0s autopkgtest [19:01:09]: starting date and time: 2025-05-03 19:01:09+0000
  0s autopkgtest [19:01:09]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production'
  0s autopkgtest [19:01:09]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xyhcbkhd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade pymatgen --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.10.1+dfsg1-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-1.secgroup --name adt-questing-amd64-pymatgen-20250503-182606-juju-7f2275-prod-proposed-migration-environment-15-2e08e505-609a-4d55-89c9-aec25e8ffc06 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/
 51s autopkgtest [19:02:00]: testbed dpkg architecture: amd64
 51s autopkgtest [19:02:00]: testbed apt version: 3.0.0
 51s autopkgtest [19:02:00]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 51s autopkgtest [19:02:00]: testbed release detected to be: None
 52s autopkgtest [19:02:01]: updating testbed package index (apt update)
 52s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
 53s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
 53s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
 53s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
 53s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [149 kB]
 53s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1442 kB]
 53s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB]
 53s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [203 kB]
 53s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [146 kB]
 53s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [576 kB]
 53s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1424 kB]
 53s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.6 kB]
 53s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB]
 53s Fetched 4155 kB in 1s (3730 kB/s)
 54s Reading package lists...
 55s autopkgtest [19:02:04]: upgrading testbed (apt dist-upgrade and autopurge)
 55s Reading package lists...
 55s Building dependency tree...
 55s Reading state information...
 56s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 56s Starting 2 pkgProblemResolver with broken count: 0
 56s Done
 56s Entering ResolveByKeep
 56s 
 56s Calculating upgrade...
 57s The following packages will be upgraded:
 57s   cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy
 57s   libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient
 57s   sos
 57s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 57s Need to get 2693 kB of archives.
 57s After this operation, 104 kB disk space will be freed.
 57s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB]
 57s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB]
 57s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB]
 57s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB]
 57s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B]
 57s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB]
 57s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B]
 57s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB]
 57s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB]
 57s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB]
 57s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B]
 58s Preconfiguring packages ...
 58s Fetched 2693 kB in 1s (3925 kB/s)
 58s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
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(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 58s Preparing to unpack .../debianutils_5.22_amd64.deb ...
 58s Unpacking debianutils (5.22) over (5.21) ...
 58s Setting up debianutils (5.22) ...
 58s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 58s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ...
 58s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ...
 58s Setting up libsepol2:amd64 (3.8.1-1) ...
 58s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
 58s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ...
 58s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ...
 58s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ...
 59s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ...
 59s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ...
 59s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ...
 59s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ...
 59s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ...
 59s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ...
 59s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ...
 59s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ...
 59s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ...
 59s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ...
 59s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ...
 59s Preparing to unpack .../7-sos_4.9.1-1_all.deb ...
 59s Unpacking sos (4.9.1-1) over (4.9.0-6) ...
 60s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ...
 60s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ...
 60s Setting up sos (4.9.1-1) ...
 60s Setting up libnftnl11:amd64 (1.2.9-1) ...
 60s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ...
 62s Setting up python3-lazr.restfulclient (0.14.6-3) ...
 62s Setting up libmbim-glib4:amd64 (1.32.0-1) ...
 62s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ...
 62s Setting up libmbim-proxy (1.32.0-1) ...
 62s Setting up libqmi-glib5:amd64 (1.36.0-1) ...
 62s Setting up libqmi-proxy (1.36.0-1) ...
 62s Processing triggers for libc-bin (2.41-6ubuntu1) ...
 62s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ...
 62s Processing triggers for man-db (2.13.0-1) ...
 64s Reading package lists...
 65s Building dependency tree...
 65s Reading state information...
 65s Starting pkgProblemResolver with broken count: 0
 65s Starting 2 pkgProblemResolver with broken count: 0
 65s Done
 65s Solving dependencies...
 65s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 66s autopkgtest [19:02:15]: rebooting testbed after setup commands that affected boot
 88s autopkgtest [19:02:37]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr  6 15:05:05 UTC 2025
 91s autopkgtest [19:02:40]: @@@@@@@@@@@@@@@@@@@@ apt-source pymatgen
 94s Get:1 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (dsc) [3207 B]
 94s Get:2 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (tar) [9896 kB]
 94s Get:3 http://ftpmaster.internal/ubuntu questing/universe pymatgen 2025.2.18+dfsg1-4 (diff) [17.1 kB]
 94s gpgv: Signature made Thu Feb 27 10:55:17 2025 UTC
 94s gpgv:                using RSA key 23C9A93E585819E9126D0A36573EF1E4BD5A01FA
 94s gpgv:                issuer "dparsons@debian.org"
 94s gpgv: Can't check signature: No public key
 94s dpkg-source: warning: cannot verify inline signature for ./pymatgen_2025.2.18+dfsg1-4.dsc: no acceptable signature found
 94s autopkgtest [19:02:43]: testing package pymatgen version 2025.2.18+dfsg1-4
 95s autopkgtest [19:02:44]: build not needed
 98s autopkgtest [19:02:47]: test test-pymatgen: preparing testbed
 99s Reading package lists...
 99s Building dependency tree...
 99s Reading state information...
 99s Starting pkgProblemResolver with broken count: 0
 99s Starting 2 pkgProblemResolver with broken count: 0
 99s Done
100s The following NEW packages will be installed:
100s   autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
100s   cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit
100s   dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz
100s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
100s   fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx
100s   fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
100s   gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
100s   libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3
100s   libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0
100s   libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1
100s   libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1
100s   libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev
100s   libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0
100s   libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310
100s   libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins
100s   libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 libinchi1.07
100s   libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
100s   libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc
100s   libjs-underscore libjson-perl libjsoncpp26 liblapack3 liblbfgsb0 liblcms2-2
100s   liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3
100s   libmtdev1t64 libmunge2 libnetcdf22 libogg0 libopenbabel7 libopengl0
100s   libopenjp2-7 libopenmpi40 libpciaccess0 libpcre2-16-0 libpixman-1-0
100s   libpmix2t64 libproj25 libpsm-infinipath1 libpsm2-2 libpython3-all-dev
100s   libpython3-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64
100s   libqt5gui5t64 libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0
100s   librdmacm1t64 libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2
100s   libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1
100s   libtiff6 libtk8.6 libtool libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt
100s   libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0
100s   libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
100s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
100s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
100s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
100s   libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1
100s   libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1
100s   openmpi-bin openmpi-common packmol po-debconf proj-data
100s   pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data
100s   python-pymatgen-doc python3-alabaster python3-all python3-all-dev
100s   python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson
100s   python3-build python3-cftime python3-contourpy python3-cycler
100s   python3-decorator python3-defusedxml python3-dev python3-dnspython
100s   python3-docutils python3-email-validator python3-fastjsonschema
100s   python3-fonttools python3-frozendict python3-fs python3-h5py
100s   python3-h5py-serial python3-imagesize python3-iniconfig python3-installer
100s   python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec
100s   python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py
100s   python3-mpmath python3-nbformat python3-netcdf4 python3-networkx
100s   python3-numpy python3-numpy-dev python3-openbabel python3-palettable
100s   python3-pandas python3-pandas-lib python3-phonopy python3-pil
100s   python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy
100s   python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen
100s   python3-pyproject-hooks python3-pytest python3-pytz python3-roman
100s   python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy
100s   python3-snowballstemmer python3-soupsieve python3-spglib python3-sphinx
100s   python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy
100s   python3-tabulate python3-tenacity python3-tk python3-toml python3-tqdm
100s   python3-traitlets python3-tz python3-ufolib2 python3-uncertainties
100s   python3-unicodedata2 python3-vtk9 python3-wheel python3.13-dev python3.13-tk
100s   sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data
100s   x11-common xml-core zlib1g-dev
100s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded.
100s Need to get 553 MB of archives.
100s After this operation, 2085 MB of additional disk space will be used.
100s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-lato all 2.015-1 [2781 kB]
100s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB]
100s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
100s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB]
100s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
101s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB]
101s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 sgml-base all 1.31 [11.4 kB]
101s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 m4 amd64 1.4.19-7 [263 kB]
101s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 autoconf all 2.72-3ubuntu1 [383 kB]
101s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 autotools-dev all 20220109.1 [44.9 kB]
101s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 automake all 1:1.17-3ubuntu1 [572 kB]
101s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 autopoint all 0.23.1-1 [619 kB]
101s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
101s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
101s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
101s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB]
101s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB]
101s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
101s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
101s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
101s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
101s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
101s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB]
101s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B]
101s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB]
101s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
101s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB]
101s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B]
101s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
101s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
101s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB]
101s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB]
101s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB]
101s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB]
101s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB]
101s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB]
101s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB]
101s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB]
101s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB]
101s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB]
102s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB]
102s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB]
102s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
102s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
102s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB]
102s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB]
102s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB]
102s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
102s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
102s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B]
102s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu2 [2676 kB]
103s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
103s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libtool all 2.5.4-4 [168 kB]
103s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 dh-autoreconf all 20 [16.1 kB]
103s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
103s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
103s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B]
103s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 debugedit amd64 1:5.1-2 [47.0 kB]
103s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 dwz amd64 0.15-1build6 [115 kB]
103s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 gettext amd64 0.23.1-1 [1086 kB]
103s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
103s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
103s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 debhelper all 13.24.1ubuntu2 [895 kB]
103s Get:64 http://ftpmaster.internal/ubuntu questing/universe amd64 dh-python all 6.20250308 [118 kB]
103s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 xml-core all 0.19 [20.3 kB]
103s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB]
103s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB]
103s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
103s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
103s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lyx all 2.4.3-1 [171 kB]
103s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
103s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
103s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB]
103s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB]
104s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB]
104s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB]
104s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB]
104s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.2ubuntu1 [260 kB]
104s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
104s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
104s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
104s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB]
104s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB]
104s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB]
104s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
104s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB]
104s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB]
104s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B]
104s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
104s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
104s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
104s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
104s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
104s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B]
104s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB]
104s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB]
104s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB]
104s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libegl-mesa0 amd64 25.0.3-1ubuntu2 [136 kB]
104s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B]
104s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libexpat1-dev amd64 2.7.1-1 [148 kB]
104s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB]
105s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB]
105s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB]
105s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB]
105s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB]
105s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB]
105s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
105s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
105s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
105s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB]
105s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
105s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
105s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB]
105s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB]
105s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
105s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
105s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
105s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
105s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
105s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB]
105s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
105s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
105s Get:123 http://ftpmaster.internal/ubuntu questing/universe amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [702 kB]
105s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom-common all 2.14.0-1 [103 kB]
105s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB]
105s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB]
105s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB]
105s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libinput10 amd64 1.27.1-1 [155 kB]
105s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
105s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
105s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
105s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
105s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
105s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
105s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB]
105s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 libjson-perl all 4.10000-1 [81.9 kB]
105s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB]
105s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
105s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
106s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
106s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
106s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB]
106s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB]
106s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB]
106s Get:145 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB]
106s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB]
106s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB]
106s Get:148 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB]
106s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB]
106s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB]
106s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB]
106s Get:152 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB]
106s Get:153 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB]
106s Get:154 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB]
106s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB]
106s Get:156 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
106s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB]
106s Get:158 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
106s Get:159 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
106s Get:160 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
106s Get:161 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB]
106s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
106s Get:163 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
106s Get:164 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3.13-dev amd64 3.13.3-1 [5507 kB]
106s Get:165 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-dev amd64 3.13.3-1 [10.8 kB]
106s Get:166 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-all-dev amd64 3.13.3-1 [906 B]
106s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
106s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB]
107s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB]
107s Get:170 http://ftpmaster.internal/ubuntu questing/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB]
107s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB]
107s Get:172 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
107s Get:173 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB]
107s Get:174 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB]
107s Get:175 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB]
107s Get:176 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B]
107s Get:177 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB]
107s Get:178 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B]
107s Get:179 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B]
107s Get:180 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB]
107s Get:181 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB]
107s Get:182 http://ftpmaster.internal/ubuntu questing/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB]
107s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB]
107s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB]
107s Get:185 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB]
107s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 libsymspg2 amd64 2.5.0-2build1 [251 kB]
107s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB]
107s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB]
107s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB]
107s Get:190 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB]
107s Get:191 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB]
107s Get:192 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB]
107s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB]
108s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-4ubuntu1 [182 kB]
108s Get:195 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB]
108s Get:196 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB]
108s Get:197 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB]
108s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB]
108s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB]
108s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 packmol amd64 1:20.15.3-1 [135 kB]
108s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
108s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
108s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB]
108s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-build all 1.2.2-1 [31.0 kB]
108s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
108s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 pybuild-plugin-pyproject all 6.20250308 [1726 B]
108s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 pymatgen-test-files all 2025.2.18-1 [214 MB]
116s Get:208 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python-matplotlib-data all 3.10.1+dfsg1-3 [2936 kB]
116s Get:209 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
116s Get:210 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
116s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 python-pymatgen-doc all 2025.2.18+dfsg1-4 [1186 kB]
116s Get:212 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B]
116s Get:213 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-dev amd64 3.13.3-1 [508 kB]
116s Get:214 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dev amd64 3.13.3-1 [26.7 kB]
116s Get:215 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all-dev amd64 3.13.3-1 [904 B]
116s Get:216 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB]
116s Get:217 http://ftpmaster.internal/ubuntu questing/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
116s Get:218 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB]
117s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-spglib amd64 2.5.0-2build1 [31.5 kB]
117s Get:220 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB]
117s Get:221 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB]
117s Get:222 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-tk amd64 3.13.3-1 [107 kB]
117s Get:223 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tk amd64 3.13.3-1 [9856 B]
117s Get:224 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B]
117s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB]
117s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
117s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB]
117s Get:228 http://ftpmaster.internal/ubuntu questing/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
117s Get:229 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fs all 2.4.16-7 [90.8 kB]
117s Get:230 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lxml amd64 5.3.2-1 [1407 kB]
117s Get:231 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1build1 [27.0 kB]
117s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
117s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sympy all 1.13.3-5 [4229 kB]
117s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
117s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB]
117s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
117s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB]
117s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB]
117s Get:239 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-matplotlib amd64 3.10.1+dfsg1-3 [18.1 MB]
118s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ase all 3.24.0-1 [1787 kB]
118s Get:241 http://ftpmaster.internal/ubuntu questing/main amd64 python3-soupsieve all 2.7-1 [33.5 kB]
118s Get:242 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bs4 all 4.13.3-2 [136 kB]
118s Get:243 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bson all 4.10.1-5build1 [42.9 kB]
118s Get:244 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cftime amd64 1.6.4-2 [233 kB]
118s Get:245 http://ftpmaster.internal/ubuntu questing/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB]
118s Get:246 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB]
118s Get:247 http://ftpmaster.internal/ubuntu questing/main amd64 python3-roman all 5.0-1 [10.3 kB]
118s Get:248 http://ftpmaster.internal/ubuntu questing/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB]
118s Get:249 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB]
118s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB]
118s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-frozendict all 2.4.6-1 [13.2 kB]
118s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB]
118s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py all 3.13.0-1 [7978 B]
118s Get:254 http://ftpmaster.internal/ubuntu questing/main amd64 python3-imagesize all 1.4.1-1 [6844 B]
118s Get:255 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
118s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-joblib all 1.4.2-3 [205 kB]
118s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
118s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB]
118s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB]
118s Get:260 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pytz all 2025.1-3 [162 kB]
118s Get:261 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tz all 2025.1-3 [1866 B]
118s Get:262 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8build1 [5332 kB]
119s Get:263 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB]
119s Get:264 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic-core amd64 2.27.2-1build1 [1622 kB]
119s Get:265 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB]
119s Get:266 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-tqdm all 4.67.1-3 [91.6 kB]
119s Get:267 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1build1 [164 kB]
119s Get:268 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB]
119s Get:269 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-monty all 2025.3.3-1 [40.4 kB]
119s Get:270 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB]
119s Get:271 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-netcdf4 amd64 1.7.2-1build4 [667 kB]
119s Get:272 http://ftpmaster.internal/ubuntu questing/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
120s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB]
120s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB]
120s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-phonopy amd64 2.35.0-1 [325 kB]
120s Get:276 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB]
120s Get:277 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB]
120s Get:278 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
120s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB]
120s Get:280 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB]
120s Get:281 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB]
120s Get:282 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pymatgen amd64 2025.2.18+dfsg1-4 [2663 kB]
120s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest all 8.3.5-1 [252 kB]
120s Get:284 http://ftpmaster.internal/ubuntu questing/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
120s Get:285 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-common all 8.1.3-5 [663 kB]
120s Get:286 http://ftpmaster.internal/ubuntu questing/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB]
120s Get:287 http://ftpmaster.internal/ubuntu questing/main amd64 python3-sphinx all 8.1.3-5 [474 kB]
121s Get:288 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
121s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB]
121s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B]
121s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpi4py amd64 4.0.3-3ubuntu1 [836 kB]
121s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-4ubuntu1 [7839 kB]
122s Fetched 553 MB in 22s (25.5 MB/s)
122s Selecting previously unselected package fonts-lato.
122s (Reading database ... 
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(Reading database ... 80518 files and directories currently installed.)
122s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ...
122s Unpacking fonts-lato (2.015-1) ...
123s Selecting previously unselected package python3-numpy-dev:amd64.
123s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ...
123s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ...
123s Selecting previously unselected package libblas3:amd64.
123s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ...
123s Unpacking libblas3:amd64 (3.12.1-2) ...
123s Selecting previously unselected package libgfortran5:amd64.
123s Preparing to unpack .../003-libgfortran5_15-20250404-0ubuntu1_amd64.deb ...
123s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ...
123s Selecting previously unselected package liblapack3:amd64.
123s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ...
123s Unpacking liblapack3:amd64 (3.12.1-2) ...
123s Selecting previously unselected package python3-numpy.
123s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ...
123s Unpacking python3-numpy (1:2.2.3+ds-5) ...
123s Selecting previously unselected package sgml-base.
123s Preparing to unpack .../006-sgml-base_1.31_all.deb ...
123s Unpacking sgml-base (1.31) ...
123s Selecting previously unselected package m4.
123s Preparing to unpack .../007-m4_1.4.19-7_amd64.deb ...
123s Unpacking m4 (1.4.19-7) ...
123s Selecting previously unselected package autoconf.
123s Preparing to unpack .../008-autoconf_2.72-3ubuntu1_all.deb ...
123s Unpacking autoconf (2.72-3ubuntu1) ...
123s Selecting previously unselected package autotools-dev.
123s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ...
123s Unpacking autotools-dev (20220109.1) ...
123s Selecting previously unselected package automake.
123s Preparing to unpack .../010-automake_1%3a1.17-3ubuntu1_all.deb ...
123s Unpacking automake (1:1.17-3ubuntu1) ...
123s Selecting previously unselected package autopoint.
123s Preparing to unpack .../011-autopoint_0.23.1-1_all.deb ...
123s Unpacking autopoint (0.23.1-1) ...
123s Selecting previously unselected package libtcl8.6:amd64.
123s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
123s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
123s Selecting previously unselected package fonts-dejavu-mono.
123s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ...
123s Unpacking fonts-dejavu-mono (2.37-8) ...
123s Selecting previously unselected package fonts-dejavu-core.
123s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ...
123s Unpacking fonts-dejavu-core (2.37-8) ...
123s Selecting previously unselected package fontconfig-config.
123s Preparing to unpack .../015-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ...
124s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
124s Selecting previously unselected package libfontconfig1:amd64.
124s Preparing to unpack .../016-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ...
124s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
124s Selecting previously unselected package libxrender1:amd64.
124s Preparing to unpack .../017-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
124s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
124s Selecting previously unselected package libxft2:amd64.
124s Preparing to unpack .../018-libxft2_2.3.6-1build1_amd64.deb ...
124s Unpacking libxft2:amd64 (2.3.6-1build1) ...
124s Selecting previously unselected package x11-common.
124s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu4_all.deb ...
124s Unpacking x11-common (1:7.7+23ubuntu4) ...
124s Selecting previously unselected package libxss1:amd64.
124s Preparing to unpack .../020-libxss1_1%3a1.2.3-1build3_amd64.deb ...
124s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
124s Selecting previously unselected package libtk8.6:amd64.
124s Preparing to unpack .../021-libtk8.6_8.6.16-1_amd64.deb ...
124s Unpacking libtk8.6:amd64 (8.6.16-1) ...
124s Selecting previously unselected package tk8.6-blt2.5.
124s Preparing to unpack .../022-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ...
124s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ...
124s Selecting previously unselected package blt.
124s Preparing to unpack .../023-blt_2.5.3+dfsg-8_amd64.deb ...
124s Unpacking blt (2.5.3+dfsg-8) ...
124s Selecting previously unselected package libisl23:amd64.
124s Preparing to unpack .../024-libisl23_0.27-1_amd64.deb ...
124s Unpacking libisl23:amd64 (0.27-1) ...
124s Selecting previously unselected package libmpc3:amd64.
124s Preparing to unpack .../025-libmpc3_1.3.1-1build2_amd64.deb ...
124s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
124s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
124s Preparing to unpack .../026-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
124s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
124s Selecting previously unselected package cpp-14.
124s Preparing to unpack .../027-cpp-14_14.2.0-19ubuntu2_amd64.deb ...
124s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
124s Selecting previously unselected package cpp-x86-64-linux-gnu.
124s Preparing to unpack .../028-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
124s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
124s Selecting previously unselected package cpp.
124s Preparing to unpack .../029-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
124s Unpacking cpp (4:14.2.0-1ubuntu1) ...
124s Selecting previously unselected package libcc1-0:amd64.
124s Preparing to unpack .../030-libcc1-0_15-20250404-0ubuntu1_amd64.deb ...
124s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ...
124s Selecting previously unselected package libgomp1:amd64.
124s Preparing to unpack .../031-libgomp1_15-20250404-0ubuntu1_amd64.deb ...
124s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ...
124s Selecting previously unselected package libitm1:amd64.
124s Preparing to unpack .../032-libitm1_15-20250404-0ubuntu1_amd64.deb ...
124s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ...
124s Selecting previously unselected package libasan8:amd64.
124s Preparing to unpack .../033-libasan8_15-20250404-0ubuntu1_amd64.deb ...
124s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ...
125s Selecting previously unselected package liblsan0:amd64.
125s Preparing to unpack .../034-liblsan0_15-20250404-0ubuntu1_amd64.deb ...
125s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ...
125s Selecting previously unselected package libtsan2:amd64.
125s Preparing to unpack .../035-libtsan2_15-20250404-0ubuntu1_amd64.deb ...
125s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ...
125s Selecting previously unselected package libubsan1:amd64.
125s Preparing to unpack .../036-libubsan1_15-20250404-0ubuntu1_amd64.deb ...
125s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ...
125s Selecting previously unselected package libhwasan0:amd64.
125s Preparing to unpack .../037-libhwasan0_15-20250404-0ubuntu1_amd64.deb ...
125s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ...
125s Selecting previously unselected package libquadmath0:amd64.
125s Preparing to unpack .../038-libquadmath0_15-20250404-0ubuntu1_amd64.deb ...
125s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ...
125s Selecting previously unselected package libgcc-14-dev:amd64.
125s Preparing to unpack .../039-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ...
125s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ...
125s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
125s Preparing to unpack .../040-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
125s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
125s Selecting previously unselected package gcc-14.
125s Preparing to unpack .../041-gcc-14_14.2.0-19ubuntu2_amd64.deb ...
125s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
125s Selecting previously unselected package gcc-x86-64-linux-gnu.
125s Preparing to unpack .../042-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
125s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
125s Selecting previously unselected package gcc.
125s Preparing to unpack .../043-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
125s Unpacking gcc (4:14.2.0-1ubuntu1) ...
125s Selecting previously unselected package libstdc++-14-dev:amd64.
125s Preparing to unpack .../044-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ...
125s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ...
125s Selecting previously unselected package g++-14-x86-64-linux-gnu.
126s Preparing to unpack .../045-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
126s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
126s Selecting previously unselected package g++-14.
126s Preparing to unpack .../046-g++-14_14.2.0-19ubuntu2_amd64.deb ...
126s Unpacking g++-14 (14.2.0-19ubuntu2) ...
126s Selecting previously unselected package g++-x86-64-linux-gnu.
126s Preparing to unpack .../047-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
126s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
126s Selecting previously unselected package g++.
126s Preparing to unpack .../048-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
126s Unpacking g++ (4:14.2.0-1ubuntu1) ...
126s Selecting previously unselected package build-essential.
126s Preparing to unpack .../049-build-essential_12.12ubuntu1_amd64.deb ...
126s Unpacking build-essential (12.12ubuntu1) ...
126s Selecting previously unselected package cython3.
126s Preparing to unpack .../050-cython3_3.0.11+dfsg-2ubuntu2_amd64.deb ...
126s Unpacking cython3 (3.0.11+dfsg-2ubuntu2) ...
126s Selecting previously unselected package libdebhelper-perl.
126s Preparing to unpack .../051-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
126s Unpacking libdebhelper-perl (13.24.1ubuntu2) ...
126s Selecting previously unselected package libtool.
126s Preparing to unpack .../052-libtool_2.5.4-4_all.deb ...
126s Unpacking libtool (2.5.4-4) ...
126s Selecting previously unselected package dh-autoreconf.
126s Preparing to unpack .../053-dh-autoreconf_20_all.deb ...
126s Unpacking dh-autoreconf (20) ...
126s Selecting previously unselected package libarchive-zip-perl.
126s Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ...
126s Unpacking libarchive-zip-perl (1.68-1) ...
126s Selecting previously unselected package libfile-stripnondeterminism-perl.
126s Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
126s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
126s Selecting previously unselected package dh-strip-nondeterminism.
126s Preparing to unpack .../056-dh-strip-nondeterminism_1.14.1-2_all.deb ...
126s Unpacking dh-strip-nondeterminism (1.14.1-2) ...
126s Selecting previously unselected package debugedit.
126s Preparing to unpack .../057-debugedit_1%3a5.1-2_amd64.deb ...
126s Unpacking debugedit (1:5.1-2) ...
126s Selecting previously unselected package dwz.
126s Preparing to unpack .../058-dwz_0.15-1build6_amd64.deb ...
126s Unpacking dwz (0.15-1build6) ...
126s Selecting previously unselected package gettext.
126s Preparing to unpack .../059-gettext_0.23.1-1_amd64.deb ...
126s Unpacking gettext (0.23.1-1) ...
126s Selecting previously unselected package intltool-debian.
126s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ...
126s Unpacking intltool-debian (0.35.0+20060710.6) ...
126s Selecting previously unselected package po-debconf.
126s Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ...
126s Unpacking po-debconf (1.0.21+nmu1) ...
126s Selecting previously unselected package debhelper.
126s Preparing to unpack .../062-debhelper_13.24.1ubuntu2_all.deb ...
126s Unpacking debhelper (13.24.1ubuntu2) ...
126s Selecting previously unselected package dh-python.
126s Preparing to unpack .../063-dh-python_6.20250308_all.deb ...
126s Unpacking dh-python (6.20250308) ...
126s Selecting previously unselected package xml-core.
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127s Selecting previously unselected package fonts-font-awesome.
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127s Selecting previously unselected package fonts-lyx.
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127s Selecting previously unselected package fonts-mathjax.
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127s Selecting previously unselected package libaec0:amd64.
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127s Selecting previously unselected package libllvm17t64:amd64.
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127s Selecting previously unselected package libamd-comgr2:amd64.
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128s Selecting previously unselected package libhsakmt1:amd64.
128s Preparing to unpack .../074-libhsakmt1_5.7.0-1build1_amd64.deb ...
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128s Selecting previously unselected package libhsa-runtime64-1.
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128s Selecting previously unselected package libamdhip64-5.
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128s Selecting previously unselected package libboost-iostreams1.83.0:amd64.
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128s Selecting previously unselected package libpixman-1-0:amd64.
128s Preparing to unpack .../078-libpixman-1-0_0.44.0-3_amd64.deb ...
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128s Selecting previously unselected package libxcb-render0:amd64.
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128s Selecting previously unselected package libxcb-shm0:amd64.
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128s Selecting previously unselected package libcairo2:amd64.
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128s Selecting previously unselected package libdeflate0:amd64.
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128s Selecting previously unselected package libdouble-conversion3:amd64.
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128s Selecting previously unselected package libpciaccess0:amd64.
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128s Selecting previously unselected package libdrm-intel1:amd64.
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128s Selecting previously unselected package libwayland-server0:amd64.
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128s Selecting previously unselected package libx11-xcb1:amd64.
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128s Selecting previously unselected package libxcb-dri3-0:amd64.
128s Preparing to unpack .../088-libxcb-dri3-0_1.17.0-2_amd64.deb ...
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128s Selecting previously unselected package libxcb-present0:amd64.
128s Preparing to unpack .../089-libxcb-present0_1.17.0-2_amd64.deb ...
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128s Selecting previously unselected package libxcb-randr0:amd64.
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128s Selecting previously unselected package libxcb-sync1:amd64.
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128s Selecting previously unselected package libxcb-xfixes0:amd64.
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128s Selecting previously unselected package libxshmfence1:amd64.
128s Preparing to unpack .../093-libxshmfence1_1.3.3-1_amd64.deb ...
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128s Selecting previously unselected package mesa-libgallium:amd64.
128s Preparing to unpack .../094-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ...
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129s Selecting previously unselected package libgbm1:amd64.
129s Preparing to unpack .../095-libgbm1_25.0.3-1ubuntu2_amd64.deb ...
129s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ...
129s Selecting previously unselected package libwayland-client0:amd64.
129s Preparing to unpack .../096-libwayland-client0_1.23.1-3_amd64.deb ...
129s Unpacking libwayland-client0:amd64 (1.23.1-3) ...
129s Selecting previously unselected package libegl-mesa0:amd64.
129s Preparing to unpack .../097-libegl-mesa0_25.0.3-1ubuntu2_amd64.deb ...
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129s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64.
129s Preparing to unpack .../098-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ...
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129s Selecting previously unselected package libexpat1-dev:amd64.
129s Preparing to unpack .../099-libexpat1-dev_2.7.1-1_amd64.deb ...
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129s Selecting previously unselected package libpsm-infinipath1.
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129s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ...
129s Selecting previously unselected package libpsm2-2.
129s Preparing to unpack .../101-libpsm2-2_11.2.185-2.1_amd64.deb ...
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129s Selecting previously unselected package librdmacm1t64:amd64.
129s Preparing to unpack .../102-librdmacm1t64_56.0-4ubuntu1_amd64.deb ...
129s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ...
129s Selecting previously unselected package libfabric1:amd64.
129s Preparing to unpack .../103-libfabric1_1.17.0-3.1_amd64.deb ...
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129s Selecting previously unselected package libvulkan1:amd64.
129s Preparing to unpack .../104-libvulkan1_1.4.304.0-1_amd64.deb ...
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129s Selecting previously unselected package libgl1-mesa-dri:amd64.
129s Preparing to unpack .../105-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ...
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129s Selecting previously unselected package libglvnd0:amd64.
129s Preparing to unpack .../106-libglvnd0_1.7.0-1build1_amd64.deb ...
129s Unpacking libglvnd0:amd64 (1.7.0-1build1) ...
129s Selecting previously unselected package libxcb-glx0:amd64.
129s Preparing to unpack .../107-libxcb-glx0_1.17.0-2_amd64.deb ...
129s Unpacking libxcb-glx0:amd64 (1.17.0-2) ...
129s Selecting previously unselected package libxxf86vm1:amd64.
129s Preparing to unpack .../108-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ...
129s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ...
129s Selecting previously unselected package libglx-mesa0:amd64.
129s Preparing to unpack .../109-libglx-mesa0_25.0.3-1ubuntu2_amd64.deb ...
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129s Selecting previously unselected package libglx0:amd64.
129s Preparing to unpack .../110-libglx0_1.7.0-1build1_amd64.deb ...
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129s Selecting previously unselected package libgl1:amd64.
129s Preparing to unpack .../111-libgl1_1.7.0-1build1_amd64.deb ...
129s Unpacking libgl1:amd64 (1.7.0-1build1) ...
129s Selecting previously unselected package libgl2ps1.4.
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129s Selecting previously unselected package libglew2.2:amd64.
129s Preparing to unpack .../113-libglew2.2_2.2.0-4build1_amd64.deb ...
129s Unpacking libglew2.2:amd64 (2.2.0-4build1) ...
129s Selecting previously unselected package libgraphite2-3:amd64.
129s Preparing to unpack .../114-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
129s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
129s Selecting previously unselected package libharfbuzz0b:amd64.
129s Preparing to unpack .../115-libharfbuzz0b_10.2.0-1_amd64.deb ...
129s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
129s Selecting previously unselected package libsz2:amd64.
129s Preparing to unpack .../116-libsz2_1.1.3-1_amd64.deb ...
129s Unpacking libsz2:amd64 (1.1.3-1) ...
129s Selecting previously unselected package libhdf5-310:amd64.
129s Preparing to unpack .../117-libhdf5-310_1.14.5+repack-3_amd64.deb ...
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129s Selecting previously unselected package libhdf5-hl-310:amd64.
129s Preparing to unpack .../118-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
129s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
129s Selecting previously unselected package libhwloc15:amd64.
129s Preparing to unpack .../119-libhwloc15_2.12.0-1_amd64.deb ...
129s Unpacking libhwloc15:amd64 (2.12.0-1) ...
129s Selecting previously unselected package libice6:amd64.
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130s Selecting previously unselected package libimagequant0:amd64.
130s Preparing to unpack .../121-libimagequant0_2.18.0-1build1_amd64.deb ...
130s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
130s Selecting previously unselected package libinchi1.07.
130s Preparing to unpack .../122-libinchi1.07_1.07.3+dfsg-1_amd64.deb ...
130s Unpacking libinchi1.07 (1.07.3+dfsg-1) ...
130s Selecting previously unselected package libwacom-common.
130s Preparing to unpack .../123-libwacom-common_2.14.0-1_all.deb ...
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130s Selecting previously unselected package libwacom9:amd64.
130s Preparing to unpack .../124-libwacom9_2.14.0-1_amd64.deb ...
130s Unpacking libwacom9:amd64 (2.14.0-1) ...
130s Selecting previously unselected package libinput-bin.
130s Preparing to unpack .../125-libinput-bin_1.27.1-1_amd64.deb ...
130s Unpacking libinput-bin (1.27.1-1) ...
130s Selecting previously unselected package libmtdev1t64:amd64.
130s Preparing to unpack .../126-libmtdev1t64_1.1.7-1_amd64.deb ...
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130s Selecting previously unselected package libinput10:amd64.
130s Preparing to unpack .../127-libinput10_1.27.1-1_amd64.deb ...
130s Unpacking libinput10:amd64 (1.27.1-1) ...
130s Selecting previously unselected package libjpeg-turbo8:amd64.
130s Preparing to unpack .../128-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
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130s Selecting previously unselected package libjpeg8:amd64.
130s Preparing to unpack .../129-libjpeg8_8c-2ubuntu11_amd64.deb ...
130s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
130s Selecting previously unselected package libjs-bootstrap.
130s Preparing to unpack .../130-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
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130s Selecting previously unselected package libjs-jquery.
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130s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
130s Selecting previously unselected package libjs-jquery-ui.
130s Preparing to unpack .../132-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
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130s Selecting previously unselected package libjs-underscore.
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130s Selecting previously unselected package libjs-sphinxdoc.
130s Preparing to unpack .../134-libjs-sphinxdoc_8.1.3-5_all.deb ...
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130s Selecting previously unselected package libjson-perl.
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130s Selecting previously unselected package libjsoncpp26:amd64.
130s Preparing to unpack .../136-libjsoncpp26_1.9.6-3_amd64.deb ...
130s Unpacking libjsoncpp26:amd64 (1.9.6-3) ...
130s Selecting previously unselected package liblbfgsb0:amd64.
130s Preparing to unpack .../137-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
130s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
130s Selecting previously unselected package liblcms2-2:amd64.
130s Preparing to unpack .../138-liblcms2-2_2.16-2_amd64.deb ...
130s Unpacking liblcms2-2:amd64 (2.16-2) ...
130s Selecting previously unselected package liblerc4:amd64.
130s Preparing to unpack .../139-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
130s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
130s Selecting previously unselected package liblzf1:amd64.
130s Preparing to unpack .../140-liblzf1_3.6-4_amd64.deb ...
130s Unpacking liblzf1:amd64 (3.6-4) ...
130s Selecting previously unselected package libmaeparser1:amd64.
130s Preparing to unpack .../141-libmaeparser1_1.3.1-1build1_amd64.deb ...
130s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ...
130s Selecting previously unselected package libmd4c0:amd64.
130s Preparing to unpack .../142-libmd4c0_0.5.2-2_amd64.deb ...
130s Unpacking libmd4c0:amd64 (0.5.2-2) ...
130s Selecting previously unselected package libnetcdf22:amd64.
130s Preparing to unpack .../143-libnetcdf22_1%3a4.9.3-1_amd64.deb ...
130s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ...
130s Selecting previously unselected package libogg0:amd64.
130s Preparing to unpack .../144-libogg0_1.3.5-3build1_amd64.deb ...
130s Unpacking libogg0:amd64 (1.3.5-3build1) ...
130s Selecting previously unselected package libopenbabel7.
130s Preparing to unpack .../145-libopenbabel7_3.1.1+dfsg-11ubuntu3_amd64.deb ...
130s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ...
131s Selecting previously unselected package libmunge2:amd64.
131s Preparing to unpack .../146-libmunge2_0.5.16-1_amd64.deb ...
131s Unpacking libmunge2:amd64 (0.5.16-1) ...
131s Selecting previously unselected package libxnvctrl0:amd64.
131s Preparing to unpack .../147-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ...
131s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ...
131s Selecting previously unselected package ocl-icd-libopencl1:amd64.
131s Preparing to unpack .../148-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ...
131s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
131s Selecting previously unselected package libhwloc-plugins:amd64.
131s Preparing to unpack .../149-libhwloc-plugins_2.12.0-1_amd64.deb ...
131s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ...
131s Selecting previously unselected package libpmix2t64:amd64.
131s Preparing to unpack .../150-libpmix2t64_5.0.6-5_amd64.deb ...
131s Unpacking libpmix2t64:amd64 (5.0.6-5) ...
131s Selecting previously unselected package libibumad3:amd64.
131s Preparing to unpack .../151-libibumad3_56.0-4ubuntu1_amd64.deb ...
131s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ...
131s Selecting previously unselected package libibmad5:amd64.
131s Preparing to unpack .../152-libibmad5_56.0-4ubuntu1_amd64.deb ...
131s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ...
131s Selecting previously unselected package libucx0:amd64.
131s Preparing to unpack .../153-libucx0_1.18.1+ds-2_amd64.deb ...
131s Unpacking libucx0:amd64 (1.18.1+ds-2) ...
131s Selecting previously unselected package libopenmpi40:amd64.
131s Preparing to unpack .../154-libopenmpi40_5.0.7-1_amd64.deb ...
131s Unpacking libopenmpi40:amd64 (5.0.7-1) ...
131s Selecting previously unselected package libpcre2-16-0:amd64.
131s Preparing to unpack .../155-libpcre2-16-0_10.45-1_amd64.deb ...
131s Unpacking libpcre2-16-0:amd64 (10.45-1) ...
131s Selecting previously unselected package proj-data.
131s Preparing to unpack .../156-proj-data_9.5.1-1_all.deb ...
131s Unpacking proj-data (9.5.1-1) ...
131s Selecting previously unselected package libjbig0:amd64.
131s Preparing to unpack .../157-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
131s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
131s Selecting previously unselected package libsharpyuv0:amd64.
131s Preparing to unpack .../158-libsharpyuv0_1.5.0-0.1_amd64.deb ...
131s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
131s Selecting previously unselected package libwebp7:amd64.
131s Preparing to unpack .../159-libwebp7_1.5.0-0.1_amd64.deb ...
131s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
131s Selecting previously unselected package libtiff6:amd64.
131s Preparing to unpack .../160-libtiff6_4.7.0-3ubuntu1_amd64.deb ...
131s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ...
131s Selecting previously unselected package libproj25:amd64.
131s Preparing to unpack .../161-libproj25_9.5.1-1_amd64.deb ...
131s Unpacking libproj25:amd64 (9.5.1-1) ...
131s Selecting previously unselected package zlib1g-dev:amd64.
131s Preparing to unpack .../162-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ...
131s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
131s Selecting previously unselected package libpython3.13-dev:amd64.
131s Preparing to unpack .../163-libpython3.13-dev_3.13.3-1_amd64.deb ...
131s Unpacking libpython3.13-dev:amd64 (3.13.3-1) ...
131s Selecting previously unselected package libpython3-dev:amd64.
131s Preparing to unpack .../164-libpython3-dev_3.13.3-1_amd64.deb ...
131s Unpacking libpython3-dev:amd64 (3.13.3-1) ...
132s Selecting previously unselected package libpython3-all-dev:amd64.
132s Preparing to unpack .../165-libpython3-all-dev_3.13.3-1_amd64.deb ...
132s Unpacking libpython3-all-dev:amd64 (3.13.3-1) ...
132s Selecting previously unselected package libqhull-r8.0:amd64.
132s Preparing to unpack .../166-libqhull-r8.0_2020.2-6build1_amd64.deb ...
132s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ...
132s Selecting previously unselected package libqt5core5t64:amd64.
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132s Selecting previously unselected package libqt5dbus5t64:amd64.
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132s Selecting previously unselected package libegl1:amd64.
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132s Selecting previously unselected package libqt5network5t64:amd64.
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132s Selecting previously unselected package libsm6:amd64.
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132s Selecting previously unselected package libxcb-icccm4:amd64.
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132s Selecting previously unselected package libxcb-util1:amd64.
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132s Selecting previously unselected package libxcb-image0:amd64.
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132s Selecting previously unselected package libxcb-keysyms1:amd64.
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132s Selecting previously unselected package libxcb-render-util0:amd64.
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132s Selecting previously unselected package libxcb-shape0:amd64.
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132s Selecting previously unselected package libxcb-xinerama0:amd64.
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132s Selecting previously unselected package libxcb-xinput0:amd64.
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132s Selecting previously unselected package libxcb-xkb1:amd64.
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132s Selecting previously unselected package libxkbcommon-x11-0:amd64.
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132s Selecting previously unselected package libqt5gui5t64:amd64.
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132s Selecting previously unselected package libqt5widgets5t64:amd64.
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132s Selecting previously unselected package libraqm0:amd64.
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132s Selecting previously unselected package libsymspg2:amd64.
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133s Selecting previously unselected package libtbbbind-2-5:amd64.
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133s Selecting previously unselected package libtbbmalloc2:amd64.
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133s Selecting previously unselected package libtbb12:amd64.
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133s Selecting previously unselected package libtheoradec1:amd64.
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133s Selecting previously unselected package libtheoraenc1:amd64.
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133s Selecting previously unselected package libopengl0:amd64.
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133s Selecting previously unselected package libvtk9.3:amd64.
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133s Selecting previously unselected package libvtk9.3-qt:amd64.
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133s Selecting previously unselected package libwebpdemux2:amd64.
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133s Selecting previously unselected package libwebpmux3:amd64.
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134s Selecting previously unselected package libxslt1.1:amd64.
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134s Selecting previously unselected package openmpi-common.
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134s Unpacking openmpi-common (5.0.7-1) ...
134s Selecting previously unselected package openmpi-bin.
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134s Selecting previously unselected package packmol.
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134s Selecting previously unselected package python3-pyproject-hooks.
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134s Unpacking python3-pyproject-hooks (1.2.0-1) ...
134s Selecting previously unselected package python3-toml.
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134s Unpacking python3-toml (0.10.2-1) ...
134s Selecting previously unselected package python3-wheel.
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134s Selecting previously unselected package python3-build.
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134s Unpacking python3-build (1.2.2-1) ...
134s Selecting previously unselected package python3-installer.
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134s Selecting previously unselected package pybuild-plugin-pyproject.
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134s Unpacking pybuild-plugin-pyproject (6.20250308) ...
134s Selecting previously unselected package pymatgen-test-files.
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136s Selecting previously unselected package python-matplotlib-data.
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136s Selecting previously unselected package libjs-mathjax.
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137s Selecting previously unselected package sphinx-rtd-theme-common.
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137s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
137s Selecting previously unselected package python-pymatgen-doc.
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137s Selecting previously unselected package python3-all.
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137s Unpacking python3-all (3.13.3-1) ...
137s Selecting previously unselected package python3.13-dev.
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137s Selecting previously unselected package python3-dev.
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137s Unpacking python3-dev (3.13.3-1) ...
137s Selecting previously unselected package python3-all-dev.
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137s Selecting previously unselected package python3-annotated-types.
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137s Unpacking python3-annotated-types (0.7.0-1) ...
137s Selecting previously unselected package python3-decorator.
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137s Unpacking python3-decorator (5.1.1-5) ...
137s Selecting previously unselected package python3-scipy.
137s Preparing to unpack .../217-python3-scipy_1.14.1-4ubuntu2_amd64.deb ...
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138s Selecting previously unselected package python3-spglib.
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138s Selecting previously unselected package libopenjp2-7:amd64.
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138s Selecting previously unselected package python3-pil:amd64.
138s Preparing to unpack .../220-python3-pil_11.1.0-5build1_amd64.deb ...
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138s Selecting previously unselected package python3.13-tk.
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138s Selecting previously unselected package python3-tk:amd64.
138s Preparing to unpack .../222-python3-tk_3.13.3-1_amd64.deb ...
138s Unpacking python3-tk:amd64 (3.13.3-1) ...
138s Selecting previously unselected package python3-pil.imagetk:amd64.
138s Preparing to unpack .../223-python3-pil.imagetk_11.1.0-5build1_amd64.deb ...
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138s Selecting previously unselected package python3-contourpy.
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138s Selecting previously unselected package python3-cycler.
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138s Selecting previously unselected package python3-brotli.
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138s Selecting previously unselected package python3-platformdirs.
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138s Selecting previously unselected package python3-fs.
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138s Unpacking python3-fs (2.4.16-7) ...
138s Selecting previously unselected package python3-lxml:amd64.
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138s Unpacking python3-lxml:amd64 (5.3.2-1) ...
138s Selecting previously unselected package python3-lz4.
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138s Selecting previously unselected package python3-mpmath.
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138s Selecting previously unselected package python3-sympy.
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138s Selecting previously unselected package python3-ufolib2.
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138s Selecting previously unselected package python3-unicodedata2.
138s Preparing to unpack .../234-python3-unicodedata2_15.1.0+ds-1build3_amd64.deb ...
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139s Selecting previously unselected package unicode-data.
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139s Selecting previously unselected package python3-fonttools.
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139s Selecting previously unselected package python3-kiwisolver.
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139s Selecting previously unselected package python3-matplotlib.
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139s Selecting previously unselected package python3-ase.
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139s Selecting previously unselected package python3-soupsieve.
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139s Selecting previously unselected package python3-bs4.
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140s Selecting previously unselected package python3-bson.
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140s Selecting previously unselected package python3-cftime.
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140s Selecting previously unselected package python3-defusedxml.
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140s Selecting previously unselected package python3-dnspython.
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140s Selecting previously unselected package python3-roman.
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140s Selecting previously unselected package python3-docutils.
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140s Unpacking python3-docutils (0.21.2+dfsg-2) ...
140s Selecting previously unselected package python3-email-validator.
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140s Selecting previously unselected package python3-fastjsonschema.
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140s Selecting previously unselected package python3-frozendict.
140s Preparing to unpack .../250-python3-frozendict_2.4.6-1_all.deb ...
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140s Selecting previously unselected package python3-h5py-serial.
140s Preparing to unpack .../251-python3-h5py-serial_3.13.0-1_amd64.deb ...
140s Unpacking python3-h5py-serial (3.13.0-1) ...
140s Selecting previously unselected package python3-h5py.
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140s Selecting previously unselected package python3-imagesize.
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140s Selecting previously unselected package python3-iniconfig.
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140s Unpacking python3-iniconfig (1.1.1-2) ...
140s Selecting previously unselected package python3-joblib.
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140s Selecting previously unselected package python3-traitlets.
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140s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ...
140s Selecting previously unselected package python3-jupyter-core.
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140s Selecting previously unselected package python3-latexcodec.
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140s Selecting previously unselected package python3-pytz.
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140s Selecting previously unselected package python3-tz.
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140s Selecting previously unselected package python3-pandas-lib:amd64.
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140s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8build1) ...
141s Selecting previously unselected package python3-pandas.
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141s Unpacking python3-pandas (2.2.3+dfsg-8build1) ...
141s Selecting previously unselected package python3-pydantic-core.
141s Preparing to unpack .../263-python3-pydantic-core_2.27.2-1build1_amd64.deb ...
141s Unpacking python3-pydantic-core (2.27.2-1build1) ...
141s Selecting previously unselected package python3-pydantic.
141s Preparing to unpack .../264-python3-pydantic_2.10.6-1_amd64.deb ...
141s Unpacking python3-pydantic (2.10.6-1) ...
141s Selecting previously unselected package python3-tqdm.
141s Preparing to unpack .../265-python3-tqdm_4.67.1-3_all.deb ...
141s Unpacking python3-tqdm (4.67.1-3) ...
141s Selecting previously unselected package python3-ruamel.yaml.clib.
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141s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ...
141s Selecting previously unselected package python3-ruamel.yaml.
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141s Selecting previously unselected package python3-monty.
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141s Selecting previously unselected package python3-nbformat.
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141s Selecting previously unselected package python3-netcdf4.
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141s Selecting previously unselected package python3-networkx.
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141s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
142s Selecting previously unselected package python3-openbabel.
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144s Setting up dh-python (6.20250308) ...
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148s Setting up python3-platformdirs (4.3.6-1) ...
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148s Setting up libsymspg2:amd64 (2.5.0-2build1) ...
148s Setting up python3-bson (4.10.1-5build1) ...
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179s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ...
179s Setting up python3-tk:amd64 (3.13.3-1) ...
179s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
179s Setting up gcc-14 (14.2.0-19ubuntu2) ...
179s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
179s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ...
179s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
179s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
179s Setting up g++-14 (14.2.0-19ubuntu2) ...
179s Setting up libopenmpi40:amd64 (5.0.7-1) ...
179s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ...
179s Setting up libtool (2.5.4-4) ...
179s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
179s Setting up gcc (4:14.2.0-1ubuntu1) ...
179s Setting up dh-autoreconf (20) ...
179s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ...
179s Setting up g++ (4:14.2.0-1ubuntu1) ...
179s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
179s Setting up build-essential (12.12ubuntu1) ...
179s Setting up openmpi-bin (5.0.7-1) ...
179s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
179s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
179s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
179s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-4ubuntu1) ...
179s Setting up mpi-default-bin (1.18) ...
179s Setting up debhelper (13.24.1ubuntu2) ...
179s Setting up python3-mpi4py (4.0.3-3ubuntu1) ...
179s Setting up python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ...
179s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
179s   patn = re.compile ("  \S")
180s Setting up python3-fonttools (4.55.3-2build1) ...
180s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
180s Setting up python3-matplotlib (3.10.1+dfsg1-3) ...
182s Setting up python3-ase (3.24.0-1) ...
183s Setting up python3-phonopy (2.35.0-1) ...
184s Setting up python3-pymatgen (2025.2.18+dfsg1-4) ...
185s Processing triggers for libc-bin (2.41-6ubuntu1) ...
185s Processing triggers for man-db (2.13.0-1) ...
187s Processing triggers for udev (257.4-1ubuntu3) ...
187s Processing triggers for install-info (7.1.1-1) ...
188s Processing triggers for sgml-base (1.31) ...
188s Setting up docutils-common (0.21.2+dfsg-2) ...
188s Processing triggers for sgml-base (1.31) ...
188s Setting up python3-docutils (0.21.2+dfsg-2) ...
188s Setting up python3-sphinx (8.1.3-5) ...
189s Setting up python3-sphinxcontrib.jquery (4.1-5) ...
189s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
190s autopkgtest [19:04:19]: test test-pymatgen: [-----------------------
191s skipping tests with SKIP_TEST_LIST=TestGenKpt TestHighSymmetryPoint test_from_multi_jobs_file test_from_string test_read_molecule test_read_nbo test_read_negative test_read_plots test_read_write_nbo7 test_all test_custom_smd_write test_sets test_rotor_search_rrs BSDOSPlotterTest test_cdft_dc_parsing test_get_structure_by_id test_CifWriter test_read_write test_init test_get_site_symmetries test_babel_PC_with_RO_depth_0_vs_depth_10 test_fit test_rotor_search_wrs
214s ============================= test session starts ==============================
214s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0
214s rootdir: /tmp/autopkgtest.U7k0BG/build.dCF/src
214s configfile: pyproject.toml
214s plugins: typeguard-4.4.2
214s collected 3117 items / 294 deselected / 7 skipped / 2823 selected
214s 
215s tests/alchemy/test_filters.py .......                                    [  0%]
215s tests/alchemy/test_materials.py .........                                [  0%]
215s tests/alchemy/test_transmuters.py .                                      [  0%]
217s tests/analysis/chemenv/connectivity/test_connected_components.py .....   [  0%]
217s tests/analysis/chemenv/connectivity/test_environment_nodes.py ...        [  0%]
217s tests/analysis/chemenv/connectivity/test_structure_connectivity.py .     [  0%]
217s tests/analysis/chemenv/coordination_environments/test_chemenv_strategies.py . [  0%]
217s .                                                                        [  0%]
217s tests/analysis/chemenv/coordination_environments/test_coordination_geometries.py . [  1%]
217s ..                                                                       [  1%]
218s tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py . [  1%]
223s ..ss                                                                     [  1%]
226s tests/analysis/chemenv/coordination_environments/test_structure_environments.py . [  1%]
226s ..                                                                       [  1%]
226s tests/analysis/chemenv/coordination_environments/test_voronoi.py ..      [  1%]
227s tests/analysis/chemenv/coordination_environments/test_weights.py ....... [  1%]
227s                                                                          [  1%]
227s tests/analysis/chemenv/utils/test_chemenv_config.py .                    [  1%]
227s tests/analysis/chemenv/utils/test_coordination_geometry_utils.py ....... [  1%]
227s .....                                                                    [  2%]
227s tests/analysis/chemenv/utils/test_func_utils.py ...                      [  2%]
227s tests/analysis/chemenv/utils/test_graph_utils.py ....                    [  2%]
227s tests/analysis/chemenv/utils/test_math_utils.py .........                [  2%]
227s tests/analysis/diffraction/test_neutron.py ..                            [  2%]
228s tests/analysis/diffraction/test_tem.py ....................              [  3%]
228s tests/analysis/diffraction/test_xrd.py ..                                [  3%]
276s tests/analysis/elasticity/test_elastic.py .........................      [  4%]
276s tests/analysis/elasticity/test_strain.py ........                        [  4%]
276s tests/analysis/elasticity/test_stress.py .                               [  4%]
284s tests/analysis/ferroelectricity/test_polarization.py ............        [  5%]
286s tests/analysis/interfaces/test_coherent_interface.py ...                 [  5%]
293s tests/analysis/interfaces/test_substrate_analyzer.py ..                  [  5%]
293s tests/analysis/interfaces/test_zsl.py ..                                 [  5%]
300s tests/analysis/magnetism/test_analyzer.py .........ss.                   [  5%]
300s tests/analysis/magnetism/test_heisenberg.py .......                      [  6%]
300s tests/analysis/magnetism/test_jahnteller.py ...                          [  6%]
301s tests/analysis/solar/test_slme.py .                                      [  6%]
303s tests/analysis/structure_prediction/test_dopant_predictor.py ..          [  6%]
303s tests/analysis/structure_prediction/test_substitution_probability.py ... [  6%]
303s                                                                          [  6%]
303s tests/analysis/structure_prediction/test_substitutor.py ..               [  6%]
304s tests/analysis/structure_prediction/test_volume_predictor.py ...         [  6%]
349s tests/analysis/test_adsorption.py ......                                 [  6%]
352s tests/analysis/test_bond_dissociation.py ...                             [  6%]
352s tests/analysis/test_bond_valence.py ....                                 [  7%]
356s tests/analysis/test_chempot_diagram.py ...........                       [  7%]
356s tests/analysis/test_cost.py ....                                         [  7%]
361s tests/analysis/test_dimensionality.py ..........                         [  7%]
361s tests/analysis/test_disorder.py .                                        [  8%]
361s tests/analysis/test_energy_models.py ......                              [  8%]
361s tests/analysis/test_eos.py ......                                        [  8%]
361s tests/analysis/test_ewald.py ...                                         [  8%]
407s tests/analysis/test_fragmenter.py ..........                             [  8%]
407s tests/analysis/test_functional_groups.py ......                          [  9%]
419s tests/analysis/test_graphs.py ..s...........s...................         [ 10%]
419s tests/analysis/test_hhi.py .                                             [ 10%]
419s tests/analysis/test_interface_reactions.py ..................            [ 10%]
435s tests/analysis/test_local_env.py .....................................s. [ 12%]
435s ....                                                                     [ 12%]
436s tests/analysis/test_molecule_matcher.py ................................ [ 13%]
437s ..........................                                               [ 14%]
437s tests/analysis/test_molecule_structure_comparator.py ...s.               [ 14%]
437s tests/analysis/test_nmr.py ......                                        [ 14%]
439s tests/analysis/test_phase_diagram.py ................................... [ 16%]
454s ....................................................                     [ 18%]
454s tests/analysis/test_piezo.py ...                                         [ 18%]
456s tests/analysis/test_piezo_sensitivity.py ..............                  [ 18%]
459s tests/analysis/test_pourbaix_diagram.py ....................             [ 19%]
462s tests/analysis/test_prototypes.py .                                      [ 19%]
462s tests/analysis/test_quasi_harmonic_debye_approx.py .............         [ 19%]
465s tests/analysis/test_quasirrho.py ......                                  [ 20%]
465s tests/analysis/test_reaction_calculator.py .....................         [ 20%]
482s tests/analysis/test_structure_analyzer.py .........                      [ 21%]
483s tests/analysis/test_structure_matcher.py .............................   [ 22%]
491s tests/analysis/test_surface_analysis.py ....sss....s.s.....              [ 22%]
523s tests/analysis/test_transition_state.py ...                              [ 22%]
524s tests/analysis/test_wulff.py .....                                       [ 23%]
524s tests/analysis/test_xps.py .                                             [ 23%]
533s tests/analysis/topological/test_spillage.py .                            [ 23%]
533s tests/analysis/xas/test_spectrum.py ............                         [ 23%]
533s tests/apps/battery/test_analyzer.py ....                                 [ 23%]
533s tests/apps/battery/test_conversion_battery.py ...                        [ 23%]
533s tests/apps/battery/test_insertion_battery.py .........                   [ 24%]
534s tests/apps/battery/test_plotter.py ..                                    [ 24%]
534s tests/apps/borg/test_hive.py .........                                   [ 24%]
534s tests/apps/borg/test_queen.py ..                                         [ 24%]
536s tests/cli/test_pmg_analyze.py .                                          [ 24%]
538s tests/cli/test_pmg_diff.py .                                             [ 24%]
554s tests/cli/test_pmg_plot.py ....                                          [ 24%]
562s tests/cli/test_pmg_structure.py .                                        [ 24%]
562s tests/command_line/test_bader_caller.py ssss                             [ 25%]
562s tests/command_line/test_chargemol_caller.py ..                           [ 25%]
562s tests/command_line/test_critic2_caller.py ss..                           [ 25%]
562s tests/command_line/test_enumlib_caller.py sss                            [ 25%]
562s tests/command_line/test_gulp_caller.py sssssssssssssssssssssssssss       [ 26%]
562s tests/command_line/test_mcsqs_caller.py sssssss                          [ 26%]
562s tests/command_line/test_vampire_caller.py s                              [ 26%]
562s tests/core/test_bonds.py .......                                         [ 26%]
562s tests/core/test_composition.py ......................................... [ 28%]
562s ................                                                         [ 28%]
570s tests/core/test_interface.py ......................                      [ 29%]
570s tests/core/test_ion.py ...............                                   [ 30%]
570s tests/core/test_lattice.py ................................              [ 31%]
570s tests/core/test_libxcfunc.py ..                                          [ 31%]
570s tests/core/test_molecular_orbitals.py ....                               [ 31%]
570s tests/core/test_operations.py ................                           [ 32%]
570s tests/core/test_periodic_table.py ...................................... [ 33%]
571s .....................                                                    [ 34%]
571s tests/core/test_settings.py ..                                           [ 34%]
571s tests/core/test_sites.py ....................                            [ 34%]
571s tests/core/test_spectrum.py .....                                        [ 35%]
573s tests/core/test_structure.py .................s.......s....s............ [ 36%]
582s ...................ss....s.................ssss......................... [ 39%]
583s .....................s.......s.......                                    [ 40%]
659s tests/core/test_surface.py .......................s....                  [ 41%]
665s tests/core/test_tensors.py ............................                  [ 42%]
696s tests/core/test_trajectory.py ..................                         [ 43%]
696s tests/core/test_units.py ................                                [ 43%]
696s tests/core/test_xcfunc.py ....s.                                         [ 43%]
702s tests/electronic_structure/test_bandstructure.py ....................... [ 44%]
710s .........                                                                [ 45%]
710s tests/electronic_structure/test_boltztrap.py ssssssssssssssss            [ 45%]
741s tests/electronic_structure/test_cohp.py ..............................   [ 46%]
741s tests/electronic_structure/test_core.py ..........                       [ 47%]
752s tests/electronic_structure/test_dos.py ..........................        [ 47%]
806s tests/electronic_structure/test_plotter.py ...............ssssssssssssss [ 48%]
806s sssss.....                                                               [ 49%]
810s tests/entries/test_compatibility.py .................................... [ 50%]
811s ...................................................                      [ 52%]
811s tests/entries/test_computed_entries.py ................................. [ 53%]
812s ....                                                                     [ 53%]
814s tests/entries/test_correction_calculator.py ....                         [ 53%]
826s tests/entries/test_entry_tools.py .......                                [ 54%]
826s tests/entries/test_exp_entries.py ...                                    [ 54%]
827s tests/entries/test_mixing_scheme.py ................................     [ 55%]
828s tests/ext/test_cod.py ..                                                 [ 55%]
856s tests/ext/test_optimade.py .....                                         [ 55%]
856s tests/io/abinit/test_abiobjects.py .........                             [ 55%]
856s tests/io/abinit/test_inputs.py ........                                  [ 56%]
856s tests/io/abinit/test_netcdf.py ...                                       [ 56%]
856s tests/io/abinit/test_pseudos.py ......                                   [ 56%]
856s tests/io/aims/sets/test_bs_generator.py ...                              [ 56%]
856s tests/io/aims/sets/test_gw_generator.py .                                [ 56%]
856s tests/io/aims/sets/test_input_set.py .                                   [ 56%]
856s tests/io/aims/sets/test_md_generator.py .                                [ 56%]
856s tests/io/aims/sets/test_relax_generator.py ...                           [ 56%]
856s tests/io/aims/sets/test_static_generator.py ....                         [ 56%]
857s tests/io/aims/sets/test_static_restart_from_relax_generator.py .....     [ 57%]
857s tests/io/aims/test_inputs.py ......                                      [ 57%]
857s tests/io/aims/test_outputs.py ......                                     [ 57%]
857s tests/io/aims/test_parsers.py .......................................... [ 59%]
857s ......................................................                   [ 60%]
857s tests/io/cp2k/test_inputs.py ..............                              [ 61%]
858s tests/io/cp2k/test_outputs.py .......                                    [ 61%]
858s tests/io/exciting/test_inputs.py .s..                                    [ 61%]
858s tests/io/feff/test_inputs.py ..................                          [ 62%]
858s tests/io/feff/test_outputs.py ......                                     [ 62%]
858s tests/io/jdftx/test_generic_tags.py ...............                      [ 63%]
858s tests/io/jdftx/test_input_utils.py ...                                   [ 63%]
858s tests/io/jdftx/test_jdftxinfile.py ..............................        [ 64%]
858s tests/io/jdftx/test_jdftxoutfile.py ..........                           [ 64%]
860s tests/io/jdftx/test_jdftxoutfileslice.py ...................             [ 65%]
860s tests/io/jdftx/test_jelsteps.py ..                                       [ 65%]
860s tests/io/jdftx/test_joutstructure.py ....                                [ 65%]
860s tests/io/jdftx/test_joutstructures.py .                                  [ 65%]
860s tests/io/jdftx/test_output_utils.py ....                                 [ 65%]
860s tests/io/jdftx/test_repr_out.py ........................                 [ 66%]
884s tests/io/lammps/test_data.py .............................               [ 67%]
884s tests/io/lammps/test_generators.py .                                     [ 67%]
885s tests/io/lammps/test_inputs.py .....................                     [ 68%]
885s tests/io/lammps/test_outputs.py ....                                     [ 68%]
886s tests/io/lammps/test_utils.py ...                                        [ 68%]
891s tests/io/lobster/test_inputs.py ................                         [ 69%]
915s tests/io/lobster/test_lobsterenv.py .................                    [ 69%]
930s tests/io/lobster/test_outputs.py ....................................... [ 71%]
934s ............                                                             [ 71%]
934s tests/io/pwmat/test_inputs.py ..........                                 [ 72%]
934s tests/io/qchem/test_inputs.py ...................................        [ 73%]
966s tests/io/qchem/test_outputs.py .....................                     [ 74%]
966s tests/io/qchem/test_utils.py ..                                          [ 74%]
966s tests/io/test_adf.py ..............                                      [ 74%]
966s tests/io/test_ase.py .........................                           [ 75%]
966s tests/io/test_atat.py ....                                               [ 75%]
967s tests/io/test_babel.py ........                                          [ 75%]
969s tests/io/test_cif.py ........s......................................     [ 77%]
979s tests/io/test_common.py ..                                               [ 77%]
979s tests/io/test_core.py .........                                          [ 77%]
979s tests/io/test_cssr.py ..                                                 [ 78%]
979s tests/io/test_fiesta.py ..                                               [ 78%]
979s tests/io/test_gaussian.py .................                              [ 78%]
979s tests/io/test_jarvis.py ss                                               [ 78%]
980s tests/io/test_lmto.py .....                                              [ 78%]
980s tests/io/test_multiwfn.py .....                                          [ 79%]
981s tests/io/test_nwchem.py ............                                     [ 79%]
981s tests/io/test_optimade.py .                                              [ 79%]
997s tests/io/test_packmol.py .........                                       [ 79%]
1029s tests/io/test_phonopy.py ...........                                     [ 80%]
1029s tests/io/test_prismatic.py .                                             [ 80%]
1029s tests/io/test_pwscf.py .............                                     [ 80%]
1029s tests/io/test_res.py ...............                                     [ 81%]
1029s tests/io/test_template_input.py .                                        [ 81%]
1029s tests/io/test_wannier90.py ....                                          [ 81%]
1029s tests/io/test_xcrysden.py ....                                           [ 81%]
1029s tests/io/test_xr.py ..                                                   [ 81%]
1029s tests/io/test_xyz.py ........                                            [ 82%]
1031s tests/io/vasp/test_help.py ...                                           [ 82%]
1032s tests/io/vasp/test_inputs.py ........................................... [ 83%]
1035s .............................s.............                              [ 85%]
1049s tests/io/vasp/test_optics.py ...                                         [ 85%]
1098s tests/io/vasp/test_outputs.py .......................................... [ 86%]
1168s ...................................................................      [ 89%]
1168s tests/io/xtb/test_inputs.py ..                                           [ 89%]
1168s tests/optimization/test_linear_assignment.py ....                        [ 89%]
1168s tests/optimization/test_neighbors.py .                                   [ 89%]
1168s tests/phonon/test_bandstructure.py ...........                           [ 89%]
1169s tests/phonon/test_dos.py ...................                             [ 90%]
1393s tests/phonon/test_gruneisen.py ..............                            [ 90%]
1393s tests/phonon/test_ir_spectra.py .                                        [ 90%]
1401s tests/phonon/test_plotter.py ........                                    [ 91%]
1402s tests/phonon/test_thermal_displacements.py ..............                [ 91%]
1404s tests/symmetry/test_analyzer.py .................................        [ 92%]
1428s tests/symmetry/test_groups.py ........................                   [ 93%]
1449s tests/symmetry/test_kpath_lm.py ...                                      [ 93%]
1458s tests/symmetry/test_kpath_sc.py ..                                       [ 93%]
1459s tests/symmetry/test_kpaths.py .s                                         [ 94%]
1459s tests/symmetry/test_maggroups.py ......                                  [ 94%]
1459s tests/symmetry/test_settings.py ....                                     [ 94%]
1459s tests/symmetry/test_site_symmetries.py .                                 [ 94%]
1459s tests/test_pkg.py s                                                      [ 94%]
1460s tests/transformations/test_advanced_transformations.py .s..sssss..ssssss [ 95%]
1511s ss...ssssss....s                                                         [ 95%]
1511s tests/transformations/test_site_transformations.py ...........s......    [ 96%]
1512s tests/transformations/test_standard_transformations.py .............ssss [ 96%]
1515s ..............                                                           [ 97%]
1515s tests/util/test_coord.py ......................                          [ 98%]
1515s tests/util/test_graph_hashing.py ..                                      [ 98%]
1516s tests/util/test_io.py .                                                  [ 98%]
1516s tests/util/test_misc.py ......                                           [ 98%]
1516s tests/util/test_num.py ....                                              [ 98%]
1516s tests/util/test_plotting.py ..                                           [ 98%]
1516s tests/util/test_provenance.py ........                                   [ 98%]
1516s tests/util/test_string.py ...........                                    [ 99%]
1516s tests/util/test_testing.py ...........                                   [ 99%]
1516s tests/util/test_typing.py .....                                          [ 99%]
1517s tests/vis/test_plotters.py ...                                           [100%]
1517s 
1517s =============================== warnings summary ===============================
1517s tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/chemenv/utils/math_utils.py:333: RuntimeWarning: divide by zero encountered in scalar divide
1517s     return np.where(np.isclose(xx, 0.0), aa * float("inf"), aa * np.power(xx - 1.0, 2) / xx)
1517s 
1517s tests/analysis/chemenv/utils/test_func_utils.py::TestFuncUtils::test_csm_infinite_ratio_function
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/chemenv/utils/math_utils.py:351: RuntimeWarning: divide by zero encountered in scalar divide
1517s     aa * np.power(xx - 1.0, 2) / xx**2.0,
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 96974 warnings
1517s tests/analysis/elasticity/test_strain.py: 4 warnings
1517s tests/analysis/elasticity/test_stress.py: 8 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 16 warnings
1517s tests/analysis/test_piezo.py: 8 warnings
1517s tests/core/test_tensors.py: 468 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:364: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 48487 warnings
1517s tests/analysis/elasticity/test_strain.py: 2 warnings
1517s tests/analysis/elasticity/test_stress.py: 4 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 8 warnings
1517s tests/analysis/test_piezo.py: 4 warnings
1517s tests/core/test_tensors.py: 234 warnings
1517s   /usr/lib/python3/dist-packages/numpy/_core/_methods.py:64: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 5280 warnings
1517s tests/analysis/elasticity/test_strain.py: 105 warnings
1517s tests/analysis/elasticity/test_stress.py: 3 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 360 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 1776 warnings
1517s tests/analysis/test_nmr.py: 15 warnings
1517s tests/core/test_tensors.py: 215 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:287: DeprecationWarning:
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1517s 
1517s tests/analysis/elasticity/test_elastic.py: 14329 warnings
1517s tests/analysis/elasticity/test_strain.py: 363 warnings
1517s tests/analysis/elasticity/test_stress.py: 31 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 1272 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 7104 warnings
1517s tests/analysis/test_nmr.py: 10 warnings
1517s tests/analysis/test_piezo.py: 63 warnings
1517s tests/core/test_tensors.py: 10977 warnings
1517s   /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2447: DeprecationWarning:
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1517s 
1517s tests/analysis/elasticity/test_elastic.py: 1788 warnings
1517s tests/analysis/elasticity/test_strain.py: 36 warnings
1517s tests/analysis/elasticity/test_stress.py: 2 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings
1517s tests/analysis/test_piezo.py: 6 warnings
1517s tests/core/test_tensors.py: 1369 warnings
1517s   /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2448: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 1793 warnings
1517s tests/analysis/elasticity/test_strain.py: 51 warnings
1517s tests/analysis/elasticity/test_stress.py: 5 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings
1517s tests/analysis/test_nmr.py: 2 warnings
1517s tests/analysis/test_piezo.py: 9 warnings
1517s tests/core/test_tensors.py: 1374 warnings
1517s   /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2449: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 1910 warnings
1517s tests/analysis/elasticity/test_strain.py: 108 warnings
1517s tests/analysis/elasticity/test_stress.py: 17 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 159 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 888 warnings
1517s tests/analysis/test_nmr.py: 16 warnings
1517s tests/analysis/test_piezo.py: 18 warnings
1517s tests/core/test_tensors.py: 1629 warnings
1517s   /usr/lib/python3/dist-packages/numpy/_core/_methods.py:73: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 52 warnings
1517s tests/analysis/elasticity/test_strain.py: 40 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 162 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:196: DeprecationWarning:
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1517s 
1517s tests/analysis/elasticity/test_elastic.py: 5 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:92: DeprecationWarning:
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1517s 
1517s tests/analysis/elasticity/test_elastic.py: 5 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings
1517s tests/core/test_tensors.py: 1 warning
1517s   /usr/lib/python3/dist-packages/numpy/_core/_methods.py:52: DeprecationWarning:
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1517s tests/analysis/elasticity/test_elastic.py: 1174 warnings
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1517s 
1517s tests/analysis/elasticity/test_elastic.py::TestElasticTensor::test_from_independent_strains
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/analysis/elasticity/test_elastic.py:228: UserWarning:
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1517s   Extra strain states in strain-stress pairs are neglected in independent strain fitting
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 12 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:482: UserWarning:
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1517s   Tensor is not symmetric, information may be lost in Voigt conversion.
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 30 warnings
1517s tests/analysis/elasticity/test_strain.py: 18 warnings
1517s tests/analysis/elasticity/test_stress.py: 4 warnings
1517s tests/analysis/test_nmr.py: 4 warnings
1517s tests/analysis/test_piezo.py: 3 warnings
1517s tests/core/test_tensors.py: 84 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:760: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 28 warnings
1517s tests/analysis/elasticity/test_strain.py: 4 warnings
1517s tests/analysis/elasticity/test_stress.py: 1 warning
1517s tests/analysis/test_nmr.py: 2 warnings
1517s tests/core/test_tensors.py: 84 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:761: DeprecationWarning:
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1517s 
1517s tests/analysis/elasticity/test_elastic.py: 99 warnings
1517s tests/analysis/elasticity/test_strain.py: 57 warnings
1517s tests/analysis/elasticity/test_stress.py: 12 warnings
1517s tests/analysis/test_nmr.py: 12 warnings
1517s tests/analysis/test_piezo.py: 9 warnings
1517s tests/core/test_tensors.py: 255 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:773: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 58 warnings
1517s tests/analysis/elasticity/test_strain.py: 22 warnings
1517s tests/analysis/elasticity/test_stress.py: 5 warnings
1517s tests/analysis/test_nmr.py: 6 warnings
1517s tests/analysis/test_piezo.py: 3 warnings
1517s tests/core/test_tensors.py: 168 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:815: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 28 warnings
1517s tests/analysis/elasticity/test_strain.py: 4 warnings
1517s tests/analysis/elasticity/test_stress.py: 1 warning
1517s tests/analysis/test_nmr.py: 2 warnings
1517s tests/core/test_tensors.py: 84 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:814: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 58 warnings
1517s tests/analysis/elasticity/test_strain.py: 22 warnings
1517s tests/analysis/elasticity/test_stress.py: 5 warnings
1517s tests/analysis/test_nmr.py: 6 warnings
1517s tests/analysis/test_piezo.py: 3 warnings
1517s tests/core/test_tensors.py: 168 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:818: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 28 warnings
1517s tests/analysis/elasticity/test_strain.py: 4 warnings
1517s tests/analysis/elasticity/test_stress.py: 1 warning
1517s tests/analysis/test_nmr.py: 2 warnings
1517s tests/core/test_tensors.py: 84 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:817: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 56 warnings
1517s tests/analysis/elasticity/test_strain.py: 8 warnings
1517s tests/analysis/elasticity/test_stress.py: 2 warnings
1517s tests/analysis/test_nmr.py: 4 warnings
1517s tests/core/test_tensors.py: 168 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:842: DeprecationWarning:
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1517s 
1517s tests/analysis/elasticity/test_elastic.py: 124 warnings
1517s tests/analysis/elasticity/test_strain.py: 60 warnings
1517s tests/analysis/elasticity/test_stress.py: 13 warnings
1517s tests/analysis/test_nmr.py: 6 warnings
1517s tests/analysis/test_piezo.py: 9 warnings
1517s tests/core/test_tensors.py: 338 warnings
1517s   /usr/lib/python3/dist-packages/numpy/_core/numeric.py:2451: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/elasticity/test_elastic.py: 33 warnings
1517s tests/analysis/elasticity/test_strain.py: 19 warnings
1517s tests/analysis/elasticity/test_stress.py: 4 warnings
1517s tests/analysis/test_nmr.py: 4 warnings
1517s tests/analysis/test_piezo.py: 3 warnings
1517s tests/core/test_tensors.py: 85 warnings
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:851: DeprecationWarning:
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1517s tests/analysis/elasticity/test_elastic.py: 36 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 6912 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 6912 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 6912 warnings
1517s tests/core/test_tensors.py: 1536 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 3456 warnings
1517s tests/core/test_tensors.py: 768 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 6912 warnings
1517s tests/core/test_tensors.py: 1536 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 3474 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 36 warnings
1517s tests/core/test_tensors.py: 8 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 18 warnings
1517s tests/core/test_tensors.py: 4 warnings
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1517s tests/analysis/elasticity/test_elastic.py: 11 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:584: DeprecationWarning:
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1517s tests/analysis/elasticity/test_elastic.py: 28 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/elastic.py:742: DeprecationWarning:
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1517s tests/analysis/elasticity/test_elastic.py: 2 warnings
1517s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings
1517s tests/core/test_tensors.py: 1 warning
1517s   /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:1895: DeprecationWarning:
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1517s tests/analysis/elasticity/test_strain.py::TestDeformation::test_independence
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1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:63: DeprecationWarning:
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1517s tests/analysis/elasticity/test_strain.py: 12 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:253: DeprecationWarning:
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1517s tests/analysis/elasticity/test_stress.py::TestStress::test_properties
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1517s tests/analysis/elasticity/test_stress.py::TestStress::test_properties
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1517s tests/analysis/elasticity/test_stress.py::TestStress::test_properties
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:89: DeprecationWarning:
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1517s tests/analysis/elasticity/test_stress.py::TestStress::test_properties
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/stress.py:101: DeprecationWarning:
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
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1517s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:235: DeprecationWarning:
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1517s tests/analysis/interfaces/test_coherent_interface.py: 81 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 296 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/elasticity/strain.py:237: DeprecationWarning:
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1517s tests/analysis/interfaces/test_coherent_interface.py: 78 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings
1517s tests/core/test_tensors.py: 82 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1021: DeprecationWarning:
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1517s tests/analysis/interfaces/test_coherent_interface.py: 78 warnings
1517s tests/analysis/interfaces/test_substrate_analyzer.py: 592 warnings
1517s tests/core/test_tensors.py: 82 warnings
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1517s tests/analysis/test_graphs.py: 17 warnings
1517s tests/command_line/test_critic2_caller.py: 5 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/command_line/critic2_caller.py:490: DeprecationWarning:
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1517s   Parsing critic2 standard output is deprecated and will not be maintained, please use the native JSON output in the future.
1517s 
1517s tests/analysis/test_interface_reactions.py: 24 warnings
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/analysis/test_interface_reactions.py:368: DeprecationWarning:
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1517s   Arrays of 2-dimensional vectors are deprecated. Use arrays of 3-dimensional vectors instead. (deprecated in NumPy 2.0)
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1517s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations
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1517s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations
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1517s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_notations
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1517s tests/analysis/test_nmr.py::TestChemicalShieldingNotation::test_principal_axis_system
1517s tests/analysis/test_nmr.py::TestElectricFieldGradient::test_principal_axis_system
1517s   /usr/lib/python3/dist-packages/numpy/testing/_private/utils.py:850: DeprecationWarning:
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1517s tests/analysis/test_piezo_sensitivity.py: 120 warnings
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1517s tests/analysis/test_piezo_sensitivity.py: 590 warnings
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1517s tests/analysis/test_piezo_sensitivity.py: 120 warnings
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1517s tests/analysis/test_piezo_sensitivity.py: 60 warnings
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1517s tests/analysis/test_piezo_sensitivity.py: 1040 warnings
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1517s tests/analysis/test_piezo_sensitivity.py: 15930 warnings
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1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 3240 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:571: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 1620 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:581: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 28080 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:578: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 1062 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:437: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 216 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:439: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 108 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:449: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 1872 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:446: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 88 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:126: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 88 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:145: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 84 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:243: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_piezo_sensitivity.py: 98 warnings
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/piezo_sensitivity.py:244: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel
1517s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel
1517s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel
1517s tests/analysis/test_pourbaix_diagram.py::TestPourbaixDiagram::test_multielement_parallel
1517s   /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning:
1517s   
1517s   This process (pid=5102) is multi-threaded, use of fork() may lead to deadlocks in the child.
1517s 
1517s tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/quasirrho.py:243: RuntimeWarning:
1517s   
1517s   overflow encountered in exp
1517s 
1517s tests/analysis/test_quasirrho.py::TestQuasiRRHO::test_extreme_temperature_and_pressure
1517s   /usr/lib/python3/dist-packages/pymatgen/analysis/quasirrho.py:244: RuntimeWarning:
1517s   
1517s   overflow encountered in exp
1517s 
1517s tests/core/test_structure.py::TestStructure::test_rotate_sites
1517s   /usr/lib/python3/dist-packages/pymatgen/core/structure.py:4699: RuntimeWarning:
1517s   
1517s   invalid value encountered in divide
1517s 
1517s tests/core/test_tensors.py: 18 warnings
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/core/test_tensors.py:207: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s tests/core/test_tensors.py::TestTensor::test_convert_to_ieee
1517s   /usr/lib/python3/dist-packages/numpy/_core/_methods.py:44: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestTensor::test_round
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/core/test_tensors.py:376: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestTensor::test_round
1517s   /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:48: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestTensorCollection::test_list_based_functions
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/core/test_tensors.py:409: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestSquareTensor::test_get_scaled
1517s   /usr/lib/python3/dist-packages/pymatgen/core/tensors.py:1003: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestSquareTensor::test_properties
1517s tests/core/test_tensors.py::TestSquareTensor::test_properties
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/core/test_tensors.py:524: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/core/test_tensors.py::TestSquareTensor::test_refine_rotation
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/core/test_tensors.py:556: DeprecationWarning:
1517s   
1517s   __array_wrap__ must accept context and return_scalar arguments (positionally) in the future. (Deprecated NumPy 2.0)
1517s 
1517s tests/electronic_structure/test_bandstructure.py::TestLobsterBandStructureSymmLine::test_proj_bandstructure_plot
1517s   /usr/lib/python3/dist-packages/pymatgen/electronic_structure/plotter.py:1119: RuntimeWarning:
1517s   
1517s   More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
1517s 
1517s tests/electronic_structure/test_dos.py::TestFermiDos::test_doping_fermi
1517s   /usr/lib/python3/dist-packages/pymatgen/electronic_structure/dos.py:527: RuntimeWarning:
1517s   
1517s   divide by zero encountered in divide
1517s 
1517s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries
1517s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries
1517s tests/entries/test_compatibility.py::TestMaterialsProjectCompatibility::test_parallel_process_entries
1517s   /usr/lib/python3/dist-packages/joblib/externals/loky/backend/fork_exec.py:38: DeprecationWarning:
1517s   
1517s   This process (pid=5102) is multi-threaded, use of fork() may lead to deadlocks in the child.
1517s 
1517s tests/io/lammps/test_data.py::TestLammpsData::test_get_str
1517s tests/io/lammps/test_data.py::TestLammpsData::test_write_file
1517s tests/io/lammps/test_data.py::TestLammpsData::test_write_file
1517s tests/io/lammps/test_data.py::TestCombinedData::test_as_lammpsdata
1517s tests/io/lammps/test_data.py::TestCombinedData::test_get_str
1517s   /usr/lib/python3/dist-packages/numpy/_core/fromnumeric.py:57: FutureWarning:
1517s   
1517s   'DataFrame.swapaxes' is deprecated and will be removed in a future version. Please use 'DataFrame.transpose' instead.
1517s 
1517s tests/io/test_cif.py::TestCifIO::test_cif_writer_write_file
1517s   /usr/lib/python3/dist-packages/pymatgen/io/cif.py:1767: FutureWarning:
1517s   
1517s   We strongly discourage using implicit binary/text `mode`, and this would not be allowed after 2025-06-01. I.e. you should pass t/b in `mode`.
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_ionic
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:366: UnconvergedVASPWarning:
1517s   
1517s   /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run.
1517s   Electronic convergence reached: True.
1517s   Ionic convergence reached: False.
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_dfpt_unconverged
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:373: UnconvergedVASPWarning:
1517s   
1517s   /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.unconverged.xml.gz is an unconverged VASP run.
1517s   Electronic convergence reached: False.
1517s   Ionic convergence reached: True.
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:159: UnconvergedVASPWarning:
1517s   
1517s   /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.hse06.xml.gz is an unconverged VASP run.
1517s   Electronic convergence reached: False.
1517s   Ionic convergence reached: True.
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:165: UnconvergedVASPWarning:
1517s   
1517s   /usr/share/doc/pymatgen-test-files/examples/files/io/vasp/outputs/vasprun.dfpt.ionic.xml.gz is an unconverged VASP run.
1517s   Electronic convergence reached: True.
1517s   Ionic convergence reached: False.
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_standard
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:238: RuntimeWarning:
1517s   
1517s   invalid value encountered in divide
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_standard
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:243: RuntimeWarning:
1517s   
1517s   invalid value encountered in divide
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_standard
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:248: RuntimeWarning:
1517s   
1517s   invalid value encountered in divide
1517s 
1517s tests/io/vasp/test_outputs.py::TestVasprun::test_standard
1517s   /tmp/autopkgtest.U7k0BG/build.dCF/src/tests/io/vasp/test_outputs.py:256: RuntimeWarning:
1517s   
1517s   invalid value encountered in divide
1517s 
1517s tests/io/vasp/test_outputs.py::TestWavecar::test_standard
1517s   /usr/lib/python3/dist-packages/pymatgen/io/vasp/outputs.py:5008: RuntimeWarning:
1517s   
1517s   invalid value encountered in cast
1517s 
1517s tests/phonon/test_plotter.py::TestPhononBSPlotter::test_proj_plot
1517s   /usr/lib/python3/dist-packages/pymatgen/phonon/plotter.py:514: RuntimeWarning:
1517s   
1517s   More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.
1517s 
1517s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
1517s ============================= slowest 30 durations =============================
1517s 50.27s call     tests/transformations/test_advanced_transformations.py::TestCubicSupercellTransformation::test_apply_transformation_orthorhombic_supercell
1517s 33.92s call     tests/electronic_structure/test_plotter.py::TestBSPlotterProjected::test_methods
1517s 27.13s call     tests/analysis/test_fragmenter.py::TestFragmentMolecule::test_pc_then_ec_depth_10
1517s 24.78s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_plot
1517s 21.21s call     tests/symmetry/test_kpath_lm.py::TestKPathLatimerMunro::test_kpath_generation
1517s 20.61s call     tests/io/test_phonopy.py::TestGruneisen::test_gruneisen_parameter
1517s 20.31s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_average_gruneisen
1517s 20.05s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_tdos
1517s 19.87s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_multi
1517s 19.64s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_phdos
1517s 19.10s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_acoustic_debye_temp
1517s 18.95s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_debye_temp_phonopy
1517s 18.72s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_as_from_dict
1517s 18.71s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_frequencies
1517s 18.63s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_thermal_conductivity_slack
1517s 18.00s call     tests/phonon/test_gruneisen.py::TestGruneisenParameter::test_gruneisen
1517s 17.54s call     tests/ext/test_optimade.py::TestOptimade::test_update_aliases
1517s 17.21s call     tests/core/test_surface.py::TestSlabGenerator::test_non_stoichiometric_symmetrized_slab
1517s 16.74s call     tests/analysis/elasticity/test_elastic.py::TestElasticTensorExpansion::test_get_yield_stress
1517s 16.31s call     tests/core/test_surface.py::TestSlab::test_symmetrization
1517s 15.68s call     tests/analysis/test_structure_analyzer.py::TestMiscFunction::test_average_coordination_number
1517s 13.75s call     tests/io/vasp/test_optics.py::TestVasprun::test_optics
1517s 11.14s call     tests/io/vasp/test_outputs.py::TestVasprun::test_runtype
1517s 11.12s call     tests/entries/test_entry_tools.py::TestEntrySet::test_ground_states
1517s 10.68s call     tests/analysis/test_transition_state.py::TestNEBAnalysis::test_run
1517s 10.35s call     tests/analysis/test_transition_state.py::TestNEBAnalysis::test_combine_neb_plots
1517s 10.30s call     tests/analysis/test_transition_state.py::TestNEBAnalysis::test_get_plot
1517s 10.05s call     tests/io/test_common.py::TestPMGDir::test_getitem
1517s 9.84s call     tests/io/lobster/test_lobsterenv.py::TestLobsterNeighbors::test_get_info_cohps_to_neighbors
1517s 9.66s call     tests/io/qchem/test_outputs.py::TestQCOutput::test_nbo_hyperbonds
1517s =========================== short test summary info ============================
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2
1517s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down
1517s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
1517s SKIPPED [1] tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml'
1517s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed
1517s SKIPPED [1] tests/performance/test_import_time.py:32: ref time only comparable in CI runner
1517s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed
1517s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:174: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/chemenv/coordination_environments/test_coordination_geometry_finder.py:169: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:264: enumlib not present
1517s SKIPPED [1] tests/analysis/magnetism/test_analyzer.py:300: enumlib not present
1517s SKIPPED [1] tests/analysis/test_graphs.py:351: graphviz executables not present
1517s SKIPPED [1] tests/analysis/test_graphs.py:243: Need someone to fix this, see issue 4206
1517s SKIPPED [1] tests/analysis/test_local_env.py:1367: critic2 executable not present
1517s SKIPPED [1] tests/analysis/test_molecule_structure_comparator.py:144: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/test_surface_analysis.py:263: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/test_surface_analysis.py:270: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/test_surface_analysis.py:278: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/test_surface_analysis.py:256: TODO: need someone to fix this
1517s SKIPPED [1] tests/analysis/test_surface_analysis.py:286: TODO: need someone to fix this
1517s SKIPPED [1] tests/command_line/test_bader_caller.py:119: bader executable not present
1517s SKIPPED [1] tests/command_line/test_bader_caller.py:84: bader executable not present
1517s SKIPPED [1] tests/command_line/test_bader_caller.py:66: bader executable not present
1517s SKIPPED [1] tests/command_line/test_bader_caller.py:136: bader executable not present
1517s SKIPPED [1] tests/command_line/test_critic2_caller.py:26: critic2 executable not present
1517s SKIPPED [1] tests/command_line/test_critic2_caller.py:62: critic2 executable not present
1517s SKIPPED [1] tests/command_line/test_enumlib_caller.py:93: enum_lib not present.
1517s SKIPPED [1] tests/command_line/test_enumlib_caller.py:81: enum_lib not present.
1517s SKIPPED [1] tests/command_line/test_enumlib_caller.py:123: enum_lib not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:41: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:74: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:181: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:148: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:236: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:272: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:114: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:139: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:144: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:135: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:120: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:130: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:126: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:283: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:212: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:320: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:332: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:315: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:356: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:345: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:352: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:363: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:359: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:383: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:373: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:379: gulp not present.
1517s SKIPPED [1] tests/command_line/test_gulp_caller.py:386: gulp not present.
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:67: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:101: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:28: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:51: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:59: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:77: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_mcsqs_caller.py:89: mcsqs executable not present
1517s SKIPPED [1] tests/command_line/test_vampire_caller.py:34: vampire executable not present
1517s SKIPPED [1] tests/core/test_structure.py:714: Only run this in CI tests
1517s SKIPPED [1] tests/core/test_structure.py:107: enumlib or mcsqs executable not present
1517s SKIPPED [1] tests/core/test_structure.py:988: could not import 'moyopy': No module named 'moyopy'
1517s SKIPPED [1] tests/core/test_structure.py:1931: chgnet is not built against NumPy 2.0
1517s SKIPPED [1] tests/core/test_structure.py:2003: TODO: #3958 wait for matgl resolve of torch dependency
1517s SKIPPED [1] tests/core/test_structure.py:1021: PMG_MAPI_KEY environment variable not set or MP API is down. This is also the case in a PR.
1517s SKIPPED [1] tests/core/test_structure.py:1906: chgnet is not built against NumPy 2.0
1517s SKIPPED [1] tests/core/test_structure.py:2015: TODO: #3958 wait for matgl resolve of torch dependency
1517s SKIPPED [1] tests/core/test_structure.py:2026: TODO: #3958 wait for matgl resolve of torch dependency
1517s SKIPPED [1] tests/core/test_structure.py:2035: TODO: #3958 wait for matgl resolve of torch dependency
1517s SKIPPED [1] tests/core/test_structure.py:2668: could not import 'tblite': No module named 'tblite'
1517s SKIPPED [1] tests/core/test_structure.py:2676: Pytorch and TBLite clash. https://github.com/materialsproject/pymatgen/pull/3060
1517s SKIPPED [1] tests/core/test_surface.py:700: This test relies on neighbor orders and is hard coded. Disable temporarily
1517s SKIPPED [1] tests/core/test_xcfunc.py:56: TODO:
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:254: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:221: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:241: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:169: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:199: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:232: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:101: No FDINT
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:123: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:203: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:132: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:116: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:86: No FDINT
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:207: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:141: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:157: No x_trans.
1517s SKIPPED [1] tests/electronic_structure/test_boltztrap.py:43: No x_trans.
1517s SKIPPED [19] tests/electronic_structure/test_plotter.py: No x_trans executable found
1517s SKIPPED [1] tests/io/exciting/test_inputs.py:137: inconsistent data
1517s SKIPPED [1] tests/io/test_cif.py:322: non-free PF*.cif test files are not available
1517s SKIPPED [1] tests/io/test_jarvis.py:12: JARVIS-tools not loaded.
1517s SKIPPED [1] tests/io/test_jarvis.py:20: JARVIS-tools not loaded.
1517s SKIPPED [1] tests/io/vasp/test_inputs.py:1717: TODO: need someone to fix this
1517s SKIPPED [1] tests/symmetry/test_kpaths.py:21: No seek path present.
1517s SKIPPED [1] tests/test_pkg.py:11: SRC_TXT_PATH='src/pymatgen.egg-info/SOURCES.txt' not found. Run `pip install .` to create
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:97: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:158: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:188: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:207: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:237: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:249: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:364: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:304: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:342: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:334: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:352: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:492: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:540: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:549: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:607: mcsqs not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:617: mcsqs not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:638: mcsqs not present.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:670: icet not installed.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:656: icet not installed.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:681: icet not installed.
1517s SKIPPED [1] tests/transformations/test_advanced_transformations.py:874: hiphive not present
1517s SKIPPED [1] tests/transformations/test_site_transformations.py:214: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_standard_transformations.py:238: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_standard_transformations.py:255: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_standard_transformations.py:273: enum_lib not present.
1517s SKIPPED [1] tests/transformations/test_standard_transformations.py:279: enum_lib not present.
1517s = 2684 passed, 146 skipped, 294 deselected, 308478 warnings in 1326.06s (0:22:06) =
1517s ..tot conformations = 3
1517s ..tot confs tested = 3
1517s ..below energy threshold = 3
1522s autopkgtest [19:26:31]: test test-pymatgen: -----------------------]
1523s test-pymatgen        PASS
1523s autopkgtest [19:26:32]: test test-pymatgen:  - - - - - - - - - - results - - - - - - - - - -
1523s autopkgtest [19:26:32]: test test-pymatgen-net: preparing testbed
1596s autopkgtest [19:27:45]: testbed dpkg architecture: amd64
1596s autopkgtest [19:27:45]: testbed apt version: 3.0.0
1597s autopkgtest [19:27:46]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1597s autopkgtest [19:27:46]: testbed release detected to be: questing
1598s autopkgtest [19:27:47]: updating testbed package index (apt update)
1598s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB]
1598s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease
1598s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease
1598s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease
1598s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [149 kB]
1598s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB]
1598s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1442 kB]
1599s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [203 kB]
1599s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [146 kB]
1599s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [576 kB]
1599s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1424 kB]
1599s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.6 kB]
1599s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB]
1599s Fetched 4155 kB in 1s (3924 kB/s)
1600s Reading package lists...
1600s autopkgtest [19:27:49]: upgrading testbed (apt dist-upgrade and autopurge)
1601s Reading package lists...
1601s Building dependency tree...
1601s Reading state information...
1601s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
1601s Starting 2 pkgProblemResolver with broken count: 0
1601s Done
1602s Entering ResolveByKeep
1602s 
1602s Calculating upgrade...
1602s The following packages will be upgraded:
1602s   cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy
1602s   libnftnl11 libqmi-glib5 libqmi-proxy libsepol2 python3-lazr.restfulclient
1602s   sos
1602s 11 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1602s Need to get 2693 kB of archives.
1602s After this operation, 104 kB disk space will be freed.
1602s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB]
1603s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB]
1603s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB]
1603s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB]
1603s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B]
1603s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB]
1603s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B]
1603s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB]
1603s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB]
1603s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB]
1603s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B]
1603s Preconfiguring packages ...
1603s Fetched 2693 kB in 1s (4363 kB/s)
1604s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
1604s Preparing to unpack .../debianutils_5.22_amd64.deb ...
1604s Unpacking debianutils (5.22) over (5.21) ...
1604s Setting up debianutils (5.22) ...
1604s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
1604s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ...
1604s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ...
1604s Setting up libsepol2:amd64 (3.8.1-1) ...
1604s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80514 files and directories currently installed.)
1604s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ...
1604s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ...
1604s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ...
1604s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ...
1604s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ...
1604s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ...
1604s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ...
1604s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ...
1604s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ...
1604s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ...
1605s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ...
1605s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ...
1605s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ...
1605s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ...
1605s Preparing to unpack .../7-sos_4.9.1-1_all.deb ...
1605s Unpacking sos (4.9.1-1) over (4.9.0-6) ...
1605s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ...
1605s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ...
1605s Setting up sos (4.9.1-1) ...
1606s Setting up libnftnl11:amd64 (1.2.9-1) ...
1606s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ...
1607s Setting up python3-lazr.restfulclient (0.14.6-3) ...
1607s Setting up libmbim-glib4:amd64 (1.32.0-1) ...
1607s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ...
1607s Setting up libmbim-proxy (1.32.0-1) ...
1607s Setting up libqmi-glib5:amd64 (1.36.0-1) ...
1607s Setting up libqmi-proxy (1.36.0-1) ...
1607s Processing triggers for libc-bin (2.41-6ubuntu1) ...
1607s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ...
1608s Processing triggers for man-db (2.13.0-1) ...
1609s Reading package lists...
1610s Building dependency tree...
1610s Reading state information...
1610s Starting pkgProblemResolver with broken count: 0
1610s Starting 2 pkgProblemResolver with broken count: 0
1610s Done
1610s Solving dependencies...
1610s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1611s autopkgtest [19:28:00]: rebooting testbed after setup commands that affected boot
1624s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
1633s Reading package lists...
1633s Building dependency tree...
1633s Reading state information...
1634s Starting pkgProblemResolver with broken count: 0
1634s Starting 2 pkgProblemResolver with broken count: 0
1634s Done
1634s The following NEW packages will be installed:
1634s   autoconf automake autopoint autotools-dev blt build-essential cpp cpp-14
1634s   cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cython3 debhelper debugedit
1634s   dh-autoreconf dh-python dh-strip-nondeterminism docutils-common dwz
1634s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
1634s   fonts-font-awesome fonts-glyphicons-halflings fonts-lato fonts-lyx
1634s   fonts-mathjax g++ g++-14 g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gcc
1634s   gcc-14 gcc-14-x86-64-linux-gnu gcc-x86-64-linux-gnu gettext intltool-debian
1634s   libaec0 libamd-comgr2 libamdhip64-5 libarchive-zip-perl libasan8 libblas3
1634s   libboost-iostreams1.83.0 libcairo2 libcc1-0 libdebhelper-perl libdeflate0
1634s   libdouble-conversion3 libdrm-intel1 libegl-mesa0 libegl1
1634s   libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1
1634s   libfile-stripnondeterminism-perl libfontconfig1 libgbm1 libgcc-14-dev
1634s   libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 libglew2.2 libglvnd0
1634s   libglx-mesa0 libglx0 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310
1634s   libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-plugins
1634s   libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 libinchi1.07
1634s   libinput-bin libinput10 libisl23 libitm1 libjbig0 libjpeg-turbo8 libjpeg8
1634s   libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-mathjax libjs-sphinxdoc
1634s   libjs-underscore libjson-perl libjsoncpp26 liblapack3 liblbfgsb0 liblcms2-2
1634s   liblerc4 libllvm17t64 liblsan0 liblzf1 libmaeparser1 libmd4c0 libmpc3
1634s   libmtdev1t64 libmunge2 libnetcdf22 libogg0 libopenbabel7 libopengl0
1634s   libopenjp2-7 libopenmpi40 libpciaccess0 libpcre2-16-0 libpixman-1-0
1634s   libpmix2t64 libproj25 libpsm-infinipath1 libpsm2-2 libpython3-all-dev
1634s   libpython3-dev libpython3.13-dev libqhull-r8.0 libqt5core5t64 libqt5dbus5t64
1634s   libqt5gui5t64 libqt5network5t64 libqt5widgets5t64 libquadmath0 libraqm0
1634s   librdmacm1t64 libsharpyuv0 libsm6 libstdc++-14-dev libsymspg2 libsz2
1634s   libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheoradec1 libtheoraenc1
1634s   libtiff6 libtk8.6 libtool libtsan2 libubsan1 libucx0 libvtk9.3 libvtk9.3-qt
1634s   libvulkan1 libwacom-common libwacom9 libwayland-client0 libwayland-server0
1634s   libwebp7 libwebpdemux2 libwebpmux3 libx11-xcb1 libxcb-dri3-0 libxcb-glx0
1634s   libxcb-icccm4 libxcb-image0 libxcb-keysyms1 libxcb-present0 libxcb-randr0
1634s   libxcb-render-util0 libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1
1634s   libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1
1634s   libxft2 libxkbcommon-x11-0 libxnvctrl0 libxrender1 libxshmfence1 libxslt1.1
1634s   libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin ocl-icd-libopencl1
1634s   openmpi-bin openmpi-common packmol po-debconf proj-data
1634s   pybuild-plugin-pyproject pymatgen-test-files python-matplotlib-data
1634s   python-pymatgen-doc python3-alabaster python3-all python3-all-dev
1634s   python3-annotated-types python3-ase python3-brotli python3-bs4 python3-bson
1634s   python3-build python3-cftime python3-contourpy python3-cycler
1634s   python3-decorator python3-defusedxml python3-dev python3-dnspython
1634s   python3-docutils python3-email-validator python3-fastjsonschema
1634s   python3-fonttools python3-frozendict python3-fs python3-h5py
1634s   python3-h5py-serial python3-imagesize python3-iniconfig python3-installer
1634s   python3-joblib python3-jupyter-core python3-kiwisolver python3-latexcodec
1634s   python3-lxml python3-lz4 python3-matplotlib python3-monty python3-mpi4py
1634s   python3-mpmath python3-nbformat python3-netcdf4 python3-networkx
1634s   python3-numpy python3-numpy-dev python3-openbabel python3-palettable
1634s   python3-pandas python3-pandas-lib python3-phonopy python3-pil
1634s   python3-pil.imagetk python3-platformdirs python3-plotly python3-pluggy
1634s   python3-pybtex python3-pydantic python3-pydantic-core python3-pymatgen
1634s   python3-pyproject-hooks python3-pytest python3-pytz python3-roman
1634s   python3-ruamel.yaml python3-ruamel.yaml.clib python3-scipy
1634s   python3-snowballstemmer python3-soupsieve python3-spglib python3-sphinx
1634s   python3-sphinx-rtd-theme python3-sphinxcontrib.jquery python3-sympy
1634s   python3-tabulate python3-tenacity python3-tk python3-toml python3-tqdm
1634s   python3-traitlets python3-tz python3-ufolib2 python3-uncertainties
1634s   python3-unicodedata2 python3-vtk9 python3-wheel python3.13-dev python3.13-tk
1634s   sgml-base sphinx-common sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data
1634s   x11-common xml-core zlib1g-dev
1634s 0 upgraded, 292 newly installed, 0 to remove and 0 not upgraded.
1634s Need to get 553 MB of archives.
1634s After this operation, 2085 MB of additional disk space will be used.
1634s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-lato all 2.015-1 [2781 kB]
1636s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB]
1636s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB]
1636s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB]
1636s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB]
1637s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB]
1638s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 sgml-base all 1.31 [11.4 kB]
1638s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 m4 amd64 1.4.19-7 [263 kB]
1638s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 autoconf all 2.72-3ubuntu1 [383 kB]
1638s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 autotools-dev all 20220109.1 [44.9 kB]
1638s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 automake all 1:1.17-3ubuntu1 [572 kB]
1638s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 autopoint all 0.23.1-1 [619 kB]
1638s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB]
1638s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB]
1638s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB]
1638s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB]
1638s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB]
1638s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB]
1638s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB]
1638s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB]
1638s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B]
1638s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB]
1638s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB]
1638s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B]
1638s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB]
1638s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB]
1638s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB]
1639s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B]
1639s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [5586 B]
1639s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 cpp amd64 4:14.2.0-1ubuntu1 [22.4 kB]
1639s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB]
1639s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB]
1639s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB]
1639s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB]
1639s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB]
1639s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB]
1639s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB]
1639s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB]
1639s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB]
1639s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB]
1639s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB]
1640s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB]
1640s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [1208 B]
1640s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 gcc amd64 4:14.2.0-1ubuntu1 [5004 B]
1640s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB]
1640s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [13.4 MB]
1640s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 g++-14 amd64 14.2.0-19ubuntu2 [23.0 kB]
1640s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 g++-x86-64-linux-gnu amd64 4:14.2.0-1ubuntu1 [968 B]
1640s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 g++ amd64 4:14.2.0-1ubuntu1 [1100 B]
1640s Get:50 http://ftpmaster.internal/ubuntu questing/main amd64 build-essential amd64 12.12ubuntu1 [5080 B]
1640s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 cython3 amd64 3.0.11+dfsg-2ubuntu2 [2676 kB]
1640s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 libdebhelper-perl all 13.24.1ubuntu2 [95.4 kB]
1640s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libtool all 2.5.4-4 [168 kB]
1640s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 dh-autoreconf all 20 [16.1 kB]
1640s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libarchive-zip-perl all 1.68-1 [90.2 kB]
1640s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [20.3 kB]
1640s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 dh-strip-nondeterminism all 1.14.1-2 [5064 B]
1640s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 debugedit amd64 1:5.1-2 [47.0 kB]
1640s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 dwz amd64 0.15-1build6 [115 kB]
1640s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 gettext amd64 0.23.1-1 [1086 kB]
1640s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 intltool-debian all 0.35.0+20060710.6 [23.2 kB]
1640s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 po-debconf all 1.0.21+nmu1 [233 kB]
1640s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 debhelper all 13.24.1ubuntu2 [895 kB]
1640s Get:64 http://ftpmaster.internal/ubuntu questing/universe amd64 dh-python all 6.20250308 [118 kB]
1640s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 xml-core all 0.19 [20.3 kB]
1640s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 docutils-common all 0.21.2+dfsg-2 [131 kB]
1640s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB]
1640s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
1640s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
1640s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lyx all 2.4.3-1 [171 kB]
1641s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
1641s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB]
1641s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB]
1642s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB]
1642s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB]
1642s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB]
1642s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB]
1642s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-iostreams1.83.0 amd64 1.83.0-4.2ubuntu1 [260 kB]
1642s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB]
1642s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB]
1642s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B]
1642s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB]
1643s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB]
1643s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB]
1643s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB]
1643s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB]
1643s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB]
1643s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B]
1643s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B]
1643s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B]
1643s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB]
1643s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B]
1643s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB]
1643s Get:94 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B]
1643s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB]
1643s Get:96 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB]
1643s Get:97 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB]
1643s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libegl-mesa0 amd64 25.0.3-1ubuntu2 [136 kB]
1643s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B]
1643s Get:100 http://ftpmaster.internal/ubuntu questing/main amd64 libexpat1-dev amd64 2.7.1-1 [148 kB]
1643s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB]
1643s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB]
1643s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB]
1643s Get:104 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB]
1644s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB]
1644s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB]
1644s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB]
1644s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB]
1644s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B]
1644s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB]
1644s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB]
1644s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB]
1644s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB]
1644s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB]
1644s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB]
1644s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB]
1644s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B]
1644s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB]
1644s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB]
1644s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB]
1644s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB]
1644s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB]
1644s Get:123 http://ftpmaster.internal/ubuntu questing/universe amd64 libinchi1.07 amd64 1.07.3+dfsg-1 [702 kB]
1644s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom-common all 2.14.0-1 [103 kB]
1644s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB]
1644s Get:126 http://ftpmaster.internal/ubuntu questing/main amd64 libinput-bin amd64 1.27.1-1 [23.4 kB]
1644s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB]
1644s Get:128 http://ftpmaster.internal/ubuntu questing/main amd64 libinput10 amd64 1.27.1-1 [155 kB]
1644s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB]
1644s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B]
1644s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
1644s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
1644s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
1644s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB]
1644s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB]
1644s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 libjson-perl all 4.10000-1 [81.9 kB]
1644s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB]
1644s Get:138 http://ftpmaster.internal/ubuntu questing/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB]
1644s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB]
1644s Get:140 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB]
1644s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 liblzf1 amd64 3.6-4 [7624 B]
1644s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 libmaeparser1 amd64 1.3.1-1build1 [90.2 kB]
1644s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB]
1644s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB]
1644s Get:145 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB]
1644s Get:146 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenbabel7 amd64 3.1.1+dfsg-11ubuntu3 [3501 kB]
1644s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB]
1644s Get:148 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB]
1644s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB]
1644s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB]
1644s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB]
1644s Get:152 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB]
1644s Get:153 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB]
1644s Get:154 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB]
1644s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB]
1644s Get:156 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB]
1644s Get:157 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB]
1645s Get:158 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB]
1645s Get:159 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB]
1645s Get:160 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB]
1645s Get:161 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB]
1645s Get:162 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB]
1645s Get:163 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB]
1645s Get:164 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3.13-dev amd64 3.13.3-1 [5507 kB]
1645s Get:165 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-dev amd64 3.13.3-1 [10.8 kB]
1645s Get:166 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-all-dev amd64 3.13.3-1 [906 B]
1645s Get:167 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB]
1645s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB]
1645s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB]
1645s Get:170 http://ftpmaster.internal/ubuntu questing/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB]
1645s Get:171 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB]
1645s Get:172 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.4-1 [17.4 kB]
1645s Get:173 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB]
1645s Get:174 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB]
1645s Get:175 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB]
1645s Get:176 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B]
1645s Get:177 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB]
1645s Get:178 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B]
1645s Get:179 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B]
1645s Get:180 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB]
1645s Get:181 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB]
1645s Get:182 http://ftpmaster.internal/ubuntu questing/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB]
1645s Get:183 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB]
1645s Get:184 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB]
1645s Get:185 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB]
1645s Get:186 http://ftpmaster.internal/ubuntu questing/universe amd64 libsymspg2 amd64 2.5.0-2build1 [251 kB]
1645s Get:187 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB]
1645s Get:188 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB]
1645s Get:189 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB]
1645s Get:190 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB]
1645s Get:191 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB]
1645s Get:192 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB]
1645s Get:193 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB]
1646s Get:194 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3-qt amd64 9.3.0+dfsg1-4ubuntu1 [182 kB]
1646s Get:195 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB]
1646s Get:196 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB]
1646s Get:197 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB]
1646s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB]
1646s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB]
1646s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 packmol amd64 1:20.15.3-1 [135 kB]
1646s Get:201 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyproject-hooks all 1.2.0-1 [10.2 kB]
1646s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-toml all 0.10.2-1 [16.5 kB]
1646s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-wheel all 0.45.1-1 [57.7 kB]
1647s Get:204 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-build all 1.2.2-1 [31.0 kB]
1647s Get:205 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-installer all 0.7.0+dfsg1-3 [17.4 kB]
1647s Get:206 http://ftpmaster.internal/ubuntu questing/universe amd64 pybuild-plugin-pyproject all 6.20250308 [1726 B]
1647s Get:207 http://ftpmaster.internal/ubuntu questing/universe amd64 pymatgen-test-files all 2025.2.18-1 [214 MB]
1655s Get:208 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python-matplotlib-data all 3.10.1+dfsg1-3 [2936 kB]
1655s Get:209 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
1656s Get:210 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB]
1656s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 python-pymatgen-doc all 2025.2.18+dfsg1-4 [1186 kB]
1656s Get:212 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B]
1656s Get:213 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-dev amd64 3.13.3-1 [508 kB]
1656s Get:214 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dev amd64 3.13.3-1 [26.7 kB]
1656s Get:215 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all-dev amd64 3.13.3-1 [904 B]
1656s Get:216 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-annotated-types all 0.7.0-1 [19.4 kB]
1656s Get:217 http://ftpmaster.internal/ubuntu questing/main amd64 python3-decorator all 5.1.1-5 [10.1 kB]
1656s Get:218 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB]
1656s Get:219 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-spglib amd64 2.5.0-2build1 [31.5 kB]
1656s Get:220 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB]
1656s Get:221 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB]
1656s Get:222 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-tk amd64 3.13.3-1 [107 kB]
1656s Get:223 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tk amd64 3.13.3-1 [9856 B]
1656s Get:224 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B]
1656s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB]
1656s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cycler all 0.12.1-1 [9716 B]
1656s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB]
1656s Get:228 http://ftpmaster.internal/ubuntu questing/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB]
1657s Get:229 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fs all 2.4.16-7 [90.8 kB]
1657s Get:230 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lxml amd64 5.3.2-1 [1407 kB]
1657s Get:231 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1build1 [27.0 kB]
1657s Get:232 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpmath all 1.3.0-1 [425 kB]
1657s Get:233 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sympy all 1.13.3-5 [4229 kB]
1657s Get:234 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB]
1657s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB]
1657s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 unicode-data all 15.1.0-1 [8878 kB]
1657s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB]
1657s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB]
1657s Get:239 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-matplotlib amd64 3.10.1+dfsg1-3 [18.1 MB]
1658s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ase all 3.24.0-1 [1787 kB]
1658s Get:241 http://ftpmaster.internal/ubuntu questing/main amd64 python3-soupsieve all 2.7-1 [33.5 kB]
1658s Get:242 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bs4 all 4.13.3-2 [136 kB]
1658s Get:243 http://ftpmaster.internal/ubuntu questing/main amd64 python3-bson all 4.10.1-5build1 [42.9 kB]
1658s Get:244 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cftime amd64 1.6.4-2 [233 kB]
1658s Get:245 http://ftpmaster.internal/ubuntu questing/main amd64 python3-defusedxml all 0.7.1-3 [42.2 kB]
1658s Get:246 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dnspython all 2.7.0-1ubuntu1 [167 kB]
1658s Get:247 http://ftpmaster.internal/ubuntu questing/main amd64 python3-roman all 5.0-1 [10.3 kB]
1658s Get:248 http://ftpmaster.internal/ubuntu questing/main amd64 python3-docutils all 0.21.2+dfsg-2 [409 kB]
1658s Get:249 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-email-validator all 2.2.0-1 [28.5 kB]
1658s Get:250 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB]
1658s Get:251 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-frozendict all 2.4.6-1 [13.2 kB]
1658s Get:252 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB]
1658s Get:253 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py all 3.13.0-1 [7978 B]
1658s Get:254 http://ftpmaster.internal/ubuntu questing/main amd64 python3-imagesize all 1.4.1-1 [6844 B]
1658s Get:255 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B]
1658s Get:256 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-joblib all 1.4.2-3 [205 kB]
1658s Get:257 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB]
1658s Get:258 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB]
1658s Get:259 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-latexcodec all 3.0.0-1 [16.6 kB]
1658s Get:260 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pytz all 2025.1-3 [162 kB]
1658s Get:261 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tz all 2025.1-3 [1866 B]
1658s Get:262 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8build1 [5332 kB]
1658s Get:263 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB]
1658s Get:264 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic-core amd64 2.27.2-1build1 [1622 kB]
1658s Get:265 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pydantic amd64 2.10.6-1 [288 kB]
1658s Get:266 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-tqdm all 4.67.1-3 [91.6 kB]
1658s Get:267 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml.clib amd64 0.2.12+ds-1build1 [164 kB]
1658s Get:268 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ruamel.yaml all 0.18.10+ds-1 [127 kB]
1658s Get:269 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-monty all 2025.3.3-1 [40.4 kB]
1658s Get:270 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB]
1658s Get:271 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-netcdf4 amd64 1.7.2-1build4 [667 kB]
1659s Get:272 http://ftpmaster.internal/ubuntu questing/main amd64 python3-networkx all 3.2.1-4ubuntu1 [11.5 MB]
1659s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-openbabel amd64 3.1.1+dfsg-11ubuntu3 [671 kB]
1659s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-palettable all 3.3.3-1 [81.3 kB]
1659s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-phonopy amd64 2.35.0-1 [325 kB]
1659s Get:276 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB]
1659s Get:277 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB]
1659s Get:278 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB]
1659s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pybtex all 0.24.0-4 [70.0 kB]
1659s Get:280 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB]
1659s Get:281 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-uncertainties all 3.2.2-1 [51.4 kB]
1659s Get:282 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pymatgen amd64 2025.2.18+dfsg1-4 [2663 kB]
1659s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest all 8.3.5-1 [252 kB]
1659s Get:284 http://ftpmaster.internal/ubuntu questing/main amd64 python3-snowballstemmer all 2.2.0-4build1 [59.8 kB]
1659s Get:285 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-common all 8.1.3-5 [663 kB]
1659s Get:286 http://ftpmaster.internal/ubuntu questing/main amd64 python3-alabaster all 0.7.16-0.1 [18.5 kB]
1659s Get:287 http://ftpmaster.internal/ubuntu questing/main amd64 python3-sphinx all 8.1.3-5 [474 kB]
1659s Get:288 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinxcontrib.jquery all 4.1-5 [6678 B]
1659s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sphinx-rtd-theme all 3.0.2+dfsg-2 [23.5 kB]
1659s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B]
1659s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpi4py amd64 4.0.3-3ubuntu1 [836 kB]
1659s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-vtk9 amd64 9.3.0+dfsg1-4ubuntu1 [7839 kB]
1660s Fetched 553 MB in 26s (21.6 MB/s)
1661s Selecting previously unselected package fonts-lato.
1661s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 80518 files and directories currently installed.)
1661s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ...
1661s Unpacking fonts-lato (2.015-1) ...
1661s Selecting previously unselected package python3-numpy-dev:amd64.
1661s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ...
1661s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ...
1661s Selecting previously unselected package libblas3:amd64.
1661s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ...
1661s Unpacking libblas3:amd64 (3.12.1-2) ...
1661s Selecting previously unselected package libgfortran5:amd64.
1661s Preparing to unpack .../003-libgfortran5_15-20250404-0ubuntu1_amd64.deb ...
1661s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ...
1661s Selecting previously unselected package liblapack3:amd64.
1661s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ...
1661s Unpacking liblapack3:amd64 (3.12.1-2) ...
1661s Selecting previously unselected package python3-numpy.
1661s Preparing to unpack .../005-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ...
1661s Unpacking python3-numpy (1:2.2.3+ds-5) ...
1661s Selecting previously unselected package sgml-base.
1661s Preparing to unpack .../006-sgml-base_1.31_all.deb ...
1661s Unpacking sgml-base (1.31) ...
1661s Selecting previously unselected package m4.
1661s Preparing to unpack .../007-m4_1.4.19-7_amd64.deb ...
1661s Unpacking m4 (1.4.19-7) ...
1661s Selecting previously unselected package autoconf.
1661s Preparing to unpack .../008-autoconf_2.72-3ubuntu1_all.deb ...
1661s Unpacking autoconf (2.72-3ubuntu1) ...
1661s Selecting previously unselected package autotools-dev.
1661s Preparing to unpack .../009-autotools-dev_20220109.1_all.deb ...
1661s Unpacking autotools-dev (20220109.1) ...
1661s Selecting previously unselected package automake.
1661s Preparing to unpack .../010-automake_1%3a1.17-3ubuntu1_all.deb ...
1661s Unpacking automake (1:1.17-3ubuntu1) ...
1662s Selecting previously unselected package autopoint.
1662s Preparing to unpack .../011-autopoint_0.23.1-1_all.deb ...
1662s Unpacking autopoint (0.23.1-1) ...
1662s Selecting previously unselected package libtcl8.6:amd64.
1662s Preparing to unpack .../012-libtcl8.6_8.6.16+dfsg-1_amd64.deb ...
1662s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ...
1662s Selecting previously unselected package fonts-dejavu-mono.
1662s Preparing to unpack .../013-fonts-dejavu-mono_2.37-8_all.deb ...
1662s Unpacking fonts-dejavu-mono (2.37-8) ...
1662s Selecting previously unselected package fonts-dejavu-core.
1662s Preparing to unpack .../014-fonts-dejavu-core_2.37-8_all.deb ...
1662s Unpacking fonts-dejavu-core (2.37-8) ...
1662s Selecting previously unselected package fontconfig-config.
1662s Preparing to unpack .../015-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ...
1662s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ...
1662s Selecting previously unselected package libfontconfig1:amd64.
1662s Preparing to unpack .../016-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ...
1662s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
1662s Selecting previously unselected package libxrender1:amd64.
1662s Preparing to unpack .../017-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ...
1662s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ...
1662s Selecting previously unselected package libxft2:amd64.
1662s Preparing to unpack .../018-libxft2_2.3.6-1build1_amd64.deb ...
1662s Unpacking libxft2:amd64 (2.3.6-1build1) ...
1662s Selecting previously unselected package x11-common.
1662s Preparing to unpack .../019-x11-common_1%3a7.7+23ubuntu4_all.deb ...
1662s Unpacking x11-common (1:7.7+23ubuntu4) ...
1662s Selecting previously unselected package libxss1:amd64.
1662s Preparing to unpack .../020-libxss1_1%3a1.2.3-1build3_amd64.deb ...
1662s Unpacking libxss1:amd64 (1:1.2.3-1build3) ...
1662s Selecting previously unselected package libtk8.6:amd64.
1662s Preparing to unpack .../021-libtk8.6_8.6.16-1_amd64.deb ...
1662s Unpacking libtk8.6:amd64 (8.6.16-1) ...
1662s Selecting previously unselected package tk8.6-blt2.5.
1662s Preparing to unpack .../022-tk8.6-blt2.5_2.5.3+dfsg-8_amd64.deb ...
1662s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-8) ...
1662s Selecting previously unselected package blt.
1662s Preparing to unpack .../023-blt_2.5.3+dfsg-8_amd64.deb ...
1662s Unpacking blt (2.5.3+dfsg-8) ...
1662s Selecting previously unselected package libisl23:amd64.
1662s Preparing to unpack .../024-libisl23_0.27-1_amd64.deb ...
1662s Unpacking libisl23:amd64 (0.27-1) ...
1662s Selecting previously unselected package libmpc3:amd64.
1662s Preparing to unpack .../025-libmpc3_1.3.1-1build2_amd64.deb ...
1662s Unpacking libmpc3:amd64 (1.3.1-1build2) ...
1662s Selecting previously unselected package cpp-14-x86-64-linux-gnu.
1662s Preparing to unpack .../026-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
1662s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
1663s Selecting previously unselected package cpp-14.
1663s Preparing to unpack .../027-cpp-14_14.2.0-19ubuntu2_amd64.deb ...
1663s Unpacking cpp-14 (14.2.0-19ubuntu2) ...
1663s Selecting previously unselected package cpp-x86-64-linux-gnu.
1663s Preparing to unpack .../028-cpp-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
1663s Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1663s Selecting previously unselected package cpp.
1663s Preparing to unpack .../029-cpp_4%3a14.2.0-1ubuntu1_amd64.deb ...
1663s Unpacking cpp (4:14.2.0-1ubuntu1) ...
1663s Selecting previously unselected package libcc1-0:amd64.
1663s Preparing to unpack .../030-libcc1-0_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libgomp1:amd64.
1663s Preparing to unpack .../031-libgomp1_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libitm1:amd64.
1663s Preparing to unpack .../032-libitm1_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libasan8:amd64.
1663s Preparing to unpack .../033-libasan8_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package liblsan0:amd64.
1663s Preparing to unpack .../034-liblsan0_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libtsan2:amd64.
1663s Preparing to unpack .../035-libtsan2_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libubsan1:amd64.
1663s Preparing to unpack .../036-libubsan1_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libhwasan0:amd64.
1663s Preparing to unpack .../037-libhwasan0_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libquadmath0:amd64.
1663s Preparing to unpack .../038-libquadmath0_15-20250404-0ubuntu1_amd64.deb ...
1663s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ...
1663s Selecting previously unselected package libgcc-14-dev:amd64.
1663s Preparing to unpack .../039-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ...
1663s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ...
1663s Selecting previously unselected package gcc-14-x86-64-linux-gnu.
1663s Preparing to unpack .../040-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
1663s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
1664s Selecting previously unselected package gcc-14.
1664s Preparing to unpack .../041-gcc-14_14.2.0-19ubuntu2_amd64.deb ...
1664s Unpacking gcc-14 (14.2.0-19ubuntu2) ...
1664s Selecting previously unselected package gcc-x86-64-linux-gnu.
1664s Preparing to unpack .../042-gcc-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
1664s Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1664s Selecting previously unselected package gcc.
1664s Preparing to unpack .../043-gcc_4%3a14.2.0-1ubuntu1_amd64.deb ...
1664s Unpacking gcc (4:14.2.0-1ubuntu1) ...
1664s Selecting previously unselected package libstdc++-14-dev:amd64.
1664s Preparing to unpack .../044-libstdc++-14-dev_14.2.0-19ubuntu2_amd64.deb ...
1664s Unpacking libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ...
1664s Selecting previously unselected package g++-14-x86-64-linux-gnu.
1664s Preparing to unpack .../045-g++-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ...
1664s Unpacking g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
1664s Selecting previously unselected package g++-14.
1664s Preparing to unpack .../046-g++-14_14.2.0-19ubuntu2_amd64.deb ...
1664s Unpacking g++-14 (14.2.0-19ubuntu2) ...
1664s Selecting previously unselected package g++-x86-64-linux-gnu.
1664s Preparing to unpack .../047-g++-x86-64-linux-gnu_4%3a14.2.0-1ubuntu1_amd64.deb ...
1664s Unpacking g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1664s Selecting previously unselected package g++.
1664s Preparing to unpack .../048-g++_4%3a14.2.0-1ubuntu1_amd64.deb ...
1664s Unpacking g++ (4:14.2.0-1ubuntu1) ...
1664s Selecting previously unselected package build-essential.
1664s Preparing to unpack .../049-build-essential_12.12ubuntu1_amd64.deb ...
1664s Unpacking build-essential (12.12ubuntu1) ...
1664s Selecting previously unselected package cython3.
1664s Preparing to unpack .../050-cython3_3.0.11+dfsg-2ubuntu2_amd64.deb ...
1664s Unpacking cython3 (3.0.11+dfsg-2ubuntu2) ...
1664s Selecting previously unselected package libdebhelper-perl.
1664s Preparing to unpack .../051-libdebhelper-perl_13.24.1ubuntu2_all.deb ...
1664s Unpacking libdebhelper-perl (13.24.1ubuntu2) ...
1664s Selecting previously unselected package libtool.
1664s Preparing to unpack .../052-libtool_2.5.4-4_all.deb ...
1664s Unpacking libtool (2.5.4-4) ...
1664s Selecting previously unselected package dh-autoreconf.
1664s Preparing to unpack .../053-dh-autoreconf_20_all.deb ...
1664s Unpacking dh-autoreconf (20) ...
1664s Selecting previously unselected package libarchive-zip-perl.
1664s Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ...
1664s Unpacking libarchive-zip-perl (1.68-1) ...
1664s Selecting previously unselected package libfile-stripnondeterminism-perl.
1664s Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ...
1664s Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ...
1664s Selecting previously unselected package dh-strip-nondeterminism.
1664s Preparing to unpack .../056-dh-strip-nondeterminism_1.14.1-2_all.deb ...
1664s Unpacking dh-strip-nondeterminism (1.14.1-2) ...
1664s Selecting previously unselected package debugedit.
1664s Preparing to unpack .../057-debugedit_1%3a5.1-2_amd64.deb ...
1664s Unpacking debugedit (1:5.1-2) ...
1664s Selecting previously unselected package dwz.
1664s Preparing to unpack .../058-dwz_0.15-1build6_amd64.deb ...
1664s Unpacking dwz (0.15-1build6) ...
1664s Selecting previously unselected package gettext.
1664s Preparing to unpack .../059-gettext_0.23.1-1_amd64.deb ...
1664s Unpacking gettext (0.23.1-1) ...
1664s Selecting previously unselected package intltool-debian.
1664s Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ...
1664s Unpacking intltool-debian (0.35.0+20060710.6) ...
1664s Selecting previously unselected package po-debconf.
1664s Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ...
1664s Unpacking po-debconf (1.0.21+nmu1) ...
1665s Selecting previously unselected package debhelper.
1665s Preparing to unpack .../062-debhelper_13.24.1ubuntu2_all.deb ...
1665s Unpacking debhelper (13.24.1ubuntu2) ...
1665s Selecting previously unselected package dh-python.
1665s Preparing to unpack .../063-dh-python_6.20250308_all.deb ...
1665s Unpacking dh-python (6.20250308) ...
1665s Selecting previously unselected package xml-core.
1665s Preparing to unpack .../064-xml-core_0.19_all.deb ...
1665s Unpacking xml-core (0.19) ...
1665s Selecting previously unselected package docutils-common.
1665s Preparing to unpack .../065-docutils-common_0.21.2+dfsg-2_all.deb ...
1665s Unpacking docutils-common (0.21.2+dfsg-2) ...
1665s Selecting previously unselected package fontconfig.
1665s Preparing to unpack .../066-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ...
1665s Unpacking fontconfig (2.15.0-2.2ubuntu1) ...
1665s Selecting previously unselected package fonts-font-awesome.
1665s Preparing to unpack .../067-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
1665s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
1665s Selecting previously unselected package fonts-glyphicons-halflings.
1665s Preparing to unpack .../068-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
1665s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
1665s Selecting previously unselected package fonts-lyx.
1665s Preparing to unpack .../069-fonts-lyx_2.4.3-1_all.deb ...
1665s Unpacking fonts-lyx (2.4.3-1) ...
1665s Selecting previously unselected package fonts-mathjax.
1665s Preparing to unpack .../070-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
1665s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
1665s Selecting previously unselected package libaec0:amd64.
1665s Preparing to unpack .../071-libaec0_1.1.3-1_amd64.deb ...
1665s Unpacking libaec0:amd64 (1.1.3-1) ...
1665s Selecting previously unselected package libllvm17t64:amd64.
1665s Preparing to unpack .../072-libllvm17t64_1%3a17.0.6-21_amd64.deb ...
1665s Unpacking libllvm17t64:amd64 (1:17.0.6-21) ...
1666s Selecting previously unselected package libamd-comgr2:amd64.
1666s Preparing to unpack .../073-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ...
1666s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ...
1666s Selecting previously unselected package libhsakmt1:amd64.
1666s Preparing to unpack .../074-libhsakmt1_5.7.0-1build1_amd64.deb ...
1666s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ...
1666s Selecting previously unselected package libhsa-runtime64-1.
1666s Preparing to unpack .../075-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ...
1666s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ...
1666s Selecting previously unselected package libamdhip64-5.
1666s Preparing to unpack .../076-libamdhip64-5_5.7.1-5.1_amd64.deb ...
1666s Unpacking libamdhip64-5 (5.7.1-5.1) ...
1666s Selecting previously unselected package libboost-iostreams1.83.0:amd64.
1666s Preparing to unpack .../077-libboost-iostreams1.83.0_1.83.0-4.2ubuntu1_amd64.deb ...
1666s Unpacking libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ...
1666s Selecting previously unselected package libpixman-1-0:amd64.
1666s Preparing to unpack .../078-libpixman-1-0_0.44.0-3_amd64.deb ...
1666s Unpacking libpixman-1-0:amd64 (0.44.0-3) ...
1666s Selecting previously unselected package libxcb-render0:amd64.
1666s Preparing to unpack .../079-libxcb-render0_1.17.0-2_amd64.deb ...
1666s Unpacking libxcb-render0:amd64 (1.17.0-2) ...
1666s Selecting previously unselected package libxcb-shm0:amd64.
1666s Preparing to unpack .../080-libxcb-shm0_1.17.0-2_amd64.deb ...
1666s Unpacking libxcb-shm0:amd64 (1.17.0-2) ...
1666s Selecting previously unselected package libcairo2:amd64.
1666s Preparing to unpack .../081-libcairo2_1.18.4-1_amd64.deb ...
1666s Unpacking libcairo2:amd64 (1.18.4-1) ...
1666s Selecting previously unselected package libdeflate0:amd64.
1666s Preparing to unpack .../082-libdeflate0_1.23-2_amd64.deb ...
1666s Unpacking libdeflate0:amd64 (1.23-2) ...
1666s Selecting previously unselected package libdouble-conversion3:amd64.
1666s Preparing to unpack .../083-libdouble-conversion3_3.3.1-1_amd64.deb ...
1666s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ...
1666s Selecting previously unselected package libpciaccess0:amd64.
1666s Preparing to unpack .../084-libpciaccess0_0.17-3build1_amd64.deb ...
1666s Unpacking libpciaccess0:amd64 (0.17-3build1) ...
1666s Selecting previously unselected package libdrm-intel1:amd64.
1666s Preparing to unpack .../085-libdrm-intel1_2.4.124-2_amd64.deb ...
1666s Unpacking libdrm-intel1:amd64 (2.4.124-2) ...
1666s Selecting previously unselected package libwayland-server0:amd64.
1666s Preparing to unpack .../086-libwayland-server0_1.23.1-3_amd64.deb ...
1666s Unpacking libwayland-server0:amd64 (1.23.1-3) ...
1666s Selecting previously unselected package libx11-xcb1:amd64.
1666s Preparing to unpack .../087-libx11-xcb1_2%3a1.8.10-2_amd64.deb ...
1666s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ...
1667s Selecting previously unselected package libxcb-dri3-0:amd64.
1667s Preparing to unpack .../088-libxcb-dri3-0_1.17.0-2_amd64.deb ...
1667s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ...
1667s Selecting previously unselected package libxcb-present0:amd64.
1667s Preparing to unpack .../089-libxcb-present0_1.17.0-2_amd64.deb ...
1667s Unpacking libxcb-present0:amd64 (1.17.0-2) ...
1667s Selecting previously unselected package libxcb-randr0:amd64.
1667s Preparing to unpack .../090-libxcb-randr0_1.17.0-2_amd64.deb ...
1667s Unpacking libxcb-randr0:amd64 (1.17.0-2) ...
1667s Selecting previously unselected package libxcb-sync1:amd64.
1667s Preparing to unpack .../091-libxcb-sync1_1.17.0-2_amd64.deb ...
1667s Unpacking libxcb-sync1:amd64 (1.17.0-2) ...
1667s Selecting previously unselected package libxcb-xfixes0:amd64.
1667s Preparing to unpack .../092-libxcb-xfixes0_1.17.0-2_amd64.deb ...
1667s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ...
1667s Selecting previously unselected package libxshmfence1:amd64.
1667s Preparing to unpack .../093-libxshmfence1_1.3.3-1_amd64.deb ...
1667s Unpacking libxshmfence1:amd64 (1.3.3-1) ...
1667s Selecting previously unselected package mesa-libgallium:amd64.
1667s Preparing to unpack .../094-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ...
1667s Unpacking mesa-libgallium:amd64 (25.0.3-1ubuntu2) ...
1667s Selecting previously unselected package libgbm1:amd64.
1667s Preparing to unpack .../095-libgbm1_25.0.3-1ubuntu2_amd64.deb ...
1667s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ...
1667s Selecting previously unselected package libwayland-client0:amd64.
1667s Preparing to unpack .../096-libwayland-client0_1.23.1-3_amd64.deb ...
1667s Unpacking libwayland-client0:amd64 (1.23.1-3) ...
1667s Selecting previously unselected package libegl-mesa0:amd64.
1667s Preparing to unpack .../097-libegl-mesa0_25.0.3-1ubuntu2_amd64.deb ...
1667s Unpacking libegl-mesa0:amd64 (25.0.3-1ubuntu2) ...
1667s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64.
1667s Preparing to unpack .../098-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ...
1667s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ...
1667s Selecting previously unselected package libexpat1-dev:amd64.
1667s Preparing to unpack .../099-libexpat1-dev_2.7.1-1_amd64.deb ...
1667s Unpacking libexpat1-dev:amd64 (2.7.1-1) ...
1667s Selecting previously unselected package libpsm-infinipath1.
1667s Preparing to unpack .../100-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ...
1667s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ...
1667s Selecting previously unselected package libpsm2-2.
1667s Preparing to unpack .../101-libpsm2-2_11.2.185-2.1_amd64.deb ...
1667s Unpacking libpsm2-2 (11.2.185-2.1) ...
1667s Selecting previously unselected package librdmacm1t64:amd64.
1667s Preparing to unpack .../102-librdmacm1t64_56.0-4ubuntu1_amd64.deb ...
1667s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ...
1667s Selecting previously unselected package libfabric1:amd64.
1667s Preparing to unpack .../103-libfabric1_1.17.0-3.1_amd64.deb ...
1667s Unpacking libfabric1:amd64 (1.17.0-3.1) ...
1667s Selecting previously unselected package libvulkan1:amd64.
1667s Preparing to unpack .../104-libvulkan1_1.4.304.0-1_amd64.deb ...
1667s Unpacking libvulkan1:amd64 (1.4.304.0-1) ...
1667s Selecting previously unselected package libgl1-mesa-dri:amd64.
1667s Preparing to unpack .../105-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ...
1667s Unpacking libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ...
1667s Selecting previously unselected package libglvnd0:amd64.
1667s Preparing to unpack .../106-libglvnd0_1.7.0-1build1_amd64.deb ...
1667s Unpacking libglvnd0:amd64 (1.7.0-1build1) ...
1667s Selecting previously unselected package libxcb-glx0:amd64.
1667s Preparing to unpack .../107-libxcb-glx0_1.17.0-2_amd64.deb ...
1667s Unpacking libxcb-glx0:amd64 (1.17.0-2) ...
1667s Selecting previously unselected package libxxf86vm1:amd64.
1667s Preparing to unpack .../108-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ...
1667s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ...
1667s Selecting previously unselected package libglx-mesa0:amd64.
1667s Preparing to unpack .../109-libglx-mesa0_25.0.3-1ubuntu2_amd64.deb ...
1667s Unpacking libglx-mesa0:amd64 (25.0.3-1ubuntu2) ...
1667s Selecting previously unselected package libglx0:amd64.
1667s Preparing to unpack .../110-libglx0_1.7.0-1build1_amd64.deb ...
1667s Unpacking libglx0:amd64 (1.7.0-1build1) ...
1667s Selecting previously unselected package libgl1:amd64.
1667s Preparing to unpack .../111-libgl1_1.7.0-1build1_amd64.deb ...
1667s Unpacking libgl1:amd64 (1.7.0-1build1) ...
1668s Selecting previously unselected package libgl2ps1.4.
1668s Preparing to unpack .../112-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ...
1668s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
1668s Selecting previously unselected package libglew2.2:amd64.
1668s Preparing to unpack .../113-libglew2.2_2.2.0-4build1_amd64.deb ...
1668s Unpacking libglew2.2:amd64 (2.2.0-4build1) ...
1668s Selecting previously unselected package libgraphite2-3:amd64.
1668s Preparing to unpack .../114-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ...
1668s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
1668s Selecting previously unselected package libharfbuzz0b:amd64.
1668s Preparing to unpack .../115-libharfbuzz0b_10.2.0-1_amd64.deb ...
1668s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ...
1668s Selecting previously unselected package libsz2:amd64.
1668s Preparing to unpack .../116-libsz2_1.1.3-1_amd64.deb ...
1668s Unpacking libsz2:amd64 (1.1.3-1) ...
1668s Selecting previously unselected package libhdf5-310:amd64.
1668s Preparing to unpack .../117-libhdf5-310_1.14.5+repack-3_amd64.deb ...
1668s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ...
1668s Selecting previously unselected package libhdf5-hl-310:amd64.
1668s Preparing to unpack .../118-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ...
1668s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
1668s Selecting previously unselected package libhwloc15:amd64.
1668s Preparing to unpack .../119-libhwloc15_2.12.0-1_amd64.deb ...
1668s Unpacking libhwloc15:amd64 (2.12.0-1) ...
1668s Selecting previously unselected package libice6:amd64.
1668s Preparing to unpack .../120-libice6_2%3a1.1.1-1_amd64.deb ...
1668s Unpacking libice6:amd64 (2:1.1.1-1) ...
1668s Selecting previously unselected package libimagequant0:amd64.
1668s Preparing to unpack .../121-libimagequant0_2.18.0-1build1_amd64.deb ...
1668s Unpacking libimagequant0:amd64 (2.18.0-1build1) ...
1668s Selecting previously unselected package libinchi1.07.
1668s Preparing to unpack .../122-libinchi1.07_1.07.3+dfsg-1_amd64.deb ...
1668s Unpacking libinchi1.07 (1.07.3+dfsg-1) ...
1668s Selecting previously unselected package libwacom-common.
1668s Preparing to unpack .../123-libwacom-common_2.14.0-1_all.deb ...
1668s Unpacking libwacom-common (2.14.0-1) ...
1668s Selecting previously unselected package libwacom9:amd64.
1668s Preparing to unpack .../124-libwacom9_2.14.0-1_amd64.deb ...
1668s Unpacking libwacom9:amd64 (2.14.0-1) ...
1668s Selecting previously unselected package libinput-bin.
1668s Preparing to unpack .../125-libinput-bin_1.27.1-1_amd64.deb ...
1668s Unpacking libinput-bin (1.27.1-1) ...
1668s Selecting previously unselected package libmtdev1t64:amd64.
1668s Preparing to unpack .../126-libmtdev1t64_1.1.7-1_amd64.deb ...
1668s Unpacking libmtdev1t64:amd64 (1.1.7-1) ...
1668s Selecting previously unselected package libinput10:amd64.
1668s Preparing to unpack .../127-libinput10_1.27.1-1_amd64.deb ...
1668s Unpacking libinput10:amd64 (1.27.1-1) ...
1668s Selecting previously unselected package libjpeg-turbo8:amd64.
1668s Preparing to unpack .../128-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ...
1668s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
1668s Selecting previously unselected package libjpeg8:amd64.
1668s Preparing to unpack .../129-libjpeg8_8c-2ubuntu11_amd64.deb ...
1668s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ...
1668s Selecting previously unselected package libjs-bootstrap.
1668s Preparing to unpack .../130-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
1668s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
1668s Selecting previously unselected package libjs-jquery.
1668s Preparing to unpack .../131-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
1668s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1668s Selecting previously unselected package libjs-jquery-ui.
1668s Preparing to unpack .../132-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
1668s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ...
1669s Selecting previously unselected package libjs-underscore.
1669s Preparing to unpack .../133-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ...
1669s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1669s Selecting previously unselected package libjs-sphinxdoc.
1669s Preparing to unpack .../134-libjs-sphinxdoc_8.1.3-5_all.deb ...
1669s Unpacking libjs-sphinxdoc (8.1.3-5) ...
1669s Selecting previously unselected package libjson-perl.
1669s Preparing to unpack .../135-libjson-perl_4.10000-1_all.deb ...
1669s Unpacking libjson-perl (4.10000-1) ...
1669s Selecting previously unselected package libjsoncpp26:amd64.
1669s Preparing to unpack .../136-libjsoncpp26_1.9.6-3_amd64.deb ...
1669s Unpacking libjsoncpp26:amd64 (1.9.6-3) ...
1669s Selecting previously unselected package liblbfgsb0:amd64.
1669s Preparing to unpack .../137-liblbfgsb0_3.0+dfsg.4-1build1_amd64.deb ...
1669s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
1669s Selecting previously unselected package liblcms2-2:amd64.
1669s Preparing to unpack .../138-liblcms2-2_2.16-2_amd64.deb ...
1669s Unpacking liblcms2-2:amd64 (2.16-2) ...
1669s Selecting previously unselected package liblerc4:amd64.
1669s Preparing to unpack .../139-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ...
1669s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
1669s Selecting previously unselected package liblzf1:amd64.
1669s Preparing to unpack .../140-liblzf1_3.6-4_amd64.deb ...
1669s Unpacking liblzf1:amd64 (3.6-4) ...
1669s Selecting previously unselected package libmaeparser1:amd64.
1669s Preparing to unpack .../141-libmaeparser1_1.3.1-1build1_amd64.deb ...
1669s Unpacking libmaeparser1:amd64 (1.3.1-1build1) ...
1669s Selecting previously unselected package libmd4c0:amd64.
1669s Preparing to unpack .../142-libmd4c0_0.5.2-2_amd64.deb ...
1669s Unpacking libmd4c0:amd64 (0.5.2-2) ...
1669s Selecting previously unselected package libnetcdf22:amd64.
1669s Preparing to unpack .../143-libnetcdf22_1%3a4.9.3-1_amd64.deb ...
1669s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ...
1669s Selecting previously unselected package libogg0:amd64.
1669s Preparing to unpack .../144-libogg0_1.3.5-3build1_amd64.deb ...
1669s Unpacking libogg0:amd64 (1.3.5-3build1) ...
1669s Selecting previously unselected package libopenbabel7.
1669s Preparing to unpack .../145-libopenbabel7_3.1.1+dfsg-11ubuntu3_amd64.deb ...
1669s Unpacking libopenbabel7 (3.1.1+dfsg-11ubuntu3) ...
1669s Selecting previously unselected package libmunge2:amd64.
1669s Preparing to unpack .../146-libmunge2_0.5.16-1_amd64.deb ...
1669s Unpacking libmunge2:amd64 (0.5.16-1) ...
1669s Selecting previously unselected package libxnvctrl0:amd64.
1669s Preparing to unpack .../147-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ...
1669s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ...
1669s Selecting previously unselected package ocl-icd-libopencl1:amd64.
1669s Preparing to unpack .../148-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ...
1669s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
1669s Selecting previously unselected package libhwloc-plugins:amd64.
1669s Preparing to unpack .../149-libhwloc-plugins_2.12.0-1_amd64.deb ...
1669s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ...
1669s Selecting previously unselected package libpmix2t64:amd64.
1669s Preparing to unpack .../150-libpmix2t64_5.0.6-5_amd64.deb ...
1669s Unpacking libpmix2t64:amd64 (5.0.6-5) ...
1669s Selecting previously unselected package libibumad3:amd64.
1669s Preparing to unpack .../151-libibumad3_56.0-4ubuntu1_amd64.deb ...
1669s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ...
1669s Selecting previously unselected package libibmad5:amd64.
1669s Preparing to unpack .../152-libibmad5_56.0-4ubuntu1_amd64.deb ...
1669s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ...
1669s Selecting previously unselected package libucx0:amd64.
1669s Preparing to unpack .../153-libucx0_1.18.1+ds-2_amd64.deb ...
1669s Unpacking libucx0:amd64 (1.18.1+ds-2) ...
1669s Selecting previously unselected package libopenmpi40:amd64.
1669s Preparing to unpack .../154-libopenmpi40_5.0.7-1_amd64.deb ...
1669s Unpacking libopenmpi40:amd64 (5.0.7-1) ...
1669s Selecting previously unselected package libpcre2-16-0:amd64.
1669s Preparing to unpack .../155-libpcre2-16-0_10.45-1_amd64.deb ...
1669s Unpacking libpcre2-16-0:amd64 (10.45-1) ...
1669s Selecting previously unselected package proj-data.
1670s Preparing to unpack .../156-proj-data_9.5.1-1_all.deb ...
1670s Unpacking proj-data (9.5.1-1) ...
1670s Selecting previously unselected package libjbig0:amd64.
1670s Preparing to unpack .../157-libjbig0_2.1-6.1ubuntu2_amd64.deb ...
1670s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ...
1670s Selecting previously unselected package libsharpyuv0:amd64.
1670s Preparing to unpack .../158-libsharpyuv0_1.5.0-0.1_amd64.deb ...
1670s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ...
1670s Selecting previously unselected package libwebp7:amd64.
1670s Preparing to unpack .../159-libwebp7_1.5.0-0.1_amd64.deb ...
1670s Unpacking libwebp7:amd64 (1.5.0-0.1) ...
1670s Selecting previously unselected package libtiff6:amd64.
1670s Preparing to unpack .../160-libtiff6_4.7.0-3ubuntu1_amd64.deb ...
1670s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ...
1670s Selecting previously unselected package libproj25:amd64.
1670s Preparing to unpack .../161-libproj25_9.5.1-1_amd64.deb ...
1670s Unpacking libproj25:amd64 (9.5.1-1) ...
1670s Selecting previously unselected package zlib1g-dev:amd64.
1670s Preparing to unpack .../162-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ...
1670s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1670s Selecting previously unselected package libpython3.13-dev:amd64.
1670s Preparing to unpack .../163-libpython3.13-dev_3.13.3-1_amd64.deb ...
1670s Unpacking libpython3.13-dev:amd64 (3.13.3-1) ...
1670s Selecting previously unselected package libpython3-dev:amd64.
1670s Preparing to unpack .../164-libpython3-dev_3.13.3-1_amd64.deb ...
1670s Unpacking libpython3-dev:amd64 (3.13.3-1) ...
1670s Selecting previously unselected package libpython3-all-dev:amd64.
1670s Preparing to unpack .../165-libpython3-all-dev_3.13.3-1_amd64.deb ...
1670s Unpacking libpython3-all-dev:amd64 (3.13.3-1) ...
1670s Selecting previously unselected package libqhull-r8.0:amd64.
1670s Preparing to unpack .../166-libqhull-r8.0_2020.2-6build1_amd64.deb ...
1670s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ...
1670s Selecting previously unselected package libqt5core5t64:amd64.
1670s Preparing to unpack .../167-libqt5core5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ...
1670s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1670s Selecting previously unselected package libqt5dbus5t64:amd64.
1670s Preparing to unpack .../168-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ...
1670s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1670s Selecting previously unselected package libegl1:amd64.
1670s Preparing to unpack .../169-libegl1_1.7.0-1build1_amd64.deb ...
1670s Unpacking libegl1:amd64 (1.7.0-1build1) ...
1670s Selecting previously unselected package libqt5network5t64:amd64.
1670s Preparing to unpack .../170-libqt5network5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ...
1670s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1670s Selecting previously unselected package libsm6:amd64.
1670s Preparing to unpack .../171-libsm6_2%3a1.2.4-1_amd64.deb ...
1670s Unpacking libsm6:amd64 (2:1.2.4-1) ...
1670s Selecting previously unselected package libxcb-icccm4:amd64.
1670s Preparing to unpack .../172-libxcb-icccm4_0.4.2-1_amd64.deb ...
1670s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ...
1670s Selecting previously unselected package libxcb-util1:amd64.
1670s Preparing to unpack .../173-libxcb-util1_0.4.1-1_amd64.deb ...
1670s Unpacking libxcb-util1:amd64 (0.4.1-1) ...
1671s Selecting previously unselected package libxcb-image0:amd64.
1671s Preparing to unpack .../174-libxcb-image0_0.4.0-2build1_amd64.deb ...
1671s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ...
1671s Selecting previously unselected package libxcb-keysyms1:amd64.
1671s Preparing to unpack .../175-libxcb-keysyms1_0.4.1-1_amd64.deb ...
1671s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ...
1671s Selecting previously unselected package libxcb-render-util0:amd64.
1671s Preparing to unpack .../176-libxcb-render-util0_0.3.10-1_amd64.deb ...
1671s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ...
1671s Selecting previously unselected package libxcb-shape0:amd64.
1671s Preparing to unpack .../177-libxcb-shape0_1.17.0-2_amd64.deb ...
1671s Unpacking libxcb-shape0:amd64 (1.17.0-2) ...
1671s Selecting previously unselected package libxcb-xinerama0:amd64.
1671s Preparing to unpack .../178-libxcb-xinerama0_1.17.0-2_amd64.deb ...
1671s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ...
1671s Selecting previously unselected package libxcb-xinput0:amd64.
1671s Preparing to unpack .../179-libxcb-xinput0_1.17.0-2_amd64.deb ...
1671s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ...
1671s Selecting previously unselected package libxcb-xkb1:amd64.
1671s Preparing to unpack .../180-libxcb-xkb1_1.17.0-2_amd64.deb ...
1671s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ...
1671s Selecting previously unselected package libxkbcommon-x11-0:amd64.
1671s Preparing to unpack .../181-libxkbcommon-x11-0_1.7.0-2_amd64.deb ...
1671s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ...
1671s Selecting previously unselected package libqt5gui5t64:amd64.
1671s Preparing to unpack .../182-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ...
1671s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1671s Selecting previously unselected package libqt5widgets5t64:amd64.
1671s Preparing to unpack .../183-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ...
1671s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1671s Selecting previously unselected package libraqm0:amd64.
1671s Preparing to unpack .../184-libraqm0_0.10.2-1_amd64.deb ...
1671s Unpacking libraqm0:amd64 (0.10.2-1) ...
1671s Selecting previously unselected package libsymspg2:amd64.
1671s Preparing to unpack .../185-libsymspg2_2.5.0-2build1_amd64.deb ...
1671s Unpacking libsymspg2:amd64 (2.5.0-2build1) ...
1671s Selecting previously unselected package libtbbbind-2-5:amd64.
1671s Preparing to unpack .../186-libtbbbind-2-5_2022.0.0-2_amd64.deb ...
1671s Unpacking libtbbbind-2-5:amd64 (2022.0.0-2) ...
1671s Selecting previously unselected package libtbbmalloc2:amd64.
1671s Preparing to unpack .../187-libtbbmalloc2_2022.0.0-2_amd64.deb ...
1671s Unpacking libtbbmalloc2:amd64 (2022.0.0-2) ...
1671s Selecting previously unselected package libtbb12:amd64.
1671s Preparing to unpack .../188-libtbb12_2022.0.0-2_amd64.deb ...
1671s Unpacking libtbb12:amd64 (2022.0.0-2) ...
1671s Selecting previously unselected package libtheoradec1:amd64.
1671s Preparing to unpack .../189-libtheoradec1_1.2.0~alpha1+dfsg-6_amd64.deb ...
1671s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ...
1671s Selecting previously unselected package libtheoraenc1:amd64.
1671s Preparing to unpack .../190-libtheoraenc1_1.2.0~alpha1+dfsg-6_amd64.deb ...
1671s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ...
1671s Selecting previously unselected package libopengl0:amd64.
1671s Preparing to unpack .../191-libopengl0_1.7.0-1build1_amd64.deb ...
1671s Unpacking libopengl0:amd64 (1.7.0-1build1) ...
1671s Selecting previously unselected package libvtk9.3:amd64.
1671s Preparing to unpack .../192-libvtk9.3_9.3.0+dfsg1-4ubuntu1_amd64.deb ...
1671s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ...
1672s Selecting previously unselected package libvtk9.3-qt:amd64.
1672s Preparing to unpack .../193-libvtk9.3-qt_9.3.0+dfsg1-4ubuntu1_amd64.deb ...
1672s Unpacking libvtk9.3-qt:amd64 (9.3.0+dfsg1-4ubuntu1) ...
1672s Selecting previously unselected package libwebpdemux2:amd64.
1672s Preparing to unpack .../194-libwebpdemux2_1.5.0-0.1_amd64.deb ...
1672s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ...
1672s Selecting previously unselected package libwebpmux3:amd64.
1672s Preparing to unpack .../195-libwebpmux3_1.5.0-0.1_amd64.deb ...
1672s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ...
1672s Selecting previously unselected package libxslt1.1:amd64.
1672s Preparing to unpack .../196-libxslt1.1_1.1.39-0exp1ubuntu4_amd64.deb ...
1672s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ...
1672s Selecting previously unselected package openmpi-common.
1672s Preparing to unpack .../197-openmpi-common_5.0.7-1_all.deb ...
1672s Unpacking openmpi-common (5.0.7-1) ...
1672s Selecting previously unselected package openmpi-bin.
1672s Preparing to unpack .../198-openmpi-bin_5.0.7-1_amd64.deb ...
1672s Unpacking openmpi-bin (5.0.7-1) ...
1672s Selecting previously unselected package packmol.
1672s Preparing to unpack .../199-packmol_1%3a20.15.3-1_amd64.deb ...
1672s Unpacking packmol (1:20.15.3-1) ...
1672s Selecting previously unselected package python3-pyproject-hooks.
1672s Preparing to unpack .../200-python3-pyproject-hooks_1.2.0-1_all.deb ...
1672s Unpacking python3-pyproject-hooks (1.2.0-1) ...
1672s Selecting previously unselected package python3-toml.
1672s Preparing to unpack .../201-python3-toml_0.10.2-1_all.deb ...
1672s Unpacking python3-toml (0.10.2-1) ...
1672s Selecting previously unselected package python3-wheel.
1672s Preparing to unpack .../202-python3-wheel_0.45.1-1_all.deb ...
1672s Unpacking python3-wheel (0.45.1-1) ...
1672s Selecting previously unselected package python3-build.
1672s Preparing to unpack .../203-python3-build_1.2.2-1_all.deb ...
1672s Unpacking python3-build (1.2.2-1) ...
1673s Selecting previously unselected package python3-installer.
1673s Preparing to unpack .../204-python3-installer_0.7.0+dfsg1-3_all.deb ...
1673s Unpacking python3-installer (0.7.0+dfsg1-3) ...
1673s Selecting previously unselected package pybuild-plugin-pyproject.
1673s Preparing to unpack .../205-pybuild-plugin-pyproject_6.20250308_all.deb ...
1673s Unpacking pybuild-plugin-pyproject (6.20250308) ...
1673s Selecting previously unselected package pymatgen-test-files.
1673s Preparing to unpack .../206-pymatgen-test-files_2025.2.18-1_all.deb ...
1673s Unpacking pymatgen-test-files (2025.2.18-1) ...
1675s Selecting previously unselected package python-matplotlib-data.
1675s Preparing to unpack .../207-python-matplotlib-data_3.10.1+dfsg1-3_all.deb ...
1675s Unpacking python-matplotlib-data (3.10.1+dfsg1-3) ...
1675s Selecting previously unselected package libjs-mathjax.
1675s Preparing to unpack .../208-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
1675s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
1675s Selecting previously unselected package sphinx-rtd-theme-common.
1675s Preparing to unpack .../209-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ...
1675s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
1675s Selecting previously unselected package python-pymatgen-doc.
1675s Preparing to unpack .../210-python-pymatgen-doc_2025.2.18+dfsg1-4_all.deb ...
1675s Unpacking python-pymatgen-doc (2025.2.18+dfsg1-4) ...
1676s Selecting previously unselected package python3-all.
1676s Preparing to unpack .../211-python3-all_3.13.3-1_amd64.deb ...
1676s Unpacking python3-all (3.13.3-1) ...
1676s Selecting previously unselected package python3.13-dev.
1676s Preparing to unpack .../212-python3.13-dev_3.13.3-1_amd64.deb ...
1676s Unpacking python3.13-dev (3.13.3-1) ...
1676s Selecting previously unselected package python3-dev.
1676s Preparing to unpack .../213-python3-dev_3.13.3-1_amd64.deb ...
1676s Unpacking python3-dev (3.13.3-1) ...
1676s Selecting previously unselected package python3-all-dev.
1676s Preparing to unpack .../214-python3-all-dev_3.13.3-1_amd64.deb ...
1676s Unpacking python3-all-dev (3.13.3-1) ...
1676s Selecting previously unselected package python3-annotated-types.
1676s Preparing to unpack .../215-python3-annotated-types_0.7.0-1_all.deb ...
1676s Unpacking python3-annotated-types (0.7.0-1) ...
1676s Selecting previously unselected package python3-decorator.
1676s Preparing to unpack .../216-python3-decorator_5.1.1-5_all.deb ...
1676s Unpacking python3-decorator (5.1.1-5) ...
1676s Selecting previously unselected package python3-scipy.
1676s Preparing to unpack .../217-python3-scipy_1.14.1-4ubuntu2_amd64.deb ...
1676s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
1676s Selecting previously unselected package python3-spglib.
1676s Preparing to unpack .../218-python3-spglib_2.5.0-2build1_amd64.deb ...
1676s Unpacking python3-spglib (2.5.0-2build1) ...
1676s Selecting previously unselected package libopenjp2-7:amd64.
1676s Preparing to unpack .../219-libopenjp2-7_2.5.3-2_amd64.deb ...
1676s Unpacking libopenjp2-7:amd64 (2.5.3-2) ...
1676s Selecting previously unselected package python3-pil:amd64.
1676s Preparing to unpack .../220-python3-pil_11.1.0-5build1_amd64.deb ...
1676s Unpacking python3-pil:amd64 (11.1.0-5build1) ...
1676s Selecting previously unselected package python3.13-tk.
1676s Preparing to unpack .../221-python3.13-tk_3.13.3-1_amd64.deb ...
1676s Unpacking python3.13-tk (3.13.3-1) ...
1676s Selecting previously unselected package python3-tk:amd64.
1676s Preparing to unpack .../222-python3-tk_3.13.3-1_amd64.deb ...
1676s Unpacking python3-tk:amd64 (3.13.3-1) ...
1676s Selecting previously unselected package python3-pil.imagetk:amd64.
1676s Preparing to unpack .../223-python3-pil.imagetk_11.1.0-5build1_amd64.deb ...
1676s Unpacking python3-pil.imagetk:amd64 (11.1.0-5build1) ...
1676s Selecting previously unselected package python3-contourpy.
1676s Preparing to unpack .../224-python3-contourpy_1.3.1-1build1_amd64.deb ...
1676s Unpacking python3-contourpy (1.3.1-1build1) ...
1676s Selecting previously unselected package python3-cycler.
1676s Preparing to unpack .../225-python3-cycler_0.12.1-1_all.deb ...
1676s Unpacking python3-cycler (0.12.1-1) ...
1676s Selecting previously unselected package python3-brotli.
1676s Preparing to unpack .../226-python3-brotli_1.1.0-2build4_amd64.deb ...
1676s Unpacking python3-brotli (1.1.0-2build4) ...
1676s Selecting previously unselected package python3-platformdirs.
1676s Preparing to unpack .../227-python3-platformdirs_4.3.6-1_all.deb ...
1676s Unpacking python3-platformdirs (4.3.6-1) ...
1676s Selecting previously unselected package python3-fs.
1676s Preparing to unpack .../228-python3-fs_2.4.16-7_all.deb ...
1676s Unpacking python3-fs (2.4.16-7) ...
1677s Selecting previously unselected package python3-lxml:amd64.
1677s Preparing to unpack .../229-python3-lxml_5.3.2-1_amd64.deb ...
1677s Unpacking python3-lxml:amd64 (5.3.2-1) ...
1677s Selecting previously unselected package python3-lz4.
1677s Preparing to unpack .../230-python3-lz4_4.4.0+dfsg-1build1_amd64.deb ...
1677s Unpacking python3-lz4 (4.4.0+dfsg-1build1) ...
1677s Selecting previously unselected package python3-mpmath.
1677s Preparing to unpack .../231-python3-mpmath_1.3.0-1_all.deb ...
1677s Unpacking python3-mpmath (1.3.0-1) ...
1677s Selecting previously unselected package python3-sympy.
1677s Preparing to unpack .../232-python3-sympy_1.13.3-5_all.deb ...
1677s Unpacking python3-sympy (1.13.3-5) ...
1677s Selecting previously unselected package python3-ufolib2.
1677s Preparing to unpack .../233-python3-ufolib2_0.17.0+dfsg1-1_all.deb ...
1677s Unpacking python3-ufolib2 (0.17.0+dfsg1-1) ...
1677s Selecting previously unselected package python3-unicodedata2.
1677s Preparing to unpack .../234-python3-unicodedata2_15.1.0+ds-1build3_amd64.deb ...
1677s Unpacking python3-unicodedata2 (15.1.0+ds-1build3) ...
1677s Selecting previously unselected package unicode-data.
1677s Preparing to unpack .../235-unicode-data_15.1.0-1_all.deb ...
1677s Unpacking unicode-data (15.1.0-1) ...
1677s Selecting previously unselected package python3-fonttools.
1677s Preparing to unpack .../236-python3-fonttools_4.55.3-2build1_amd64.deb ...
1677s Unpacking python3-fonttools (4.55.3-2build1) ...
1677s Selecting previously unselected package python3-kiwisolver.
1677s Preparing to unpack .../237-python3-kiwisolver_1.4.7-3build1_amd64.deb ...
1677s Unpacking python3-kiwisolver (1.4.7-3build1) ...
1678s Selecting previously unselected package python3-matplotlib.
1678s Preparing to unpack .../238-python3-matplotlib_3.10.1+dfsg1-3_amd64.deb ...
1678s Unpacking python3-matplotlib (3.10.1+dfsg1-3) ...
1678s Selecting previously unselected package python3-ase.
1678s Preparing to unpack .../239-python3-ase_3.24.0-1_all.deb ...
1678s Unpacking python3-ase (3.24.0-1) ...
1678s Selecting previously unselected package python3-soupsieve.
1678s Preparing to unpack .../240-python3-soupsieve_2.7-1_all.deb ...
1678s Unpacking python3-soupsieve (2.7-1) ...
1678s Selecting previously unselected package python3-bs4.
1678s Preparing to unpack .../241-python3-bs4_4.13.3-2_all.deb ...
1678s Unpacking python3-bs4 (4.13.3-2) ...
1678s Selecting previously unselected package python3-bson.
1678s Preparing to unpack .../242-python3-bson_4.10.1-5build1_all.deb ...
1678s Unpacking python3-bson (4.10.1-5build1) ...
1678s Selecting previously unselected package python3-cftime.
1678s Preparing to unpack .../243-python3-cftime_1.6.4-2_amd64.deb ...
1678s Unpacking python3-cftime (1.6.4-2) ...
1678s Selecting previously unselected package python3-defusedxml.
1678s Preparing to unpack .../244-python3-defusedxml_0.7.1-3_all.deb ...
1678s Unpacking python3-defusedxml (0.7.1-3) ...
1678s Selecting previously unselected package python3-dnspython.
1678s Preparing to unpack .../245-python3-dnspython_2.7.0-1ubuntu1_all.deb ...
1678s Unpacking python3-dnspython (2.7.0-1ubuntu1) ...
1678s Selecting previously unselected package python3-roman.
1678s Preparing to unpack .../246-python3-roman_5.0-1_all.deb ...
1678s Unpacking python3-roman (5.0-1) ...
1678s Selecting previously unselected package python3-docutils.
1678s Preparing to unpack .../247-python3-docutils_0.21.2+dfsg-2_all.deb ...
1678s Unpacking python3-docutils (0.21.2+dfsg-2) ...
1678s Selecting previously unselected package python3-email-validator.
1679s Preparing to unpack .../248-python3-email-validator_2.2.0-1_all.deb ...
1679s Unpacking python3-email-validator (2.2.0-1) ...
1679s Selecting previously unselected package python3-fastjsonschema.
1679s Preparing to unpack .../249-python3-fastjsonschema_2.21.1-1_all.deb ...
1679s Unpacking python3-fastjsonschema (2.21.1-1) ...
1679s Selecting previously unselected package python3-frozendict.
1679s Preparing to unpack .../250-python3-frozendict_2.4.6-1_all.deb ...
1679s Unpacking python3-frozendict (2.4.6-1) ...
1679s Selecting previously unselected package python3-h5py-serial.
1679s Preparing to unpack .../251-python3-h5py-serial_3.13.0-1_amd64.deb ...
1679s Unpacking python3-h5py-serial (3.13.0-1) ...
1679s Selecting previously unselected package python3-h5py.
1679s Preparing to unpack .../252-python3-h5py_3.13.0-1_all.deb ...
1679s Unpacking python3-h5py (3.13.0-1) ...
1679s Selecting previously unselected package python3-imagesize.
1679s Preparing to unpack .../253-python3-imagesize_1.4.1-1_all.deb ...
1679s Unpacking python3-imagesize (1.4.1-1) ...
1679s Selecting previously unselected package python3-iniconfig.
1679s Preparing to unpack .../254-python3-iniconfig_1.1.1-2_all.deb ...
1679s Unpacking python3-iniconfig (1.1.1-2) ...
1679s Selecting previously unselected package python3-joblib.
1679s Preparing to unpack .../255-python3-joblib_1.4.2-3_all.deb ...
1679s Unpacking python3-joblib (1.4.2-3) ...
1679s Selecting previously unselected package python3-traitlets.
1679s Preparing to unpack .../256-python3-traitlets_5.14.3+really5.14.3-1_all.deb ...
1679s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ...
1679s Selecting previously unselected package python3-jupyter-core.
1679s Preparing to unpack .../257-python3-jupyter-core_5.7.2-5_all.deb ...
1679s Unpacking python3-jupyter-core (5.7.2-5) ...
1679s Selecting previously unselected package python3-latexcodec.
1679s Preparing to unpack .../258-python3-latexcodec_3.0.0-1_all.deb ...
1679s Unpacking python3-latexcodec (3.0.0-1) ...
1679s Selecting previously unselected package python3-pytz.
1679s Preparing to unpack .../259-python3-pytz_2025.1-3_all.deb ...
1679s Unpacking python3-pytz (2025.1-3) ...
1679s Selecting previously unselected package python3-tz.
1679s Preparing to unpack .../260-python3-tz_2025.1-3_all.deb ...
1679s Unpacking python3-tz (2025.1-3) ...
1679s Selecting previously unselected package python3-pandas-lib:amd64.
1679s Preparing to unpack .../261-python3-pandas-lib_2.2.3+dfsg-8build1_amd64.deb ...
1679s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8build1) ...
1679s Selecting previously unselected package python3-pandas.
1679s Preparing to unpack .../262-python3-pandas_2.2.3+dfsg-8build1_all.deb ...
1679s Unpacking python3-pandas (2.2.3+dfsg-8build1) ...
1679s Selecting previously unselected package python3-pydantic-core.
1679s Preparing to unpack .../263-python3-pydantic-core_2.27.2-1build1_amd64.deb ...
1679s Unpacking python3-pydantic-core (2.27.2-1build1) ...
1679s Selecting previously unselected package python3-pydantic.
1679s Preparing to unpack .../264-python3-pydantic_2.10.6-1_amd64.deb ...
1679s Unpacking python3-pydantic (2.10.6-1) ...
1679s Selecting previously unselected package python3-tqdm.
1680s Preparing to unpack .../265-python3-tqdm_4.67.1-3_all.deb ...
1680s Unpacking python3-tqdm (4.67.1-3) ...
1680s Selecting previously unselected package python3-ruamel.yaml.clib.
1680s Preparing to unpack .../266-python3-ruamel.yaml.clib_0.2.12+ds-1build1_amd64.deb ...
1680s Unpacking python3-ruamel.yaml.clib (0.2.12+ds-1build1) ...
1680s Selecting previously unselected package python3-ruamel.yaml.
1680s Preparing to unpack .../267-python3-ruamel.yaml_0.18.10+ds-1_all.deb ...
1680s Unpacking python3-ruamel.yaml (0.18.10+ds-1) ...
1680s Selecting previously unselected package python3-monty.
1680s Preparing to unpack .../268-python3-monty_2025.3.3-1_all.deb ...
1680s Unpacking python3-monty (2025.3.3-1) ...
1680s Selecting previously unselected package python3-nbformat.
1680s Preparing to unpack .../269-python3-nbformat_5.9.1-1_all.deb ...
1680s Unpacking python3-nbformat (5.9.1-1) ...
1680s Selecting previously unselected package python3-netcdf4.
1680s Preparing to unpack .../270-python3-netcdf4_1.7.2-1build4_amd64.deb ...
1680s Unpacking python3-netcdf4 (1.7.2-1build4) ...
1680s Selecting previously unselected package python3-networkx.
1680s Preparing to unpack .../271-python3-networkx_3.2.1-4ubuntu1_all.deb ...
1680s Unpacking python3-networkx (3.2.1-4ubuntu1) ...
1680s Selecting previously unselected package python3-openbabel.
1680s Preparing to unpack .../272-python3-openbabel_3.1.1+dfsg-11ubuntu3_amd64.deb ...
1680s Unpacking python3-openbabel (3.1.1+dfsg-11ubuntu3) ...
1680s Selecting previously unselected package python3-palettable.
1680s Preparing to unpack .../273-python3-palettable_3.3.3-1_all.deb ...
1680s Unpacking python3-palettable (3.3.3-1) ...
1680s Selecting previously unselected package python3-phonopy.
1680s Preparing to unpack .../274-python3-phonopy_2.35.0-1_amd64.deb ...
1680s Unpacking python3-phonopy (2.35.0-1) ...
1681s Selecting previously unselected package python3-tenacity.
1681s Preparing to unpack .../275-python3-tenacity_9.0.0-0ubuntu1_all.deb ...
1681s Unpacking python3-tenacity (9.0.0-0ubuntu1) ...
1681s Selecting previously unselected package python3-plotly.
1681s Preparing to unpack .../276-python3-plotly_5.20.0+dfsg-1_all.deb ...
1681s Unpacking python3-plotly (5.20.0+dfsg-1) ...
1682s Selecting previously unselected package python3-pluggy.
1682s Preparing to unpack .../277-python3-pluggy_1.5.0-1_all.deb ...
1682s Unpacking python3-pluggy (1.5.0-1) ...
1682s Selecting previously unselected package python3-pybtex.
1682s Preparing to unpack .../278-python3-pybtex_0.24.0-4_all.deb ...
1682s Unpacking python3-pybtex (0.24.0-4) ...
1682s Selecting previously unselected package python3-tabulate.
1682s Preparing to unpack .../279-python3-tabulate_0.9.0-1_all.deb ...
1682s Unpacking python3-tabulate (0.9.0-1) ...
1682s Selecting previously unselected package python3-uncertainties.
1682s Preparing to unpack .../280-python3-uncertainties_3.2.2-1_all.deb ...
1682s Unpacking python3-uncertainties (3.2.2-1) ...
1682s Selecting previously unselected package python3-pymatgen.
1682s Preparing to unpack .../281-python3-pymatgen_2025.2.18+dfsg1-4_amd64.deb ...
1682s Unpacking python3-pymatgen (2025.2.18+dfsg1-4) ...
1682s Selecting previously unselected package python3-pytest.
1682s Preparing to unpack .../282-python3-pytest_8.3.5-1_all.deb ...
1682s Unpacking python3-pytest (8.3.5-1) ...
1682s Selecting previously unselected package python3-snowballstemmer.
1682s Preparing to unpack .../283-python3-snowballstemmer_2.2.0-4build1_all.deb ...
1682s Unpacking python3-snowballstemmer (2.2.0-4build1) ...
1682s Selecting previously unselected package sphinx-common.
1682s Preparing to unpack .../284-sphinx-common_8.1.3-5_all.deb ...
1682s Unpacking sphinx-common (8.1.3-5) ...
1682s Selecting previously unselected package python3-alabaster.
1682s Preparing to unpack .../285-python3-alabaster_0.7.16-0.1_all.deb ...
1682s Unpacking python3-alabaster (0.7.16-0.1) ...
1682s Selecting previously unselected package python3-sphinx.
1682s Preparing to unpack .../286-python3-sphinx_8.1.3-5_all.deb ...
1682s Unpacking python3-sphinx (8.1.3-5) ...
1682s Selecting previously unselected package python3-sphinxcontrib.jquery.
1682s Preparing to unpack .../287-python3-sphinxcontrib.jquery_4.1-5_all.deb ...
1682s Unpacking python3-sphinxcontrib.jquery (4.1-5) ...
1682s Selecting previously unselected package python3-sphinx-rtd-theme.
1682s Preparing to unpack .../288-python3-sphinx-rtd-theme_3.0.2+dfsg-2_all.deb ...
1682s Unpacking python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
1682s Selecting previously unselected package mpi-default-bin.
1682s Preparing to unpack .../289-mpi-default-bin_1.18_amd64.deb ...
1682s Unpacking mpi-default-bin (1.18) ...
1682s Selecting previously unselected package python3-mpi4py.
1682s Preparing to unpack .../290-python3-mpi4py_4.0.3-3ubuntu1_amd64.deb ...
1682s Unpacking python3-mpi4py (4.0.3-3ubuntu1) ...
1682s Selecting previously unselected package python3-vtk9.
1682s Preparing to unpack .../291-python3-vtk9_9.3.0+dfsg1-4ubuntu1_amd64.deb ...
1682s Unpacking python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ...
1683s Setting up dh-python (6.20250308) ...
1683s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ...
1683s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ...
1683s Setting up liblcms2-2:amd64 (2.16-2) ...
1683s Setting up python3-iniconfig (1.1.1-2) ...
1683s Setting up libtbbmalloc2:amd64 (2022.0.0-2) ...
1683s Setting up libpixman-1-0:amd64 (0.44.0-3) ...
1683s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ...
1683s Setting up libwayland-server0:amd64 (1.23.1-3) ...
1683s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ...
1683s Setting up libpciaccess0:amd64 (0.17-3build1) ...
1683s Setting up libdouble-conversion3:amd64 (3.3.1-1) ...
1683s Setting up fonts-lato (2.015-1) ...
1683s Setting up fonts-mathjax (2.7.9+dfsg-1) ...
1683s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ...
1683s Setting up python3-pydantic-core (2.27.2-1build1) ...
1683s Setting up libogg0:amd64 (1.3.5-3build1) ...
1683s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ...
1683s Setting up proj-data (9.5.1-1) ...
1683s Setting up libjs-mathjax (2.7.9+dfsg-1) ...
1683s Setting up libxcb-xinput0:amd64 (1.17.0-2) ...
1683s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ...
1683s Setting up python3-joblib (1.4.2-3) ...
1683s Setting up python3-lz4 (4.4.0+dfsg-1build1) ...
1684s Setting up libxcb-render0:amd64 (1.17.0-2) ...
1684s Setting up python3-defusedxml (0.7.1-3) ...
1684s Setting up libarchive-zip-perl (1.68-1) ...
1684s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ...
1684s Setting up libglvnd0:amd64 (1.7.0-1build1) ...
1684s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
1684s Setting up python3-alabaster (0.7.16-0.1) ...
1684s Setting up python3-unicodedata2 (15.1.0+ds-1build3) ...
1684s Setting up fonts-lyx (2.4.3-1) ...
1684s Setting up libxcb-glx0:amd64 (1.17.0-2) ...
1684s Setting up python3-tenacity (9.0.0-0ubuntu1) ...
1684s Setting up libdebhelper-perl (13.24.1ubuntu2) ...
1684s Setting up python3-tqdm (4.67.1-3) ...
1684s Setting up libdrm-intel1:amd64 (2.4.124-2) ...
1684s Setting up libxcb-keysyms1:amd64 (0.4.1-1) ...
1684s Setting up libxcb-shape0:amd64 (1.17.0-2) ...
1684s Setting up python3-ruamel.yaml.clib (0.2.12+ds-1build1) ...
1684s Setting up x11-common (1:7.7+23ubuntu4) ...
1684s Setting up python3-frozendict (2.4.6-1) ...
1685s Setting up libibumad3:amd64 (56.0-4ubuntu1) ...
1685s Setting up libdeflate0:amd64 (1.23-2) ...
1685s Setting up python3-tabulate (0.9.0-1) ...
1685s Setting up m4 (1.4.19-7) ...
1685s Setting up python3-latexcodec (3.0.0-1) ...
1685s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ...
1685s Setting up libxcb-render-util0:amd64 (0.3.10-1) ...
1685s Setting up python3-all (3.13.3-1) ...
1685s Setting up python3-pytz (2025.1-3) ...
1685s Setting up libxcb-shm0:amd64 (1.17.0-2) ...
1685s Setting up libibmad5:amd64 (56.0-4ubuntu1) ...
1685s Setting up libxcb-icccm4:amd64 (0.4.2-1) ...
1685s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ...
1685s Setting up python3-networkx (3.2.1-4ubuntu1) ...
1686s Setting up python3-wheel (0.45.1-1) ...
1686s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ...
1686s Setting up python3-annotated-types (0.7.0-1) ...
1686s Setting up libpcre2-16-0:amd64 (10.45-1) ...
1686s Setting up libaec0:amd64 (1.1.3-1) ...
1686s Setting up python3-platformdirs (4.3.6-1) ...
1686s Setting up libopengl0:amd64 (1.7.0-1build1) ...
1686s Setting up python3-tz (2025.1-3) ...
1686s Setting up libxcb-util1:amd64 (0.4.1-1) ...
1686s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ...
1686s Setting up libxcb-xkb1:amd64 (1.17.0-2) ...
1686s Setting up libxcb-image0:amd64 (0.4.0-2build1) ...
1686s Setting up python3-fs (2.4.16-7) ...
1686s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ...
1686s Setting up libxcb-present0:amd64 (1.17.0-2) ...
1686s Setting up unicode-data (15.1.0-1) ...
1686s Setting up libsymspg2:amd64 (2.5.0-2build1) ...
1686s Setting up python3-bson (4.10.1-5build1) ...
1687s Setting up python3-palettable (3.3.3-1) ...
1687s Setting up python3-roman (5.0-1) ...
1687s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ...
1687s Setting up libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1687s Setting up python3-decorator (5.1.1-5) ...
1687s Setting up autotools-dev (20220109.1) ...
1687s Setting up libblas3:amd64 (3.12.1-2) ...
1687s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
1687s Setting up libxcb-xinerama0:amd64 (1.17.0-2) ...
1687s Setting up libmunge2:amd64 (0.5.16-1) ...
1687s Setting up libllvm17t64:amd64 (1:17.0.6-21) ...
1687s Setting up libexpat1-dev:amd64 (2.7.1-1) ...
1687s Setting up python3-pyproject-hooks (1.2.0-1) ...
1687s Setting up libxcb-sync1:amd64 (1.17.0-2) ...
1687s Setting up python3-snowballstemmer (2.2.0-4build1) ...
1687s Setting up libboost-iostreams1.83.0:amd64 (1.83.0-4.2ubuntu1) ...
1687s Setting up libjsoncpp26:amd64 (1.9.6-3) ...
1687s Setting up python3-brotli (1.1.0-2build4) ...
1687s Setting up liblzf1:amd64 (3.6-4) ...
1687s Setting up libquadmath0:amd64 (15-20250404-0ubuntu1) ...
1687s Setting up python3-cycler (0.12.1-1) ...
1688s Setting up libimagequant0:amd64 (2.18.0-1build1) ...
1688s Setting up libxkbcommon-x11-0:amd64 (1.7.0-2) ...
1688s Setting up fonts-dejavu-mono (2.37-8) ...
1688s Setting up python3-kiwisolver (1.4.7-3build1) ...
1688s Setting up libhwloc15:amd64 (2.12.0-1) ...
1688s Setting up libmpc3:amd64 (1.3.1-1build2) ...
1688s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ...
1688s Setting up cython3 (3.0.11+dfsg-2ubuntu2) ...
1689s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ...
1689s Setting up autopoint (0.23.1-1) ...
1689s Setting up fonts-dejavu-core (2.37-8) ...
1689s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ...
1689s Setting up python3-toml (0.10.2-1) ...
1689s Setting up python3-installer (0.7.0+dfsg1-3) ...
1689s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ...
1689s Setting up libvulkan1:amd64 (1.4.304.0-1) ...
1689s Setting up autoconf (2.72-3ubuntu1) ...
1689s Setting up python3-pluggy (1.5.0-1) ...
1689s Setting up libwebp7:amd64 (1.5.0-0.1) ...
1689s Setting up python3-pybtex (0.24.0-4) ...
1689s Setting up libubsan1:amd64 (15-20250404-0ubuntu1) ...
1689s Setting up python3-fastjsonschema (2.21.1-1) ...
1689s Setting up python3-ruamel.yaml (0.18.10+ds-1) ...
1690s Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
1690s Setting up dwz (0.15-1build6) ...
1690s Setting up libmtdev1t64:amd64 (1.1.7-1) ...
1690s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ...
1690s Setting up libxshmfence1:amd64 (1.3.3-1) ...
1690s Setting up libhwasan0:amd64 (15-20250404-0ubuntu1) ...
1690s Setting up python3-dnspython (2.7.0-1ubuntu1) ...
1690s Setting up libxcb-randr0:amd64 (1.17.0-2) ...
1690s Setting up python3-traitlets (5.14.3+really5.14.3-1) ...
1690s Setting up libasan8:amd64 (15-20250404-0ubuntu1) ...
1690s Setting up libjson-perl (4.10000-1) ...
1690s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ...
1690s Setting up libpsm2-2 (11.2.185-2.1) ...
1690s Setting up openmpi-common (5.0.7-1) ...
1690s Setting up debugedit (1:5.1-2) ...
1690s Setting up libmd4c0:amd64 (0.5.2-2) ...
1690s Setting up librdmacm1t64:amd64 (56.0-4ubuntu1) ...
1690s Setting up libopenjp2-7:amd64 (2.5.3-2) ...
1690s Setting up libharfbuzz0b:amd64 (10.2.0-1) ...
1690s Setting up python3-email-validator (2.2.0-1) ...
1690s Setting up sgml-base (1.31) ...
1690s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ...
1690s Setting up libxss1:amd64 (1:1.2.3-1build3) ...
1690s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.4) ...
1690s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
1690s Setting up libtsan2:amd64 (15-20250404-0ubuntu1) ...
1690s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
1690s Setting up python3-mpmath (1.3.0-1) ...
1691s Setting up libisl23:amd64 (0.27-1) ...
1691s Setting up python3-build (1.2.2-1) ...
1691s Setting up python-matplotlib-data (3.10.1+dfsg1-3) ...
1691s Setting up libwebpmux3:amd64 (1.5.0-0.1) ...
1691s Setting up libinchi1.07 (1.07.3+dfsg-1) ...
1691s Setting up python3-soupsieve (2.7-1) ...
1691s Setting up pymatgen-test-files (2025.2.18-1) ...
1691s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
1691s Setting up sphinx-rtd-theme-common (3.0.2+dfsg-2) ...
1691s Setting up libcc1-0:amd64 (15-20250404-0ubuntu1) ...
1691s Setting up python3-jupyter-core (5.7.2-5) ...
1691s Setting up liblsan0:amd64 (15-20250404-0ubuntu1) ...
1691s Setting up libhsakmt1:amd64 (5.7.0-1build1) ...
1691s Setting up libsz2:amd64 (1.1.3-1) ...
1691s Setting up libjs-bootstrap (3.4.1+dfsg-3) ...
1691s Setting up libitm1:amd64 (15-20250404-0ubuntu1) ...
1691s Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
1691s Setting up python3-imagesize (1.4.1-1) ...
1691s Setting up libwacom-common (2.14.0-1) ...
1691s Setting up libwayland-client0:amd64 (1.23.1-3) ...
1691s Setting up libjpeg8:amd64 (8c-2ubuntu11) ...
1691s Setting up automake (1:1.17-3ubuntu1) ...
1691s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
1691s Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
1691s Setting up libfabric1:amd64 (1.17.0-3.1) ...
1691s Setting up python3-sympy (1.13.3-5) ...
1696s Setting up libice6:amd64 (2:1.1.1-1) ...
1696s Setting up mesa-libgallium:amd64 (25.0.3-1ubuntu2) ...
1696s Setting up liblapack3:amd64 (3.12.1-2) ...
1696s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
1696s Setting up libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1696s Setting up gettext (0.23.1-1) ...
1696s Setting up libgbm1:amd64 (25.0.3-1ubuntu2) ...
1696s Setting up libwacom9:amd64 (2.14.0-1) ...
1696s Setting up pybuild-plugin-pyproject (6.20250308) ...
1696s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ...
1696s Setting up python3-pytest (8.3.5-1) ...
1697s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ...
1697s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ...
1697s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1697s Setting up python3-nbformat (5.9.1-1) ...
1697s Setting up libhwloc-plugins:amd64 (2.12.0-1) ...
1697s Setting up python3-bs4 (4.13.3-2) ...
1697s Setting up libinput-bin (1.27.1-1) ...
1697s Setting up libtbbbind-2-5:amd64 (2022.0.0-2) ...
1697s Setting up intltool-debian (0.35.0+20060710.6) ...
1697s Setting up libmaeparser1:amd64 (1.3.1-1build1) ...
1697s Setting up libegl-mesa0:amd64 (25.0.3-1ubuntu2) ...
1697s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
1697s Setting up packmol (1:20.15.3-1) ...
1697s Setting up python3-pydantic (2.10.6-1) ...
1697s Setting up libraqm0:amd64 (0.10.2-1) ...
1697s Setting up libpython3.13-dev:amd64 (3.13.3-1) ...
1697s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
1697s Setting up libpmix2t64:amd64 (5.0.6-5) ...
1697s Setting up python3-plotly (5.20.0+dfsg-1) ...
1703s Setting up python3-numpy (1:2.2.3+ds-5) ...
1705s Setting up libjs-sphinxdoc (8.1.3-5) ...
1705s Setting up cpp-14 (14.2.0-19ubuntu2) ...
1705s Setting up dh-strip-nondeterminism (1.14.1-2) ...
1705s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ...
1705s Setting up python3-lxml:amd64 (5.3.2-1) ...
1705s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ...
1705s Setting up libhsa-runtime64-1 (5.7.1-2build1) ...
1705s Setting up xml-core (0.19) ...
1705s Setting up libegl1:amd64 (1.7.0-1build1) ...
1705s Setting up python3-contourpy (1.3.1-1build1) ...
1705s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ...
1705s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ...
1705s Setting up python3-spglib (2.5.0-2build1) ...
1705s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ...
1705s Setting up libsm6:amd64 (2:1.2.4-1) ...
1705s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ...
1705s Setting up python3-uncertainties (3.2.2-1) ...
1705s Setting up cpp-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1705s Setting up libinput10:amd64 (1.27.1-1) ...
1705s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ...
1705s Setting up fontconfig (2.15.0-2.2ubuntu1) ...
1707s Regenerating fonts cache... done.
1707s Setting up libxft2:amd64 (2.3.6-1build1) ...
1707s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ...
1707s Setting up python3-scipy (1.14.1-4ubuntu2) ...
1710s Setting up libpython3-dev:amd64 (3.13.3-1) ...
1710s Setting up libglx0:amd64 (1.7.0-1build1) ...
1710s Setting up libproj25:amd64 (9.5.1-1) ...
1710s Setting up python3.13-dev (3.13.3-1) ...
1710s Setting up po-debconf (1.0.21+nmu1) ...
1710s Setting up libtk8.6:amd64 (8.6.16-1) ...
1710s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8build1) ...
1710s Setting up libnetcdf22:amd64 (1:4.9.3-1) ...
1710s Setting up python3-h5py-serial (3.13.0-1) ...
1710s Setting up libtbb12:amd64 (2022.0.0-2) ...
1710s Setting up python-pymatgen-doc (2025.2.18+dfsg1-4) ...
1710s Setting up libcairo2:amd64 (1.18.4-1) ...
1710s Setting up python3.13-tk (3.13.3-1) ...
1710s Setting up python3-pil:amd64 (11.1.0-5build1) ...
1711s Setting up libgl1:amd64 (1.7.0-1build1) ...
1711s Setting up python3-pandas (2.2.3+dfsg-8build1) ...
1715s Setting up libamdhip64-5 (5.7.1-5.1) ...
1715s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ...
1715s Setting up libpython3-all-dev:amd64 (3.13.3-1) ...
1715s Setting up sphinx-common (8.1.3-5) ...
1715s Setting up python3-dev (3.13.3-1) ...
1715s Setting up python3-h5py (3.13.0-1) ...
1715s Setting up python3-cftime (1.6.4-2) ...
1715s Setting up libglew2.2:amd64 (2.2.0-4build1) ...
1715s Setting up cpp (4:14.2.0-1ubuntu1) ...
1715s Setting up python3-monty (2025.3.3-1) ...
1715s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
1715s Setting up python3-netcdf4 (1.7.2-1build4) ...
1715s Setting up python3-all-dev (3.13.3-1) ...
1715s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ...
1715s Setting up libucx0:amd64 (1.18.1+ds-2) ...
1715s Setting up gcc-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1715s Setting up blt (2.5.3+dfsg-8) ...
1715s Setting up libopenbabel7 (3.1.1+dfsg-11ubuntu3) ...
1715s Setting up python3-tk:amd64 (3.13.3-1) ...
1715s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ...
1715s Setting up gcc-14 (14.2.0-19ubuntu2) ...
1715s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1715s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ...
1715s Setting up g++-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ...
1715s Setting up g++-x86-64-linux-gnu (4:14.2.0-1ubuntu1) ...
1715s Setting up g++-14 (14.2.0-19ubuntu2) ...
1715s Setting up libopenmpi40:amd64 (5.0.7-1) ...
1715s Setting up python3-openbabel (3.1.1+dfsg-11ubuntu3) ...
1715s Setting up libtool (2.5.4-4) ...
1715s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ...
1715s Setting up gcc (4:14.2.0-1ubuntu1) ...
1715s Setting up dh-autoreconf (20) ...
1715s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ...
1715s Setting up g++ (4:14.2.0-1ubuntu1) ...
1715s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
1715s Setting up build-essential (12.12ubuntu1) ...
1715s Setting up openmpi-bin (5.0.7-1) ...
1715s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
1715s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist
1715s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
1715s Setting up libvtk9.3-qt:amd64 (9.3.0+dfsg1-4ubuntu1) ...
1715s Setting up mpi-default-bin (1.18) ...
1715s Setting up debhelper (13.24.1ubuntu2) ...
1715s Setting up python3-mpi4py (4.0.3-3ubuntu1) ...
1716s Setting up python3-vtk9 (9.3.0+dfsg1-4ubuntu1) ...
1716s /usr/lib/python3/dist-packages/vtkmodules/util/vtkMethodParser.py:304: SyntaxWarning: invalid escape sequence '\S'
1716s   patn = re.compile ("  \S")
1716s Setting up python3-fonttools (4.55.3-2build1) ...
1716s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ...
1716s Setting up python3-matplotlib (3.10.1+dfsg1-3) ...
1718s Setting up python3-ase (3.24.0-1) ...
1719s Setting up python3-phonopy (2.35.0-1) ...
1719s Setting up python3-pymatgen (2025.2.18+dfsg1-4) ...
1720s Processing triggers for libc-bin (2.41-6ubuntu1) ...
1721s Processing triggers for man-db (2.13.0-1) ...
1722s Processing triggers for udev (257.4-1ubuntu3) ...
1723s Processing triggers for install-info (7.1.1-1) ...
1723s Processing triggers for sgml-base (1.31) ...
1723s Setting up docutils-common (0.21.2+dfsg-2) ...
1723s Processing triggers for sgml-base (1.31) ...
1723s Setting up python3-docutils (0.21.2+dfsg-2) ...
1723s Setting up python3-sphinx (8.1.3-5) ...
1724s Setting up python3-sphinxcontrib.jquery (4.1-5) ...
1724s Setting up python3-sphinx-rtd-theme (3.0.2+dfsg-2) ...
1730s autopkgtest [19:29:59]: test test-pymatgen-net: [-----------------------
1731s running network tests with NET_TEST_LIST=test_get_structure_by_id
1731s ============================= test session starts ==============================
1731s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13
1731s cachedir: .pytest_cache
1731s rootdir: /tmp/autopkgtest.U7k0BG/build.dCF/src
1731s configfile: pyproject.toml
1731s plugins: typeguard-4.4.2
1751s collecting ... collected 3117 items / 3116 deselected / 7 skipped / 1 selected
1751s 
1751s tests/ext/test_cod.py::TestCOD::test_get_structure_by_id PASSED          [100%]
1751s 
1751s ============================= slowest 30 durations =============================
1751s 0.59s call     tests/ext/test_cod.py::TestCOD::test_get_structure_by_id
1751s 
1751s (2 durations < 0.005s hidden.  Use -vv to show these durations.)
1751s =========================== short test summary info ============================
1751s SKIPPED [1] tests/electronic_structure/test_boltztrap2.py:27: No boltztrap2
1751s SKIPPED [1] tests/ext/test_matproj.py:44: MP API is down
1751s SKIPPED [1] tests/io/test_openff.py:25: could not import 'openff.toolkit': No module named 'openff'
1751s SKIPPED [1] tests/io/test_shengbte.py:10: could not import 'f90nml': No module named 'f90nml'
1752s SKIPPED [1] tests/io/test_zeopp.py:20: zeo not installed
1752s SKIPPED [1] tests/performance/test_import_time.py:32: ref time only comparable in CI runner
1752s SKIPPED [1] tests/symmetry/test_kpath_hin.py:11: seekpath not installed
1752s ================ 1 passed, 7 skipped, 3116 deselected in 20.61s ================
1753s autopkgtest [19:30:22]: test test-pymatgen-net: -----------------------]
1753s autopkgtest [19:30:22]: test test-pymatgen-net:  - - - - - - - - - - results - - - - - - - - - -
1753s test-pymatgen-net    PASS
1754s autopkgtest [19:30:23]: @@@@@@@@@@@@@@@@@@@@ summary
1754s test-pymatgen        PASS
1754s test-pymatgen-net    PASS
1771s nova [W] Skipping flock for amd64
1771s Creating nova instance adt-questing-amd64-pymatgen-20250503-182606-juju-7f2275-prod-proposed-migration-environment-15-2e08e505-609a-4d55-89c9-aec25e8ffc06 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)...
1771s nova [W] Timed out waiting for 6a35f8c5-64ab-485b-87c5-4d4b2960df63 to get deleted.
1771s nova [W] Skipping flock for amd64
1771s Creating nova instance adt-questing-amd64-pymatgen-20250503-182606-juju-7f2275-prod-proposed-migration-environment-15-2e08e505-609a-4d55-89c9-aec25e8ffc06 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)...
1771s nova [W] Timed out waiting for 116a190b-ba23-4e5b-bb45-68fb8e214459 to get deleted.