0s autopkgtest [03:34:45]: starting date and time: 2025-05-03 03:34:45+0000 0s autopkgtest [03:34:45]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [03:34:45]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i4ix_z05/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:pyopengl --apt-upgrade pymol --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=pyopengl/3.1.9+dfsg-1.1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-4.secgroup --name adt-questing-amd64-pymol-20250503-033445-juju-7f2275-prod-proposed-migration-environment-15-363cbd78-3a89-467f-ab16-f0e89a8c89da --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 58s autopkgtest [03:35:42]: testbed dpkg architecture: amd64 58s autopkgtest [03:35:43]: testbed apt version: 3.0.0 58s autopkgtest [03:35:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 58s autopkgtest [03:35:43]: testbed release detected to be: None 59s autopkgtest [03:35:44]: updating testbed package index (apt update) 59s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 59s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 60s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 60s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 60s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [43.3 kB] 60s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1920 kB] 60s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [168 kB] 60s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [232 kB] 60s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [177 kB] 60s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1520 kB] 60s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [672 kB] 60s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [13.5 kB] 60s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [14.8 kB] 60s Fetched 4871 kB in 1s (4053 kB/s) 61s Reading package lists... 62s autopkgtest [03:35:47]: upgrading testbed (apt dist-upgrade and autopurge) 62s Reading package lists... 62s Building dependency tree... 62s Reading state information... 63s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 63s Starting 2 pkgProblemResolver with broken count: 0 63s Done 63s Entering ResolveByKeep 64s 64s Calculating upgrade... 64s The following packages will be upgraded: 64s ed fwupd htop libftdi1-2 libfwupd3 libnpth0t64 libnvme1t64 libsensors-config 64s libsensors5 liburcu8t64 mokutil nano usb.ids 64s 13 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 64s Need to get 6529 kB of archives. 64s After this operation, 209 kB disk space will be freed. 64s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libnpth0t64 amd64 1.8-3 [9294 B] 64s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 ed amd64 1.21.1-1 [57.2 kB] 64s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors-config all 1:3.6.2-2 [6756 B] 65s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libsensors5 amd64 1:3.6.2-2 [28.7 kB] 65s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liburcu8t64 amd64 0.15.2-2 [63.9 kB] 65s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 nano amd64 8.4-1 [290 kB] 65s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 usb.ids all 2025.04.01-1 [223 kB] 65s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fwupd amd64 2.0.8-3 [5396 kB] 65s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfwupd3 amd64 2.0.8-3 [136 kB] 65s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 htop amd64 3.4.1-4 [175 kB] 65s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libftdi1-2 amd64 1.5-10 [30.7 kB] 65s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libnvme1t64 amd64 1.13-2 [84.2 kB] 65s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 mokutil amd64 0.7.2-1 [27.9 kB] 65s Fetched 6529 kB in 1s (8151 kB/s) 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 66s Preparing to unpack .../libnpth0t64_1.8-3_amd64.deb ... 66s Unpacking libnpth0t64:amd64 (1.8-3) over (1.8-2) ... 66s Setting up libnpth0t64:amd64 (1.8-3) ... 66s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 66s Preparing to unpack .../00-ed_1.21.1-1_amd64.deb ... 66s Unpacking ed (1.21.1-1) over (1.21-1) ... 66s Preparing to unpack .../01-libsensors-config_1%3a3.6.2-2_all.deb ... 66s Unpacking libsensors-config (1:3.6.2-2) over (1:3.6.0-10) ... 66s Preparing to unpack .../02-libsensors5_1%3a3.6.2-2_amd64.deb ... 66s Unpacking libsensors5:amd64 (1:3.6.2-2) over (1:3.6.0-10) ... 66s Preparing to unpack .../03-liburcu8t64_0.15.2-2_amd64.deb ... 66s Unpacking liburcu8t64:amd64 (0.15.2-2) over (0.15.1-1) ... 66s Preparing to unpack .../04-nano_8.4-1_amd64.deb ... 66s Unpacking nano (8.4-1) over (8.3-1) ... 66s Preparing to unpack .../05-usb.ids_2025.04.01-1_all.deb ... 66s Unpacking usb.ids (2025.04.01-1) over (2025.01.14-1) ... 66s Preparing to unpack .../06-fwupd_2.0.8-3_amd64.deb ... 66s Unpacking fwupd (2.0.8-3) over (2.0.7-1) ... 66s Preparing to unpack .../07-libfwupd3_2.0.8-3_amd64.deb ... 66s Unpacking libfwupd3:amd64 (2.0.8-3) over (2.0.7-1) ... 66s Preparing to unpack .../08-htop_3.4.1-4_amd64.deb ... 66s Unpacking htop (3.4.1-4) over (3.4.0-2) ... 66s Preparing to unpack .../09-libftdi1-2_1.5-10_amd64.deb ... 66s Unpacking libftdi1-2:amd64 (1.5-10) over (1.5-8build1) ... 66s Preparing to unpack .../10-libnvme1t64_1.13-2_amd64.deb ... 66s Unpacking libnvme1t64 (1.13-2) over (1.11.1-2) ... 66s Preparing to unpack .../11-mokutil_0.7.2-1_amd64.deb ... 66s Unpacking mokutil (0.7.2-1) over (0.6.0-2build3) ... 66s Setting up liburcu8t64:amd64 (0.15.2-2) ... 66s Setting up mokutil (0.7.2-1) ... 66s Setting up htop (3.4.1-4) ... 66s Setting up libsensors-config (1:3.6.2-2) ... 66s Installing new version of config file /etc/sensors3.conf ... 66s Setting up libfwupd3:amd64 (2.0.8-3) ... 66s Setting up libftdi1-2:amd64 (1.5-10) ... 66s Setting up libnvme1t64 (1.13-2) ... 66s Setting up ed (1.21.1-1) ... 66s Setting up usb.ids (2025.04.01-1) ... 66s Setting up libsensors5:amd64 (1:3.6.2-2) ... 66s Setting up nano (8.4-1) ... 66s Installing new version of config file /etc/nanorc ... 66s Setting up fwupd (2.0.8-3) ... 67s fwupd-refresh.service is a disabled or a static unit not running, not starting it. 67s fwupd.service is a disabled or a static unit not running, not starting it. 67s Processing triggers for man-db (2.13.0-1) ... 68s Processing triggers for dbus (1.16.2-2ubuntu1) ... 68s Processing triggers for install-info (7.1.1-1) ... 68s Processing triggers for libc-bin (2.41-6ubuntu1) ... 68s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Starting pkgProblemResolver with broken count: 0 69s Starting 2 pkgProblemResolver with broken count: 0 69s Done 69s Solving dependencies... 69s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s autopkgtest [03:35:55]: rebooting testbed after setup commands that affected boot 93s autopkgtest [03:36:18]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 95s autopkgtest [03:36:20]: @@@@@@@@@@@@@@@@@@@@ apt-source pymol 99s Get:1 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (dsc) [2307 B] 99s Get:2 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (tar) [22.0 MB] 99s Get:3 http://ftpmaster.internal/ubuntu questing/universe pymol 3.1.0+dfsg-1 (diff) [57.9 kB] 99s gpgv: Signature made Mon Mar 17 08:37:43 2025 UTC 99s gpgv: using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0 99s gpgv: Can't check signature: No public key 99s dpkg-source: warning: cannot verify inline signature for ./pymol_3.1.0+dfsg-1.dsc: no acceptable signature found 100s autopkgtest [03:36:25]: testing package pymol version 3.1.0+dfsg-1 101s autopkgtest [03:36:26]: build not needed 104s autopkgtest [03:36:29]: test command1: preparing testbed 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s Starting pkgProblemResolver with broken count: 0 105s Starting 2 pkgProblemResolver with broken count: 0 105s Done 105s The following NEW packages will be installed: 105s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libaec0 105s libavahi-client3 libavahi-common-data libavahi-common3 libblas3 libcups2t64 105s libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 libfontconfig1 105s libgbm1 libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 libglu1-mesa 105s libglut3.12 libglvnd0 libglx-mesa0 libglx0 libgomp1 libgraphite2-3 105s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6 libinput-bin libinput10 105s libjpeg-turbo8 libjpeg8 liblapack3 libmd4c0 libmtdev1t64 libnetcdf22 105s libopengl0 libpciaccess0 libpcre2-16-0 libqt5core5t64 libqt5dbus5t64 105s libqt5designer5 libqt5gui5t64 libqt5help5 libqt5network5t64 libqt5opengl5t64 105s libqt5printsupport5t64 libqt5sql5t64 libqt5test5t64 libqt5widgets5t64 105s libqt5xml5t64 libsm6 libsz2 libvulkan1 libwacom-common libwacom9 105s libwayland-client0 libwayland-server0 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 105s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 105s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 105s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 105s libxi6 libxkbcommon-x11-0 libxrender1 libxshmfence1 libxxf86vm1 105s mesa-libgallium pymol pymol-data python3-legacy-cgi python3-numpy 105s python3-numpy-dev python3-opengl python3-pymol python3-pyqt5 105s python3-pyqt5.qtopengl python3-pyqt5.sip x11-common 106s 0 upgraded, 96 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 52.4 MB of archives. 106s After this operation, 204 MB of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 106s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 106s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 106s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 106s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 106s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 106s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 106s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 106s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 106s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 106s Get:11 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 106s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libavahi-common-data amd64 0.8-16ubuntu2 [31.0 kB] 106s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libavahi-common3 amd64 0.8-16ubuntu2 [23.6 kB] 106s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libavahi-client3 amd64 0.8-16ubuntu2 [27.5 kB] 106s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libcups2t64 amd64 2.4.12-0ubuntu1 [292 kB] 106s Get:16 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 106s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 106s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 106s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 106s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 106s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 106s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 106s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 106s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 106s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 106s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 106s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 107s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 107s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 107s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 107s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libegl-mesa0 amd64 25.0.3-1ubuntu2 [136 kB] 107s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 107s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 107s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 107s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 107s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 107s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 107s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 107s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 107s Get:40 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 107s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 107s Get:42 http://ftpmaster.internal/ubuntu questing/universe amd64 libglut3.12 amd64 3.4.0-4 [111 kB] 107s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 107s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 107s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 107s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 107s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 107s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 107s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 107s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 107s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom-common all 2.14.0-1 [103 kB] 107s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 107s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB] 107s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 107s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libinput10 amd64 1.27.1-1 [155 kB] 107s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 107s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 107s Get:58 http://ftpmaster.internal/ubuntu questing/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 107s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 107s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 107s Get:61 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 107s Get:62 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 107s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 107s Get:64 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 107s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB] 107s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 107s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 107s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 107s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 107s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 107s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 107s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 107s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 107s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 107s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 107s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 107s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 107s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 107s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 107s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-4ubuntu1 [124 kB] 107s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5designer5 amd64 5.15.15-6build1 [2827 kB] 107s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-4ubuntu1 [122 kB] 107s Get:83 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5help5 amd64 5.15.15-6build1 [162 kB] 107s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-4ubuntu1 [150 kB] 107s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-4ubuntu1 [208 kB] 107s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-4ubuntu1 [149 kB] 107s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 python3-legacy-cgi all 2.6.2-1 [16.6 kB] 107s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 107s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 107s Get:90 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-opengl all 3.1.9+dfsg-1.1 [631 kB] 107s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5.sip amd64 12.17.0-1build1 [76.5 kB] 107s Get:92 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-2 [2725 kB] 107s Get:93 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-2 [128 kB] 107s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 pymol-data all 3.1.0+dfsg-1 [1394 kB] 107s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pymol amd64 3.1.0+dfsg-1 [4171 kB] 107s Get:96 http://ftpmaster.internal/ubuntu questing/universe amd64 pymol all 3.1.0+dfsg-1 [126 kB] 108s Fetched 52.4 MB in 2s (23.0 MB/s) 108s Selecting previously unselected package python3-numpy-dev:amd64. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 108s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 108s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 108s Selecting previously unselected package libblas3:amd64. 108s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 108s Unpacking libblas3:amd64 (3.12.1-2) ... 108s Selecting previously unselected package libgfortran5:amd64. 108s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 108s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 108s Selecting previously unselected package liblapack3:amd64. 108s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 108s Unpacking liblapack3:amd64 (3.12.1-2) ... 108s Selecting previously unselected package python3-numpy. 108s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 108s Unpacking python3-numpy (1:2.2.3+ds-5) ... 108s Selecting previously unselected package fonts-dejavu-mono. 108s Preparing to unpack .../05-fonts-dejavu-mono_2.37-8_all.deb ... 108s Unpacking fonts-dejavu-mono (2.37-8) ... 109s Selecting previously unselected package fonts-dejavu-core. 109s Preparing to unpack .../06-fonts-dejavu-core_2.37-8_all.deb ... 109s Unpacking fonts-dejavu-core (2.37-8) ... 109s Selecting previously unselected package fontconfig-config. 109s Preparing to unpack .../07-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 109s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 109s Selecting previously unselected package libfontconfig1:amd64. 109s Preparing to unpack .../08-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 109s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 109s Selecting previously unselected package fontconfig. 109s Preparing to unpack .../09-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 109s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 109s Selecting previously unselected package libaec0:amd64. 109s Preparing to unpack .../10-libaec0_1.1.3-1_amd64.deb ... 109s Unpacking libaec0:amd64 (1.1.3-1) ... 109s Selecting previously unselected package libavahi-common-data:amd64. 109s Preparing to unpack .../11-libavahi-common-data_0.8-16ubuntu2_amd64.deb ... 109s Unpacking libavahi-common-data:amd64 (0.8-16ubuntu2) ... 109s Selecting previously unselected package libavahi-common3:amd64. 109s Preparing to unpack .../12-libavahi-common3_0.8-16ubuntu2_amd64.deb ... 109s Unpacking libavahi-common3:amd64 (0.8-16ubuntu2) ... 109s Selecting previously unselected package libavahi-client3:amd64. 109s Preparing to unpack .../13-libavahi-client3_0.8-16ubuntu2_amd64.deb ... 109s Unpacking libavahi-client3:amd64 (0.8-16ubuntu2) ... 109s Selecting previously unselected package libcups2t64:amd64. 109s Preparing to unpack .../14-libcups2t64_2.4.12-0ubuntu1_amd64.deb ... 109s Unpacking libcups2t64:amd64 (2.4.12-0ubuntu1) ... 109s Selecting previously unselected package libdouble-conversion3:amd64. 109s Preparing to unpack .../15-libdouble-conversion3_3.3.1-1_amd64.deb ... 109s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ... 109s Selecting previously unselected package libpciaccess0:amd64. 109s Preparing to unpack .../16-libpciaccess0_0.17-3build1_amd64.deb ... 109s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 109s Selecting previously unselected package libdrm-intel1:amd64. 109s Preparing to unpack .../17-libdrm-intel1_2.4.124-2_amd64.deb ... 109s Unpacking libdrm-intel1:amd64 (2.4.124-2) ... 109s Selecting previously unselected package libwayland-server0:amd64. 109s Preparing to unpack .../18-libwayland-server0_1.23.1-3_amd64.deb ... 109s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 109s Selecting previously unselected package libx11-xcb1:amd64. 109s Preparing to unpack .../19-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 109s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 109s Selecting previously unselected package libxcb-dri3-0:amd64. 109s Preparing to unpack .../20-libxcb-dri3-0_1.17.0-2_amd64.deb ... 109s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 109s Selecting previously unselected package libxcb-present0:amd64. 109s Preparing to unpack .../21-libxcb-present0_1.17.0-2_amd64.deb ... 109s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 109s Selecting previously unselected package libxcb-randr0:amd64. 109s Preparing to unpack .../22-libxcb-randr0_1.17.0-2_amd64.deb ... 109s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 109s Selecting previously unselected package libxcb-sync1:amd64. 109s Preparing to unpack .../23-libxcb-sync1_1.17.0-2_amd64.deb ... 109s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 109s Selecting previously unselected package libxcb-xfixes0:amd64. 109s Preparing to unpack .../24-libxcb-xfixes0_1.17.0-2_amd64.deb ... 109s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 109s Selecting previously unselected package libxshmfence1:amd64. 109s Preparing to unpack .../25-libxshmfence1_1.3.3-1_amd64.deb ... 109s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 109s Selecting previously unselected package mesa-libgallium:amd64. 109s Preparing to unpack .../26-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ... 109s Unpacking mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 109s Selecting previously unselected package libgbm1:amd64. 109s Preparing to unpack .../27-libgbm1_25.0.3-1ubuntu2_amd64.deb ... 109s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ... 109s Selecting previously unselected package libwayland-client0:amd64. 109s Preparing to unpack .../28-libwayland-client0_1.23.1-3_amd64.deb ... 109s Unpacking libwayland-client0:amd64 (1.23.1-3) ... 109s Selecting previously unselected package libxcb-shm0:amd64. 109s Preparing to unpack .../29-libxcb-shm0_1.17.0-2_amd64.deb ... 109s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 110s Selecting previously unselected package libegl-mesa0:amd64. 110s Preparing to unpack .../30-libegl-mesa0_25.0.3-1ubuntu2_amd64.deb ... 110s Unpacking libegl-mesa0:amd64 (25.0.3-1ubuntu2) ... 110s Selecting previously unselected package libvulkan1:amd64. 110s Preparing to unpack .../31-libvulkan1_1.4.304.0-1_amd64.deb ... 110s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 110s Selecting previously unselected package libgl1-mesa-dri:amd64. 110s Preparing to unpack .../32-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ... 110s Unpacking libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 110s Selecting previously unselected package libglvnd0:amd64. 110s Preparing to unpack .../33-libglvnd0_1.7.0-1build1_amd64.deb ... 110s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 110s Selecting previously unselected package libxcb-glx0:amd64. 110s Preparing to unpack .../34-libxcb-glx0_1.17.0-2_amd64.deb ... 110s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 110s Selecting previously unselected package libxxf86vm1:amd64. 110s Preparing to unpack .../35-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 110s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 110s Selecting previously unselected package libglx-mesa0:amd64. 110s Preparing to unpack .../36-libglx-mesa0_25.0.3-1ubuntu2_amd64.deb ... 110s Unpacking libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 110s Selecting previously unselected package libglx0:amd64. 110s Preparing to unpack .../37-libglx0_1.7.0-1build1_amd64.deb ... 110s Unpacking libglx0:amd64 (1.7.0-1build1) ... 110s Selecting previously unselected package libgl1:amd64. 110s Preparing to unpack .../38-libgl1_1.7.0-1build1_amd64.deb ... 110s Unpacking libgl1:amd64 (1.7.0-1build1) ... 110s Selecting previously unselected package libglew2.2:amd64. 110s Preparing to unpack .../39-libglew2.2_2.2.0-4build1_amd64.deb ... 110s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 110s Selecting previously unselected package libxi6:amd64. 110s Preparing to unpack .../40-libxi6_2%3a1.8.2-1_amd64.deb ... 110s Unpacking libxi6:amd64 (2:1.8.2-1) ... 110s Selecting previously unselected package libglut3.12:amd64. 110s Preparing to unpack .../41-libglut3.12_3.4.0-4_amd64.deb ... 110s Unpacking libglut3.12:amd64 (3.4.0-4) ... 110s Selecting previously unselected package libgomp1:amd64. 110s Preparing to unpack .../42-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 110s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 110s Selecting previously unselected package libgraphite2-3:amd64. 110s Preparing to unpack .../43-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 110s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 110s Selecting previously unselected package libharfbuzz0b:amd64. 110s Preparing to unpack .../44-libharfbuzz0b_10.2.0-1_amd64.deb ... 110s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 110s Selecting previously unselected package libsz2:amd64. 110s Preparing to unpack .../45-libsz2_1.1.3-1_amd64.deb ... 110s Unpacking libsz2:amd64 (1.1.3-1) ... 110s Selecting previously unselected package libhdf5-310:amd64. 110s Preparing to unpack .../46-libhdf5-310_1.14.5+repack-3_amd64.deb ... 110s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 110s Selecting previously unselected package libhdf5-hl-310:amd64. 110s Preparing to unpack .../47-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 110s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 110s Selecting previously unselected package x11-common. 110s Preparing to unpack .../48-x11-common_1%3a7.7+23ubuntu4_all.deb ... 110s Unpacking x11-common (1:7.7+23ubuntu4) ... 110s Selecting previously unselected package libice6:amd64. 110s Preparing to unpack .../49-libice6_2%3a1.1.1-1_amd64.deb ... 110s Unpacking libice6:amd64 (2:1.1.1-1) ... 110s Selecting previously unselected package libwacom-common. 110s Preparing to unpack .../50-libwacom-common_2.14.0-1_all.deb ... 110s Unpacking libwacom-common (2.14.0-1) ... 110s Selecting previously unselected package libwacom9:amd64. 110s Preparing to unpack .../51-libwacom9_2.14.0-1_amd64.deb ... 110s Unpacking libwacom9:amd64 (2.14.0-1) ... 110s Selecting previously unselected package libinput-bin. 110s Preparing to unpack .../52-libinput-bin_1.27.1-1_amd64.deb ... 110s Unpacking libinput-bin (1.27.1-1) ... 110s Selecting previously unselected package libmtdev1t64:amd64. 110s Preparing to unpack .../53-libmtdev1t64_1.1.7-1_amd64.deb ... 110s Unpacking libmtdev1t64:amd64 (1.1.7-1) ... 110s Selecting previously unselected package libinput10:amd64. 110s Preparing to unpack .../54-libinput10_1.27.1-1_amd64.deb ... 110s Unpacking libinput10:amd64 (1.27.1-1) ... 110s Selecting previously unselected package libjpeg-turbo8:amd64. 110s Preparing to unpack .../55-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 110s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 110s Selecting previously unselected package libjpeg8:amd64. 110s Preparing to unpack .../56-libjpeg8_8c-2ubuntu11_amd64.deb ... 110s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 110s Selecting previously unselected package libmd4c0:amd64. 110s Preparing to unpack .../57-libmd4c0_0.5.2-2_amd64.deb ... 110s Unpacking libmd4c0:amd64 (0.5.2-2) ... 110s Selecting previously unselected package libnetcdf22:amd64. 110s Preparing to unpack .../58-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 110s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 110s Selecting previously unselected package libpcre2-16-0:amd64. 110s Preparing to unpack .../59-libpcre2-16-0_10.45-1_amd64.deb ... 110s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 111s Selecting previously unselected package libqt5core5t64:amd64. 111s Preparing to unpack .../60-libqt5core5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5dbus5t64:amd64. 111s Preparing to unpack .../61-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libegl1:amd64. 111s Preparing to unpack .../62-libegl1_1.7.0-1build1_amd64.deb ... 111s Unpacking libegl1:amd64 (1.7.0-1build1) ... 111s Selecting previously unselected package libqt5network5t64:amd64. 111s Preparing to unpack .../63-libqt5network5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libsm6:amd64. 111s Preparing to unpack .../64-libsm6_2%3a1.2.4-1_amd64.deb ... 111s Unpacking libsm6:amd64 (2:1.2.4-1) ... 111s Selecting previously unselected package libxcb-icccm4:amd64. 111s Preparing to unpack .../65-libxcb-icccm4_0.4.2-1_amd64.deb ... 111s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 111s Selecting previously unselected package libxcb-util1:amd64. 111s Preparing to unpack .../66-libxcb-util1_0.4.1-1_amd64.deb ... 111s Unpacking libxcb-util1:amd64 (0.4.1-1) ... 111s Selecting previously unselected package libxcb-image0:amd64. 111s Preparing to unpack .../67-libxcb-image0_0.4.0-2build1_amd64.deb ... 111s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 111s Selecting previously unselected package libxcb-keysyms1:amd64. 111s Preparing to unpack .../68-libxcb-keysyms1_0.4.1-1_amd64.deb ... 111s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ... 111s Selecting previously unselected package libxcb-render0:amd64. 111s Preparing to unpack .../69-libxcb-render0_1.17.0-2_amd64.deb ... 111s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 111s Selecting previously unselected package libxcb-render-util0:amd64. 111s Preparing to unpack .../70-libxcb-render-util0_0.3.10-1_amd64.deb ... 111s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ... 111s Selecting previously unselected package libxcb-shape0:amd64. 111s Preparing to unpack .../71-libxcb-shape0_1.17.0-2_amd64.deb ... 111s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 111s Selecting previously unselected package libxcb-xinerama0:amd64. 111s Preparing to unpack .../72-libxcb-xinerama0_1.17.0-2_amd64.deb ... 111s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 111s Selecting previously unselected package libxcb-xinput0:amd64. 111s Preparing to unpack .../73-libxcb-xinput0_1.17.0-2_amd64.deb ... 111s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 111s Selecting previously unselected package libxcb-xkb1:amd64. 111s Preparing to unpack .../74-libxcb-xkb1_1.17.0-2_amd64.deb ... 111s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 111s Selecting previously unselected package libxkbcommon-x11-0:amd64. 111s Preparing to unpack .../75-libxkbcommon-x11-0_1.7.0-2_amd64.deb ... 111s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ... 111s Selecting previously unselected package libxrender1:amd64. 111s Preparing to unpack .../76-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 111s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 111s Selecting previously unselected package libqt5gui5t64:amd64. 111s Preparing to unpack .../77-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5widgets5t64:amd64. 111s Preparing to unpack .../78-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5xml5t64:amd64. 111s Preparing to unpack .../79-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5designer5:amd64. 111s Preparing to unpack .../80-libqt5designer5_5.15.15-6build1_amd64.deb ... 111s Unpacking libqt5designer5:amd64 (5.15.15-6build1) ... 111s Selecting previously unselected package libqt5sql5t64:amd64. 111s Preparing to unpack .../81-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5sql5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5help5:amd64. 111s Preparing to unpack .../82-libqt5help5_5.15.15-6build1_amd64.deb ... 111s Unpacking libqt5help5:amd64 (5.15.15-6build1) ... 111s Selecting previously unselected package libqt5opengl5t64:amd64. 111s Preparing to unpack .../83-libqt5opengl5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5printsupport5t64:amd64. 111s Preparing to unpack .../84-libqt5printsupport5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package libqt5test5t64:amd64. 111s Preparing to unpack .../85-libqt5test5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 111s Unpacking libqt5test5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 111s Selecting previously unselected package python3-legacy-cgi. 111s Preparing to unpack .../86-python3-legacy-cgi_2.6.2-1_all.deb ... 111s Unpacking python3-legacy-cgi (2.6.2-1) ... 111s Selecting previously unselected package libopengl0:amd64. 111s Preparing to unpack .../87-libopengl0_1.7.0-1build1_amd64.deb ... 111s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 111s Selecting previously unselected package libglu1-mesa:amd64. 111s Preparing to unpack .../88-libglu1-mesa_9.0.2-1.1build1_amd64.deb ... 111s Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ... 111s Selecting previously unselected package python3-opengl. 111s Preparing to unpack .../89-python3-opengl_3.1.9+dfsg-1.1_all.deb ... 111s Unpacking python3-opengl (3.1.9+dfsg-1.1) ... 112s Selecting previously unselected package python3-pyqt5.sip. 112s Preparing to unpack .../90-python3-pyqt5.sip_12.17.0-1build1_amd64.deb ... 112s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 112s Selecting previously unselected package python3-pyqt5. 112s Preparing to unpack .../91-python3-pyqt5_5.15.11+dfsg-2_amd64.deb ... 112s Unpacking python3-pyqt5 (5.15.11+dfsg-2) ... 112s Selecting previously unselected package python3-pyqt5.qtopengl. 112s Preparing to unpack .../92-python3-pyqt5.qtopengl_5.15.11+dfsg-2_amd64.deb ... 112s Unpacking python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 112s Selecting previously unselected package pymol-data. 112s Preparing to unpack .../93-pymol-data_3.1.0+dfsg-1_all.deb ... 112s Unpacking pymol-data (3.1.0+dfsg-1) ... 112s Selecting previously unselected package python3-pymol. 112s Preparing to unpack .../94-python3-pymol_3.1.0+dfsg-1_amd64.deb ... 112s Unpacking python3-pymol (3.1.0+dfsg-1) ... 112s Selecting previously unselected package pymol. 112s Preparing to unpack .../95-pymol_3.1.0+dfsg-1_all.deb ... 112s Unpacking pymol (3.1.0+dfsg-1) ... 112s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 112s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 112s Setting up libwayland-server0:amd64 (1.23.1-3) ... 112s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 112s Setting up libpciaccess0:amd64 (0.17-3build1) ... 112s Setting up libdouble-conversion3:amd64 (3.3.1-1) ... 112s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 112s Setting up libxi6:amd64 (2:1.8.2-1) ... 112s Setting up libxcb-xinput0:amd64 (1.17.0-2) ... 112s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 112s Setting up libxcb-render0:amd64 (1.17.0-2) ... 112s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 112s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 112s Setting up libdrm-intel1:amd64 (2.4.124-2) ... 112s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ... 112s Setting up libxcb-shape0:amd64 (1.17.0-2) ... 112s Setting up x11-common (1:7.7+23ubuntu4) ... 113s Setting up libxcb-render-util0:amd64 (0.3.10-1) ... 113s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 113s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 113s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 113s Setting up libpcre2-16-0:amd64 (10.45-1) ... 113s Setting up libaec0:amd64 (1.1.3-1) ... 113s Setting up libopengl0:amd64 (1.7.0-1build1) ... 113s Setting up libxcb-util1:amd64 (0.4.1-1) ... 113s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 113s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 113s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 113s Setting up libxcb-present0:amd64 (1.17.0-2) ... 113s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 113s Setting up libblas3:amd64 (3.12.1-2) ... 113s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 113s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 113s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 113s Setting up libavahi-common-data:amd64 (0.8-16ubuntu2) ... 113s Setting up pymol-data (3.1.0+dfsg-1) ... 113s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ... 113s Setting up fonts-dejavu-mono (2.37-8) ... 113s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 113s Setting up fonts-dejavu-core (2.37-8) ... 113s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 113s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 113s Setting up libvulkan1:amd64 (1.4.304.0-1) ... 113s Setting up python3-legacy-cgi (2.6.2-1) ... 113s Setting up python3-pyqt5.sip (12.17.0-1build1) ... 113s Setting up libmtdev1t64:amd64 (1.1.7-1) ... 113s Setting up libxshmfence1:amd64 (1.3.3-1) ... 113s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 113s Setting up libqt5sql5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 113s Setting up libmd4c0:amd64 (0.5.2-2) ... 113s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 113s Setting up libglu1-mesa:amd64 (9.0.2-1.1build1) ... 113s Setting up libsz2:amd64 (1.1.3-1) ... 113s Setting up libwacom-common (2.14.0-1) ... 113s Setting up libwayland-client0:amd64 (1.23.1-3) ... 113s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 113s Setting up libice6:amd64 (2:1.1.1-1) ... 113s Setting up mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 113s Setting up liblapack3:amd64 (3.12.1-2) ... 113s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 113s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 113s Setting up libgbm1:amd64 (25.0.3-1ubuntu2) ... 113s Setting up libwacom9:amd64 (2.14.0-1) ... 113s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 113s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 113s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 113s Setting up libavahi-common3:amd64 (0.8-16ubuntu2) ... 113s Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 113s Setting up libqt5test5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 113s Setting up libinput-bin (1.27.1-1) ... 113s Setting up libegl-mesa0:amd64 (25.0.3-1ubuntu2) ... 113s Setting up python3-numpy (1:2.2.3+ds-5) ... 115s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 115s Setting up libegl1:amd64 (1.7.0-1build1) ... 115s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 115s Setting up libsm6:amd64 (2:1.2.4-1) ... 115s Setting up libavahi-client3:amd64 (0.8-16ubuntu2) ... 115s Setting up libinput10:amd64 (1.27.1-1) ... 115s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 115s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 117s Regenerating fonts cache... done. 117s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 117s Setting up libglx0:amd64 (1.7.0-1build1) ... 117s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 117s Setting up libgl1:amd64 (1.7.0-1build1) ... 117s Setting up libglut3.12:amd64 (3.4.0-4) ... 117s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 117s Setting up libcups2t64:amd64 (2.4.12-0ubuntu1) ... 117s Setting up python3-opengl (3.1.9+dfsg-1.1) ... 117s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 117s |\ |\ 118s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 118s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 118s Setting up libqt5help5:amd64 (5.15.15-6build1) ... 118s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 118s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 118s Setting up libqt5designer5:amd64 (5.15.15-6build1) ... 118s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 118s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 118s Setting up python3-pymol (3.1.0+dfsg-1) ... 119s Setting up pymol (3.1.0+dfsg-1) ... 119s Processing triggers for libc-bin (2.41-6ubuntu1) ... 119s Processing triggers for man-db (2.13.0-1) ... 120s Processing triggers for udev (257.4-1ubuntu3) ... 121s autopkgtest [03:36:46]: test command1: sh debian/tests/call-pymol-scripts examples/ \ "(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(scenes2movie)|(ss_xfer)|(multiclip_ray)|(tkwindow)|(importing)" 121s autopkgtest [03:36:46]: test command1: [----------------------- 121s Search pymol scripts in /tmp/autopkgtest.q9w8EI/build.i7X/src/examples... 121s Processing new directory /tmp/autopkgtest.q9w8EI/build.i7X/src/examples 121s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/chempy/generate_amber.py'... 122s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/chempy/generate_mmff.py'... 122s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/area_diff.pml'... 122s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/build_peptide.py'... 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/contact.pml 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/dali.py 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/density.pml 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/groel_es.pml 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/multiclip_ray.pml 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/packing.pml 122s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/packsurf.pml 123s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/ref_frame.pml 123s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/ribosome.pml 123s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/scenes2movie.pml 123s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/seq_match_sele.pml'... 126s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/ss_xfer.pml 126s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/symsph.py'... 127s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/brick01.py'... 127s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo01.py'... 127s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo02.py'... 130s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo03.py'... 133s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo04.py'... 134s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo05.py'... 134s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo06.py'... 136s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo07.py'... 136s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo08.py'... 136s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_3Dtext01.py'... 137s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_axes.py'... 137s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_label_hack.py'... 140s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_plane.py'... 140s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/chempy_model01.py'... 140s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/chempy_model02.py'... 140s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/chempy_model03.py'... 144s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/click_ordered_list.py'... 144s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/count_molecules.py'... 144s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/extend_demo01.py'... 144s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/gl01.py'... 144s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/gl02.py'... 145s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/gl03.py'... 148s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/importing.py 148s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/link_demo.py'... 148s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/membrane.py'... 149s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/mutate01.pml'... 149s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/mutate02.py'... 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/my_ext_gui.py'... 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/particle01.py'... 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/particle02.py'... 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/pick_wiz.py'... 152s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/povray01.py 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/scenes_to_movie01.pml'... 152s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/sd_annotate.pml 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/sele_wiz.py'... 152s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/start_pymol.py 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/syncmol.py'... 152s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/tkwindow.py 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/webgui01.py'... 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/webgui02.py'... 152s /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 152s mo = re.search("molid\=([A-Z0-9]+)",self.path) 152s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/xmlrpc01.py 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/xmlrpc02.py'... 152s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching/launch_demo.py'... 153s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching/launch_viewer1.py'... 153s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching/launch_viewer2.py'... 153s Processing new directory /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/chempy 153s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/chempy/generate_amber.py'... 153s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/chempy/generate_mmff.py'... 153s Processing new directory /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook 153s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/area_diff.pml'... 154s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/build_peptide.py'... 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/contact.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/dali.py 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/density.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/groel_es.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/multiclip_ray.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/packing.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/packsurf.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/ref_frame.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/ribosome.pml 154s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/scenes2movie.pml 154s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/seq_match_sele.pml'... 155s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/ss_xfer.pml 155s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/cookbook/symsph.py'... 156s Processing new directory /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel 156s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/brick01.py'... 156s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo01.py'... 156s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo02.py'... 159s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo03.py'... 162s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo04.py'... 163s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo05.py'... 163s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo06.py'... 164s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo07.py'... 164s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo08.py'... 164s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_3Dtext01.py'... 164s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_axes.py'... 164s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_label_hack.py'... 167s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/cgo_plane.py'... 168s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/chempy_model01.py'... 168s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/chempy_model02.py'... 168s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/chempy_model03.py'... 171s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/click_ordered_list.py'... 171s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/count_molecules.py'... 172s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/extend_demo01.py'... 172s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/gl01.py'... 172s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/gl02.py'... 172s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/gl03.py'... 176s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/importing.py 176s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/link_demo.py'... 176s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/membrane.py'... 176s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/mutate01.pml'... 177s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/mutate02.py'... 178s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/my_ext_gui.py'... 178s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/particle01.py'... 178s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/particle02.py'... 179s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/pick_wiz.py'... 179s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/povray01.py 179s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/scenes_to_movie01.pml'... 179s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/sd_annotate.pml 179s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/sele_wiz.py'... 179s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/start_pymol.py 179s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/syncmol.py'... 179s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/tkwindow.py 179s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/webgui01.py'... 180s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/webgui02.py'... 180s /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 180s mo = re.search("molid\=([A-Z0-9]+)",self.path) 180s Skip /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/xmlrpc01.py 180s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/devel/xmlrpc02.py'... 180s Processing new directory /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching 180s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching/launch_demo.py'... 180s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching/launch_viewer1.py'... 180s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/examples/launching/launch_viewer2.py'... 181s autopkgtest [03:37:46]: test command1: -----------------------] 181s autopkgtest [03:37:46]: test command1: - - - - - - - - - - results - - - - - - - - - - 181s command1 PASS (superficial) 182s autopkgtest [03:37:47]: test command2: preparing testbed 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 183s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 183s autopkgtest [03:37:48]: test command2: sh debian/tests/call-pymol-scripts data/demo 183s autopkgtest [03:37:48]: test command2: [----------------------- 184s Search pymol scripts in /tmp/autopkgtest.q9w8EI/build.i7X/src/data/demo... 184s Processing new directory /tmp/autopkgtest.q9w8EI/build.i7X/src/data/demo 184s Run 'pymol -c /tmp/autopkgtest.q9w8EI/build.i7X/src/data/demo/cgo03.py'... 187s autopkgtest [03:37:52]: test command2: -----------------------] 188s command2 PASS (superficial) 188s autopkgtest [03:37:53]: test command2: - - - - - - - - - - results - - - - - - - - - - 188s autopkgtest [03:37:53]: test command3: preparing testbed 188s Reading package lists... 189s Building dependency tree... 189s Reading state information... 189s Starting pkgProblemResolver with broken count: 0 189s Starting 2 pkgProblemResolver with broken count: 0 189s Done 189s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 190s autopkgtest [03:37:55]: test command3: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples \ "(cookbook/)|(xmlrpc01)|(sd_annotate)|(povray01)|(tkwindow)|(importing)" 190s autopkgtest [03:37:55]: test command3: [----------------------- 190s Search pymol scripts in /usr/share/pymol/examples... 190s Processing new directory /usr/share/pymol/examples 190s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 190s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 190s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 190s Skip /usr/share/pymol/examples/cookbook/contact.pml 190s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 190s Skip /usr/share/pymol/examples/cookbook/packing.pml 190s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 190s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 190s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 190s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 190s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 190s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 191s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 191s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 194s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 197s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 198s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 199s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 202s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 203s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 206s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 206s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 206s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 207s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 211s Skip /usr/share/pymol/examples/devel/importing.py 211s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 211s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 213s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 214s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 214s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 214s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 214s Skip /usr/share/pymol/examples/devel/tkwindow.py 214s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 215s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 215s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 215s mo = re.search("molid\=([A-Z0-9]+)",self.path) 215s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 215s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 215s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 215s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 215s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 216s Processing new directory /usr/share/pymol/examples/chempy 216s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_amber.py'... 216s Run 'pymol -c /usr/share/pymol/examples/chempy/generate_mmff.py'... 216s Processing new directory /usr/share/pymol/examples/cookbook 216s Skip /usr/share/pymol/examples/cookbook/area_diff.pml 216s Skip /usr/share/pymol/examples/cookbook/contact.pml 216s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 216s Skip /usr/share/pymol/examples/cookbook/packing.pml 216s Skip /usr/share/pymol/examples/cookbook/packsurf.pml 216s Skip /usr/share/pymol/examples/cookbook/ref_frame.pml 216s Skip /usr/share/pymol/examples/cookbook/scenes2movie.pml 216s Skip /usr/share/pymol/examples/cookbook/seq_match_sele.pml 216s Skip /usr/share/pymol/examples/cookbook/ss_xfer.pml 216s Processing new directory /usr/share/pymol/examples/devel 216s Run 'pymol -c /usr/share/pymol/examples/devel/brick01.py'... 216s Run 'pymol -c /usr/share/pymol/examples/devel/cgo01.py'... 216s Run 'pymol -c /usr/share/pymol/examples/devel/cgo02.py'... 219s Run 'pymol -c /usr/share/pymol/examples/devel/cgo03.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/cgo04.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/cgo05.py'... 223s Run 'pymol -c /usr/share/pymol/examples/devel/cgo06.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo07.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo08.py'... 224s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_3Dtext01.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_axes.py'... 225s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_label_hack.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/cgo_plane.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model01.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model02.py'... 228s Run 'pymol -c /usr/share/pymol/examples/devel/chempy_model03.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/click_ordered_list.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/count_molecules.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/extend_demo01.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/gl01.py'... 232s Run 'pymol -c /usr/share/pymol/examples/devel/gl02.py'... 233s Run 'pymol -c /usr/share/pymol/examples/devel/gl03.py'... 236s Skip /usr/share/pymol/examples/devel/importing.py 236s Run 'pymol -c /usr/share/pymol/examples/devel/link_demo.py'... 236s Run 'pymol -c /usr/share/pymol/examples/devel/membrane.py'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/mutate01.pml'... 237s Run 'pymol -c /usr/share/pymol/examples/devel/mutate02.py'... 238s Run 'pymol -c /usr/share/pymol/examples/devel/my_ext_gui.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/particle01.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/particle02.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/pick_wiz.py'... 239s Run 'pymol -c /usr/share/pymol/examples/devel/scenes_to_movie01.pml'... 240s Skip /usr/share/pymol/examples/devel/sd_annotate.pml 240s Run 'pymol -c /usr/share/pymol/examples/devel/sele_wiz.py'... 240s Run 'pymol -c /usr/share/pymol/examples/devel/syncmol.py'... 240s Skip /usr/share/pymol/examples/devel/tkwindow.py 240s Run 'pymol -c /usr/share/pymol/examples/devel/webgui01.py'... 240s Run 'pymol -c /usr/share/pymol/examples/devel/webgui02.py'... 240s /usr/share/pymol/examples/devel/webgui02.py:161: SyntaxWarning: invalid escape sequence '\=' 240s mo = re.search("molid\=([A-Z0-9]+)",self.path) 240s Skip /usr/share/pymol/examples/devel/xmlrpc01.py 240s Run 'pymol -c /usr/share/pymol/examples/devel/xmlrpc02.py'... 240s Processing new directory /usr/share/pymol/examples/launching 240s Run 'pymol -c /usr/share/pymol/examples/launching/launch_demo.py'... 241s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer1.py'... 241s Run 'pymol -c /usr/share/pymol/examples/launching/launch_viewer2.py'... 241s autopkgtest [03:38:46]: test command3: -----------------------] 242s command3 PASS (superficial) 242s autopkgtest [03:38:47]: test command3: - - - - - - - - - - results - - - - - - - - - - 242s autopkgtest [03:38:47]: test command4: preparing testbed 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 243s Starting pkgProblemResolver with broken count: 0 243s Starting 2 pkgProblemResolver with broken count: 0 243s Done 243s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 244s autopkgtest [03:38:49]: test command4: sh debian/tests/call-pymol-scripts /usr/share/pymol/examples/cookbook multiclip_ray 244s autopkgtest [03:38:49]: test command4: [----------------------- 244s Search pymol scripts in /usr/share/pymol/examples/cookbook... 244s Processing new directory /usr/share/pymol/examples/cookbook 244s Run 'pymol -c /usr/share/pymol/examples/cookbook/area_diff.pml'... 245s Run 'pymol -c /usr/share/pymol/examples/cookbook/contact.pml'... 247s Skip /usr/share/pymol/examples/cookbook/multiclip_ray.pml 247s Run 'pymol -c /usr/share/pymol/examples/cookbook/packing.pml'... 248s Run 'pymol -c /usr/share/pymol/examples/cookbook/packsurf.pml'... 272s Run 'pymol -c /usr/share/pymol/examples/cookbook/ref_frame.pml'... 277s Run 'pymol -c /usr/share/pymol/examples/cookbook/scenes2movie.pml'... 278s Run 'pymol -c /usr/share/pymol/examples/cookbook/seq_match_sele.pml'... 279s Run 'pymol -c /usr/share/pymol/examples/cookbook/ss_xfer.pml'... 281s autopkgtest [03:39:26]: test command4: -----------------------] 281s autopkgtest [03:39:26]: test command4: - - - - - - - - - - results - - - - - - - - - - 281s command4 PASS (superficial) 282s autopkgtest [03:39:27]: test command5: preparing testbed 282s Reading package lists... 282s Building dependency tree... 282s Reading state information... 282s Starting pkgProblemResolver with broken count: 0 283s Starting 2 pkgProblemResolver with broken count: 0 283s Done 283s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 284s autopkgtest [03:39:29]: test command5: (cd /usr/share/pymol/examples/devel/ && pymol -c sd_annotate.pml) 284s autopkgtest [03:39:29]: test command5: [----------------------- 284s PyMOL(TM) Molecular Graphics System, Version 3.1.0. 284s Copyright (c) Schrodinger, LLC. 284s All Rights Reserved. 284s 284s Created by Warren L. DeLano, Ph.D. 284s 284s PyMOL is user-supported open-source software. Although some versions 284s are freely available, PyMOL is not in the public domain. 284s 284s If PyMOL is helpful in your work or study, then please volunteer 284s support for our ongoing efforts to create open and affordable scientific 284s software by purchasing a PyMOL Maintenance and/or Support subscription. 284s 284s More information can be found at "http://www.pymol.org". 284s 284s Enter "help" for a list of commands. 284s Enter "help " for information on a specific command. 284s 284s Hit ESC anytime to toggle between text and graphics. 284s 284s Setting: wizard_prompt_mode set to 3. 284s Detected 2 CPU cores. Enabled multithreaded rendering. 284s PyMOL>from pymol.wizard.annotation import load_annotated_sdf 284s PyMOL>cmd.extend('load_annotated_sdf',load_annotated_sdf) 284s PyMOL>wizard annotation 284s PyMOL>set wizard_prompt_mode,3 284s PyMOL>load_annotated_sdf demo.sdf 284s HBA ['[1, 25, 26, 34]\n'] 284s HBD ['[20]\n'] 284s ACD_NUMBER ['MFCD02681585\n'] 284s SCORE ['-222.044\n'] 284s MOLID ['MFCD02681585\n'] 284s HBA ['[1, 21]\n'] 284s HBD ['[]\n'] 284s ACD_NUMBER ['MFCD01567969\n'] 284s SCORE ['-219.984\n'] 284s MOLID ['MFCD01567969\n'] 284s HBA ['[1, 24]\n'] 284s HBD ['[10, 22]\n'] 284s ACD_NUMBER ['MFCD00023789\n'] 284s SCORE ['-219.911\n'] 284s MOLID ['MFCD00023789\n'] 284s HBA ['[1, 11]\n'] 284s HBD ['[3]\n'] 284s ACD_NUMBER ['MFCD02579443\n'] 284s SCORE ['-219.769\n'] 284s MOLID ['MFCD02579443\n'] 284s HBA ['[1, 11]\n'] 284s HBD ['[9]\n'] 284s ACD_NUMBER ['MFCD02579410\n'] 284s SCORE ['-214.809\n'] 284s MOLID ['MFCD02579410\n'] 284s HBA ['[1, 20, 22, 27, 32]\n'] 284s HBD ['[10, 20]\n'] 284s ACD_NUMBER ['MFCD02579135\n'] 284s SCORE ['-213.630\n'] 284s MOLID ['MFCD02579135\n'] 284s HBA ['[1, 11, 14, 21]\n'] 284s HBD ['[]\n'] 284s ACD_NUMBER ['MFCD02681468\n'] 284s SCORE ['-213.462\n'] 284s MOLID ['MFCD02681468\n'] 284s HBA ['[1, 13, 14, 29]\n'] 284s HBD ['[]\n'] 284s ACD_NUMBER ['MFCD00141070\n'] 284s SCORE ['-213.240\n'] 284s MOLID ['MFCD00141070\n'] 284s HBA ['[1, 8]\n'] 284s HBD ['[]\n'] 284s ACD_NUMBER ['MFCD02983625\n'] 284s SCORE ['-211.422\n'] 284s MOLID ['MFCD02983625\n'] 284s HBA ['[1, 11]\n'] 284s HBD ['[3, 12]\n'] 284s ACD_NUMBER ['MFCD00115818\n'] 284s SCORE ['-210.482\n'] 284s MOLID ['MFCD00115818\n'] 284s autopkgtest [03:39:29]: test command5: -----------------------] 285s command5 PASS (superficial) 285s autopkgtest [03:39:30]: test command5: - - - - - - - - - - results - - - - - - - - - - 285s autopkgtest [03:39:30]: @@@@@@@@@@@@@@@@@@@@ summary 285s command1 PASS (superficial) 285s command2 PASS (superficial) 285s command3 PASS (superficial) 285s command4 PASS (superficial) 285s command5 PASS (superficial) 316s nova [W] Skipping flock for amd64 316s Creating nova instance adt-questing-amd64-pymol-20250503-033445-juju-7f2275-prod-proposed-migration-environment-15-363cbd78-3a89-467f-ab16-f0e89a8c89da from image adt/ubuntu-questing-amd64-server-20250502.img (UUID 9956ea44-e870-4bd8-8ad1-dc5f8a09f1f9)... 316s nova [W] Timed out waiting for 3eb6baca-0a84-48b1-bcd9-5858aa42c5b1 to get deleted.