0s autopkgtest [17:23:36]: starting date and time: 2025-05-06 17:23:36+0000 0s autopkgtest [17:23:36]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [17:23:36]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dkq52aq4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:uncertainties --apt-upgrade pymatgen --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=uncertainties/3.2.3-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-4.secgroup --name adt-questing-amd64-pymatgen-20250506-172336-juju-7f2275-prod-proposed-migration-environment-23-344783ce-b215-4b54-8836-05a334f5ad09 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 65s autopkgtest [17:24:41]: testbed dpkg architecture: amd64 65s autopkgtest [17:24:41]: testbed apt version: 3.0.0 65s autopkgtest [17:24:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s autopkgtest [17:24:41]: testbed release detected to be: None 66s autopkgtest [17:24:42]: updating testbed package index (apt update) 67s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 67s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 67s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 67s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 67s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [580 kB] 67s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [67.8 kB] 67s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB] 67s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [94.4 kB] 67s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [137 kB] 67s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [656 kB] 67s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [262 kB] 67s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [18.4 kB] 67s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [5028 B] 67s Fetched 1958 kB in 1s (2175 kB/s) 68s Reading package lists... 69s autopkgtest [17:24:45]: upgrading testbed (apt dist-upgrade and autopurge) 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 69s Starting 2 pkgProblemResolver with broken count: 0 69s Done 70s Entering ResolveByKeep 70s 70s Calculating upgrade... 70s The following packages will be upgraded: 70s gcc-15-base libatomic1 libdebuginfod-common libdebuginfod1t64 libdw1t64 70s libelf1t64 libgcc-s1 libperl5.40 libstdc++6 lto-disabled-list perl perl-base 70s perl-modules-5.40 python3-dbus sensible-utils 70s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s Need to get 11.7 MB of archives. 70s After this operation, 25.6 kB of additional disk space will be used. 70s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 71s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 perl amd64 5.40.1-3 [262 kB] 71s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 71s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 71s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libdebuginfod-common all 0.193-1 [15.6 kB] 71s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libatomic1 amd64 15.1.0-2ubuntu1 [10.5 kB] 71s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-15-base amd64 15.1.0-2ubuntu1 [54.6 kB] 71s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-s1 amd64 15.1.0-2ubuntu1 [78.1 kB] 71s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++6 amd64 15.1.0-2ubuntu1 [812 kB] 71s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sensible-utils all 0.0.25 [25.0 kB] 71s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libdebuginfod1t64 amd64 0.193-1 [21.3 kB] 71s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libdw1t64 amd64 0.193-1 [283 kB] 71s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libelf1t64 amd64 0.193-1 [58.6 kB] 71s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dbus amd64 1.4.0-1 [102 kB] 71s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 lto-disabled-list all 58 [12.4 kB] 72s Preconfiguring packages ... 72s Fetched 11.7 MB in 1s (11.4 MB/s) 72s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 72s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 72s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2) ... 72s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 72s Unpacking perl (5.40.1-3) over (5.40.1-2) ... 72s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 72s Unpacking perl-base (5.40.1-3) over (5.40.1-2) ... 73s Setting up perl-base (5.40.1-3) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 73s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 73s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2) ... 73s Preparing to unpack .../libdebuginfod-common_0.193-1_all.deb ... 73s Unpacking libdebuginfod-common (0.193-1) over (0.192-4ubuntu1) ... 73s Preparing to unpack .../libatomic1_15.1.0-2ubuntu1_amd64.deb ... 73s Unpacking libatomic1:amd64 (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 73s Preparing to unpack .../gcc-15-base_15.1.0-2ubuntu1_amd64.deb ... 73s Unpacking gcc-15-base:amd64 (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 73s Setting up gcc-15-base:amd64 (15.1.0-2ubuntu1) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 73s Preparing to unpack .../libgcc-s1_15.1.0-2ubuntu1_amd64.deb ... 73s Unpacking libgcc-s1:amd64 (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 73s Setting up libgcc-s1:amd64 (15.1.0-2ubuntu1) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 73s Preparing to unpack .../libstdc++6_15.1.0-2ubuntu1_amd64.deb ... 73s Unpacking libstdc++6:amd64 (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 73s Setting up libstdc++6:amd64 (15.1.0-2ubuntu1) ... 73s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 73s Preparing to unpack .../0-sensible-utils_0.0.25_all.deb ... 73s Unpacking sensible-utils (0.0.25) over (0.0.24) ... 73s Preparing to unpack .../1-libdebuginfod1t64_0.193-1_amd64.deb ... 73s Unpacking libdebuginfod1t64:amd64 (0.193-1) over (0.192-4ubuntu1) ... 73s Preparing to unpack .../2-libdw1t64_0.193-1_amd64.deb ... 73s Unpacking libdw1t64:amd64 (0.193-1) over (0.192-4ubuntu1) ... 73s Preparing to unpack .../3-libelf1t64_0.193-1_amd64.deb ... 73s Unpacking libelf1t64:amd64 (0.193-1) over (0.192-4ubuntu1) ... 73s Preparing to unpack .../4-python3-dbus_1.4.0-1_amd64.deb ... 73s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ... 74s Preparing to unpack .../5-lto-disabled-list_58_all.deb ... 74s Unpacking lto-disabled-list (58) over (57) ... 74s Setting up python3-dbus (1.4.0-1) ... 74s Setting up lto-disabled-list (58) ... 74s Setting up libdebuginfod-common (0.193-1) ... 74s Setting up libelf1t64:amd64 (0.193-1) ... 74s Setting up libdw1t64:amd64 (0.193-1) ... 74s Setting up libatomic1:amd64 (15.1.0-2ubuntu1) ... 74s Setting up perl-modules-5.40 (5.40.1-3) ... 74s Setting up sensible-utils (0.0.25) ... 74s Setting up libdebuginfod1t64:amd64 (0.193-1) ... 74s Setting up libperl5.40:amd64 (5.40.1-3) ... 74s Setting up perl (5.40.1-3) ... 74s Processing triggers for man-db (2.13.1-1) ... 75s Processing triggers for libc-bin (2.41-6ubuntu1) ... 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s Starting pkgProblemResolver with broken count: 0 76s Starting 2 pkgProblemResolver with broken count: 0 76s Done 76s Solving dependencies... 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 79s autopkgtest [17:24:55]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 79s autopkgtest [17:24:55]: @@@@@@@@@@@@@@@@@@@@ apt-source pymatgen 82s Get:1 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (dsc) [3207 B] 82s Get:2 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (tar) [9896 kB] 82s Get:3 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (diff) [17.1 kB] 82s gpgv: Signature made Thu Feb 27 10:55:17 2025 UTC 82s gpgv: using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA 82s gpgv: issuer "dparsons@debian.org" 82s gpgv: Can't check signature: No public key 82s dpkg-source: warning: cannot verify inline signature for ./pymatgen_2025.2.18+dfsg1-4.dsc: no acceptable signature found 82s autopkgtest [17:24:58]: testing package pymatgen version 2025.2.18+dfsg1-4 83s autopkgtest [17:24:59]: build not needed 86s autopkgtest [17:25:02]: test test-pymatgen: preparing testbed 86s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Starting pkgProblemResolver with broken count: 0 87s Starting 2 pkgProblemResolver with broken count: 0 87s Done 88s The following NEW packages will be installed: 88s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 88s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 88s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 88s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 88s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 88s fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 88s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 88s libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3 88s libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 88s libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 88s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 88s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 88s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 88s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 88s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins 88s libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 libinchi1.07 88s libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 88s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc 88s libjs-underscore libjson-perl libjsoncpp26 liblapack3 liblbfgsb0 liblcms2-2 88s liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3 88s libmtdev1t64 libmunge2 libnetcdf22 libogg0 libopenbabel7 libopengl0 88s libopenjp2-7 libopenmpi40 libpciaccess0 libpcre2-16-0 libpixman-1-0 88s libpmix2t64 libproj25 libpsm-infinipath1 libpsm2-2 libpython3-all-dev 88s libpython3-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 88s libqt5gui5t64 libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0 88s librdmacm1t64 libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2 88s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 88s libtiff6 libtk8.6 libtool libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt 88s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 88s libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 88s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 88s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 88s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 88s libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 88s libxss1 libxxf86vm1 libze1 m4 mesa-libgallium mpi-default-bin 88s ocl-icd-libopencl1 openmpi-bin openmpi-common packmol po-debconf proj-data 88s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 88s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 88s python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson 88s python3-build python3-cftime python3-contourpy python3-cycler 88s python3-decorator python3-defusedxml python3-dev python3-dnspython 88s python3-docutils python3-email-validator python3-fastjsonschema 88s python3-fonttools python3-frozendict python3-fs python3-h5py 88s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 88s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 88s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 88s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 88s python3-numpy python3-numpy-dev python3-openbabel python3-palettable 88s python3-pandas python3-pandas-lib python3-phonopy python3-pil 88s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 88s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 88s python3-pyproject-hooks python3-pytest python3-pytz python3-roman 88s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 88s python3-snowballstemmer python3-soupsieve python3-spglib python3-sphinx 88s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 88s python3-tabulate python3-tenacity python3-tk python3-toml python3-tqdm 88s python3-traitlets python3-tz python3-ufolib2 python3-uncertainties 88s python3-unicodedata2 python3-vtk9 python3-wheel python3.13-dev python3.13-tk 88s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 88s x11-common xml-core zlib1g-dev 88s 0 upgraded, 293 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 552 MB of archives. 88s After this operation, 2083 MB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-lato all 2.015-1 [2781 kB] 88s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [147 kB] 88s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 88s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15.1.0-2ubuntu1 [924 kB] 88s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 89s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5383 kB] 89s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 m4 amd64 1.4.19-8 [248 kB] 89s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 89s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 autotools-dev all 20240727.1 [43.4 kB] 89s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 89s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 autopoint all 0.23.1-2 [619 kB] 89s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 89s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 89s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 89s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 89s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 89s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 89s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 89s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 89s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 89s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 89s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 89s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 89s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 89s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 89s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 90s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 90s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 90s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 90s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15.1.0-2ubuntu1 [47.1 kB] 90s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15.1.0-2ubuntu1 [151 kB] 90s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15.1.0-2ubuntu1 [29.5 kB] 90s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15.1.0-2ubuntu1 [3070 kB] 90s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15.1.0-2ubuntu1 [1360 kB] 90s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15.1.0-2ubuntu1 [2758 kB] 90s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15.1.0-2ubuntu1 [1210 kB] 90s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15.1.0-2ubuntu1 [1685 kB] 90s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15.1.0-2ubuntu1 [153 kB] 90s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 90s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 91s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 91s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 91s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 91s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 91s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB] 91s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB] 91s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 91s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 91s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 91s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu2 [2676 kB] 91s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 91s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libtool all 2.5.4-4 [168 kB] 91s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 dh-autoreconf all 20 [16.1 kB] 91s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 91s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 91s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 91s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 91s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 dwz amd64 0.15-1build6 [115 kB] 91s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 gettext amd64 0.23.1-2 [1017 kB] 91s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 91s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 91s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 91s Get:63 http://ftpmaster.internal/ubuntu questing/universe amd64 dh-python all 6.20250414 [119 kB] 91s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 91s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 xml-core all 0.19 [20.3 kB] 91s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 91s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 91s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 91s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 91s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 91s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 91s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 91s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 92s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 92s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 92s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 92s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 93s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.2ubuntu1 [260 kB] 93s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 93s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 93s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 93s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 93s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 93s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 93s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 93s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 93s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 93s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [7968 B] 93s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 93s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 93s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 93s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 93s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 93s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 93s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 93s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 93s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 93s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libegl-mesa0 amd64 25.0.3-1ubuntu2 [136 kB] 93s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 93s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libexpat1-dev amd64 2.7.1-1 [148 kB] 93s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 93s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 94s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 94s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 94s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.309.0-1 [145 kB] 94s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 94s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 94s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 94s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 94s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 94s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 94s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 94s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 94s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 95s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 95s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 95s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 95s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 96s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 96s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-4 [175 kB] 96s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 96s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 96s Get:123 http://ftpmaster.internal/ubuntu questing/universe amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [702 kB] 96s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom-common all 2.14.0-1 [103 kB] 96s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 96s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libinput-bin amd64 1.28.1-1 [23.6 kB] 96s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 96s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libinput10 amd64 1.28.1-1 [144 kB] 96s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 96s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 96s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 97s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 97s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 97s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 97s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 97s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 97s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 97s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 97s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 97s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 97s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 97s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 97s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 97s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 98s Get:145 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 98s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB] 99s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 99s Get:148 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 99s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 libze1 amd64 1.20.6-1 [515 kB] 99s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 99s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-4 [21.6 kB] 99s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.7-1 [712 kB] 100s Get:153 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 100s Get:154 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 100s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 100s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 101s Get:157 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 101s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.6.0-1 [7955 kB] 104s Get:159 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 104s Get:160 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 104s Get:161 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 104s Get:162 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 104s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.6.0-1 [1475 kB] 104s Get:164 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 105s Get:165 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3.13-dev amd64 3.13.3-1 [5507 kB] 106s Get:166 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-dev amd64 3.13.3-1 [10.8 kB] 106s Get:167 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-all-dev amd64 3.13.3-1 [906 B] 106s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 106s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 106s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 106s Get:171 http://ftpmaster.internal/ubuntu questing/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 106s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 106s Get:173 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 106s Get:174 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 106s Get:175 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 106s Get:176 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 106s Get:177 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 106s Get:178 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 106s Get:179 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 106s Get:180 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 106s Get:181 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 106s Get:182 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 106s Get:183 http://ftpmaster.internal/ubuntu questing/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 106s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 107s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 107s Get:186 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 107s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 libsymspg2 amd64 2.6.0-3 [210 kB] 107s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 107s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 107s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 107s Get:191 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 107s Get:192 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 107s Get:193 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 107s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB] 109s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-4ubuntu1 [182 kB] 109s Get:196 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 109s Get:197 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 109s Get:198 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB] 109s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 109s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 109s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 packmol amd64 1:21.0.1-1 [122 kB] 109s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 110s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 110s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 110s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 110s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 110s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 pybuild-plugin-pyproject all 6.20250414 [1728 B] 110s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 pymatgen-test-files all 2025.2.18-1 [214 MB] 118s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 118s Get:210 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 118s Get:211 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 118s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 python-pymatgen-doc all 2025.2.18+dfsg1-4 [1186 kB] 118s Get:213 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B] 118s Get:214 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-dev amd64 3.13.3-1 [508 kB] 118s Get:215 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dev amd64 3.13.3-1 [26.7 kB] 118s Get:216 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all-dev amd64 3.13.3-1 [904 B] 118s Get:217 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 118s Get:218 http://ftpmaster.internal/ubuntu questing/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 118s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB] 119s Get:220 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-spglib amd64 2.6.0-3 [32.1 kB] 119s Get:221 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 119s Get:222 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 119s Get:223 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-tk amd64 3.13.3-1 [107 kB] 119s Get:224 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tk amd64 3.13.3-1 [9856 B] 119s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B] 119s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 119s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 119s Get:228 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB] 119s Get:229 http://ftpmaster.internal/ubuntu questing/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 119s Get:230 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 119s Get:231 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lxml amd64 5.4.0-1 [1342 kB] 119s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lz4 amd64 4.4.0+dfsg-2 [26.6 kB] 119s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 119s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 119s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 119s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB] 119s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 120s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB] 120s Get:239 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB] 120s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-matplotlib amd64 3.8.3-7build1 [17.4 MB] 120s Get:241 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ase all 3.24.0-1 [1787 kB] 120s Get:242 http://ftpmaster.internal/ubuntu questing/main amd64 python3-soupsieve all 2.7-1 [33.5 kB] 120s Get:243 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bs4 all 4.13.4-1 [137 kB] 120s Get:244 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bson all 4.10.1-5build1 [42.9 kB] 120s Get:245 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cftime amd64 1.6.4-2 [233 kB] 120s Get:246 http://ftpmaster.internal/ubuntu questing/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB] 120s Get:247 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 120s Get:248 http://ftpmaster.internal/ubuntu questing/main amd64 python3-roman all 5.0-1 [10.3 kB] 120s Get:249 http://ftpmaster.internal/ubuntu questing/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 120s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 121s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 121s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-frozendict all 2.4.6-1 [13.2 kB] 121s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB] 121s Get:254 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py all 3.13.0-1 [7978 B] 121s Get:255 http://ftpmaster.internal/ubuntu questing/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 121s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 121s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 121s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 121s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 121s Get:260 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 121s Get:261 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pytz all 2025.1-3 [162 kB] 121s Get:262 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4949 kB] 121s Get:263 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas all 2.2.3+dfsg-9 [3112 kB] 121s Get:264 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic-core amd64 2.27.2-1build1 [1622 kB] 121s Get:265 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB] 121s Get:266 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-tqdm all 4.67.1-3 [91.6 kB] 121s Get:267 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1build1 [164 kB] 121s Get:268 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 121s Get:269 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-monty all 2025.3.3-1 [40.4 kB] 121s Get:270 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 121s Get:271 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-netcdf4 amd64 1.7.2-1build4 [667 kB] 121s Get:272 http://ftpmaster.internal/ubuntu questing/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 121s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB] 121s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 121s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-phonopy amd64 2.38.1-1 [325 kB] 121s Get:276 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tz all 2025.1-3 [1866 B] 121s Get:277 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 121s Get:278 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 122s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 122s Get:280 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 122s Get:281 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 122s Get:282 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-uncertainties all 3.2.3-1 [51.5 kB] 122s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pymatgen amd64 2025.2.18+dfsg1-4 [2663 kB] 122s Get:284 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest all 8.3.5-1 [252 kB] 122s Get:285 http://ftpmaster.internal/ubuntu questing/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 122s Get:286 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-common all 8.1.3-5 [663 kB] 122s Get:287 http://ftpmaster.internal/ubuntu questing/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 122s Get:288 http://ftpmaster.internal/ubuntu questing/main amd64 python3-sphinx all 8.1.3-5 [474 kB] 122s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 122s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 122s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 122s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpi4py amd64 4.0.3-3ubuntu1 [836 kB] 122s Get:293 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-4ubuntu1 [7839 kB] 123s Fetched 552 MB in 34s (16.1 MB/s) 123s Selecting previously unselected package fonts-lato. 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 123s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 123s Unpacking fonts-lato (2.015-1) ... 123s Selecting previously unselected package python3-numpy-dev:amd64. 123s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... 123s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... 123s Selecting previously unselected package libblas3:amd64. 123s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... 123s Unpacking libblas3:amd64 (3.12.1-2) ... 123s Selecting previously unselected package libgfortran5:amd64. 123s Preparing to unpack .../003-libgfortran5_15.1.0-2ubuntu1_amd64.deb ... 123s Unpacking libgfortran5:amd64 (15.1.0-2ubuntu1) ... 123s Selecting previously unselected package liblapack3:amd64. 123s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... 123s Unpacking liblapack3:amd64 (3.12.1-2) ... 123s Selecting previously unselected package python3-numpy. 123s Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... 123s Unpacking python3-numpy (1:2.2.4+ds-1) ... 123s Selecting previously unselected package m4. 123s Preparing to unpack .../006-m4_1.4.19-8_amd64.deb ... 123s Unpacking m4 (1.4.19-8) ... 123s Selecting previously unselected package autoconf. 123s Preparing to unpack .../007-autoconf_2.72-3ubuntu1_all.deb ... 123s Unpacking autoconf (2.72-3ubuntu1) ... 123s Selecting previously unselected package autotools-dev. 123s Preparing to unpack .../008-autotools-dev_20240727.1_all.deb ... 123s Unpacking autotools-dev (20240727.1) ... 123s Selecting previously unselected package automake. 123s Preparing to unpack .../009-automake_1%3a1.17-3ubuntu1_all.deb ... 123s Unpacking automake (1:1.17-3ubuntu1) ... 123s Selecting previously unselected package autopoint. 123s Preparing to unpack .../010-autopoint_0.23.1-2_all.deb ... 123s Unpacking autopoint (0.23.1-2) ... 123s Selecting previously unselected package libtcl8.6:amd64. 123s Preparing to unpack .../011-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 123s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 123s Selecting previously unselected package fonts-dejavu-mono. 123s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8_all.deb ... 123s Unpacking fonts-dejavu-mono (2.37-8) ... 124s Selecting previously unselected package fonts-dejavu-core. 124s Preparing to unpack .../013-fonts-dejavu-core_2.37-8_all.deb ... 124s Unpacking fonts-dejavu-core (2.37-8) ... 124s Selecting previously unselected package fontconfig-config. 124s Preparing to unpack .../014-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 124s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 124s Selecting previously unselected package libfontconfig1:amd64. 124s Preparing to unpack .../015-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 124s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 124s Selecting previously unselected package libxrender1:amd64. 124s Preparing to unpack .../016-libxrender1_1%3a0.9.12-1_amd64.deb ... 124s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 124s Selecting previously unselected package libxft2:amd64. 124s Preparing to unpack .../017-libxft2_2.3.6-1build1_amd64.deb ... 124s Unpacking libxft2:amd64 (2.3.6-1build1) ... 124s Selecting previously unselected package x11-common. 124s Preparing to unpack .../018-x11-common_1%3a7.7+23ubuntu4_all.deb ... 124s Unpacking x11-common (1:7.7+23ubuntu4) ... 124s Selecting previously unselected package libxss1:amd64. 124s Preparing to unpack .../019-libxss1_1%3a1.2.3-1build3_amd64.deb ... 124s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 124s Selecting previously unselected package libtk8.6:amd64. 124s Preparing to unpack .../020-libtk8.6_8.6.16-1_amd64.deb ... 124s Unpacking libtk8.6:amd64 (8.6.16-1) ... 124s Selecting previously unselected package tk8.6-blt2.5. 124s Preparing to unpack .../021-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 124s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 124s Selecting previously unselected package blt. 124s Preparing to unpack .../022-blt_2.5.3+dfsg-8_amd64.deb ... 124s Unpacking blt (2.5.3+dfsg-8) ... 124s Selecting previously unselected package libisl23:amd64. 124s Preparing to unpack .../023-libisl23_0.27-1_amd64.deb ... 124s Unpacking libisl23:amd64 (0.27-1) ... 124s Selecting previously unselected package libmpc3:amd64. 124s Preparing to unpack .../024-libmpc3_1.3.1-1build2_amd64.deb ... 124s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 124s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 124s Preparing to unpack .../025-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 124s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 124s Selecting previously unselected package cpp-14. 124s Preparing to unpack .../026-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 124s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 124s Selecting previously unselected package cpp-x86-64-linux-gnu. 124s Preparing to unpack .../027-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 124s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 124s Selecting previously unselected package cpp. 124s Preparing to unpack .../028-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 124s Unpacking cpp (4:14.2.0-1ubuntu1) ... 124s Selecting previously unselected package libcc1-0:amd64. 124s Preparing to unpack .../029-libcc1-0_15.1.0-2ubuntu1_amd64.deb ... 124s Unpacking libcc1-0:amd64 (15.1.0-2ubuntu1) ... 124s Selecting previously unselected package libgomp1:amd64. 124s Preparing to unpack .../030-libgomp1_15.1.0-2ubuntu1_amd64.deb ... 124s Unpacking libgomp1:amd64 (15.1.0-2ubuntu1) ... 124s Selecting previously unselected package libitm1:amd64. 124s Preparing to unpack .../031-libitm1_15.1.0-2ubuntu1_amd64.deb ... 124s Unpacking libitm1:amd64 (15.1.0-2ubuntu1) ... 124s Selecting previously unselected package libasan8:amd64. 124s Preparing to unpack .../032-libasan8_15.1.0-2ubuntu1_amd64.deb ... 124s Unpacking libasan8:amd64 (15.1.0-2ubuntu1) ... 124s Selecting previously unselected package liblsan0:amd64. 124s Preparing to unpack .../033-liblsan0_15.1.0-2ubuntu1_amd64.deb ... 124s Unpacking liblsan0:amd64 (15.1.0-2ubuntu1) ... 124s Selecting previously unselected package libtsan2:amd64. 124s Preparing to unpack .../034-libtsan2_15.1.0-2ubuntu1_amd64.deb ... 124s Unpacking libtsan2:amd64 (15.1.0-2ubuntu1) ... 125s Selecting previously unselected package libubsan1:amd64. 125s Preparing to unpack .../035-libubsan1_15.1.0-2ubuntu1_amd64.deb ... 125s Unpacking libubsan1:amd64 (15.1.0-2ubuntu1) ... 125s Selecting previously unselected package libhwasan0:amd64. 125s Preparing to unpack .../036-libhwasan0_15.1.0-2ubuntu1_amd64.deb ... 125s Unpacking libhwasan0:amd64 (15.1.0-2ubuntu1) ... 125s Selecting previously unselected package libquadmath0:amd64. 125s Preparing to unpack .../037-libquadmath0_15.1.0-2ubuntu1_amd64.deb ... 125s Unpacking libquadmath0:amd64 (15.1.0-2ubuntu1) ... 125s Selecting previously unselected package libgcc-14-dev:amd64. 125s Preparing to unpack .../038-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ... 125s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 125s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 125s Preparing to unpack .../039-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 125s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 125s Selecting previously unselected package gcc-14. 125s Preparing to unpack .../040-gcc-14_14.2.0-19ubuntu2_amd64.deb ... 125s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 125s Selecting previously unselected package gcc-x86-64-linux-gnu. 125s Preparing to unpack .../041-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 125s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 125s Selecting previously unselected package gcc. 125s Preparing to unpack .../042-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 125s Unpacking gcc (4:14.2.0-1ubuntu1) ... 125s Selecting previously unselected package libstdc++-14-dev:amd64. 125s Preparing to unpack .../043-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ... 125s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 125s Selecting previously unselected package g++-14-x86-64-linux-gnu. 125s Preparing to unpack .../044-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 125s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 125s Selecting previously unselected package g++-14. 125s Preparing to unpack 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libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 127s Selecting previously unselected package libpixman-1-0:amd64. 127s Preparing to unpack .../078-libpixman-1-0_0.44.0-3_amd64.deb ... 127s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 127s Selecting previously unselected package libxcb-render0:amd64. 127s Preparing to unpack .../079-libxcb-render0_1.17.0-2_amd64.deb ... 127s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 127s Selecting previously unselected package libxcb-shm0:amd64. 127s Preparing to unpack .../080-libxcb-shm0_1.17.0-2_amd64.deb ... 127s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 127s Selecting previously unselected package libcairo2:amd64. 127s Preparing to unpack .../081-libcairo2_1.18.4-1_amd64.deb ... 127s Unpacking libcairo2:amd64 (1.18.4-1) ... 127s Selecting previously unselected package libdeflate0:amd64. 127s Preparing to unpack .../082-libdeflate0_1.23-2_amd64.deb ... 127s Unpacking libdeflate0:amd64 (1.23-2) ... 127s Selecting previously unselected package libdouble-conversion3:amd64. 127s Preparing to unpack .../083-libdouble-conversion3_3.3.1-1_amd64.deb ... 127s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ... 127s Selecting previously unselected package libpciaccess0:amd64. 127s Preparing to unpack .../084-libpciaccess0_0.17-3build1_amd64.deb ... 127s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 127s Selecting previously unselected package libdrm-intel1:amd64. 127s Preparing to unpack .../085-libdrm-intel1_2.4.124-2_amd64.deb ... 127s Unpacking libdrm-intel1:amd64 (2.4.124-2) ... 127s Selecting previously unselected package libwayland-server0:amd64. 128s Preparing to unpack .../086-libwayland-server0_1.23.1-3_amd64.deb ... 128s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 128s Selecting previously unselected package libx11-xcb1:amd64. 128s Preparing to unpack .../087-libx11-xcb1_2%3a1.8.12-1_amd64.deb ... 128s Unpacking libx11-xcb1:amd64 (2:1.8.12-1) ... 128s Selecting previously unselected package libxcb-dri3-0:amd64. 128s Preparing to unpack .../088-libxcb-dri3-0_1.17.0-2_amd64.deb ... 128s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 128s Selecting previously unselected package libxcb-present0:amd64. 128s Preparing to unpack .../089-libxcb-present0_1.17.0-2_amd64.deb ... 128s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 128s Selecting previously unselected package libxcb-randr0:amd64. 128s Preparing to unpack .../090-libxcb-randr0_1.17.0-2_amd64.deb ... 128s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 128s Selecting previously unselected package libxcb-sync1:amd64. 128s Preparing to unpack .../091-libxcb-sync1_1.17.0-2_amd64.deb ... 128s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 128s Selecting previously unselected package libxcb-xfixes0:amd64. 128s Preparing to unpack .../092-libxcb-xfixes0_1.17.0-2_amd64.deb ... 128s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 128s Selecting previously unselected package libxshmfence1:amd64. 128s Preparing to unpack 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previously unselected package libgraphite2-3:amd64. 128s Preparing to unpack .../114-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 128s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 128s Selecting previously unselected package libharfbuzz0b:amd64. 128s Preparing to unpack .../115-libharfbuzz0b_10.2.0-1_amd64.deb ... 128s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 128s Selecting previously unselected package libsz2:amd64. 128s Preparing to unpack .../116-libsz2_1.1.3-1_amd64.deb ... 128s Unpacking libsz2:amd64 (1.1.3-1) ... 128s Selecting previously unselected package libhdf5-310:amd64. 128s Preparing to unpack .../117-libhdf5-310_1.14.5+repack-3_amd64.deb ... 128s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 129s Selecting previously unselected package libhdf5-hl-310:amd64. 129s Preparing to unpack .../118-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 129s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 129s Selecting previously unselected package libhwloc15:amd64. 129s Preparing to unpack .../119-libhwloc15_2.12.0-4_amd64.deb ... 129s Unpacking libhwloc15:amd64 (2.12.0-4) ... 129s Selecting previously unselected package libice6:amd64. 129s Preparing to unpack .../120-libice6_2%3a1.1.1-1_amd64.deb ... 129s Unpacking libice6:amd64 (2:1.1.1-1) ... 129s Selecting previously unselected package libimagequant0:amd64. 129s Preparing to unpack .../121-libimagequant0_2.18.0-1build1_amd64.deb ... 129s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 129s Selecting previously unselected package libinchi1.07. 129s Preparing to unpack .../122-libinchi1.07_1.07.3+dfsg-1_amd64.deb ... 129s Unpacking libinchi1.07 (1.07.3+dfsg-1) ... 129s Selecting previously unselected package libwacom-common. 129s Preparing to unpack .../123-libwacom-common_2.14.0-1_all.deb ... 129s Unpacking libwacom-common (2.14.0-1) ... 129s Selecting previously unselected package libwacom9:amd64. 129s Preparing to unpack .../124-libwacom9_2.14.0-1_amd64.deb ... 129s Unpacking libwacom9:amd64 (2.14.0-1) ... 129s Selecting previously unselected package libinput-bin. 129s Preparing to unpack .../125-libinput-bin_1.28.1-1_amd64.deb ... 129s Unpacking libinput-bin (1.28.1-1) ... 129s Selecting previously unselected package libmtdev1t64:amd64. 129s Preparing to unpack .../126-libmtdev1t64_1.1.7-1_amd64.deb ... 129s Unpacking libmtdev1t64:amd64 (1.1.7-1) ... 129s Selecting previously unselected package libinput10:amd64. 129s Preparing to unpack .../127-libinput10_1.28.1-1_amd64.deb ... 129s Unpacking libinput10:amd64 (1.28.1-1) ... 129s Selecting previously unselected package libjpeg-turbo8:amd64. 129s Preparing to unpack .../128-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 129s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 129s Selecting previously unselected package libjpeg8:amd64. 129s Preparing to unpack .../129-libjpeg8_8c-2ubuntu11_amd64.deb ... 129s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 129s Selecting previously unselected package libjs-bootstrap. 129s Preparing to unpack .../130-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 129s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 129s Selecting previously unselected package libjs-jquery. 129s Preparing to unpack .../131-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 129s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 129s Selecting previously unselected package libjs-jquery-ui. 129s Preparing to unpack .../132-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 129s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 129s Selecting previously unselected package libjs-underscore. 129s Preparing to unpack .../133-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 129s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 129s Selecting previously unselected package libjs-sphinxdoc. 129s Preparing to unpack .../134-libjs-sphinxdoc_8.1.3-5_all.deb ... 129s Unpacking libjs-sphinxdoc (8.1.3-5) ... 129s Selecting previously unselected package libjson-perl. 129s Preparing to unpack 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Selecting previously unselected package libmaeparser1:amd64. 129s Preparing to unpack .../141-libmaeparser1_1.3.1-1build1_amd64.deb ... 129s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ... 129s Selecting previously unselected package libmd4c0:amd64. 129s Preparing to unpack .../142-libmd4c0_0.5.2-2_amd64.deb ... 129s Unpacking libmd4c0:amd64 (0.5.2-2) ... 129s Selecting previously unselected package libnetcdf22:amd64. 129s Preparing to unpack .../143-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 129s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 129s Selecting previously unselected package libogg0:amd64. 129s Preparing to unpack .../144-libogg0_1.3.5-3build1_amd64.deb ... 129s Unpacking libogg0:amd64 (1.3.5-3build1) ... 129s Selecting previously unselected package libopenbabel7. 129s Preparing to unpack .../145-libopenbabel7_3.1.1+dfsg-11ubuntu3_amd64.deb ... 129s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 130s Selecting previously unselected package libmunge2:amd64. 130s Preparing to unpack .../146-libmunge2_0.5.16-1_amd64.deb ... 130s Unpacking libmunge2:amd64 (0.5.16-1) ... 130s Selecting previously unselected package libxnvctrl0:amd64. 130s Preparing to unpack .../147-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 130s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 130s Selecting previously unselected package libze1:amd64. 130s Preparing to unpack .../148-libze1_1.20.6-1_amd64.deb ... 130s Unpacking libze1:amd64 (1.20.6-1) ... 130s Selecting previously unselected package ocl-icd-libopencl1:amd64. 130s Preparing to unpack .../149-ocl-icd-libopencl1_2.3.3-1_amd64.deb ... 130s Unpacking ocl-icd-libopencl1:amd64 (2.3.3-1) ... 130s Selecting previously unselected package libhwloc-plugins:amd64. 130s Preparing to unpack .../150-libhwloc-plugins_2.12.0-4_amd64.deb ... 130s Unpacking libhwloc-plugins:amd64 (2.12.0-4) ... 130s Selecting previously unselected package libpmix2t64:amd64. 130s Preparing to unpack .../151-libpmix2t64_5.0.7-1_amd64.deb ... 130s Unpacking libpmix2t64:amd64 (5.0.7-1) ... 130s Selecting previously unselected package libibumad3:amd64. 130s Preparing to unpack .../152-libibumad3_56.0-4ubuntu1_amd64.deb ... 130s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ... 130s Selecting previously unselected package libibmad5:amd64. 130s Preparing to unpack .../153-libibmad5_56.0-4ubuntu1_amd64.deb ... 130s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ... 130s Selecting previously unselected package libucx0:amd64. 130s Preparing to unpack .../154-libucx0_1.18.1+ds-2_amd64.deb ... 130s Unpacking libucx0:amd64 (1.18.1+ds-2) ... 130s Selecting previously unselected package libopenmpi40:amd64. 130s Preparing to unpack .../155-libopenmpi40_5.0.7-1_amd64.deb ... 130s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 130s Selecting previously unselected package libpcre2-16-0:amd64. 130s Preparing to unpack .../156-libpcre2-16-0_10.45-1_amd64.deb ... 130s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 130s Selecting previously unselected package proj-data. 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130s Selecting previously unselected package zlib1g-dev:amd64. 130s Preparing to unpack .../163-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 130s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 130s Selecting previously unselected package libpython3.13-dev:amd64. 130s Preparing to unpack .../164-libpython3.13-dev_3.13.3-1_amd64.deb ... 130s Unpacking libpython3.13-dev:amd64 (3.13.3-1) ... 130s Selecting previously unselected package libpython3-dev:amd64. 130s Preparing to unpack .../165-libpython3-dev_3.13.3-1_amd64.deb ... 130s Unpacking libpython3-dev:amd64 (3.13.3-1) ... 130s Selecting previously unselected package libpython3-all-dev:amd64. 130s Preparing to unpack .../166-libpython3-all-dev_3.13.3-1_amd64.deb ... 130s Unpacking libpython3-all-dev:amd64 (3.13.3-1) ... 130s Selecting previously unselected package libqhull-r8.0:amd64. 130s Preparing to unpack .../167-libqhull-r8.0_2020.2-6build1_amd64.deb ... 130s Unpacking libqhull-r8.0:amd64 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libsm6:amd64 (2:1.2.6-1) ... 131s Selecting previously unselected package libxcb-icccm4:amd64. 131s Preparing to unpack .../173-libxcb-icccm4_0.4.2-1_amd64.deb ... 131s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 131s Selecting previously unselected package libxcb-util1:amd64. 131s Preparing to unpack .../174-libxcb-util1_0.4.1-1_amd64.deb ... 131s Unpacking libxcb-util1:amd64 (0.4.1-1) ... 131s Selecting previously unselected package libxcb-image0:amd64. 131s Preparing to unpack .../175-libxcb-image0_0.4.0-2build1_amd64.deb ... 131s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 131s Selecting previously unselected package libxcb-keysyms1:amd64. 131s Preparing to unpack .../176-libxcb-keysyms1_0.4.1-1_amd64.deb ... 131s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ... 131s Selecting previously unselected package libxcb-render-util0:amd64. 131s Preparing to unpack .../177-libxcb-render-util0_0.3.10-1_amd64.deb ... 131s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ... 131s Selecting previously unselected package libxcb-shape0:amd64. 131s Preparing to unpack .../178-libxcb-shape0_1.17.0-2_amd64.deb ... 131s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 131s Selecting previously unselected package libxcb-xinerama0:amd64. 131s Preparing to unpack .../179-libxcb-xinerama0_1.17.0-2_amd64.deb ... 131s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 131s Selecting previously unselected package libxcb-xinput0:amd64. 131s Preparing to unpack .../180-libxcb-xinput0_1.17.0-2_amd64.deb ... 131s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 131s Selecting previously unselected package libxcb-xkb1:amd64. 131s Preparing to unpack .../181-libxcb-xkb1_1.17.0-2_amd64.deb ... 131s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 131s Selecting previously unselected package libxkbcommon-x11-0:amd64. 131s Preparing to unpack .../182-libxkbcommon-x11-0_1.7.0-2_amd64.deb ... 131s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ... 131s Selecting previously unselected package libqt5gui5t64:amd64. 131s Preparing to unpack .../183-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 131s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 131s Selecting previously unselected package libqt5widgets5t64:amd64. 131s Preparing to unpack .../184-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 131s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 131s Selecting previously unselected package libraqm0:amd64. 131s Preparing to unpack .../185-libraqm0_0.10.2-1_amd64.deb ... 131s Unpacking libraqm0:amd64 (0.10.2-1) ... 131s Selecting previously unselected package libsymspg2:amd64. 131s Preparing to unpack .../186-libsymspg2_2.6.0-3_amd64.deb ... 131s Unpacking libsymspg2:amd64 (2.6.0-3) ... 131s Selecting previously unselected package libtbbbind-2-5:amd64. 131s Preparing to unpack .../187-libtbbbind-2-5_2022.0.0-2_amd64.deb ... 131s Unpacking libtbbbind-2-5:amd64 (2022.0.0-2) ... 131s Selecting previously unselected package libtbbmalloc2:amd64. 131s Preparing to unpack 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.../198-openmpi-common_5.0.7-1_all.deb ... 132s Unpacking openmpi-common (5.0.7-1) ... 132s Selecting previously unselected package openmpi-bin. 132s Preparing to unpack .../199-openmpi-bin_5.0.7-1_amd64.deb ... 132s Unpacking openmpi-bin (5.0.7-1) ... 132s Selecting previously unselected package packmol. 132s Preparing to unpack .../200-packmol_1%3a21.0.1-1_amd64.deb ... 132s Unpacking packmol (1:21.0.1-1) ... 132s Selecting previously unselected package python3-pyproject-hooks. 132s Preparing to unpack .../201-python3-pyproject-hooks_1.2.0-1_all.deb ... 132s Unpacking python3-pyproject-hooks (1.2.0-1) ... 132s Selecting previously unselected package python3-toml. 132s Preparing to unpack .../202-python3-toml_0.10.2-1_all.deb ... 132s Unpacking python3-toml (0.10.2-1) ... 132s Selecting previously unselected package python3-wheel. 132s Preparing to unpack .../203-python3-wheel_0.45.1-1_all.deb ... 132s Unpacking python3-wheel (0.45.1-1) ... 132s Selecting previously unselected package python3-build. 132s Preparing to unpack .../204-python3-build_1.2.2-1_all.deb ... 132s Unpacking python3-build (1.2.2-1) ... 132s Selecting previously unselected package python3-installer. 132s Preparing to unpack .../205-python3-installer_0.7.0+dfsg1-3_all.deb ... 132s Unpacking python3-installer (0.7.0+dfsg1-3) ... 132s Selecting previously unselected package pybuild-plugin-pyproject. 132s Preparing to unpack .../206-pybuild-plugin-pyproject_6.20250414_all.deb ... 132s Unpacking pybuild-plugin-pyproject (6.20250414) ... 132s Selecting previously unselected package pymatgen-test-files. 132s Preparing to unpack .../207-pymatgen-test-files_2025.2.18-1_all.deb ... 132s Unpacking pymatgen-test-files (2025.2.18-1) ... 134s Selecting previously unselected package python-matplotlib-data. 134s Preparing to unpack .../208-python-matplotlib-data_3.8.3-7build1_all.deb ... 134s Unpacking python-matplotlib-data (3.8.3-7build1) ... 135s Selecting previously unselected package libjs-mathjax. 135s 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unselected package libopenjp2-7:amd64. 136s Preparing to unpack .../220-libopenjp2-7_2.5.3-2_amd64.deb ... 136s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 136s Selecting previously unselected package python3-pil:amd64. 136s Preparing to unpack .../221-python3-pil_11.1.0-5build1_amd64.deb ... 136s Unpacking python3-pil:amd64 (11.1.0-5build1) ... 136s Selecting previously unselected package python3.13-tk. 136s Preparing to unpack .../222-python3.13-tk_3.13.3-1_amd64.deb ... 136s Unpacking python3.13-tk (3.13.3-1) ... 136s Selecting previously unselected package python3-tk:amd64. 136s Preparing to unpack .../223-python3-tk_3.13.3-1_amd64.deb ... 136s Unpacking python3-tk:amd64 (3.13.3-1) ... 136s Selecting previously unselected package python3-pil.imagetk:amd64. 136s Preparing to unpack .../224-python3-pil.imagetk_11.1.0-5build1_amd64.deb ... 136s Unpacking python3-pil.imagetk:amd64 (11.1.0-5build1) ... 136s Selecting previously unselected package python3-contourpy. 136s Preparing to unpack .../225-python3-contourpy_1.3.1-1build1_amd64.deb ... 136s Unpacking python3-contourpy (1.3.1-1build1) ... 136s Selecting previously unselected package python3-cycler. 136s Preparing to unpack .../226-python3-cycler_0.12.1-1_all.deb ... 136s Unpacking python3-cycler (0.12.1-1) ... 136s Selecting previously unselected package python3-brotli. 136s Preparing to unpack .../227-python3-brotli_1.1.0-2build4_amd64.deb ... 136s Unpacking python3-brotli (1.1.0-2build4) ... 136s Selecting previously unselected package python3-platformdirs. 136s Preparing to unpack .../228-python3-platformdirs_4.3.7-1_all.deb ... 136s Unpacking python3-platformdirs (4.3.7-1) ... 136s Selecting previously unselected package python3-fs. 136s Preparing to unpack .../229-python3-fs_2.4.16-7_all.deb ... 136s Unpacking python3-fs (2.4.16-7) ... 136s Selecting previously unselected package python3-lxml:amd64. 136s Preparing to unpack .../230-python3-lxml_5.4.0-1_amd64.deb ... 136s Unpacking python3-lxml:amd64 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python3-roman. 137s Preparing to unpack .../247-python3-roman_5.0-1_all.deb ... 137s Unpacking python3-roman (5.0-1) ... 137s Selecting previously unselected package python3-docutils. 137s Preparing to unpack .../248-python3-docutils_0.21.2+dfsg-2_all.deb ... 137s Unpacking python3-docutils (0.21.2+dfsg-2) ... 137s Selecting previously unselected package python3-email-validator. 137s Preparing to unpack .../249-python3-email-validator_2.2.0-1_all.deb ... 137s Unpacking python3-email-validator (2.2.0-1) ... 138s Selecting previously unselected package python3-fastjsonschema. 138s Preparing to unpack .../250-python3-fastjsonschema_2.21.1-1_all.deb ... 138s Unpacking python3-fastjsonschema (2.21.1-1) ... 138s Selecting previously unselected package python3-frozendict. 138s Preparing to unpack .../251-python3-frozendict_2.4.6-1_all.deb ... 138s Unpacking python3-frozendict (2.4.6-1) ... 138s Selecting previously unselected package python3-h5py-serial. 138s Preparing to unpack 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unselected package python3-pydantic-core. 138s Preparing to unpack .../263-python3-pydantic-core_2.27.2-1build1_amd64.deb ... 138s Unpacking python3-pydantic-core (2.27.2-1build1) ... 138s Selecting previously unselected package python3-pydantic. 138s Preparing to unpack .../264-python3-pydantic_2.10.6-1_amd64.deb ... 138s Unpacking python3-pydantic (2.10.6-1) ... 138s Selecting previously unselected package python3-tqdm. 138s Preparing to unpack .../265-python3-tqdm_4.67.1-3_all.deb ... 138s Unpacking python3-tqdm (4.67.1-3) ... 138s Selecting previously unselected package python3-ruamel.yaml.clib. 138s Preparing to unpack .../266-python3-ruamel.yaml.clib_0.2.12+ds-1build1_amd64.deb ... 138s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 138s Selecting previously unselected package python3-ruamel.yaml. 138s Preparing to unpack .../267-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 138s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 138s Selecting previously unselected package python3-monty. 138s Preparing to unpack .../268-python3-monty_2025.3.3-1_all.deb ... 138s Unpacking python3-monty (2025.3.3-1) ... 138s Selecting previously unselected package python3-nbformat. 138s Preparing to unpack .../269-python3-nbformat_5.9.1-1_all.deb ... 138s Unpacking python3-nbformat (5.9.1-1) ... 138s Selecting previously unselected package python3-netcdf4. 138s Preparing to unpack .../270-python3-netcdf4_1.7.2-1build4_amd64.deb ... 138s Unpacking python3-netcdf4 (1.7.2-1build4) ... 138s Selecting previously unselected package python3-networkx. 138s Preparing to unpack .../271-python3-networkx_3.2.1-4ubuntu1_all.deb ... 138s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 139s Selecting previously unselected package python3-openbabel. 139s Preparing to unpack .../272-python3-openbabel_3.1.1+dfsg-11ubuntu3_amd64.deb ... 139s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 139s Selecting previously unselected package python3-palettable. 139s Preparing to unpack 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(2.13.1-1) ... 176s Processing triggers for udev (257.4-1ubuntu3) ... 176s Processing triggers for install-info (7.1.1-1) ... 176s Processing triggers for sgml-base (1.31+nmu1) ... 176s Setting up docutils-common (0.21.2+dfsg-2) ... 177s Processing triggers for sgml-base (1.31+nmu1) ... 177s Setting up python3-docutils (0.21.2+dfsg-2) ... 177s Setting up python3-sphinx (8.1.3-5) ... 178s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 178s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 179s autopkgtest [17:26:35]: test test-pymatgen: [----------------------- 179s skipping tests with SKIP_TEST_LIST=TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_rotor_search_rrs BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_CifWriter test_read_write test_init test_get_site_symmetries test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_rotor_search_wrs 198s ============================= test session starts ============================== 198s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 198s rootdir: /tmp/autopkgtest.OBcu4n/build.7cV/src 198s configfile: pyproject.toml 198s plugins: typeguard-4.4.2 198s collected 3117 items / 294 deselected / 7 skipped / 2823 selected 198s 199s tests/alchemy/test_filters.py ....... 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[100%] 1252s 1252s =================================== FAILURES =================================== 1252s _________________ TestInterfaceReaction.test_get_entry_energy __________________ 1252s 1252s self = 1252s 1252s def test_get_entry_energy(self): 1252s comp = Composition("MnO3") 1252s with pytest.warns(UserWarning) as warns: 1252s energy = InterfacialReactivity._get_entry_energy(self.pd, comp) 1252s > assert len(warns) == 1 1252s E assert 3 == 1 1252s E + where 3 = len(WarningsChecker(record=True)) 1252s 1252s tests/analysis/test_interface_reactions.py:184: AssertionError 1252s =============================== warnings summary =============================== 1252s tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/chemenv/utils/math_utils.py:333: RuntimeWarning: divide by zero encountered in scalar divide 1252s return np.where(np.isclose(xx, 0.0), aa * float("inf"), aa * np.power(xx - 1.0, 2) / xx) 1252s 1252s tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/chemenv/utils/math_utils.py:351: RuntimeWarning: divide by zero encountered in scalar divide 1252s aa * np.power(xx - 1.0, 2) / xx**2.0, 1252s 1252s tests/analysis/elasticity/test_elastic.py: 96974 warnings 1252s tests/analysis/elasticity/test_strain.py: 4 warnings 1252s tests/analysis/elasticity/test_stress.py: 8 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 16 warnings 1252s tests/analysis/test_piezo.py: 8 warnings 1252s tests/core/test_tensors.py: 468 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:364: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 48487 warnings 1252s tests/analysis/elasticity/test_strain.py: 2 warnings 1252s tests/analysis/elasticity/test_stress.py: 4 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 8 warnings 1252s tests/analysis/test_piezo.py: 4 warnings 1252s tests/core/test_tensors.py: 234 warnings 1252s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:64: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 5280 warnings 1252s tests/analysis/elasticity/test_strain.py: 135 warnings 1252s tests/analysis/elasticity/test_stress.py: 3 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 360 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 1776 warnings 1252s tests/analysis/test_nmr.py: 15 warnings 1252s tests/core/test_tensors.py: 215 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:287: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 14329 warnings 1252s tests/analysis/elasticity/test_strain.py: 363 warnings 1252s tests/analysis/elasticity/test_stress.py: 31 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 1272 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 7104 warnings 1252s tests/analysis/test_nmr.py: 10 warnings 1252s tests/analysis/test_piezo.py: 63 warnings 1252s tests/core/test_tensors.py: 10977 warnings 1252s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2447: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 1788 warnings 1252s tests/analysis/elasticity/test_strain.py: 36 warnings 1252s tests/analysis/elasticity/test_stress.py: 2 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings 1252s tests/analysis/test_piezo.py: 6 warnings 1252s tests/core/test_tensors.py: 1369 warnings 1252s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2448: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 1793 warnings 1252s tests/analysis/elasticity/test_strain.py: 51 warnings 1252s tests/analysis/elasticity/test_stress.py: 5 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings 1252s tests/analysis/test_nmr.py: 2 warnings 1252s tests/analysis/test_piezo.py: 9 warnings 1252s tests/core/test_tensors.py: 1374 warnings 1252s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2449: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 1910 warnings 1252s tests/analysis/elasticity/test_strain.py: 108 warnings 1252s tests/analysis/elasticity/test_stress.py: 17 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings 1252s tests/analysis/test_nmr.py: 16 warnings 1252s tests/analysis/test_piezo.py: 18 warnings 1252s tests/core/test_tensors.py: 1629 warnings 1252s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:73: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 52 warnings 1252s tests/analysis/elasticity/test_strain.py: 40 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 162 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:196: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 5 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:92: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 5 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1252s tests/core/test_tensors.py: 1 warning 1252s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:52: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 1174 warnings 1252s tests/core/test_tensors.py: 54 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:110: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py::TestElasticTensor::test_from_independent_strains 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/analysis/elasticity/test_elastic.py:228: UserWarning: 1252s 1252s Extra strain states in strain-stress pairs are neglected in independent strain fitting 1252s 1252s tests/analysis/elasticity/test_elastic.py: 12 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:482: UserWarning: 1252s 1252s Tensor is not symmetric, information may be lost in Voigt conversion. 1252s 1252s tests/analysis/elasticity/test_elastic.py: 30 warnings 1252s tests/analysis/elasticity/test_strain.py: 18 warnings 1252s tests/analysis/elasticity/test_stress.py: 4 warnings 1252s tests/analysis/test_nmr.py: 4 warnings 1252s tests/analysis/test_piezo.py: 3 warnings 1252s tests/core/test_tensors.py: 84 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:761: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 28 warnings 1252s tests/analysis/elasticity/test_strain.py: 4 warnings 1252s tests/analysis/elasticity/test_stress.py: 1 warning 1252s tests/analysis/test_nmr.py: 2 warnings 1252s tests/core/test_tensors.py: 84 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:762: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 99 warnings 1252s tests/analysis/elasticity/test_strain.py: 57 warnings 1252s tests/analysis/elasticity/test_stress.py: 12 warnings 1252s tests/analysis/test_nmr.py: 12 warnings 1252s tests/analysis/test_piezo.py: 9 warnings 1252s tests/core/test_tensors.py: 255 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:774: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 58 warnings 1252s tests/analysis/elasticity/test_strain.py: 22 warnings 1252s tests/analysis/elasticity/test_stress.py: 5 warnings 1252s tests/analysis/test_nmr.py: 6 warnings 1252s tests/analysis/test_piezo.py: 3 warnings 1252s tests/core/test_tensors.py: 168 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:816: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 28 warnings 1252s tests/analysis/elasticity/test_strain.py: 4 warnings 1252s tests/analysis/elasticity/test_stress.py: 1 warning 1252s tests/analysis/test_nmr.py: 2 warnings 1252s tests/core/test_tensors.py: 84 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:815: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 58 warnings 1252s tests/analysis/elasticity/test_strain.py: 22 warnings 1252s tests/analysis/elasticity/test_stress.py: 5 warnings 1252s tests/analysis/test_nmr.py: 6 warnings 1252s tests/analysis/test_piezo.py: 3 warnings 1252s tests/core/test_tensors.py: 168 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:819: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 28 warnings 1252s tests/analysis/elasticity/test_strain.py: 4 warnings 1252s tests/analysis/elasticity/test_stress.py: 1 warning 1252s tests/analysis/test_nmr.py: 2 warnings 1252s tests/core/test_tensors.py: 84 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:818: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 56 warnings 1252s tests/analysis/elasticity/test_strain.py: 8 warnings 1252s tests/analysis/elasticity/test_stress.py: 2 warnings 1252s tests/analysis/test_nmr.py: 4 warnings 1252s tests/core/test_tensors.py: 168 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:843: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 124 warnings 1252s tests/analysis/elasticity/test_strain.py: 60 warnings 1252s tests/analysis/elasticity/test_stress.py: 13 warnings 1252s tests/analysis/test_nmr.py: 6 warnings 1252s tests/analysis/test_piezo.py: 9 warnings 1252s tests/core/test_tensors.py: 338 warnings 1252s /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2451: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 33 warnings 1252s tests/analysis/elasticity/test_strain.py: 19 warnings 1252s tests/analysis/elasticity/test_stress.py: 4 warnings 1252s tests/analysis/test_nmr.py: 4 warnings 1252s tests/analysis/test_piezo.py: 3 warnings 1252s tests/core/test_tensors.py: 85 warnings 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:852: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 36 warnings 1252s tests/core/test_tensors.py: 8 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:629: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1252s tests/core/test_tensors.py: 1536 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:633: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1252s tests/core/test_tensors.py: 1536 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:634: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1252s tests/core/test_tensors.py: 1536 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:635: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 3456 warnings 1252s tests/core/test_tensors.py: 768 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:636: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 6912 warnings 1252s tests/core/test_tensors.py: 1536 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:637: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 3474 warnings 1252s tests/core/test_tensors.py: 2775 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:327: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 36 warnings 1252s tests/core/test_tensors.py: 8 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:665: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 18 warnings 1252s tests/core/test_tensors.py: 4 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:666: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 11 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:584: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 28 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:742: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_elastic.py: 2 warnings 1252s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1252s tests/core/test_tensors.py: 1 warning 1252s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:1895: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1252s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1252s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1252s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1252s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1252s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:63: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_strain.py: 12 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:253: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:70: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:77: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:89: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/elasticity/test_stress.py::TestStress::test_properties 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:101: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:235: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:237: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/interfaces/test_coherent_interface.py: 78 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1252s tests/core/test_tensors.py: 82 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1021: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/interfaces/test_coherent_interface.py: 78 warnings 1252s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings 1252s tests/core/test_tensors.py: 82 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:992: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_graphs.py: 17 warnings 1252s tests/command_line/test_critic2_caller.py: 5 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/command_line/critic2_caller.py:490: DeprecationWarning: 1252s 1252s Parsing critic2 standard output is deprecated and will not be maintained, please use the native JSON output in the future. 1252s 1252s tests/analysis/test_interface_reactions.py: 24 warnings 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/analysis/test_interface_reactions.py:368: DeprecationWarning: 1252s 1252s Arrays of 2-dimensional vectors are deprecated. Use arrays of 3-dimensional vectors instead. (deprecated in NumPy 2.0) 1252s 1252s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/nmr.py:91: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/nmr.py:104: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/nmr.py:112: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_principal_axis_system 1252s tests/analysis/test_nmr.py::TestElectricFieldGradient::test_principal_axis_system 1252s /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:851: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 120 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:385: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 590 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:387: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 120 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:388: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 60 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:396: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 1040 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:393: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 12390 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:568: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 2520 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:571: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 1260 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:581: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 21840 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:578: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 826 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:437: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 168 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:439: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 84 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:449: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 1456 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:446: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 88 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:126: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 88 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:145: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 84 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:243: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_piezo_sensitivity.py: 98 warnings 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:244: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1252s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1252s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1252s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel 1252s /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: 1252s 1252s This process (pid=5753) is multi-threaded, use of fork() may lead to deadlocks in the child. 1252s 1252s tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/quasirrho.py:243: RuntimeWarning: 1252s 1252s overflow encountered in exp 1252s 1252s tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/quasirrho.py:244: RuntimeWarning: 1252s 1252s overflow encountered in exp 1252s 1252s tests/analysis/test_reaction_calculator.py::TestComputedReaction::test_calculated_reaction_energy_uncertainty 1252s tests/analysis/test_reaction_calculator.py::TestComputedReaction::test_calculated_reaction_energy_uncertainty_for_nan 1252s tests/analysis/test_reaction_calculator.py::TestComputedReaction::test_calculated_reaction_energy_uncertainty_for_no_uncertainty 1252s /usr/lib/python3/dist-packages/pymatgen/analysis/reaction_calculator.py:489: FutureWarning: 1252s 1252s AffineScalarFunc.__lt__() is deprecated. It will be removed in a future release. 1252s 1252s tests/core/test_structure.py::TestStructure::test_rotate_sites 1252s /usr/lib/python3/dist-packages/pymatgen/core/structure.py:4699: RuntimeWarning: 1252s 1252s invalid value encountered in divide 1252s 1252s tests/core/test_tensors.py: 18 warnings 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/core/test_tensors.py:207: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee 1252s /usr/lib/python3/dist-packages/numpy/_core/_methods.py:44: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestTensor::test_round 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/core/test_tensors.py:376: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestTensor::test_round 1252s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:48: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestTensorCollection::test_list_based_functions 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/core/test_tensors.py:409: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestSquareTensor::test_get_scaled 1252s /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1003: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestSquareTensor::test_properties 1252s tests/core/test_tensors.py::TestSquareTensor::test_properties 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/core/test_tensors.py:524: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/core/test_tensors.py::TestSquareTensor::test_refine_rotation 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/core/test_tensors.py:556: DeprecationWarning: 1252s 1252s __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0) 1252s 1252s tests/electronic_structure/test_bandstructure.py::TestLobsterBandStructureSymmLine::test_proj_bandstructure_plot 1252s /usr/lib/python3/dist-packages/pymatgen/electronic_structure/plotter.py:1119: RuntimeWarning: 1252s 1252s More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. 1252s 1252s tests/electronic_structure/test_dos.py::TestFermiDos::test_doping_fermi 1252s /usr/lib/python3/dist-packages/pymatgen/electronic_structure/dos.py:527: RuntimeWarning: 1252s 1252s divide by zero encountered in divide 1252s 1252s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries 1252s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries 1252s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries 1252s /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning: 1252s 1252s This process (pid=5753) is multi-threaded, use of fork() may lead to deadlocks in the child. 1252s 1252s tests/io/lammps/test_data.py::TestLammpsData::test_get_str 1252s tests/io/lammps/test_data.py::TestLammpsData::test_write_file 1252s tests/io/lammps/test_data.py::TestLammpsData::test_write_file 1252s tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata 1252s tests/io/lammps/test_data.py::TestCombinedData::test_get_str 1252s /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:57: FutureWarning: 1252s 1252s 'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead. 1252s 1252s tests/io/test_cif.py::TestCifIO::test_cif_writer_write_file 1252s /usr/lib/python3/dist-packages/pymatgen/io/cif.py:1767: FutureWarning: 1252s 1252s We strongly discourage using implicit binary/text `mode`, and this would not be allowed after 2025-06-01. I.e. you should pass t/b in `mode`. 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_ionic 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:366: UnconvergedVASPWarning: 1252s 1252s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. 1252s Electronic convergence reached: True. 1252s Ionic convergence reached: False. 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_unconverged 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:373: UnconvergedVASPWarning: 1252s 1252s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.unconverged.xml.gz is an unconverged VASP run. 1252s Electronic convergence reached: False. 1252s Ionic convergence reached: True. 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:159: UnconvergedVASPWarning: 1252s 1252s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.hse06.xml.gz is an unconverged VASP run. 1252s Electronic convergence reached: False. 1252s Ionic convergence reached: True. 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:165: UnconvergedVASPWarning: 1252s 1252s /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run. 1252s Electronic convergence reached: True. 1252s Ionic convergence reached: False. 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:238: RuntimeWarning: 1252s 1252s invalid value encountered in divide 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:243: RuntimeWarning: 1252s 1252s invalid value encountered in divide 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:248: RuntimeWarning: 1252s 1252s invalid value encountered in divide 1252s 1252s tests/io/vasp/test_outputs.py::TestVasprun::test_standard 1252s /tmp/autopkgtest.OBcu4n/build.7cV/src/tests/io/vasp/test_outputs.py:256: RuntimeWarning: 1252s 1252s invalid value encountered in divide 1252s 1252s tests/io/vasp/test_outputs.py::TestWavecar::test_standard 1252s /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:5008: RuntimeWarning: 1252s 1252s invalid value encountered in cast 1252s 1252s tests/phonon/test_plotter.py::TestPhononBSPlotter::test_proj_plot 1252s /usr/lib/python3/dist-packages/pymatgen/phonon/plotter.py:514: RuntimeWarning: 1252s 1252s More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`. 1252s 1252s tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap 1252s tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap 1252s tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap 1252s tests/util/test_plotting.py::TestFunc::test_plot_periodic_heatmap 1252s /usr/lib/python3/dist-packages/pymatgen/util/plotting.py:350: MatplotlibDeprecationWarning: 1252s 1252s Getting the array from a PolyQuadMesh will return the full array in the future (uncompressed). To get this behavior now set the PolyQuadMesh with a 2D array .set_array(data2d). 1252s 1252s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 1252s ============================= slowest 30 durations ============================= 1252s 41.73s call tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell 1252s 29.92s call tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods 1252s 22.66s call tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10 1252s 19.87s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot 1252s 19.20s call tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation 1252s 15.43s call tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter 1252s 15.42s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen 1252s 15.37s call tests/ext/test_optimade.py::TestOptimade::test_update_aliases 1252s 15.21s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi 1252s 15.14s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack 1252s 14.89s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos 1252s 14.87s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies 1252s 14.61s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen 1252s 14.50s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp 1252s 14.44s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict 1252s 14.15s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos 1252s 14.13s call tests/core/test_surface.py::TestSlab::test_symmetrization 1252s 14.09s call tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy 1252s 12.88s call tests/io/vasp/test_optics.py::TestVasprun::test_optics 1252s 12.81s call tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress 1252s 12.51s call tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab 1252s 11.65s call tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number 1252s 10.68s call tests/io/test_packmol.py::TestPackmolSet::test_chdir_behavior 1252s 9.56s call tests/io/vasp/test_outputs.py::TestVasprun::test_runtype 1252s 8.69s call tests/io/lobster/test_inputs.py::TestLobsterin::test_standard_with_energy_range_from_vasprun 1252s 8.59s call tests/io/vasp/test_outputs.py::TestVasprun::test_vasprun_soc 1252s 8.44s call tests/symmetry/test_kpath_sc.py::TestBandStructureSC::test_kpath_generation 1252s 8.23s call tests/io/lobster/test_lobsterenv.py::TestLobsterNeighbors::test_get_info_cohps_to_neighbors 1252s 8.11s call tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states 1252s 7.63s call tests/cli/test_pmg_plot.py::test_plot_chgint 1252s =========================== short test summary info ============================ 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 1252s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 1252s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1252s SKIPPED [1] tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' 1252s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 1252s SKIPPED [1] tests/performance/test_import_time.py:32: ref time only comparable in CI runner 1252s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 1252s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:264: enumlib not present 1252s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:300: enumlib not present 1252s SKIPPED [1] tests/analysis/test_graphs.py:351: graphviz executables not present 1252s SKIPPED [1] tests/analysis/test_graphs.py:243: Need someone to fix this, see issue 4206 1252s SKIPPED [1] tests/analysis/test_local_env.py:1367: critic2 executable not present 1252s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this 1252s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this 1252s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present 1252s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present 1252s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present 1252s SKIPPED [1] tests/command_line/test_bader_caller.py:136: bader executable not present 1252s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present 1252s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present 1252s SKIPPED [1] tests/command_line/test_enumlib_caller.py:93: enum_lib not present. 1252s SKIPPED [1] tests/command_line/test_enumlib_caller.py:81: enum_lib not present. 1252s SKIPPED [1] tests/command_line/test_enumlib_caller.py:123: enum_lib not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present. 1252s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present. 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present 1252s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present 1252s SKIPPED [1] tests/core/test_structure.py:714: Only run this in CI tests 1252s SKIPPED [1] tests/core/test_structure.py:107: enumlib or mcsqs executable not present 1252s SKIPPED [1] tests/core/test_structure.py:988: could not import 'moyopy': No module named 'moyopy' 1252s SKIPPED [1] tests/core/test_structure.py:1931: chgnet is not built against NumPy 2.0 1252s SKIPPED [1] tests/core/test_structure.py:2003: TODO: #3958 wait for matgl resolve of torch dependency 1252s SKIPPED [1] tests/core/test_structure.py:1021: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR. 1252s SKIPPED [1] tests/core/test_structure.py:1906: chgnet is not built against NumPy 2.0 1252s SKIPPED [1] tests/core/test_structure.py:2015: TODO: #3958 wait for matgl resolve of torch dependency 1252s SKIPPED [1] tests/core/test_structure.py:2026: TODO: #3958 wait for matgl resolve of torch dependency 1252s SKIPPED [1] tests/core/test_structure.py:2035: TODO: #3958 wait for matgl resolve of torch dependency 1252s SKIPPED [1] tests/core/test_structure.py:2668: could not import 'tblite': No module named 'tblite' 1252s SKIPPED [1] tests/core/test_structure.py:2676: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060 1252s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily 1252s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO: 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:254: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:221: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:241: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:169: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:199: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:232: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:101: No FDINT 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:123: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:203: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:132: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:116: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:86: No FDINT 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:207: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:141: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:157: No x_trans. 1252s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:43: No x_trans. 1252s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found 1252s SKIPPED [1] tests/io/exciting/test_inputs.py:137: inconsistent data 1252s SKIPPED [1] tests/io/test_cif.py:322: non-free PF*.cif test files are not available 1252s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded. 1252s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded. 1252s SKIPPED [1] tests/io/vasp/test_inputs.py:1717: TODO: need someone to fix this 1252s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present. 1252s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:207: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:237: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:249: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:364: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:304: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:342: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:352: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:492: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:540: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:549: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:607: mcsqs not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:617: mcsqs not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:638: mcsqs not present. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:670: icet not installed. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:656: icet not installed. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:681: icet not installed. 1252s SKIPPED [1] tests/transformations/test_advanced_transformations.py:874: hiphive not present 1252s SKIPPED [1] tests/transformations/test_site_transformations.py:214: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_standard_transformations.py:238: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_standard_transformations.py:255: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_standard_transformations.py:273: enum_lib not present. 1252s SKIPPED [1] tests/transformations/test_standard_transformations.py:279: enum_lib not present. 1252s = 1 failed, 2683 passed, 146 skipped, 294 deselected, 296931 warnings in 1072.86s (0:17:52) = 1252s ..tot conformations = 3 1252s ..tot confs tested = 3 1252s ..below energy threshold = 3 1257s autopkgtest [17:44:33]: test test-pymatgen: -----------------------] 1258s autopkgtest [17:44:34]: test test-pymatgen: - - - - - - - - - - results - - - - - - - - - - 1258s test-pymatgen FAIL non-zero exit status 1 1258s autopkgtest [17:44:34]: test test-pymatgen-net: preparing testbed 1322s autopkgtest [17:45:38]: testbed dpkg architecture: amd64 1323s autopkgtest [17:45:39]: testbed apt version: 3.0.0 1323s autopkgtest [17:45:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1323s autopkgtest [17:45:39]: testbed release detected to be: questing 1324s autopkgtest [17:45:40]: updating testbed package index (apt update) 1324s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 1324s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 1325s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 1325s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 1325s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB] 1325s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [580 kB] 1325s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [67.8 kB] 1325s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [94.4 kB] 1325s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [137 kB] 1325s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [656 kB] 1325s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [262 kB] 1325s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [18.4 kB] 1325s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [5028 B] 1325s Fetched 1958 kB in 1s (2195 kB/s) 1326s Reading package lists... 1327s autopkgtest [17:45:43]: upgrading testbed (apt dist-upgrade and autopurge) 1327s Reading package lists... 1327s Building dependency tree... 1327s Reading state information... 1327s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 1327s Starting 2 pkgProblemResolver with broken count: 0 1327s Done 1328s Entering ResolveByKeep 1328s 1328s Calculating upgrade... 1329s The following packages will be upgraded: 1329s gcc-15-base libatomic1 libdebuginfod-common libdebuginfod1t64 libdw1t64 1329s libelf1t64 libgcc-s1 libperl5.40 libstdc++6 lto-disabled-list perl perl-base 1329s perl-modules-5.40 python3-dbus sensible-utils 1329s 15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1329s Need to get 11.7 MB of archives. 1329s After this operation, 25.6 kB of additional disk space will be used. 1329s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 1329s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 perl amd64 5.40.1-3 [262 kB] 1329s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 1330s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 1330s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libdebuginfod-common all 0.193-1 [15.6 kB] 1330s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libatomic1 amd64 15.1.0-2ubuntu1 [10.5 kB] 1330s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-15-base amd64 15.1.0-2ubuntu1 [54.6 kB] 1330s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-s1 amd64 15.1.0-2ubuntu1 [78.1 kB] 1330s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++6 amd64 15.1.0-2ubuntu1 [812 kB] 1330s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sensible-utils all 0.0.25 [25.0 kB] 1330s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libdebuginfod1t64 amd64 0.193-1 [21.3 kB] 1330s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libdw1t64 amd64 0.193-1 [283 kB] 1330s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libelf1t64 amd64 0.193-1 [58.6 kB] 1330s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dbus amd64 1.4.0-1 [102 kB] 1330s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 lto-disabled-list all 58 [12.4 kB] 1330s Preconfiguring packages ... 1330s Fetched 11.7 MB in 1s (8601 kB/s) 1331s (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 1332s Preparing to unpack .../libgcc-s1_15.1.0-2ubuntu1_amd64.deb ... 1332s Unpacking libgcc-s1:amd64 (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 1332s Setting up libgcc-s1:amd64 (15.1.0-2ubuntu1) ... 1332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 1332s Preparing to unpack .../libstdc++6_15.1.0-2ubuntu1_amd64.deb ... 1332s Unpacking libstdc++6:amd64 (15.1.0-2ubuntu1) over (15-20250404-0ubuntu1) ... 1332s Setting up libstdc++6:amd64 (15.1.0-2ubuntu1) ... 1332s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 1332s Preparing to unpack .../0-sensible-utils_0.0.25_all.deb ... 1332s Unpacking sensible-utils (0.0.25) over (0.0.24) ... 1332s Preparing to unpack .../1-libdebuginfod1t64_0.193-1_amd64.deb ... 1332s Unpacking libdebuginfod1t64:amd64 (0.193-1) over (0.192-4ubuntu1) ... 1332s Preparing to unpack .../2-libdw1t64_0.193-1_amd64.deb ... 1332s Unpacking libdw1t64:amd64 (0.193-1) over (0.192-4ubuntu1) ... 1332s Preparing to unpack .../3-libelf1t64_0.193-1_amd64.deb ... 1332s Unpacking libelf1t64:amd64 (0.193-1) over (0.192-4ubuntu1) ... 1332s Preparing to unpack .../4-python3-dbus_1.4.0-1_amd64.deb ... 1332s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ... 1332s Preparing to unpack .../5-lto-disabled-list_58_all.deb ... 1332s Unpacking lto-disabled-list (58) over (57) ... 1332s Setting up python3-dbus (1.4.0-1) ... 1332s Setting up lto-disabled-list (58) ... 1332s Setting up libdebuginfod-common (0.193-1) ... 1333s Setting up libelf1t64:amd64 (0.193-1) ... 1333s Setting up libdw1t64:amd64 (0.193-1) ... 1333s Setting up libatomic1:amd64 (15.1.0-2ubuntu1) ... 1333s Setting up perl-modules-5.40 (5.40.1-3) ... 1333s Setting up sensible-utils (0.0.25) ... 1333s Setting up libdebuginfod1t64:amd64 (0.193-1) ... 1333s Setting up libperl5.40:amd64 (5.40.1-3) ... 1333s Setting up perl (5.40.1-3) ... 1333s Processing triggers for man-db (2.13.1-1) ... 1333s Processing triggers for libc-bin (2.41-6ubuntu1) ... 1334s Reading package lists... 1334s Building dependency tree... 1334s Reading state information... 1334s Starting pkgProblemResolver with broken count: 0 1334s Starting 2 pkgProblemResolver with broken count: 0 1334s Done 1334s Solving dependencies... 1335s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1337s Reading package lists... 1338s Building dependency tree... 1338s Reading state information... 1338s Starting pkgProblemResolver with broken count: 0 1338s Starting 2 pkgProblemResolver with broken count: 0 1338s Done 1339s The following NEW packages will be installed: 1339s autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14 1339s cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit 1339s dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz 1339s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 1339s fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx 1339s fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 1339s gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian 1339s libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3 1339s libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0 1339s libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1 1339s libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 1339s libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev 1339s libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0 1339s libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 1339s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins 1339s libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 libinchi1.07 1339s libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 1339s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc 1339s libjs-underscore libjson-perl libjsoncpp26 liblapack3 liblbfgsb0 liblcms2-2 1339s liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3 1339s libmtdev1t64 libmunge2 libnetcdf22 libogg0 libopenbabel7 libopengl0 1339s libopenjp2-7 libopenmpi40 libpciaccess0 libpcre2-16-0 libpixman-1-0 1339s libpmix2t64 libproj25 libpsm-infinipath1 libpsm2-2 libpython3-all-dev 1339s libpython3-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 1339s libqt5gui5t64 libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0 1339s librdmacm1t64 libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2 1339s libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1 1339s libtiff6 libtk8.6 libtool libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt 1339s libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0 1339s libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 1339s libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0 1339s libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 1339s libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 1339s libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1 1339s libxss1 libxxf86vm1 libze1 m4 mesa-libgallium mpi-default-bin 1339s ocl-icd-libopencl1 openmpi-bin openmpi-common packmol po-debconf proj-data 1339s pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data 1339s python-pymatgen-doc python3-alabaster python3-all python3-all-dev 1339s python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson 1339s python3-build python3-cftime python3-contourpy python3-cycler 1339s python3-decorator python3-defusedxml python3-dev python3-dnspython 1339s python3-docutils python3-email-validator python3-fastjsonschema 1339s python3-fonttools python3-frozendict python3-fs python3-h5py 1339s python3-h5py-serial python3-imagesize python3-iniconfig python3-installer 1339s python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec 1339s python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py 1339s python3-mpmath python3-nbformat python3-netcdf4 python3-networkx 1339s python3-numpy python3-numpy-dev python3-openbabel python3-palettable 1339s python3-pandas python3-pandas-lib python3-phonopy python3-pil 1339s python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy 1339s python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen 1339s python3-pyproject-hooks python3-pytest python3-pytz python3-roman 1339s python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy 1339s python3-snowballstemmer python3-soupsieve python3-spglib python3-sphinx 1339s python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy 1339s python3-tabulate python3-tenacity python3-tk python3-toml python3-tqdm 1339s python3-traitlets python3-tz python3-ufolib2 python3-uncertainties 1339s python3-unicodedata2 python3-vtk9 python3-wheel python3.13-dev python3.13-tk 1339s sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data 1339s x11-common xml-core zlib1g-dev 1339s 0 upgraded, 293 newly installed, 0 to remove and 0 not upgraded. 1339s Need to get 552 MB of archives. 1339s After this operation, 2083 MB of additional disk space will be used. 1339s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-lato all 2.015-1 [2781 kB] 1340s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [147 kB] 1340s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 1340s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15.1.0-2ubuntu1 [924 kB] 1340s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 1340s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5383 kB] 1340s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 m4 amd64 1.4.19-8 [248 kB] 1340s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 1340s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 autotools-dev all 20240727.1 [43.4 kB] 1340s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 1340s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 autopoint all 0.23.1-2 [619 kB] 1340s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 1340s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 1340s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 1340s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 1340s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 1340s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 1340s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1340s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 1340s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1340s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 1340s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 1340s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 1340s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 1340s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 1340s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 1341s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 1341s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B] 1341s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB] 1341s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15.1.0-2ubuntu1 [47.1 kB] 1341s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15.1.0-2ubuntu1 [151 kB] 1341s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15.1.0-2ubuntu1 [29.5 kB] 1341s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15.1.0-2ubuntu1 [3070 kB] 1341s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15.1.0-2ubuntu1 [1360 kB] 1341s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15.1.0-2ubuntu1 [2758 kB] 1341s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15.1.0-2ubuntu1 [1210 kB] 1341s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15.1.0-2ubuntu1 [1685 kB] 1341s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15.1.0-2ubuntu1 [153 kB] 1341s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 1341s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 1342s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 1342s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B] 1342s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B] 1342s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 1342s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB] 1343s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB] 1343s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B] 1343s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B] 1343s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B] 1343s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu2 [2676 kB] 1343s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB] 1343s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libtool all 2.5.4-4 [168 kB] 1343s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 dh-autoreconf all 20 [16.1 kB] 1343s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB] 1343s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB] 1343s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B] 1343s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 debugedit amd64 1:5.1-2 [47.0 kB] 1343s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 dwz amd64 0.15-1build6 [115 kB] 1343s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 gettext amd64 0.23.1-2 [1017 kB] 1343s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] 1343s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 po-debconf all 1.0.21+nmu1 [233 kB] 1343s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 debhelper all 13.24.1ubuntu2 [895 kB] 1343s Get:63 http://ftpmaster.internal/ubuntu questing/universe amd64 dh-python all 6.20250414 [119 kB] 1343s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 sgml-base all 1.31+nmu1 [11.0 kB] 1343s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 xml-core all 0.19 [20.3 kB] 1343s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB] 1343s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 1343s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 1343s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 1343s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 1343s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 1343s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 1343s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 1344s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 1345s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 1345s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 1345s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 1345s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.2ubuntu1 [260 kB] 1345s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 1345s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 1345s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 1345s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 1345s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 1345s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 1345s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 1345s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 1345s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 1345s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [7968 B] 1345s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 1345s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 1345s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 1345s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 1345s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 1345s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 1345s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 1346s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 1346s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 1346s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libegl-mesa0 amd64 25.0.3-1ubuntu2 [136 kB] 1346s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 1346s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libexpat1-dev amd64 2.7.1-1 [148 kB] 1346s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 1346s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 1346s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 1346s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 1346s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.309.0-1 [145 kB] 1346s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 1346s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 1346s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 1346s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 1346s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 1346s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 1346s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 1346s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 1347s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 1347s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 1347s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 1347s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 1347s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 1347s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 1347s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-4 [175 kB] 1347s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 1347s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 1347s Get:123 http://ftpmaster.internal/ubuntu questing/universe amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [702 kB] 1347s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom-common all 2.14.0-1 [103 kB] 1347s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 1347s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libinput-bin amd64 1.28.1-1 [23.6 kB] 1347s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 1347s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libinput10 amd64 1.28.1-1 [144 kB] 1347s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 1347s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 1347s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 1347s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 1347s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 1347s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 1347s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 1347s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 libjson-perl all 4.10000-1 [81.9 kB] 1347s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 1347s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 1347s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 1347s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 1347s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 1347s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB] 1347s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 1347s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 1347s Get:145 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 1347s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB] 1347s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 1347s Get:148 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 1347s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 libze1 amd64 1.20.6-1 [515 kB] 1347s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 1347s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-4 [21.6 kB] 1347s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.7-1 [712 kB] 1347s Get:153 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 1347s Get:154 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 1347s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 1347s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 1347s Get:157 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 1347s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.6.0-1 [7955 kB] 1348s Get:159 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 1348s Get:160 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 1348s Get:161 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 1348s Get:162 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 1348s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.6.0-1 [1475 kB] 1348s Get:164 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 1348s Get:165 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3.13-dev amd64 3.13.3-1 [5507 kB] 1348s Get:166 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-dev amd64 3.13.3-1 [10.8 kB] 1348s Get:167 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-all-dev amd64 3.13.3-1 [906 B] 1348s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 1348s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 1348s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 1348s Get:171 http://ftpmaster.internal/ubuntu questing/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 1348s Get:172 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 1348s Get:173 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 1348s Get:174 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 1348s Get:175 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 1348s Get:176 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 1348s Get:177 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 1348s Get:178 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 1348s Get:179 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 1348s Get:180 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 1348s Get:181 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 1348s Get:182 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 1348s Get:183 http://ftpmaster.internal/ubuntu questing/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 1348s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 1348s Get:185 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 1349s Get:186 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 1349s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 libsymspg2 amd64 2.6.0-3 [210 kB] 1349s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 1349s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 1349s Get:190 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 1349s Get:191 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 1349s Get:192 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 1349s Get:193 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 1349s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB] 1349s Get:195 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-4ubuntu1 [182 kB] 1349s Get:196 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 1349s Get:197 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 1349s Get:198 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB] 1349s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 1349s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 1350s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 packmol amd64 1:21.0.1-1 [122 kB] 1350s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB] 1350s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-toml all 0.10.2-1 [16.5 kB] 1350s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB] 1350s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-build all 1.2.2-1 [31.0 kB] 1350s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB] 1350s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 pybuild-plugin-pyproject all 6.20250414 [1728 B] 1350s Get:208 http://ftpmaster.internal/ubuntu questing/universe amd64 pymatgen-test-files all 2025.2.18-1 [214 MB] 1357s Get:209 http://ftpmaster.internal/ubuntu questing/universe amd64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 1357s Get:210 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 1357s Get:211 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 1357s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 python-pymatgen-doc all 2025.2.18+dfsg1-4 [1186 kB] 1357s Get:213 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B] 1357s Get:214 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-dev amd64 3.13.3-1 [508 kB] 1357s Get:215 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dev amd64 3.13.3-1 [26.7 kB] 1357s Get:216 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all-dev amd64 3.13.3-1 [904 B] 1357s Get:217 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB] 1357s Get:218 http://ftpmaster.internal/ubuntu questing/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 1357s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB] 1358s Get:220 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-spglib amd64 2.6.0-3 [32.1 kB] 1358s Get:221 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 1358s Get:222 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 1358s Get:223 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-tk amd64 3.13.3-1 [107 kB] 1358s Get:224 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tk amd64 3.13.3-1 [9856 B] 1358s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B] 1358s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 1358s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 1358s Get:228 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB] 1358s Get:229 http://ftpmaster.internal/ubuntu questing/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 1358s Get:230 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 1358s Get:231 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lxml amd64 5.4.0-1 [1342 kB] 1358s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lz4 amd64 4.4.0+dfsg-2 [26.6 kB] 1358s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 1358s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 1358s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 1358s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB] 1358s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 1358s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB] 1358s Get:239 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB] 1358s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-matplotlib amd64 3.8.3-7build1 [17.4 MB] 1359s Get:241 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ase all 3.24.0-1 [1787 kB] 1359s Get:242 http://ftpmaster.internal/ubuntu questing/main amd64 python3-soupsieve all 2.7-1 [33.5 kB] 1359s Get:243 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bs4 all 4.13.4-1 [137 kB] 1359s Get:244 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bson all 4.10.1-5build1 [42.9 kB] 1359s Get:245 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cftime amd64 1.6.4-2 [233 kB] 1359s Get:246 http://ftpmaster.internal/ubuntu questing/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB] 1359s Get:247 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB] 1359s Get:248 http://ftpmaster.internal/ubuntu questing/main amd64 python3-roman all 5.0-1 [10.3 kB] 1359s Get:249 http://ftpmaster.internal/ubuntu questing/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB] 1359s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB] 1359s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 1359s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-frozendict all 2.4.6-1 [13.2 kB] 1359s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB] 1359s Get:254 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py all 3.13.0-1 [7978 B] 1359s Get:255 http://ftpmaster.internal/ubuntu questing/main amd64 python3-imagesize all 1.4.1-1 [6844 B] 1359s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 1359s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 1359s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 1359s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 1359s Get:260 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB] 1359s Get:261 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pytz all 2025.1-3 [162 kB] 1359s Get:262 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-9 [4949 kB] 1359s Get:263 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas all 2.2.3+dfsg-9 [3112 kB] 1360s Get:264 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic-core amd64 2.27.2-1build1 [1622 kB] 1360s Get:265 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB] 1360s Get:266 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-tqdm all 4.67.1-3 [91.6 kB] 1360s Get:267 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1build1 [164 kB] 1360s Get:268 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB] 1360s Get:269 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-monty all 2025.3.3-1 [40.4 kB] 1360s Get:270 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 1360s Get:271 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-netcdf4 amd64 1.7.2-1build4 [667 kB] 1360s Get:272 http://ftpmaster.internal/ubuntu questing/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB] 1360s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB] 1360s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB] 1360s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-phonopy amd64 2.38.1-1 [325 kB] 1360s Get:276 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tz all 2025.1-3 [1866 B] 1360s Get:277 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 1360s Get:278 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 1360s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 1360s Get:280 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB] 1360s Get:281 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 1360s Get:282 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-uncertainties all 3.2.3-1 [51.5 kB] 1360s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pymatgen amd64 2025.2.18+dfsg1-4 [2663 kB] 1360s Get:284 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest all 8.3.5-1 [252 kB] 1360s Get:285 http://ftpmaster.internal/ubuntu questing/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB] 1360s Get:286 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-common all 8.1.3-5 [663 kB] 1360s Get:287 http://ftpmaster.internal/ubuntu questing/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB] 1360s Get:288 http://ftpmaster.internal/ubuntu questing/main amd64 python3-sphinx all 8.1.3-5 [474 kB] 1360s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B] 1360s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB] 1360s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 1360s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpi4py amd64 4.0.3-3ubuntu1 [836 kB] 1360s Get:293 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-4ubuntu1 [7839 kB] 1361s Fetched 552 MB in 22s (25.1 MB/s) 1362s Selecting previously unselected package fonts-lato. 1362s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 1362s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 1362s Unpacking fonts-lato (2.015-1) ... 1362s Selecting previously unselected package python3-numpy-dev:amd64. 1362s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... 1362s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... 1362s Selecting previously unselected package libblas3:amd64. 1362s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... 1362s Unpacking libblas3:amd64 (3.12.1-2) ... 1362s Selecting previously unselected package libgfortran5:amd64. 1362s Preparing to unpack .../003-libgfortran5_15.1.0-2ubuntu1_amd64.deb ... 1362s Unpacking libgfortran5:amd64 (15.1.0-2ubuntu1) ... 1362s Selecting previously unselected package liblapack3:amd64. 1362s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... 1362s Unpacking liblapack3:amd64 (3.12.1-2) ... 1362s Selecting previously unselected package python3-numpy. 1362s Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... 1362s Unpacking python3-numpy (1:2.2.4+ds-1) ... 1362s Selecting previously unselected package m4. 1362s Preparing to unpack .../006-m4_1.4.19-8_amd64.deb ... 1362s Unpacking m4 (1.4.19-8) ... 1362s Selecting previously unselected package autoconf. 1362s Preparing to unpack .../007-autoconf_2.72-3ubuntu1_all.deb ... 1362s Unpacking autoconf (2.72-3ubuntu1) ... 1362s Selecting previously unselected package autotools-dev. 1362s Preparing to unpack .../008-autotools-dev_20240727.1_all.deb ... 1362s Unpacking autotools-dev (20240727.1) ... 1362s Selecting previously unselected package automake. 1362s Preparing to unpack .../009-automake_1%3a1.17-3ubuntu1_all.deb ... 1362s Unpacking automake (1:1.17-3ubuntu1) ... 1362s Selecting previously unselected package autopoint. 1362s Preparing to unpack .../010-autopoint_0.23.1-2_all.deb ... 1362s Unpacking autopoint (0.23.1-2) ... 1362s Selecting previously unselected package libtcl8.6:amd64. 1362s Preparing to unpack .../011-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 1362s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 1362s Selecting previously unselected package fonts-dejavu-mono. 1362s Preparing to unpack .../012-fonts-dejavu-mono_2.37-8_all.deb ... 1362s Unpacking fonts-dejavu-mono (2.37-8) ... 1362s Selecting previously unselected package fonts-dejavu-core. 1362s Preparing to unpack .../013-fonts-dejavu-core_2.37-8_all.deb ... 1362s Unpacking fonts-dejavu-core (2.37-8) ... 1363s Selecting previously unselected package fontconfig-config. 1363s Preparing to unpack .../014-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 1363s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 1363s Selecting previously unselected package libfontconfig1:amd64. 1363s Preparing to unpack .../015-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 1363s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 1363s Selecting previously unselected package libxrender1:amd64. 1363s Preparing to unpack .../016-libxrender1_1%3a0.9.12-1_amd64.deb ... 1363s Unpacking libxrender1:amd64 (1:0.9.12-1) ... 1363s Selecting previously unselected package libxft2:amd64. 1363s Preparing to unpack .../017-libxft2_2.3.6-1build1_amd64.deb ... 1363s Unpacking libxft2:amd64 (2.3.6-1build1) ... 1363s Selecting previously unselected package x11-common. 1363s Preparing to unpack .../018-x11-common_1%3a7.7+23ubuntu4_all.deb ... 1363s Unpacking x11-common (1:7.7+23ubuntu4) ... 1363s Selecting previously unselected package libxss1:amd64. 1363s Preparing to unpack .../019-libxss1_1%3a1.2.3-1build3_amd64.deb ... 1363s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 1363s Selecting previously unselected package libtk8.6:amd64. 1363s Preparing to unpack .../020-libtk8.6_8.6.16-1_amd64.deb ... 1363s Unpacking libtk8.6:amd64 (8.6.16-1) ... 1363s Selecting previously unselected package tk8.6-blt2.5. 1363s Preparing to unpack .../021-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ... 1363s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1363s Selecting previously unselected package blt. 1363s Preparing to unpack .../022-blt_2.5.3+dfsg-8_amd64.deb ... 1363s Unpacking blt (2.5.3+dfsg-8) ... 1363s Selecting previously unselected package libisl23:amd64. 1363s Preparing to unpack .../023-libisl23_0.27-1_amd64.deb ... 1363s Unpacking libisl23:amd64 (0.27-1) ... 1363s Selecting previously unselected package libmpc3:amd64. 1363s Preparing to unpack .../024-libmpc3_1.3.1-1build2_amd64.deb ... 1363s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 1363s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 1363s Preparing to unpack .../025-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 1363s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 1363s Selecting previously unselected package cpp-14. 1363s Preparing to unpack .../026-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 1363s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 1363s Selecting previously unselected package cpp-x86-64-linux-gnu. 1363s Preparing to unpack .../027-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1363s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1363s Selecting previously unselected package cpp. 1363s Preparing to unpack .../028-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ... 1363s Unpacking cpp (4:14.2.0-1ubuntu1) ... 1363s Selecting previously unselected package libcc1-0:amd64. 1363s Preparing to unpack .../029-libcc1-0_15.1.0-2ubuntu1_amd64.deb ... 1363s Unpacking libcc1-0:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libgomp1:amd64. 1364s Preparing to unpack .../030-libgomp1_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libgomp1:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libitm1:amd64. 1364s Preparing to unpack .../031-libitm1_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libitm1:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libasan8:amd64. 1364s Preparing to unpack .../032-libasan8_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libasan8:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package liblsan0:amd64. 1364s Preparing to unpack .../033-liblsan0_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking liblsan0:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libtsan2:amd64. 1364s Preparing to unpack .../034-libtsan2_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libtsan2:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libubsan1:amd64. 1364s Preparing to unpack .../035-libubsan1_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libubsan1:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libhwasan0:amd64. 1364s Preparing to unpack .../036-libhwasan0_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libhwasan0:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libquadmath0:amd64. 1364s Preparing to unpack .../037-libquadmath0_15.1.0-2ubuntu1_amd64.deb ... 1364s Unpacking libquadmath0:amd64 (15.1.0-2ubuntu1) ... 1364s Selecting previously unselected package libgcc-14-dev:amd64. 1364s Preparing to unpack .../038-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ... 1364s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 1364s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 1364s Preparing to unpack .../039-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 1364s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 1364s Selecting previously unselected package gcc-14. 1364s Preparing to unpack .../040-gcc-14_14.2.0-19ubuntu2_amd64.deb ... 1364s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 1364s Selecting previously unselected package gcc-x86-64-linux-gnu. 1364s Preparing to unpack .../041-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1364s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1364s Selecting previously unselected package gcc. 1364s Preparing to unpack .../042-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ... 1364s Unpacking gcc (4:14.2.0-1ubuntu1) ... 1364s Selecting previously unselected package libstdc++-14-dev:amd64. 1364s Preparing to unpack .../043-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ... 1364s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 1365s Selecting previously unselected package g++-14-x86-64-linux-gnu. 1365s Preparing to unpack .../044-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 1365s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 1365s Selecting previously unselected package g++-14. 1365s Preparing to unpack .../045-g++-14_14.2.0-19ubuntu2_amd64.deb ... 1365s Unpacking g++-14 (14.2.0-19ubuntu2) ... 1365s Selecting previously unselected package g++-x86-64-linux-gnu. 1365s Preparing to unpack .../046-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ... 1365s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1365s Selecting previously unselected package g++. 1365s Preparing to unpack .../047-g++_4%3a14.2.0-1ubuntu1_amd64.deb ... 1365s Unpacking g++ (4:14.2.0-1ubuntu1) ... 1365s Selecting previously unselected package build-essential. 1365s Preparing to unpack .../048-build-essential_12.12ubuntu1_amd64.deb ... 1365s Unpacking build-essential (12.12ubuntu1) ... 1365s Selecting previously unselected package cython3. 1365s Preparing to unpack .../049-cython3_3.0.11+dfsg-2ubuntu2_amd64.deb ... 1365s Unpacking cython3 (3.0.11+dfsg-2ubuntu2) ... 1365s Selecting previously unselected package libdebhelper-perl. 1365s Preparing to unpack .../050-libdebhelper-perl_13.24.1ubuntu2_all.deb ... 1365s Unpacking libdebhelper-perl (13.24.1ubuntu2) ... 1365s Selecting previously unselected package libtool. 1365s Preparing to unpack .../051-libtool_2.5.4-4_all.deb ... 1365s Unpacking libtool (2.5.4-4) ... 1365s Selecting previously unselected package dh-autoreconf. 1365s Preparing to unpack .../052-dh-autoreconf_20_all.deb ... 1365s Unpacking dh-autoreconf (20) ... 1365s Selecting previously unselected package libarchive-zip-perl. 1365s Preparing to unpack .../053-libarchive-zip-perl_1.68-1_all.deb ... 1365s Unpacking libarchive-zip-perl (1.68-1) ... 1365s Selecting previously unselected package libfile-stripnondeterminism-perl. 1365s Preparing to unpack .../054-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 1365s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... 1365s Selecting previously unselected package dh-strip-nondeterminism. 1365s Preparing to unpack .../055-dh-strip-nondeterminism_1.14.1-2_all.deb ... 1365s Unpacking dh-strip-nondeterminism (1.14.1-2) ... 1365s Selecting previously unselected package debugedit. 1365s Preparing to unpack .../056-debugedit_1%3a5.1-2_amd64.deb ... 1365s Unpacking debugedit (1:5.1-2) ... 1365s Selecting previously unselected package dwz. 1365s Preparing to unpack .../057-dwz_0.15-1build6_amd64.deb ... 1365s Unpacking dwz (0.15-1build6) ... 1365s Selecting previously unselected package gettext. 1365s Preparing to unpack .../058-gettext_0.23.1-2_amd64.deb ... 1365s Unpacking gettext (0.23.1-2) ... 1365s Selecting previously unselected package intltool-debian. 1365s Preparing to unpack .../059-intltool-debian_0.35.0+20060710.6_all.deb ... 1365s Unpacking intltool-debian (0.35.0+20060710.6) ... 1365s Selecting previously unselected package po-debconf. 1365s Preparing to unpack .../060-po-debconf_1.0.21+nmu1_all.deb ... 1365s Unpacking po-debconf (1.0.21+nmu1) ... 1365s Selecting previously unselected package debhelper. 1365s Preparing to unpack .../061-debhelper_13.24.1ubuntu2_all.deb ... 1365s Unpacking debhelper (13.24.1ubuntu2) ... 1365s Selecting previously unselected package dh-python. 1365s Preparing to unpack .../062-dh-python_6.20250414_all.deb ... 1365s Unpacking dh-python (6.20250414) ... 1366s Selecting previously unselected package sgml-base. 1366s Preparing to unpack .../063-sgml-base_1.31+nmu1_all.deb ... 1366s Unpacking sgml-base (1.31+nmu1) ... 1366s Selecting previously unselected package xml-core. 1366s Preparing to unpack .../064-xml-core_0.19_all.deb ... 1366s Unpacking xml-core (0.19) ... 1366s Selecting previously unselected package docutils-common. 1366s Preparing to unpack .../065-docutils-common_0.21.2+dfsg-2_all.deb ... 1366s Unpacking docutils-common (0.21.2+dfsg-2) ... 1366s Selecting previously unselected package fontconfig. 1366s Preparing to unpack .../066-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 1366s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 1366s Selecting previously unselected package fonts-font-awesome. 1366s Preparing to unpack .../067-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 1366s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1366s Selecting previously unselected package fonts-glyphicons-halflings. 1366s Preparing to unpack .../068-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 1366s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1366s Selecting previously unselected package fonts-lyx. 1366s Preparing to unpack .../069-fonts-lyx_2.4.3-1_all.deb ... 1366s Unpacking fonts-lyx (2.4.3-1) ... 1366s Selecting previously unselected package fonts-mathjax. 1366s Preparing to unpack .../070-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 1366s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 1366s Selecting previously unselected package libaec0:amd64. 1366s Preparing to unpack .../071-libaec0_1.1.3-1_amd64.deb ... 1366s Unpacking libaec0:amd64 (1.1.3-1) ... 1366s Selecting previously unselected package libllvm17t64:amd64. 1366s Preparing to unpack .../072-libllvm17t64_1%3a17.0.6-21_amd64.deb ... 1366s Unpacking libllvm17t64:amd64 (1:17.0.6-21) ... 1366s Selecting previously unselected package libamd-comgr2:amd64. 1366s Preparing to unpack .../073-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 1366s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1367s Selecting previously unselected package libhsakmt1:amd64. 1367s Preparing to unpack .../074-libhsakmt1_5.7.0-1build1_amd64.deb ... 1367s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 1367s Selecting previously unselected package libhsa-runtime64-1. 1367s Preparing to unpack .../075-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 1367s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1367s Selecting previously unselected package libamdhip64-5. 1367s Preparing to unpack .../076-libamdhip64-5_5.7.1-5.1_amd64.deb ... 1367s Unpacking libamdhip64-5 (5.7.1-5.1) ... 1367s Selecting previously unselected package libboost-iostreams1.83.0:amd64. 1367s Preparing to unpack .../077-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 1367s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 1367s Selecting previously unselected package libpixman-1-0:amd64. 1367s Preparing to unpack .../078-libpixman-1-0_0.44.0-3_amd64.deb ... 1367s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 1367s Selecting previously unselected package libxcb-render0:amd64. 1367s Preparing to unpack .../079-libxcb-render0_1.17.0-2_amd64.deb ... 1367s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 1367s Selecting previously unselected package libxcb-shm0:amd64. 1367s Preparing to unpack .../080-libxcb-shm0_1.17.0-2_amd64.deb ... 1367s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 1367s Selecting previously unselected package libcairo2:amd64. 1367s Preparing to unpack .../081-libcairo2_1.18.4-1_amd64.deb ... 1367s Unpacking 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package libxcb-xfixes0:amd64. 1367s Preparing to unpack .../092-libxcb-xfixes0_1.17.0-2_amd64.deb ... 1367s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 1367s Selecting previously unselected package libxshmfence1:amd64. 1367s Preparing to unpack .../093-libxshmfence1_1.3.3-1_amd64.deb ... 1367s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 1367s Selecting previously unselected package mesa-libgallium:amd64. 1367s Preparing to unpack .../094-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ... 1367s Unpacking mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 1368s Selecting previously unselected package libgbm1:amd64. 1368s Preparing to unpack .../095-libgbm1_25.0.3-1ubuntu2_amd64.deb ... 1368s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ... 1368s Selecting previously unselected package libwayland-client0:amd64. 1368s Preparing to unpack .../096-libwayland-client0_1.23.1-3_amd64.deb ... 1368s Unpacking libwayland-client0:amd64 (1.23.1-3) ... 1368s Selecting previously unselected package 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unselected package librdmacm1t64:amd64. 1368s Preparing to unpack .../102-librdmacm1t64_56.0-4ubuntu1_amd64.deb ... 1368s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ... 1368s Selecting previously unselected package libfabric1:amd64. 1368s Preparing to unpack .../103-libfabric1_1.17.0-3.1_amd64.deb ... 1368s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 1368s Selecting previously unselected package libvulkan1:amd64. 1368s Preparing to unpack .../104-libvulkan1_1.4.309.0-1_amd64.deb ... 1368s Unpacking libvulkan1:amd64 (1.4.309.0-1) ... 1368s Selecting previously unselected package libgl1-mesa-dri:amd64. 1368s Preparing to unpack .../105-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ... 1368s Unpacking libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 1368s Selecting previously unselected package libglvnd0:amd64. 1368s Preparing to unpack .../106-libglvnd0_1.7.0-1build1_amd64.deb ... 1368s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 1368s Selecting previously unselected package 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libogg0:amd64. 1369s Preparing to unpack .../144-libogg0_1.3.5-3build1_amd64.deb ... 1369s Unpacking libogg0:amd64 (1.3.5-3build1) ... 1369s Selecting previously unselected package libopenbabel7. 1369s Preparing to unpack .../145-libopenbabel7_3.1.1+dfsg-11ubuntu3_amd64.deb ... 1369s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 1369s Selecting previously unselected package libmunge2:amd64. 1369s Preparing to unpack .../146-libmunge2_0.5.16-1_amd64.deb ... 1369s Unpacking libmunge2:amd64 (0.5.16-1) ... 1369s Selecting previously unselected package libxnvctrl0:amd64. 1369s Preparing to unpack .../147-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 1369s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 1369s Selecting previously unselected package libze1:amd64. 1369s Preparing to unpack .../148-libze1_1.20.6-1_amd64.deb ... 1369s Unpacking libze1:amd64 (1.20.6-1) ... 1369s Selecting previously unselected package ocl-icd-libopencl1:amd64. 1369s Preparing to unpack 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package libegl1:amd64. 1370s Preparing to unpack .../170-libegl1_1.7.0-1build1_amd64.deb ... 1370s Unpacking libegl1:amd64 (1.7.0-1build1) ... 1370s Selecting previously unselected package libqt5network5t64:amd64. 1370s Preparing to unpack .../171-libqt5network5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 1370s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 1370s Selecting previously unselected package libsm6:amd64. 1370s Preparing to unpack .../172-libsm6_2%3a1.2.6-1_amd64.deb ... 1370s Unpacking libsm6:amd64 (2:1.2.6-1) ... 1370s Selecting previously unselected package libxcb-icccm4:amd64. 1371s Preparing to unpack .../173-libxcb-icccm4_0.4.2-1_amd64.deb ... 1371s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 1371s Selecting previously unselected package libxcb-util1:amd64. 1371s Preparing to unpack .../174-libxcb-util1_0.4.1-1_amd64.deb ... 1371s Unpacking libxcb-util1:amd64 (0.4.1-1) ... 1371s Selecting previously unselected package libxcb-image0:amd64. 1371s Preparing to unpack .../175-libxcb-image0_0.4.0-2build1_amd64.deb ... 1371s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 1371s Selecting previously unselected package libxcb-keysyms1:amd64. 1371s Preparing to unpack .../176-libxcb-keysyms1_0.4.1-1_amd64.deb ... 1371s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ... 1371s Selecting previously unselected package libxcb-render-util0:amd64. 1371s Preparing to unpack .../177-libxcb-render-util0_0.3.10-1_amd64.deb ... 1371s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ... 1371s Selecting previously unselected package libxcb-shape0:amd64. 1371s Preparing to unpack .../178-libxcb-shape0_1.17.0-2_amd64.deb ... 1371s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 1371s Selecting previously unselected package libxcb-xinerama0:amd64. 1371s Preparing to unpack .../179-libxcb-xinerama0_1.17.0-2_amd64.deb ... 1371s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 1371s Selecting previously unselected package libxcb-xinput0:amd64. 1371s Preparing to unpack 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Selecting previously unselected package python3-pyproject-hooks. 1372s Preparing to unpack .../201-python3-pyproject-hooks_1.2.0-1_all.deb ... 1372s Unpacking python3-pyproject-hooks (1.2.0-1) ... 1372s Selecting previously unselected package python3-toml. 1372s Preparing to unpack .../202-python3-toml_0.10.2-1_all.deb ... 1372s Unpacking python3-toml (0.10.2-1) ... 1372s Selecting previously unselected package python3-wheel. 1372s Preparing to unpack .../203-python3-wheel_0.45.1-1_all.deb ... 1372s Unpacking python3-wheel (0.45.1-1) ... 1372s Selecting previously unselected package python3-build. 1372s Preparing to unpack .../204-python3-build_1.2.2-1_all.deb ... 1372s Unpacking python3-build (1.2.2-1) ... 1372s Selecting previously unselected package python3-installer. 1372s Preparing to unpack .../205-python3-installer_0.7.0+dfsg1-3_all.deb ... 1372s Unpacking python3-installer (0.7.0+dfsg1-3) ... 1372s Selecting previously unselected package pybuild-plugin-pyproject. 1372s Preparing to unpack .../206-pybuild-plugin-pyproject_6.20250414_all.deb ... 1372s Unpacking pybuild-plugin-pyproject (6.20250414) ... 1372s Selecting previously unselected package pymatgen-test-files. 1372s Preparing to unpack .../207-pymatgen-test-files_2025.2.18-1_all.deb ... 1372s Unpacking pymatgen-test-files (2025.2.18-1) ... 1374s Selecting previously unselected package python-matplotlib-data. 1374s Preparing to unpack .../208-python-matplotlib-data_3.8.3-7build1_all.deb ... 1374s Unpacking python-matplotlib-data (3.8.3-7build1) ... 1374s Selecting previously unselected package libjs-mathjax. 1374s Preparing to unpack .../209-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 1374s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 1375s Selecting previously unselected package sphinx-rtd-theme-common. 1375s Preparing to unpack .../210-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 1375s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 1375s Selecting previously unselected package python-pymatgen-doc. 1375s Preparing to unpack .../211-python-pymatgen-doc_2025.2.18+dfsg1-4_all.deb ... 1375s Unpacking python-pymatgen-doc (2025.2.18+dfsg1-4) ... 1375s Selecting previously unselected package python3-all. 1375s Preparing to unpack .../212-python3-all_3.13.3-1_amd64.deb ... 1375s Unpacking python3-all (3.13.3-1) ... 1375s Selecting previously unselected package python3.13-dev. 1375s Preparing to unpack .../213-python3.13-dev_3.13.3-1_amd64.deb ... 1375s Unpacking python3.13-dev (3.13.3-1) ... 1375s Selecting previously unselected package python3-dev. 1375s Preparing to unpack .../214-python3-dev_3.13.3-1_amd64.deb ... 1375s Unpacking python3-dev (3.13.3-1) ... 1375s Selecting previously unselected package python3-all-dev. 1375s Preparing to unpack .../215-python3-all-dev_3.13.3-1_amd64.deb ... 1375s Unpacking python3-all-dev (3.13.3-1) ... 1375s Selecting previously unselected package python3-annotated-types. 1375s Preparing to unpack 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python3-pil:amd64 (11.1.0-5build1) ... 1376s Selecting previously unselected package python3.13-tk. 1376s Preparing to unpack .../222-python3.13-tk_3.13.3-1_amd64.deb ... 1376s Unpacking python3.13-tk (3.13.3-1) ... 1376s Selecting previously unselected package python3-tk:amd64. 1376s Preparing to unpack .../223-python3-tk_3.13.3-1_amd64.deb ... 1376s Unpacking python3-tk:amd64 (3.13.3-1) ... 1376s Selecting previously unselected package python3-pil.imagetk:amd64. 1376s Preparing to unpack .../224-python3-pil.imagetk_11.1.0-5build1_amd64.deb ... 1376s Unpacking python3-pil.imagetk:amd64 (11.1.0-5build1) ... 1376s Selecting previously unselected package python3-contourpy. 1376s Preparing to unpack .../225-python3-contourpy_1.3.1-1build1_amd64.deb ... 1376s Unpacking python3-contourpy (1.3.1-1build1) ... 1376s Selecting previously unselected package python3-cycler. 1376s Preparing to unpack .../226-python3-cycler_0.12.1-1_all.deb ... 1376s Unpacking python3-cycler (0.12.1-1) ... 1376s Selecting previously unselected package python3-brotli. 1376s Preparing to unpack .../227-python3-brotli_1.1.0-2build4_amd64.deb ... 1376s Unpacking python3-brotli (1.1.0-2build4) ... 1376s Selecting previously unselected package python3-platformdirs. 1376s Preparing to unpack .../228-python3-platformdirs_4.3.7-1_all.deb ... 1376s Unpacking python3-platformdirs (4.3.7-1) ... 1376s Selecting previously unselected package python3-fs. 1376s Preparing to unpack .../229-python3-fs_2.4.16-7_all.deb ... 1376s Unpacking python3-fs (2.4.16-7) ... 1376s Selecting previously unselected package python3-lxml:amd64. 1376s Preparing to unpack .../230-python3-lxml_5.4.0-1_amd64.deb ... 1376s Unpacking python3-lxml:amd64 (5.4.0-1) ... 1376s Selecting previously unselected package python3-lz4. 1376s Preparing to unpack .../231-python3-lz4_4.4.0+dfsg-2_amd64.deb ... 1376s Unpacking python3-lz4 (4.4.0+dfsg-2) ... 1376s Selecting previously unselected package python3-mpmath. 1376s Preparing to unpack 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unselected package python3-bson. 1377s Preparing to unpack .../243-python3-bson_4.10.1-5build1_all.deb ... 1377s Unpacking python3-bson (4.10.1-5build1) ... 1377s Selecting previously unselected package python3-cftime. 1377s Preparing to unpack .../244-python3-cftime_1.6.4-2_amd64.deb ... 1377s Unpacking python3-cftime (1.6.4-2) ... 1377s Selecting previously unselected package python3-defusedxml. 1377s Preparing to unpack .../245-python3-defusedxml_0.7.1-3_all.deb ... 1377s Unpacking python3-defusedxml (0.7.1-3) ... 1377s Selecting previously unselected package python3-dnspython. 1378s Preparing to unpack .../246-python3-dnspython_2.7.0-1ubuntu1_all.deb ... 1378s Unpacking python3-dnspython (2.7.0-1ubuntu1) ... 1378s Selecting previously unselected package python3-roman. 1378s Preparing to unpack .../247-python3-roman_5.0-1_all.deb ... 1378s Unpacking python3-roman (5.0-1) ... 1378s Selecting previously unselected package python3-docutils. 1378s Preparing to unpack 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(2.27.2-1build1) ... 1379s Selecting previously unselected package python3-pydantic. 1379s Preparing to unpack .../264-python3-pydantic_2.10.6-1_amd64.deb ... 1379s Unpacking python3-pydantic (2.10.6-1) ... 1379s Selecting previously unselected package python3-tqdm. 1379s Preparing to unpack .../265-python3-tqdm_4.67.1-3_all.deb ... 1379s Unpacking python3-tqdm (4.67.1-3) ... 1379s Selecting previously unselected package python3-ruamel.yaml.clib. 1379s Preparing to unpack .../266-python3-ruamel.yaml.clib_0.2.12+ds-1build1_amd64.deb ... 1379s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 1379s Selecting previously unselected package python3-ruamel.yaml. 1379s Preparing to unpack .../267-python3-ruamel.yaml_0.18.10+ds-1_all.deb ... 1379s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ... 1379s Selecting previously unselected package python3-monty. 1379s Preparing to unpack .../268-python3-monty_2025.3.3-1_all.deb ... 1379s Unpacking python3-monty (2025.3.3-1) ... 1379s Selecting previously unselected package python3-nbformat. 1379s Preparing to unpack .../269-python3-nbformat_5.9.1-1_all.deb ... 1379s Unpacking python3-nbformat (5.9.1-1) ... 1379s Selecting previously unselected package python3-netcdf4. 1379s Preparing to unpack .../270-python3-netcdf4_1.7.2-1build4_amd64.deb ... 1379s Unpacking python3-netcdf4 (1.7.2-1build4) ... 1379s Selecting previously unselected package python3-networkx. 1379s Preparing to unpack .../271-python3-networkx_3.2.1-4ubuntu1_all.deb ... 1379s Unpacking python3-networkx (3.2.1-4ubuntu1) ... 1379s Selecting previously unselected package python3-openbabel. 1379s Preparing to unpack .../272-python3-openbabel_3.1.1+dfsg-11ubuntu3_amd64.deb ... 1379s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 1379s Selecting previously unselected package python3-palettable. 1379s Preparing to unpack .../273-python3-palettable_3.3.3-1_all.deb ... 1379s Unpacking python3-palettable (3.3.3-1) ... 1379s Selecting previously unselected package python3-phonopy. 1379s Preparing to unpack .../274-python3-phonopy_2.38.1-1_amd64.deb ... 1379s Unpacking python3-phonopy (2.38.1-1) ... 1379s Selecting previously unselected package python3-tz. 1379s Preparing to unpack .../275-python3-tz_2025.1-3_all.deb ... 1379s Unpacking python3-tz (2025.1-3) ... 1379s Selecting previously unselected package python3-tenacity. 1379s Preparing to unpack .../276-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 1379s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 1380s Selecting previously unselected package python3-plotly. 1380s Preparing to unpack .../277-python3-plotly_5.20.0+dfsg-1_all.deb ... 1380s Unpacking python3-plotly (5.20.0+dfsg-1) ... 1381s Selecting previously unselected package python3-pluggy. 1381s Preparing to unpack .../278-python3-pluggy_1.5.0-1_all.deb ... 1381s Unpacking python3-pluggy (1.5.0-1) ... 1381s Selecting previously unselected package python3-pybtex. 1381s Preparing to unpack .../279-python3-pybtex_0.24.0-4_all.deb ... 1381s Unpacking python3-pybtex (0.24.0-4) ... 1381s Selecting previously unselected package python3-tabulate. 1381s Preparing to unpack .../280-python3-tabulate_0.9.0-1_all.deb ... 1381s Unpacking python3-tabulate (0.9.0-1) ... 1381s Selecting previously unselected package python3-uncertainties. 1381s Preparing to unpack .../281-python3-uncertainties_3.2.3-1_all.deb ... 1381s Unpacking python3-uncertainties (3.2.3-1) ... 1381s Selecting previously unselected package python3-pymatgen. 1381s Preparing to unpack .../282-python3-pymatgen_2025.2.18+dfsg1-4_amd64.deb ... 1381s Unpacking python3-pymatgen (2025.2.18+dfsg1-4) ... 1381s Selecting previously unselected package python3-pytest. 1381s Preparing to unpack .../283-python3-pytest_8.3.5-1_all.deb ... 1381s Unpacking python3-pytest (8.3.5-1) ... 1381s Selecting previously unselected package python3-snowballstemmer. 1381s Preparing to unpack .../284-python3-snowballstemmer_2.2.0-4build1_all.deb ... 1381s Unpacking python3-snowballstemmer (2.2.0-4build1) ... 1381s Selecting previously unselected package sphinx-common. 1381s Preparing to unpack .../285-sphinx-common_8.1.3-5_all.deb ... 1381s Unpacking sphinx-common (8.1.3-5) ... 1381s Selecting previously unselected package python3-alabaster. 1381s Preparing to unpack .../286-python3-alabaster_0.7.16-0.1_all.deb ... 1381s Unpacking python3-alabaster (0.7.16-0.1) ... 1381s Selecting previously unselected package python3-sphinx. 1381s Preparing to unpack .../287-python3-sphinx_8.1.3-5_all.deb ... 1381s Unpacking python3-sphinx (8.1.3-5) ... 1381s Selecting previously unselected package python3-sphinxcontrib.jquery. 1381s Preparing to unpack .../288-python3-sphinxcontrib.jquery_4.1-5_all.deb ... 1381s Unpacking python3-sphinxcontrib.jquery (4.1-5) ... 1381s Selecting previously unselected package python3-sphinx-rtd-theme. 1381s Preparing to unpack .../289-python3-sphinx-rtd-theme_3.0.2+dfsg-2_all.deb ... 1381s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 1381s Selecting previously unselected package mpi-default-bin. 1381s Preparing to unpack .../290-mpi-default-bin_1.18_amd64.deb ... 1381s Unpacking mpi-default-bin (1.18) ... 1381s Selecting previously unselected package python3-mpi4py. 1381s Preparing to unpack .../291-python3-mpi4py_4.0.3-3ubuntu1_amd64.deb ... 1381s Unpacking python3-mpi4py (4.0.3-3ubuntu1) ... 1382s Selecting previously unselected package python3-vtk9. 1382s Preparing to unpack .../292-python3-vtk9_9.3.0+dfsg1-4ubuntu1_amd64.deb ... 1382s Unpacking python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ... 1382s Setting up dh-python (6.20250414) ... 1382s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 1382s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 1382s Setting up liblcms2-2:amd64 (2.16-2) ... 1382s Setting up python3-iniconfig (1.1.1-2) ... 1382s Setting up libtbbmalloc2:amd64 (2022.0.0-2) ... 1382s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 1382s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 1382s Setting up libwayland-server0:amd64 (1.23.1-3) ... 1382s Setting up libx11-xcb1:amd64 (2:1.8.12-1) ... 1382s Setting up libpciaccess0:amd64 (0.17-3build1) ... 1382s Setting up libdouble-conversion3:amd64 (3.3.1-1) ... 1382s Setting up fonts-lato (2.015-1) ... 1382s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 1382s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 1382s Setting up python3-pydantic-core (2.27.2-1build1) ... 1382s Setting up libogg0:amd64 (1.3.5-3build1) ... 1382s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 1382s Setting up proj-data (9.6.0-1) ... 1382s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 1382s Setting up libxcb-xinput0:amd64 (1.17.0-2) ... 1382s Setting up libxrender1:amd64 (1:0.9.12-1) ... 1382s Setting up python3-joblib (1.4.2-3) ... 1382s Setting up python3-lz4 (4.4.0+dfsg-2) ... 1382s Setting up libxcb-render0:amd64 (1.17.0-2) ... 1382s Setting up python3-defusedxml (0.7.1-3) ... 1383s Setting up libarchive-zip-perl (1.68-1) ... 1383s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 1383s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 1383s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 1383s Setting up python3-alabaster (0.7.16-0.1) ... 1383s Setting up python3-unicodedata2 (15.1.0+ds-1build3) ... 1383s Setting up fonts-lyx (2.4.3-1) ... 1383s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 1383s Setting up python3-tenacity (9.0.0-0ubuntu1) ... 1383s Setting up libdebhelper-perl (13.24.1ubuntu2) ... 1383s Setting up python3-tqdm (4.67.1-3) ... 1383s Setting up libdrm-intel1:amd64 (2.4.124-2) ... 1383s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ... 1383s Setting up libxcb-shape0:amd64 (1.17.0-2) ... 1383s Setting up python3-ruamel.yaml.clib (0.2.12+ds-1build1) ... 1383s Setting up x11-common (1:7.7+23ubuntu4) ... 1383s Setting up python3-frozendict (2.4.6-1) ... 1383s Setting up libibumad3:amd64 (56.0-4ubuntu1) ... 1383s Setting up libdeflate0:amd64 (1.23-2) ... 1383s Setting up python3-tabulate (0.9.0-1) ... 1384s Setting up m4 (1.4.19-8) ... 1384s Setting up python3-latexcodec (3.0.0-1) ... 1384s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 1384s Setting up libxcb-render-util0:amd64 (0.3.10-1) ... 1384s Setting up python3-all (3.13.3-1) ... 1384s Setting up python3-pytz (2025.1-3) ... 1384s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 1384s Setting up libibmad5:amd64 (56.0-4ubuntu1) ... 1384s Setting up libxcb-icccm4:amd64 (0.4.2-1) ... 1384s Setting up libgomp1:amd64 (15.1.0-2ubuntu1) ... 1384s Setting up python3-networkx (3.2.1-4ubuntu1) ... 1385s Setting up python3-wheel (0.45.1-1) ... 1385s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 1385s Setting up python3-annotated-types (0.7.0-1) ... 1385s Setting up libpcre2-16-0:amd64 (10.45-1) ... 1385s Setting up libaec0:amd64 (1.1.3-1) ... 1385s Setting up python3-platformdirs (4.3.7-1) ... 1385s Setting up libze1:amd64 (1.20.6-1) ... 1385s Setting up libopengl0:amd64 (1.7.0-1build1) ... 1385s Setting up python3-tz (2025.1-3) ... 1385s Setting up libxcb-util1:amd64 (0.4.1-1) ... 1385s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 1385s Setting up libxcb-xkb1:amd64 (1.17.0-2) ... 1385s Setting up libxcb-image0:amd64 (0.4.0-2build1) ... 1385s Setting up python3-fs (2.4.16-7) ... 1385s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 1385s Setting up libxcb-present0:amd64 (1.17.0-2) ... 1385s Setting up unicode-data (15.1.0-1) ... 1385s Setting up libsymspg2:amd64 (2.6.0-3) ... 1385s Setting up python3-bson (4.10.1-5build1) ... 1386s Setting up python3-palettable (3.3.3-1) ... 1386s Setting up python3-roman (5.0-1) ... 1386s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 1386s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 1386s Setting up python3-decorator (5.2.1-2) ... 1386s Setting up autotools-dev (20240727.1) ... 1386s Setting up libblas3:amd64 (3.12.1-2) ... 1386s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 1386s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ... 1386s Setting up libmunge2:amd64 (0.5.16-1) ... 1386s Setting up libllvm17t64:amd64 (1:17.0.6-21) ... 1386s Setting up libexpat1-dev:amd64 (2.7.1-1) ... 1386s Setting up python3-pyproject-hooks (1.2.0-1) ... 1386s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 1386s Setting up python3-snowballstemmer (2.2.0-4build1) ... 1387s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ... 1387s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 1387s Setting up python3-brotli (1.1.0-2build4) ... 1387s Setting up liblzf1:amd64 (3.6-4) ... 1387s Setting up libquadmath0:amd64 (15.1.0-2ubuntu1) ... 1387s Setting up python3-cycler (0.12.1-1) ... 1387s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 1387s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ... 1387s Setting up fonts-dejavu-mono (2.37-8) ... 1387s Setting up python3-kiwisolver (1.4.7-3build1) ... 1387s Setting up libhwloc15:amd64 (2.12.0-4) ... 1387s Setting up libmpc3:amd64 (1.3.1-1build2) ... 1387s Setting up python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... 1387s Setting up cython3 (3.0.11+dfsg-2ubuntu2) ... 1388s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 1388s Setting up autopoint (0.23.1-2) ... 1388s Setting up fonts-dejavu-core (2.37-8) ... 1388s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 1388s Setting up python3-toml (0.10.2-1) ... 1388s Setting up python3-installer (0.7.0+dfsg1-3) ... 1388s Setting up libgfortran5:amd64 (15.1.0-2ubuntu1) ... 1388s Setting up libvulkan1:amd64 (1.4.309.0-1) ... 1388s Setting up autoconf (2.72-3ubuntu1) ... 1388s Setting up python3-pluggy (1.5.0-1) ... 1388s Setting up libwebp7:amd64 (1.5.0-0.1) ... 1388s Setting up python3-pybtex (0.24.0-4) ... 1388s Setting up libubsan1:amd64 (15.1.0-2ubuntu1) ... 1388s Setting up python3-fastjsonschema (2.21.1-1) ... 1388s Setting up python3-ruamel.yaml (0.18.10+ds-1) ... 1388s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 1388s Setting up dwz (0.15-1build6) ... 1388s Setting up libmtdev1t64:amd64 (1.1.7-1) ... 1388s Setting up ocl-icd-libopencl1:amd64 (2.3.3-1) ... 1388s Setting up libxshmfence1:amd64 (1.3.3-1) ... 1388s Setting up libhwasan0:amd64 (15.1.0-2ubuntu1) ... 1388s Setting up python3-dnspython (2.7.0-1ubuntu1) ... 1389s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 1389s Setting up python3-traitlets (5.14.3+really5.14.3-1) ... 1389s Setting up libasan8:amd64 (15.1.0-2ubuntu1) ... 1389s Setting up libjson-perl (4.10000-1) ... 1389s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 1389s Setting up libpsm2-2 (11.2.185-2.1) ... 1389s Setting up openmpi-common (5.0.7-1) ... 1389s Setting up debugedit (1:5.1-2) ... 1389s Setting up libmd4c0:amd64 (0.5.2-2) ... 1389s Setting up librdmacm1t64:amd64 (56.0-4ubuntu1) ... 1389s Setting up libopenjp2-7:amd64 (2.5.3-2) ... 1389s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 1389s Setting up python3-email-validator (2.2.0-1) ... 1389s Setting up sgml-base (1.31+nmu1) ... 1389s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1389s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 1389s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 1389s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 1389s Setting up libtsan2:amd64 (15.1.0-2ubuntu1) ... 1389s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 1389s Setting up python3-mpmath (1.3.0-1) ... 1389s Setting up libisl23:amd64 (0.27-1) ... 1389s Setting up python3-build (1.2.2-1) ... 1390s Setting up python-matplotlib-data (3.8.3-7build1) ... 1390s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 1390s Setting up libinchi1.07 (1.07.3+dfsg-1) ... 1390s Setting up python3-soupsieve (2.7-1) ... 1390s Setting up pymatgen-test-files (2025.2.18-1) ... 1390s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 1390s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 1390s Setting up libcc1-0:amd64 (15.1.0-2ubuntu1) ... 1390s Setting up python3-jupyter-core (5.7.2-5) ... 1390s Setting up liblsan0:amd64 (15.1.0-2ubuntu1) ... 1390s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 1390s Setting up libsz2:amd64 (1.1.3-1) ... 1390s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 1390s Setting up libitm1:amd64 (15.1.0-2ubuntu1) ... 1390s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 1390s Setting up python3-imagesize (1.4.1-1) ... 1390s Setting up libwacom-common (2.14.0-1) ... 1390s Setting up python3-uncertainties (3.2.3-1) ... 1390s Setting up libwayland-client0:amd64 (1.23.1-3) ... 1390s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 1390s Setting up automake (1:1.17-3ubuntu1) ... 1390s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 1390s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... 1390s Setting up libfabric1:amd64 (1.17.0-3.1) ... 1390s Setting up python3-sympy (1.13.3-5) ... 1395s Setting up libice6:amd64 (2:1.1.1-1) ... 1395s Setting up mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 1395s Setting up liblapack3:amd64 (3.12.1-2) ... 1395s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1395s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 1395s Setting up gettext (0.23.1-2) ... 1395s Setting up libgbm1:amd64 (25.0.3-1ubuntu2) ... 1395s Setting up libwacom9:amd64 (2.14.0-1) ... 1395s Setting up pybuild-plugin-pyproject (6.20250414) ... 1395s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 1395s Setting up python3-pytest (8.3.5-1) ... 1395s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 1395s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 1396s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 1396s Setting up python3-nbformat (5.9.1-1) ... 1396s Setting up libhwloc-plugins:amd64 (2.12.0-4) ... 1396s Setting up python3-bs4 (4.13.4-1) ... 1396s Setting up libinput-bin (1.28.1-1) ... 1396s Setting up libtbbbind-2-5:amd64 (2022.0.0-2) ... 1396s Setting up intltool-debian (0.35.0+20060710.6) ... 1396s Setting up libmaeparser1:amd64 (1.3.1-1build1) ... 1396s Setting up libegl-mesa0:amd64 (25.0.3-1ubuntu2) ... 1396s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 1396s Setting up packmol (1:21.0.1-1) ... 1396s Setting up python3-pydantic (2.10.6-1) ... 1396s Setting up libraqm0:amd64 (0.10.2-1) ... 1396s Setting up libpython3.13-dev:amd64 (3.13.3-1) ... 1396s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 1396s Setting up libpmix2t64:amd64 (5.0.7-1) ... 1396s Setting up python3-plotly (5.20.0+dfsg-1) ... 1402s Setting up python3-numpy (1:2.2.4+ds-1) ... 1403s Setting up libjs-sphinxdoc (8.1.3-5) ... 1403s Setting up cpp-14 (14.2.0-19ubuntu2) ... 1403s Setting up dh-strip-nondeterminism (1.14.1-2) ... 1403s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 1403s Setting up python3-lxml:amd64 (5.4.0-1) ... 1403s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 1403s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1403s Setting up xml-core (0.19) ... 1404s Setting up libegl1:amd64 (1.7.0-1build1) ... 1404s Setting up python3-contourpy (1.3.1-1build1) ... 1404s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 1404s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 1404s Setting up python3-spglib (2.6.0-3) ... 1404s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 1404s Setting up libsm6:amd64 (2:1.2.6-1) ... 1404s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 1404s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1404s Setting up libinput10:amd64 (1.28.1-1) ... 1404s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 1404s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 1406s Regenerating fonts cache... done. 1406s Setting up libxft2:amd64 (2.3.6-1build1) ... 1406s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 1406s Setting up python3-scipy (1.14.1-4ubuntu2) ... 1409s Setting up libpython3-dev:amd64 (3.13.3-1) ... 1409s Setting up libglx0:amd64 (1.7.0-1build1) ... 1409s Setting up libproj25:amd64 (9.6.0-1) ... 1409s Setting up python3.13-dev (3.13.3-1) ... 1409s Setting up po-debconf (1.0.21+nmu1) ... 1409s Setting up libtk8.6:amd64 (8.6.16-1) ... 1409s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-9) ... 1409s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 1409s Setting up python3-h5py-serial (3.13.0-1) ... 1409s Setting up libtbb12:amd64 (2022.0.0-2) ... 1409s Setting up python-pymatgen-doc (2025.2.18+dfsg1-4) ... 1409s Setting up libcairo2:amd64 (1.18.4-1) ... 1409s Setting up python3.13-tk (3.13.3-1) ... 1409s Setting up python3-pil:amd64 (11.1.0-5build1) ... 1409s Setting up libgl1:amd64 (1.7.0-1build1) ... 1409s Setting up python3-pandas (2.2.3+dfsg-9) ... 1413s Setting up libamdhip64-5 (5.7.1-5.1) ... 1413s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 1413s Setting up libpython3-all-dev:amd64 (3.13.3-1) ... 1413s Setting up sphinx-common (8.1.3-5) ... 1413s Setting up python3-dev (3.13.3-1) ... 1413s Setting up python3-h5py (3.13.0-1) ... 1413s Setting up python3-cftime (1.6.4-2) ... 1413s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 1413s Setting up cpp (4:14.2.0-1ubuntu1) ... 1413s Setting up python3-monty (2025.3.3-1) ... 1414s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 1414s Setting up python3-netcdf4 (1.7.2-1build4) ... 1414s Setting up python3-all-dev (3.13.3-1) ... 1414s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 1414s Setting up libucx0:amd64 (1.18.1+ds-2) ... 1414s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1414s Setting up blt (2.5.3+dfsg-8) ... 1414s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ... 1414s Setting up python3-tk:amd64 (3.13.3-1) ... 1414s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 1414s Setting up gcc-14 (14.2.0-19ubuntu2) ... 1414s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 1414s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ... 1414s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 1414s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ... 1414s Setting up g++-14 (14.2.0-19ubuntu2) ... 1414s Setting up libopenmpi40:amd64 (5.0.7-1) ... 1414s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ... 1414s Setting up libtool (2.5.4-4) ... 1414s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 1414s Setting up gcc (4:14.2.0-1ubuntu1) ... 1414s Setting up dh-autoreconf (20) ... 1414s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 1414s Setting up g++ (4:14.2.0-1ubuntu1) ... 1414s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 1414s Setting up build-essential (12.12ubuntu1) ... 1414s Setting up openmpi-bin (5.0.7-1) ... 1414s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1414s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 1414s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1414s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-4ubuntu1) ... 1414s Setting up mpi-default-bin (1.18) ... 1414s Setting up debhelper (13.24.1ubuntu2) ... 1414s Setting up python3-mpi4py (4.0.3-3ubuntu1) ... 1414s Setting up python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ... 1414s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S' 1414s patn = re.compile (" \S") 1414s Setting up python3-fonttools (4.55.3-2build1) ... 1415s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 1415s Setting up python3-matplotlib (3.8.3-7build1) ... 1416s Setting up python3-ase (3.24.0-1) ... 1418s Setting up python3-phonopy (2.38.1-1) ... 1418s Setting up python3-pymatgen (2025.2.18+dfsg1-4) ... 1419s Processing triggers for libc-bin (2.41-6ubuntu1) ... 1419s Processing triggers for man-db (2.13.1-1) ... 1421s Processing triggers for udev (257.4-1ubuntu3) ... 1421s Processing triggers for install-info (7.1.1-1) ... 1421s Processing triggers for sgml-base (1.31+nmu1) ... 1421s Setting up docutils-common (0.21.2+dfsg-2) ... 1421s Processing triggers for sgml-base (1.31+nmu1) ... 1421s Setting up python3-docutils (0.21.2+dfsg-2) ... 1422s Setting up python3-sphinx (8.1.3-5) ... 1422s Setting up python3-sphinxcontrib.jquery (4.1-5) ... 1422s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ... 1430s autopkgtest [17:47:26]: test test-pymatgen-net: [----------------------- 1430s running network tests with NET_TEST_LIST=test_get_structure_by_id 1430s ============================= test session starts ============================== 1430s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 1430s cachedir: .pytest_cache 1430s rootdir: /tmp/autopkgtest.OBcu4n/build.7cV/src 1430s configfile: pyproject.toml 1430s plugins: typeguard-4.4.2 1451s collecting ... collected 3117 items / 3116 deselected / 7 skipped / 1 selected 1451s 1452s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED [100%] 1452s 1452s ============================= slowest 30 durations ============================= 1452s 0.48s call tests/ext/test_cod.py::TestCOD::test_get_structure_by_id 1452s 1452s (2 durations < 0.005s hidden. Use -vv to show these durations.) 1452s =========================== short test summary info ============================ 1452s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2 1452s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down 1452s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff' 1452s SKIPPED [1] tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml' 1452s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed 1452s SKIPPED [1] tests/performance/test_import_time.py:32: ref time only comparable in CI runner 1452s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed 1452s ================ 1 passed, 7 skipped, 3116 deselected in 21.62s ================ 1453s autopkgtest [17:47:49]: test test-pymatgen-net: -----------------------] 1454s autopkgtest [17:47:50]: test test-pymatgen-net: - - - - - - - - - - results - - - - - - - - - - 1454s test-pymatgen-net PASS 1454s autopkgtest [17:47:50]: @@@@@@@@@@@@@@@@@@@@ summary 1454s test-pymatgen FAIL non-zero exit status 1 1454s test-pymatgen-net PASS 1472s nova [W] Skipping flock for amd64 1472s Creating nova instance adt-questing-amd64-pymatgen-20250506-172336-juju-7f2275-prod-proposed-migration-environment-23-344783ce-b215-4b54-8836-05a334f5ad09 from image adt/ubuntu-questing-amd64-server-20250506.img (UUID f1864fa2-149c-4e5d-800d-c5107d8a2f35)... 1472s nova [W] Timed out waiting for db19f52a-e636-4acf-8145-a335e9438a31 to get deleted. 1472s nova [W] Skipping flock for amd64 1472s Creating nova instance adt-questing-amd64-pymatgen-20250506-172336-juju-7f2275-prod-proposed-migration-environment-23-344783ce-b215-4b54-8836-05a334f5ad09 from image adt/ubuntu-questing-amd64-server-20250506.img (UUID f1864fa2-149c-4e5d-800d-c5107d8a2f35)... 1472s nova [W] Timed out waiting for 01319086-6e4f-4720-984e-a9587121214e to get deleted.