../40-python3-pil_11.1.0-5build1_amd64.deb ... 144s Unpacking python3-pil:amd64 (11.1.0-5build1) ... 144s Selecting previously unselected package python3-cairo. 144s Preparing to unpack .../41-python3-cairo_1.27.0-2_amd64.deb ... 144s Unpacking python3-cairo (1.27.0-2) ... 144s Selecting previously unselected package python3-freetype. 144s Preparing to unpack .../42-python3-freetype_2.5.1-1_all.deb ... 144s Unpacking python3-freetype (2.5.1-1) ... 144s Selecting previously unselected package python3-rlpycairo. 144s Preparing to unpack .../43-python3-rlpycairo_0.3.0-3_all.deb ... 144s Unpacking python3-rlpycairo (0.3.0-3) ... 144s Selecting previously unselected package python3-reportlab. 144s Preparing to unpack .../44-python3-reportlab_4.3.1-1_all.deb ... 144s Unpacking python3-reportlab (4.3.1-1) ... 144s Selecting previously unselected package xml-core. 144s Preparing to unpack .../45-xml-core_0.19_all.deb ... 144s Unpacking xml-core (0.19) ... 144s Selecting previously unselected package w3c-sgml-lib. 144s Preparing to unpack .../46-w3c-sgml-lib_1.3-3_all.deb ... 144s Unpacking w3c-sgml-lib (1.3-3) ... 144s Selecting previously unselected package python3-biopython. 144s Preparing to unpack .../47-python3-biopython_1.85+dfsg-2build1_amd64.deb ... 144s Unpacking python3-biopython (1.85+dfsg-2build1) ... 144s Selecting previously unselected package python3-importlib-metadata. 144s Preparing to unpack .../48-python3-importlib-metadata_8.6.1-1_all.deb ... 144s Unpacking python3-importlib-metadata (8.6.1-1) ... 144s Selecting previously unselected package python3-iniconfig. 144s Preparing to unpack .../49-python3-iniconfig_1.1.1-2_all.deb ... 144s Unpacking python3-iniconfig (1.1.1-2) ... 144s Selecting previously unselected package python3-pluggy. 144s Preparing to unpack .../50-python3-pluggy_1.5.0-1_all.deb ... 144s Unpacking python3-pluggy (1.5.0-1) ... 144s Selecting previously unselected package python3-pyfaidx. 144s Preparing to unpack .../51-python3-pyfaidx_0.8.1.3-1_all.deb ... 144s Unpacking python3-pyfaidx (0.8.1.3-1) ... 144s Selecting previously unselected package python3-pytest. 144s Preparing to unpack .../52-python3-pytest_8.3.5-2_all.deb ... 144s Unpacking python3-pytest (8.3.5-2) ... 144s Selecting previously unselected package tabix. 144s Preparing to unpack .../53-tabix_1.21+ds-1_amd64.deb ... 144s Unpacking tabix (1.21+ds-1) ... 144s Setting up libhtscodecs2:amd64 (1.6.1-2) ... 144s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 144s Setting up liblcms2-2:amd64 (2.16-2) ... 144s Setting up python3-iniconfig (1.1.1-2) ... 145s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 145s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 145s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 145s Setting up python3-importlib-metadata (8.6.1-1) ... 145s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 145s Setting up python-pyfaidx-examples (0.8.1.3-1) ... 145s Setting up libxcb-render0:amd64 (1.17.0-2) ... 145s Setting up x11-common (1:7.7+23ubuntu4) ... 145s Setting up libdeflate0:amd64 (1.23-2) ... 145s Setting up python3-all (3.13.3-1) ... 145s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 145s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 145s Setting up python3-freetype (2.5.1-1) ... 145s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 145s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 145s Setting up libblas3:amd64 (3.12.1-2) ... 145s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 145s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 145s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 145s Setting up fonts-dejavu-mono (2.37-8) ... 145s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 145s Setting up fonts-dejavu-core (2.37-8) ... 145s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 145s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 145s Setting up python3-pluggy (1.5.0-1) ... 146s Setting up libwebp7:amd64 (1.5.0-0.1) ... 146s Setting up libopenjp2-7:amd64 (2.5.3-2) ... 146s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 146s Setting up sgml-base (1.31) ... 146s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 146s Setting up tabix (1.21+ds-1) ... 146s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 146s Setting up python3-pyfaidx (0.8.1.3-1) ... 146s Setting up liblapack3:amd64 (3.12.1-2) ... 146s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 146s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 146s Setting up python3-pytest (8.3.5-2) ... 146s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 146s Setting up xfonts-utils (1:7.7+7) ... 146s Setting up libraqm0:amd64 (0.10.2-1) ... 146s Setting up python3-numpy (1:2.2.3+ds-5) ... 148s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 148s Setting up xml-core (0.19) ... 149s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 149s Setting up fonts-urw-base35 (20200910-8) ... 149s Setting up libcairo2:amd64 (1.18.4-1) ... 149s Setting up python3-pil:amd64 (11.1.0-5build1) ... 149s Setting up python3-cairo (1.27.0-2) ... 149s Setting up python3-rlpycairo (0.3.0-3) ... 150s Setting up python3-reportlab (4.3.1-1) ... 150s Processing triggers for libc-bin (2.41-6ubuntu1) ... 150s Processing triggers for man-db (2.13.0-1) ... 152s Processing triggers for sgml-base (1.31) ... 152s Setting up w3c-sgml-lib (1.3-3) ... 184s Setting up python3-biopython (1.85+dfsg-2build1) ... 187s autopkgtest [21:09:55]: test run-unit-test: [----------------------- 187s Testing with python3.13 in /tmp/autopkgtest.DTVMur/build.myC/src: 187s ============================= test session starts ============================== 187s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 187s cachedir: .pytest_cache 187s rootdir: /tmp/autopkgtest.DTVMur/build.myC/src 187s configfile: pyproject.toml 187s plugins: typeguard-4.4.2 188s collecting ... collected 136 items 188s 188s tests/test_FastaRecord.py::test_sequence_uppercase PASSED [ 0%] 188s tests/test_FastaRecord.py::test_long_names PASSED [ 1%] 188s tests/test_FastaRecord.py::test_issue_62 PASSED [ 2%] 188s tests/test_FastaRecord.py::test_unpadded_length PASSED [ 2%] 188s tests/test_FastaRecord.py::test_numpy_array PASSED [ 3%] 188s tests/test_FastaRecord_iter.py::test_fetch_whole_fasta PASSED [ 4%] 188s tests/test_FastaRecord_iter.py::test_line_len PASSED [ 5%] 188s tests/test_FastaRecord_iter.py::test_reverse_iter PASSED [ 5%] 188s tests/test_FastaVariant.py::test_fetch_variant SKIPPED (pysam not in...) [ 6%] 188s tests/test_FastaVariant.py::test_fetch_hom_variant SKIPPED (pysam no...) [ 7%] 188s tests/test_FastaVariant.py::test_fetch_het_variant SKIPPED (pysam no...) [ 8%] 188s tests/test_FastaVariant.py::test_fetch_chr_not_in_vcf SKIPPED (pysam...) [ 8%] 188s tests/test_FastaVariant.py::test_all_pos SKIPPED (pysam not installed.) [ 9%] 188s tests/test_FastaVariant.py::test_all_diff SKIPPED (pysam not installed.) [ 10%] 188s tests/test_Fasta_bgzip.py::test_build_issue_126 XFAIL [ 11%] 188s tests/test_Fasta_bgzip.py::test_integer_slice PASSED [ 11%] 188s tests/test_Fasta_bgzip.py::test_integer_index PASSED [ 12%] 188s tests/test_Fasta_bgzip.py::test_fetch_whole_fasta PASSED [ 13%] 188s tests/test_Fasta_bgzip.py::test_line_len PASSED [ 13%] 188s tests/test_Fasta_bgzip.py::test_mutable_bgzf PASSED [ 14%] 188s tests/test_Fasta_bgzip.py::test_long_names XFAIL [ 15%] 188s tests/test_Fasta_bgzip.py::test_fetch_whole_entry PASSED [ 16%] 188s tests/test_Fasta_bgzip.py::test_fetch_middle PASSED [ 16%] 188s tests/test_Fasta_bgzip.py::test_fetch_end PASSED [ 17%] 188s tests/test_Fasta_bgzip.py::test_fetch_border PASSED [ 18%] 188s tests/test_Fasta_bgzip.py::test_rev PASSED [ 19%] 188s tests/test_Fasta_bgzip.py::test_fetch_past_bounds PASSED [ 19%] 188s tests/test_Fasta_bgzip.py::test_fetch_negative PASSED [ 20%] 188s tests/test_Fasta_bgzip.py::test_fetch_reversed_coordinates PASSED [ 21%] 188s tests/test_Fasta_bgzip.py::test_fetch_keyerror PASSED [ 22%] 188s tests/test_Fasta_bgzip.py::test_blank_string PASSED [ 22%] 188s tests/test_Fasta_bgzip.py::test_slice_from_beginning PASSED [ 23%] 188s tests/test_Fasta_bgzip.py::test_slice_from_end PASSED [ 24%] 188s tests/test_Fasta_bgzip.py::test_issue_74_start PASSED [ 25%] 188s tests/test_Fasta_bgzip.py::test_issue_74_consistency PASSED [ 25%] 188s tests/test_Fasta_bgzip.py::test_issue_74_end_faidx PASSED [ 26%] 188s tests/test_Fasta_bgzip.py::test_issue_74_end_fasta PASSED [ 27%] 188s tests/test_Fasta_bgzip.py::test_issue_79_fix PASSED [ 27%] 188s tests/test_Fasta_bgzip.py::test_issue_79_fix_negate PASSED [ 28%] 188s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false PASSED [ 29%] 188s tests/test_Fasta_bgzip.py::test_issue_79_fix_one_based_false_negate PASSED [ 30%] 188s tests/test_Fasta_bgzip.py::test_fetch_border_padded PASSED [ 30%] 188s tests/test_Fasta_integer_index.py::test_integer_slice PASSED [ 31%] 188s tests/test_Fasta_integer_index.py::test_integer_index PASSED [ 32%] 188s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads PASSED [ 33%] 189s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_reads_and_writes PASSED [ 33%] 189s tests/test_Fasta_synchronization.py::TestFastaIntIndex::test_simultaneous_writes PASSED [ 34%] 189s tests/test_Path.py::test_Faidx PASSED [ 35%] 189s tests/test_Path.py::test_Fasta PASSED [ 36%] 189s tests/test_bio_seqio.py::test_fetch_whole_entry PASSED [ 36%] 189s tests/test_bio_seqio.py::test_slice_whole_entry PASSED [ 37%] 189s tests/test_bio_seqio.py::test_revcomp_whole_entry PASSED [ 38%] 189s tests/test_faidx.py::test_short_line_lengths PASSED [ 38%] 189s tests/test_faidx.py::test_fetch_whole_file PASSED [ 39%] 189s tests/test_faidx.py::test_split_entry PASSED [ 40%] 189s tests/test_faidx.py::test_fetch_error PASSED [ 41%] 189s tests/test_faidx.py::test_key_warning PASSED [ 41%] 189s tests/test_faidx.py::test_auto_strand PASSED [ 42%] 189s tests/test_faidx.py::test_regexp PASSED [ 43%] 189s tests/test_faidx.py::test_not_regexp PASSED [ 44%] 189s tests/test_faidx.py::test_not_regexp_multi PASSED [ 44%] 189s tests/test_feature_bounds_check.py::test_index_zero_length PASSED [ 45%] 189s tests/test_feature_bounds_check.py::test_fetch_zero_length PASSED [ 46%] 189s tests/test_feature_bounds_check.py::test_as_raw_zero_length_subsequence PASSED [ 47%] 189s tests/test_feature_bounds_check.py::test_zero_length_subsequence PASSED [ 47%] 189s tests/test_feature_bounds_check.py::test_fetch_whole_entry PASSED [ 48%] 189s tests/test_feature_bounds_check.py::test_fetch_middle PASSED [ 49%] 189s tests/test_feature_bounds_check.py::test_fetch_end PASSED [ 50%] 189s tests/test_feature_bounds_check.py::test_fetch_border PASSED [ 50%] 189s tests/test_feature_bounds_check.py::test_rev PASSED [ 51%] 189s tests/test_feature_bounds_check.py::test_fetch_past_bounds PASSED [ 52%] 189s tests/test_feature_bounds_check.py::test_fetch_negative PASSED [ 52%] 189s tests/test_feature_bounds_check.py::test_fetch_reversed_coordinates PASSED [ 53%] 189s tests/test_feature_bounds_check.py::test_fetch_keyerror PASSED [ 54%] 189s tests/test_feature_bounds_check.py::test_blank_string PASSED [ 55%] 189s tests/test_feature_bounds_check.py::test_slice_from_beginning PASSED [ 55%] 189s tests/test_feature_bounds_check.py::test_slice_from_end PASSED [ 56%] 189s tests/test_feature_bounds_check.py::test_issue_74_start PASSED [ 57%] 189s tests/test_feature_bounds_check.py::test_issue_74_consistency PASSED [ 58%] 189s tests/test_feature_bounds_check.py::test_issue_74_end_faidx PASSED [ 58%] 189s tests/test_feature_bounds_check.py::test_issue_74_end_fasta PASSED [ 59%] 189s tests/test_feature_bounds_check.py::test_issue_79_fix PASSED [ 60%] 189s tests/test_feature_bounds_check.py::test_issue_79_fix_negate PASSED [ 61%] 189s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false PASSED [ 61%] 189s tests/test_feature_bounds_check.py::test_issue_79_fix_one_based_false_negate PASSED [ 62%] 189s tests/test_feature_default_seq.py::test_fetch_border_padded PASSED [ 63%] 189s tests/test_feature_indexing.py::test_version_issue_206 PASSED [ 63%] 189s tests/test_feature_indexing.py::test_build PASSED [ 64%] 189s tests/test_feature_indexing.py::test_build_issue_141 PASSED [ 65%] 189s tests/test_feature_indexing.py::test_build_issue_111 PASSED [ 66%] 189s tests/test_feature_indexing.py::test_order PASSED [ 66%] 192s tests/test_feature_indexing.py::test_valgrind_short_lines PASSED [ 67%] 196s tests/test_feature_indexing.py::test_valgrind_long_lines PASSED [ 68%] 199s tests/test_feature_indexing.py::test_valgrind_blank_lines PASSED [ 69%] 201s tests/test_feature_indexing.py::test_reindex_on_modification PASSED [ 69%] 201s tests/test_feature_indexing.py::test_build_issue_83 PASSED [ 70%] 201s tests/test_feature_indexing.py::test_build_issue_96_fail_build_faidx PASSED [ 71%] 201s tests/test_feature_indexing.py::test_build_issue_96_fail_read_malformed_index_duplicate_key PASSED [ 72%] 201s tests/test_feature_indexing.py::test_read_back_index PASSED [ 72%] 201s tests/test_feature_indexing.py::test_issue_134_no_build_index PASSED [ 73%] 201s tests/test_feature_indexing.py::test_issue_144_no_defline PASSED [ 74%] 201s tests/test_feature_key_function.py::test_keys PASSED [ 75%] 201s tests/test_feature_key_function.py::test_key_function_by_dictionary_get_key PASSED [ 75%] 201s tests/test_feature_key_function.py::test_key_function_by_fetch PASSED [ 76%] 201s tests/test_feature_key_function.py::test_duplicated_keys PASSED [ 77%] 201s tests/test_feature_key_function.py::test_duplicated_keys_shortest PASSED [ 77%] 201s tests/test_feature_key_function.py::test_duplicated_keys_longest PASSED [ 78%] 201s tests/test_feature_read_ahead_buffer.py::test_buffer_false PASSED [ 79%] 201s tests/test_feature_read_ahead_buffer.py::test_buffer_true PASSED [ 80%] 201s tests/test_feature_read_ahead_buffer.py::test_buffer_exceed PASSED [ 80%] 201s tests/test_feature_read_ahead_buffer.py::test_bounds_error PASSED [ 81%] 201s tests/test_feature_read_ahead_buffer.py::test_buffer_value PASSED [ 82%] 201s tests/test_feature_sequence_as_raw.py::test_as_raw_false PASSED [ 83%] 201s tests/test_feature_sequence_as_raw.py::test_as_raw_true PASSED [ 83%] 201s tests/test_feature_sequence_as_raw.py::test_as_raw_false_error PASSED [ 84%] 201s tests/test_feature_sequence_as_raw.py::test_as_raw_true_error PASSED [ 85%] 201s tests/test_feature_sequence_as_raw.py::test_as_raw_type_when_blen_lt_0 PASSED [ 86%] 201s tests/test_feature_spliced_seq.py::test_split_seq PASSED [ 86%] 201s tests/test_feature_spliced_seq.py::test_get_seq_rc PASSED [ 87%] 201s tests/test_feature_split_char.py::test_keys PASSED [ 88%] 201s tests/test_feature_split_char.py::test_key_function_by_dictionary_get_key PASSED [ 88%] 201s tests/test_feature_split_char.py::test_key_function_by_fetch PASSED [ 89%] 201s tests/test_feature_split_char.py::test_stop PASSED [ 90%] 201s tests/test_fsspec.py::test_fsspec_fetch_whole_file SKIPPED (uncondit...) [ 91%] 201s tests/test_fsspec.py::test_fsspec_default_index SKIPPED (uncondition...) [ 91%] 201s tests/test_fsspec.py::test_fsspec_local_index SKIPPED (unconditional...) [ 92%] 201s tests/test_fsspec.py::test_fsspec_remote_index SKIPPED (unconditiona...) [ 93%] 201s tests/test_sequence_class.py::test_negate PASSED [ 94%] 201s tests/test_sequence_class.py::test_negate_metadata PASSED [ 94%] 201s tests/test_sequence_class.py::test_seq_invalid PASSED [ 95%] 201s tests/test_sequence_class.py::test_integer_index PASSED [ 96%] 201s tests/test_sequence_class.py::test_slice_index PASSED [ 97%] 201s tests/test_sequence_class.py::test_comp_invalid PASSED [ 97%] 201s tests/test_sequence_class.py::test_check_coordinates PASSED [ 98%] 201s tests/test_sequence_class.py::test_comp_valid PASSED [ 99%] 201s tests/test_sequence_class.py::test_comp_empty PASSED [100%] 201s 201s ================= 124 passed, 10 skipped, 2 xfailed in 13.92s ================== 202s autopkgtest [21:10:10]: test run-unit-test: -----------------------] 202s run-unit-test PASS 202s autopkgtest [21:10:10]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 202s autopkgtest [21:10:10]: test autodep8-python3: preparing testbed 270s autopkgtest [21:11:18]: testbed dpkg architecture: amd64 270s autopkgtest [21:11:18]: testbed apt version: 3.0.0 271s autopkgtest [21:11:19]: @@@@@@@@@@@@@@@@@@@@ test bed setup 271s autopkgtest [21:11:19]: testbed release detected to be: questing 272s autopkgtest [21:11:20]: updating testbed package index (apt update) 272s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 272s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 272s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 272s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 272s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1430 kB] 273s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [149 kB] 273s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 273s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [146 kB] 273s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [203 kB] 273s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [570 kB] 273s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1411 kB] 273s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.6 kB] 273s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 273s Fetched 4124 kB in 1s (3694 kB/s) 274s Reading package lists... 274s autopkgtest [21:11:22]: upgrading testbed (apt dist-upgrade and autopurge) 275s Reading package lists... 275s Building dependency tree... 275s Reading state information... 275s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 275s Starting 2 pkgProblemResolver with broken count: 0 275s Done 276s Entering ResolveByKeep 276s 276s Calculating upgrade... 276s The following packages will be upgraded: 276s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 276s libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient 276s sos 276s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 276s Need to get 2693 kB of archives. 276s After this operation, 104 kB disk space will be freed. 276s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 277s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 277s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 277s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 277s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 277s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 277s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 277s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 277s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 277s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 277s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 277s Preconfiguring packages ... 277s Fetched 2693 kB in 1s (4328 kB/s) 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 278s Preparing to unpack .../debianutils_5.22_amd64.deb ... 278s Unpacking debianutils (5.22) over (5.21) ... 278s Setting up debianutils (5.22) ... 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 278s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 278s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 278s Setting up libsepol2:amd64 (3.8.1-1) ... 278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 278s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 278s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 278s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 278s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 278s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 278s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 278s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 278s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 278s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 278s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 278s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 278s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 278s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 278s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 278s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 279s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 279s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 279s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 279s Setting up sos (4.9.1-1) ... 279s Setting up libnftnl11:amd64 (1.2.9-1) ... 279s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 281s Setting up python3-lazr.restfulclient (0.14.6-3) ... 281s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 281s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 281s Setting up libmbim-proxy (1.32.0-1) ... 281s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 281s Setting up libqmi-proxy (1.36.0-1) ... 281s Processing triggers for libc-bin (2.41-6ubuntu1) ... 281s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 281s Processing triggers for man-db (2.13.0-1) ... 283s Reading package lists... 283s Building dependency tree... 283s Reading state information... 284s Starting pkgProblemResolver with broken count: 0 284s Starting 2 pkgProblemResolver with broken count: 0 284s Done 284s Solving dependencies... 284s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 284s autopkgtest [21:11:32]: rebooting testbed after setup commands that affected boot 310s Reading package lists... 310s Building dependency tree... 310s Reading state information... 311s Starting pkgProblemResolver with broken count: 0 311s Starting 2 pkgProblemResolver with broken count: 0 311s Done 311s The following NEW packages will be installed: 311s python3-all python3-importlib-metadata python3-pyfaidx 311s 0 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. 311s Need to get 51.3 kB of archives. 311s After this operation, 223 kB of additional disk space will be used. 311s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B] 311s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 python3-importlib-metadata all 8.6.1-1 [20.7 kB] 311s Get:3 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyfaidx all 0.8.1.3-1 [29.7 kB] 312s Fetched 51.3 kB in 0s (148 kB/s) 312s Selecting previously unselected package python3-all. 312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 312s Preparing to unpack .../python3-all_3.13.3-1_amd64.deb ... 312s Unpacking python3-all (3.13.3-1) ... 312s Selecting previously unselected package python3-importlib-metadata. 312s Preparing to unpack .../python3-importlib-metadata_8.6.1-1_all.deb ... 312s Unpacking python3-importlib-metadata (8.6.1-1) ... 312s Selecting previously unselected package python3-pyfaidx. 312s Preparing to unpack .../python3-pyfaidx_0.8.1.3-1_all.deb ... 312s Unpacking python3-pyfaidx (0.8.1.3-1) ... 312s Setting up python3-importlib-metadata (8.6.1-1) ... 312s Setting up python3-all (3.13.3-1) ... 312s Setting up python3-pyfaidx (0.8.1.3-1) ... 312s Processing triggers for man-db (2.13.0-1) ... 315s autopkgtest [21:12:03]: test autodep8-python3: set -e ; for py in $(py3versions -r 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c "import pyfaidx; print(pyfaidx)" ; done 315s autopkgtest [21:12:03]: test autodep8-python3: [----------------------- 315s Testing with python3.13: 315s 315s autopkgtest [21:12:03]: test autodep8-python3: -----------------------] 316s autopkgtest [21:12:04]: test autodep8-python3: - - - - - - - - - - results - - - - - - - - - - 316s autodep8-python3 PASS (superficial) 316s autopkgtest [21:12:04]: @@@@@@@@@@@@@@@@@@@@ summary 316s run-unit-test PASS 316s autodep8-python3 PASS (superficial) 333s nova [W] Skipping flock for amd64 333s Creating nova instance adt-questing-amd64-python-pyfaidx-20250503-210648-juju-7f2275-prod-proposed-migration-environment-15-88396b25-6d23-4318-90ad-fe4190604510 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 333s nova [W] Timed out waiting for 1485e539-a85d-47bb-b008-3bd6fa9893fa to get deleted. 333s nova [W] Skipping flock for amd64 333s Creating nova instance adt-questing-amd64-python-pyfaidx-20250503-210648-juju-7f2275-prod-proposed-migration-environment-15-88396b25-6d23-4318-90ad-fe4190604510 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 333s nova [W] Timed out waiting for 22faac23-36c2-467e-948c-414453937f8b to get deleted.