0s autopkgtest [18:45:13]: starting date and time: 2025-05-03 18:45:13+0000 0s autopkgtest [18:45:13]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [18:45:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7nghk8lc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:mpich --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=mpich/4.3.0-5 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@sto01-9.secgroup --name adt-questing-amd64-lammps-20250503-184513-juju-7f2275-prod-proposed-migration-environment-2-b49aec35-cc6f-4e09-b903-2c55de29dc85 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 199s autopkgtest [18:48:32]: testbed dpkg architecture: amd64 200s autopkgtest [18:48:33]: testbed apt version: 3.0.0 200s autopkgtest [18:48:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 200s autopkgtest [18:48:33]: testbed release detected to be: None 201s autopkgtest [18:48:34]: updating testbed package index (apt update) 201s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 201s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 201s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 201s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 201s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 201s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [149 kB] 201s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1442 kB] 201s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [203 kB] 201s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [146 kB] 201s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [576 kB] 201s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1424 kB] 201s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 201s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.6 kB] 201s Fetched 4155 kB in 1s (5955 kB/s) 202s Reading package lists... 203s autopkgtest [18:48:36]: upgrading testbed (apt dist-upgrade and autopurge) 203s Reading package lists... 203s Building dependency tree... 203s Reading state information... 203s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 204s Entering ResolveByKeep 204s 204s Calculating upgrade... 204s The following packages will be upgraded: 204s libperl5.40 libsepol2 perl perl-base perl-modules-5.40 204s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 204s Need to get 10.5 MB of archives. 204s After this operation, 8192 B of additional disk space will be used. 204s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 204s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl amd64 5.40.1-3 [262 kB] 204s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 204s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 204s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 205s Fetched 10.5 MB in 1s (19.8 MB/s) 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 205s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 205s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 205s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 205s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 205s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 205s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 205s Setting up perl-base (5.40.1-3) ... 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 205s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 205s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 206s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 206s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 206s Setting up libsepol2:amd64 (3.8.1-1) ... 206s Setting up perl-modules-5.40 (5.40.1-3) ... 206s Setting up libperl5.40:amd64 (5.40.1-3) ... 206s Setting up perl (5.40.1-3) ... 206s Processing triggers for man-db (2.13.0-1) ... 206s Processing triggers for libc-bin (2.41-6ubuntu1) ... 206s Reading package lists... 207s Building dependency tree... 207s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 207s Starting 2 pkgProblemResolver with broken count: 0 207s Done 207s Solving dependencies... 207s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 209s autopkgtest [18:48:42]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 209s autopkgtest [18:48:42]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 215s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 215s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 215s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 215s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 215s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 215s gpgv: Can't check signature: No public key 215s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 219s autopkgtest [18:48:52]: testing package lammps version 20240207+dfsg-3build3 220s autopkgtest [18:48:53]: build not needed 242s autopkgtest [18:49:15]: test crack: preparing testbed 242s Reading package lists... 242s Building dependency tree... 242s Reading state information... 242s Starting pkgProblemResolver with broken count: 0 242s Starting 2 pkgProblemResolver with broken count: 0 242s Done 243s The following NEW packages will be installed: 243s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 243s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 243s libdouble-conversion3 libdrm-intel1 libevent-pthreads-2.1-7t64 libfabric1 243s libfftw3-double3 libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri 243s libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 243s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 243s libibmad5 libibumad3 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 243s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmunge2 243s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 243s libpmix2t64 libpnetcdf6 libproj25 libpsm-infinipath1 libpsm2-2 librdmacm1t64 243s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 243s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libucx0 libvoro++1 libvtk9.3 243s libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 243s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 243s libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 243s libxxf86vm1 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 openmpi-bin 243s openmpi-common proj-data x11-common 243s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 243s Need to get 139 MB of archives. 243s After this operation, 607 MB of additional disk space will be used. 243s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 243s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 243s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 243s Get:4 http://ftpmaster.internal/ubuntu questing/universe amd64 lammps-data all 20240207+dfsg-3build3 [9732 kB] 243s Get:5 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 243s Get:6 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 244s Get:7 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 244s Get:8 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 244s Get:9 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 244s Get:10 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 244s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 244s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 244s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 244s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 244s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 244s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 244s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 244s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 244s Get:19 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 244s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 244s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 244s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 244s Get:23 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 244s Get:24 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 244s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 244s Get:26 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 244s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 244s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 244s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 244s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 244s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 244s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 244s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 244s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 244s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 244s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 244s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 244s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 244s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 244s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 244s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 244s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 244s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 244s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 244s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 244s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 244s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 244s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 244s Get:49 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 244s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 244s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 244s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 244s Get:53 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 244s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 244s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 244s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 244s Get:57 http://ftpmaster.internal/ubuntu questing/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 244s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 244s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 244s Get:60 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 244s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 244s Get:62 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 244s Get:63 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 245s Get:64 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB] 245s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 245s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 245s Get:67 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 245s Get:68 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 245s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 245s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 245s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 245s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 245s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB] 245s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 245s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 245s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 245s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 245s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 245s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 245s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 245s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 245s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 245s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 245s Get:84 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 245s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 245s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 245s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 245s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 245s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 245s Get:90 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB] 245s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 liblammps0t64 amd64 20240207+dfsg-3build3 [8393 kB] 245s Get:92 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 245s Get:93 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 245s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 246s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 lammps amd64 20240207+dfsg-3build3 [15.4 kB] 246s Fetched 139 MB in 3s (48.3 MB/s) 246s Selecting previously unselected package fonts-dejavu-mono. 246s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 246s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 246s Unpacking fonts-dejavu-mono (2.37-8) ... 246s Selecting previously unselected package fonts-dejavu-core. 246s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 246s Unpacking fonts-dejavu-core (2.37-8) ... 246s Selecting previously unselected package fontconfig-config. 246s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 246s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 246s Selecting previously unselected package lammps-data. 246s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 246s Unpacking lammps-data (20240207+dfsg-3build3) ... 246s Selecting previously unselected package libaec0:amd64. 246s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 246s Unpacking libaec0:amd64 (1.1.3-1) ... 246s Selecting previously unselected package libllvm17t64:amd64. 246s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-21_amd64.deb ... 246s Unpacking libllvm17t64:amd64 (1:17.0.6-21) ... 247s Selecting previously unselected package libamd-comgr2:amd64. 247s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 247s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 247s Selecting previously unselected package libhsakmt1:amd64. 247s Preparing to unpack .../07-libhsakmt1_5.7.0-1build1_amd64.deb ... 247s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 247s Selecting previously unselected package libhsa-runtime64-1. 247s Preparing to unpack .../08-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 247s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 247s Selecting previously unselected package libamdhip64-5. 247s Preparing to unpack .../09-libamdhip64-5_5.7.1-5.1_amd64.deb ... 247s Unpacking libamdhip64-5 (5.7.1-5.1) ... 247s Selecting previously unselected package libblas3:amd64. 247s Preparing to unpack .../10-libblas3_3.12.1-2_amd64.deb ... 247s Unpacking libblas3:amd64 (3.12.1-2) ... 247s Selecting previously unselected package libfontconfig1:amd64. 247s Preparing to unpack .../11-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 247s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 247s Selecting previously unselected package libpixman-1-0:amd64. 247s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_amd64.deb ... 247s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 247s Selecting previously unselected package libxcb-render0:amd64. 247s Preparing to unpack .../13-libxcb-render0_1.17.0-2_amd64.deb ... 247s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 247s Selecting previously unselected package libxcb-shm0:amd64. 247s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_amd64.deb ... 247s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 247s Selecting previously unselected package libxrender1:amd64. 247s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 247s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 247s Selecting previously unselected package libcairo2:amd64. 247s Preparing to unpack .../16-libcairo2_1.18.4-1_amd64.deb ... 247s Unpacking libcairo2:amd64 (1.18.4-1) ... 247s Selecting previously unselected package libdeflate0:amd64. 247s Preparing to unpack .../17-libdeflate0_1.23-2_amd64.deb ... 247s Unpacking libdeflate0:amd64 (1.23-2) ... 247s Selecting previously unselected package libdouble-conversion3:amd64. 247s Preparing to unpack .../18-libdouble-conversion3_3.3.1-1_amd64.deb ... 247s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ... 247s Selecting previously unselected package libpciaccess0:amd64. 247s Preparing to unpack .../19-libpciaccess0_0.17-3build1_amd64.deb ... 247s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 247s Selecting previously unselected package libdrm-intel1:amd64. 247s Preparing to unpack .../20-libdrm-intel1_2.4.124-2_amd64.deb ... 247s Unpacking libdrm-intel1:amd64 (2.4.124-2) ... 247s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 247s Preparing to unpack .../21-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 247s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 247s Selecting previously unselected package libpsm-infinipath1. 247s Preparing to unpack .../22-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ... 247s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 247s Selecting previously unselected package libpsm2-2. 247s Preparing to unpack .../23-libpsm2-2_11.2.185-2.1_amd64.deb ... 247s Unpacking libpsm2-2 (11.2.185-2.1) ... 247s Selecting previously unselected package librdmacm1t64:amd64. 247s Preparing to unpack .../24-librdmacm1t64_56.0-4ubuntu1_amd64.deb ... 247s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ... 247s Selecting previously unselected package libfabric1:amd64. 247s Preparing to unpack .../25-libfabric1_1.17.0-3.1_amd64.deb ... 247s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 248s Selecting previously unselected package libgomp1:amd64. 248s Preparing to unpack .../26-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 248s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 248s Selecting previously unselected package libfftw3-double3:amd64. 248s Preparing to unpack .../27-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 248s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 248s Selecting previously unselected package libwayland-server0:amd64. 248s Preparing to unpack .../28-libwayland-server0_1.23.1-3_amd64.deb ... 248s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 248s Selecting previously unselected package libx11-xcb1:amd64. 248s Preparing to unpack .../29-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 248s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 248s Selecting previously unselected package libxcb-dri3-0:amd64. 248s Preparing to unpack .../30-libxcb-dri3-0_1.17.0-2_amd64.deb ... 248s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 248s Selecting previously unselected package libxcb-present0:amd64. 248s Preparing to unpack .../31-libxcb-present0_1.17.0-2_amd64.deb ... 248s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 248s Selecting previously unselected package libxcb-randr0:amd64. 248s Preparing to unpack .../32-libxcb-randr0_1.17.0-2_amd64.deb ... 248s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 248s Selecting previously unselected package libxcb-sync1:amd64. 248s Preparing to unpack .../33-libxcb-sync1_1.17.0-2_amd64.deb ... 248s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 248s Selecting previously unselected package libxcb-xfixes0:amd64. 248s Preparing to unpack .../34-libxcb-xfixes0_1.17.0-2_amd64.deb ... 248s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 248s Selecting previously unselected package libxshmfence1:amd64. 248s Preparing to unpack .../35-libxshmfence1_1.3.3-1_amd64.deb ... 248s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 248s Selecting previously unselected package mesa-libgallium:amd64. 248s Preparing to unpack .../36-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ... 248s Unpacking mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 248s Selecting previously unselected package libgbm1:amd64. 248s Preparing to unpack .../37-libgbm1_25.0.3-1ubuntu2_amd64.deb ... 248s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ... 248s Selecting previously unselected package libgfortran5:amd64. 248s Preparing to unpack .../38-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 248s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 248s Selecting previously unselected package libvulkan1:amd64. 248s Preparing to unpack .../39-libvulkan1_1.4.304.0-1_amd64.deb ... 248s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 248s Selecting previously unselected package libgl1-mesa-dri:amd64. 248s Preparing to unpack .../40-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ... 248s Unpacking libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 248s Selecting previously unselected package libglvnd0:amd64. 248s Preparing to unpack .../41-libglvnd0_1.7.0-1build1_amd64.deb ... 248s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 248s Selecting previously unselected package libxcb-glx0:amd64. 248s Preparing to unpack .../42-libxcb-glx0_1.17.0-2_amd64.deb ... 248s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 248s Selecting previously unselected package libxxf86vm1:amd64. 248s Preparing to unpack .../43-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 248s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 248s Selecting previously unselected package libglx-mesa0:amd64. 248s Preparing to unpack .../44-libglx-mesa0_25.0.3-1ubuntu2_amd64.deb ... 248s Unpacking libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 248s Selecting previously unselected package libglx0:amd64. 248s Preparing to unpack .../45-libglx0_1.7.0-1build1_amd64.deb ... 248s Unpacking libglx0:amd64 (1.7.0-1build1) ... 248s Selecting previously unselected package libgl1:amd64. 248s Preparing to unpack .../46-libgl1_1.7.0-1build1_amd64.deb ... 248s Unpacking libgl1:amd64 (1.7.0-1build1) ... 248s Selecting previously unselected package libgl2ps1.4. 248s Preparing to unpack .../47-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 248s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 248s Selecting previously unselected package libglew2.2:amd64. 248s Preparing to unpack .../48-libglew2.2_2.2.0-4build1_amd64.deb ... 248s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 248s Selecting previously unselected package libsz2:amd64. 248s Preparing to unpack .../49-libsz2_1.1.3-1_amd64.deb ... 248s Unpacking libsz2:amd64 (1.1.3-1) ... 248s Selecting previously unselected package libhdf5-310:amd64. 248s Preparing to unpack .../50-libhdf5-310_1.14.5+repack-3_amd64.deb ... 248s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 248s Selecting previously unselected package libhdf5-hl-310:amd64. 248s Preparing to unpack .../51-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 248s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 248s Selecting previously unselected package libhwloc15:amd64. 248s Preparing to unpack .../52-libhwloc15_2.12.0-1_amd64.deb ... 248s Unpacking libhwloc15:amd64 (2.12.0-1) ... 248s Selecting previously unselected package libjpeg-turbo8:amd64. 248s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 248s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 248s Selecting previously unselected package libjpeg8:amd64. 248s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_amd64.deb ... 248s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 248s Selecting previously unselected package libjsoncpp26:amd64. 248s Preparing to unpack .../55-libjsoncpp26_1.9.6-3_amd64.deb ... 248s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 248s Selecting previously unselected package libkim-api2:amd64. 248s Preparing to unpack .../56-libkim-api2_2.3.0-1ubuntu1_amd64.deb ... 248s Unpacking libkim-api2:amd64 (2.3.0-1ubuntu1) ... 248s Selecting previously unselected package liblapack3:amd64. 248s Preparing to unpack .../57-liblapack3_3.12.1-2_amd64.deb ... 248s Unpacking liblapack3:amd64 (3.12.1-2) ... 249s Selecting previously unselected package libnetcdf22:amd64. 249s Preparing to unpack .../58-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 249s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 249s Selecting previously unselected package libmunge2:amd64. 249s Preparing to unpack .../59-libmunge2_0.5.16-1_amd64.deb ... 249s Unpacking libmunge2:amd64 (0.5.16-1) ... 249s Selecting previously unselected package libxnvctrl0:amd64. 249s Preparing to unpack .../60-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 249s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 249s Selecting previously unselected package ocl-icd-libopencl1:amd64. 249s Preparing to unpack .../61-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 249s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 249s Selecting previously unselected package libhwloc-plugins:amd64. 249s Preparing to unpack .../62-libhwloc-plugins_2.12.0-1_amd64.deb ... 249s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ... 249s Selecting previously unselected package libpmix2t64:amd64. 249s Preparing to unpack .../63-libpmix2t64_5.0.6-5_amd64.deb ... 249s Unpacking libpmix2t64:amd64 (5.0.6-5) ... 249s Selecting previously unselected package libibumad3:amd64. 249s Preparing to unpack .../64-libibumad3_56.0-4ubuntu1_amd64.deb ... 249s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ... 249s Selecting previously unselected package libibmad5:amd64. 249s Preparing to unpack .../65-libibmad5_56.0-4ubuntu1_amd64.deb ... 249s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ... 249s Selecting previously unselected package libucx0:amd64. 249s Preparing to unpack .../66-libucx0_1.18.1+ds-2_amd64.deb ... 249s Unpacking libucx0:amd64 (1.18.1+ds-2) ... 249s Selecting previously unselected package libopenmpi40:amd64. 249s Preparing to unpack .../67-libopenmpi40_5.0.7-1_amd64.deb ... 249s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 249s Selecting previously unselected package libpnetcdf6:amd64. 249s Preparing to unpack .../68-libpnetcdf6_1.14.0-2_amd64.deb ... 249s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 249s Selecting previously unselected package libvoro++1. 249s Preparing to unpack .../69-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 249s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 249s Selecting previously unselected package libogg0:amd64. 249s Preparing to unpack .../70-libogg0_1.3.5-3build1_amd64.deb ... 249s Unpacking libogg0:amd64 (1.3.5-3build1) ... 249s Selecting previously unselected package libopengl0:amd64. 249s Preparing to unpack .../71-libopengl0_1.7.0-1build1_amd64.deb ... 249s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 249s Selecting previously unselected package proj-data. 249s Preparing to unpack .../72-proj-data_9.5.1-1_all.deb ... 249s Unpacking proj-data (9.5.1-1) ... 249s Selecting previously unselected package libjbig0:amd64. 249s Preparing to unpack .../73-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 249s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 249s Selecting previously unselected package liblerc4:amd64. 249s Preparing to unpack .../74-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 249s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 249s Selecting previously unselected package libsharpyuv0:amd64. 249s Preparing to unpack .../75-libsharpyuv0_1.5.0-0.1_amd64.deb ... 249s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 249s Selecting previously unselected package libwebp7:amd64. 249s Preparing to unpack .../76-libwebp7_1.5.0-0.1_amd64.deb ... 249s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 249s Selecting previously unselected package libtiff6:amd64. 249s Preparing to unpack .../77-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 249s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 249s Selecting previously unselected package libproj25:amd64. 249s Preparing to unpack .../78-libproj25_9.5.1-1_amd64.deb ... 249s Unpacking libproj25:amd64 (9.5.1-1) ... 249s Selecting previously unselected package libtbbbind-2-5:amd64. 249s Preparing to unpack .../79-libtbbbind-2-5_2022.0.0-2_amd64.deb ... 249s Unpacking libtbbbind-2-5:amd64 (2022.0.0-2) ... 249s Selecting previously unselected package libtbbmalloc2:amd64. 249s Preparing to unpack .../80-libtbbmalloc2_2022.0.0-2_amd64.deb ... 249s Unpacking libtbbmalloc2:amd64 (2022.0.0-2) ... 249s Selecting previously unselected package libtbb12:amd64. 249s Preparing to unpack .../81-libtbb12_2022.0.0-2_amd64.deb ... 249s Unpacking libtbb12:amd64 (2022.0.0-2) ... 249s Selecting previously unselected package libtcl8.6:amd64. 249s Preparing to unpack .../82-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 249s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 249s Selecting previously unselected package libtheoradec1:amd64. 249s Preparing to unpack .../83-libtheoradec1_1.2.0~alpha1+dfsg-6_amd64.deb ... 249s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 249s Selecting previously unselected package libtheoraenc1:amd64. 249s Preparing to unpack .../84-libtheoraenc1_1.2.0~alpha1+dfsg-6_amd64.deb ... 249s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 249s Selecting previously unselected package libxft2:amd64. 249s Preparing to unpack .../85-libxft2_2.3.6-1build1_amd64.deb ... 249s Unpacking libxft2:amd64 (2.3.6-1build1) ... 249s Selecting previously unselected package x11-common. 249s Preparing to unpack .../86-x11-common_1%3a7.7+23ubuntu4_all.deb ... 249s Unpacking x11-common (1:7.7+23ubuntu4) ... 249s Selecting previously unselected package libxss1:amd64. 249s Preparing to unpack .../87-libxss1_1%3a1.2.3-1build3_amd64.deb ... 249s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 249s Selecting previously unselected package libtk8.6:amd64. 249s Preparing to unpack .../88-libtk8.6_8.6.16-1_amd64.deb ... 249s Unpacking libtk8.6:amd64 (8.6.16-1) ... 249s Selecting previously unselected package libvtk9.3:amd64. 249s Preparing to unpack .../89-libvtk9.3_9.3.0+dfsg1-4ubuntu1_amd64.deb ... 249s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 250s Selecting previously unselected package liblammps0t64:amd64. 250s Preparing to unpack .../90-liblammps0t64_20240207+dfsg-3build3_amd64.deb ... 250s Unpacking liblammps0t64:amd64 (20240207+dfsg-3build3) ... 250s Selecting previously unselected package openmpi-common. 250s Preparing to unpack .../91-openmpi-common_5.0.7-1_all.deb ... 250s Unpacking openmpi-common (5.0.7-1) ... 250s Selecting previously unselected package openmpi-bin. 250s Preparing to unpack .../92-openmpi-bin_5.0.7-1_amd64.deb ... 250s Unpacking openmpi-bin (5.0.7-1) ... 250s Selecting previously unselected package mpi-default-bin. 250s Preparing to unpack .../93-mpi-default-bin_1.18_amd64.deb ... 250s Unpacking mpi-default-bin (1.18) ... 250s Selecting previously unselected package lammps. 250s Preparing to unpack .../94-lammps_20240207+dfsg-3build3_amd64.deb ... 250s Unpacking lammps (20240207+dfsg-3build3) ... 250s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 250s Setting up libtbbmalloc2:amd64 (2022.0.0-2) ... 250s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 250s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 250s Setting up libwayland-server0:amd64 (1.23.1-3) ... 250s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 250s Setting up libpciaccess0:amd64 (0.17-3build1) ... 250s Setting up libdouble-conversion3:amd64 (3.3.1-1) ... 250s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 250s Setting up libogg0:amd64 (1.3.5-3build1) ... 250s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 250s Setting up proj-data (9.5.1-1) ... 250s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 250s Setting up lammps-data (20240207+dfsg-3build3) ... 250s Setting up libxcb-render0:amd64 (1.17.0-2) ... 250s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 250s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 250s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 250s Setting up libdrm-intel1:amd64 (2.4.124-2) ... 250s Setting up x11-common (1:7.7+23ubuntu4) ... 250s Setting up libibumad3:amd64 (56.0-4ubuntu1) ... 250s Setting up libdeflate0:amd64 (1.23-2) ... 250s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 250s Setting up libibmad5:amd64 (56.0-4ubuntu1) ... 250s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 250s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 250s Setting up libaec0:amd64 (1.1.3-1) ... 250s Setting up libopengl0:amd64 (1.7.0-1build1) ... 250s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 250s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 250s Setting up libxcb-present0:amd64 (1.17.0-2) ... 250s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 250s Setting up libblas3:amd64 (3.12.1-2) ... 250s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 250s Setting up libmunge2:amd64 (0.5.16-1) ... 250s Setting up libllvm17t64:amd64 (1:17.0.6-21) ... 250s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 250s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 250s Setting up fonts-dejavu-mono (2.37-8) ... 250s Setting up libhwloc15:amd64 (2.12.0-1) ... 250s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 250s Setting up fonts-dejavu-core (2.37-8) ... 251s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 251s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 251s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 251s Setting up libvulkan1:amd64 (1.4.304.0-1) ... 251s Setting up libwebp7:amd64 (1.5.0-0.1) ... 251s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 251s Setting up libxshmfence1:amd64 (1.3.3-1) ... 251s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 251s Setting up libpsm2-2 (11.2.185-2.1) ... 251s Setting up openmpi-common (5.0.7-1) ... 251s Setting up librdmacm1t64:amd64 (56.0-4ubuntu1) ... 251s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 251s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 251s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 251s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 251s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 251s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 251s Setting up libsz2:amd64 (1.1.3-1) ... 251s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 251s Setting up libfabric1:amd64 (1.17.0-3.1) ... 251s Setting up mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 251s Setting up liblapack3:amd64 (3.12.1-2) ... 251s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 251s Setting up libgbm1:amd64 (25.0.3-1ubuntu2) ... 251s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 251s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 251s Setting up libkim-api2:amd64 (2.3.0-1ubuntu1) ... 251s Setting up libhwloc-plugins:amd64 (2.12.0-1) ... 251s Setting up libtbbbind-2-5:amd64 (2022.0.0-2) ... 251s Setting up libpmix2t64:amd64 (5.0.6-5) ... 251s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 251s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 251s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 251s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 251s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 251s Setting up libxft2:amd64 (2.3.6-1build1) ... 251s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 251s Setting up libglx0:amd64 (1.7.0-1build1) ... 251s Setting up libproj25:amd64 (9.5.1-1) ... 251s Setting up libtk8.6:amd64 (8.6.16-1) ... 251s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 251s Setting up libtbb12:amd64 (2022.0.0-2) ... 251s Setting up libcairo2:amd64 (1.18.4-1) ... 251s Setting up libgl1:amd64 (1.7.0-1build1) ... 251s Setting up libamdhip64-5 (5.7.1-5.1) ... 251s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 251s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 251s Setting up libucx0:amd64 (1.18.1+ds-2) ... 251s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 251s Setting up libopenmpi40:amd64 (5.0.7-1) ... 251s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 251s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 251s Setting up openmpi-bin (5.0.7-1) ... 251s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 251s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 251s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 251s Setting up mpi-default-bin (1.18) ... 251s Setting up liblammps0t64:amd64 (20240207+dfsg-3build3) ... 251s Setting up lammps (20240207+dfsg-3build3) ... 251s Processing triggers for man-db (2.13.0-1) ... 251s Processing triggers for libc-bin (2.41-6ubuntu1) ... 252s autopkgtest [18:49:25]: test crack: [----------------------- 252s LAMMPS (7 Feb 2024 - Update 1) 252s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 252s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 252s using 1 OpenMP thread(s) per MPI task 252s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 252s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 252s 2 by 1 by 1 MPI processor grid 252s Created 8141 atoms 252s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 252s create_atoms CPU = 0.001 seconds 252s 302 atoms in group lower 252s 302 atoms in group upper 252s 604 atoms in group boundary 252s 7537 atoms in group mobile 252s 841 atoms in group leftupper 252s 841 atoms in group leftlower 252s Setting atom values ... 252s 841 settings made for type 252s Setting atom values ... 252s 841 settings made for type 252s Setting atom values ... 252s 302 settings made for type 252s Setting atom values ... 252s 302 settings made for type 252s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 252s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 252s Neighbor list info ... 252s update: every = 1 steps, delay = 5 steps, check = yes 252s max neighbors/atom: 2000, page size: 100000 252s master list distance cutoff = 2.8 252s ghost atom cutoff = 2.8 252s binsize = 1.4, bins = 80 56 1 252s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 252s (1) pair lj/cut, perpetual 252s attributes: half, newton on 252s pair build: half/bin/atomonly/newton 252s stencil: half/bin/2d 252s bin: standard 252s Setting up Verlet run ... 252s Unit style : lj 252s Current step : 0 252s Time step : 0.003 252s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 252s Step Temp E_pair E_mol TotEng Press Volume 252s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 252s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 252s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 253s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 253s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 253s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 253s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 253s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 253s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 253s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 253s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 253s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 253s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 253s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 253s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 253s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 253s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 254s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 254s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 254s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 254s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 254s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 254s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 254s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 254s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 254s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 254s Loop time of 1.70677 on 2 procs for 5000 steps with 8141 atoms 254s 254s Performance: 759329.179 tau/day, 2929.511 timesteps/s, 23.849 Matom-step/s 254s 98.4% CPU use with 2 MPI tasks x 1 OpenMP threads 254s 254s MPI task timing breakdown: 254s Section | min time | avg time | max time |%varavg| %total 254s --------------------------------------------------------------- 254s Pair | 1.2376 | 1.2394 | 1.2412 | 0.2 | 72.62 254s Neigh | 0.0872 | 0.092999 | 0.098798 | 1.9 | 5.45 254s Comm | 0.10986 | 0.1203 | 0.13074 | 3.0 | 7.05 254s Output | 0.00079707 | 0.0012591 | 0.0017212 | 1.3 | 0.07 254s Modify | 0.20937 | 0.21037 | 0.21137 | 0.2 | 12.33 254s Other | | 0.04244 | | | 2.49 254s 254s Nlocal: 4070.5 ave 4085 max 4056 min 254s Histogram: 1 0 0 0 0 0 0 0 0 1 254s Nghost: 207 ave 208 max 206 min 254s Histogram: 1 0 0 0 0 0 0 0 0 1 254s Neighs: 35700 ave 35927 max 35473 min 254s Histogram: 1 0 0 0 0 0 0 0 0 1 254s 254s Total # of neighbors = 71400 254s Ave neighs/atom = 8.7704213 254s Neighbor list builds = 106 254s Dangerous builds = 0 254s Total wall time: 0:00:01 254s LAMMPS (7 Feb 2024 - Update 1) 257s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 257s using 1 OpenMP thread(s) per MPI task 257s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 257s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 257s 1 by 1 by 1 MPI processor grid 257s Created 8141 atoms 257s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 257s create_atoms CPU = 0.001 seconds 257s 302 atoms in group lower 257s 302 atoms in group upper 257s 604 atoms in group boundary 257s 7537 atoms in group mobile 257s 841 atoms in group leftupper 257s 841 atoms in group leftlower 257s Setting atom values ... 257s 841 settings made for type 257s Setting atom values ... 257s 841 settings made for type 257s Setting atom values ... 257s 302 settings made for type 257s Setting atom values ... 257s 302 settings made for type 257s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 257s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 257s Neighbor list info ... 257s update: every = 1 steps, delay = 5 steps, check = yes 257s max neighbors/atom: 2000, page size: 100000 257s master list distance cutoff = 2.8 257s ghost atom cutoff = 2.8 257s binsize = 1.4, bins = 80 56 1 257s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 257s (1) pair lj/cut, perpetual 257s attributes: half, newton on 257s pair build: half/bin/atomonly/newton 257s stencil: half/bin/2d 257s bin: standard 257s Setting up Verlet run ... 257s Unit style : lj 257s Current step : 0 257s Time step : 0.003 257s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 257s Step Temp E_pair E_mol TotEng Press Volume 257s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 257s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 257s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 257s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 257s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 257s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 257s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 257s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 257s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 257s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 257s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 257s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 257s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 257s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 257s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 257s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 257s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 257s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 257s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 257s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 257s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 257s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 257s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 258s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 258s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 258s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 258s Loop time of 3.17461 on 1 procs for 5000 steps with 8141 atoms 258s 258s Performance: 408239.685 tau/day, 1574.999 timesteps/s, 12.822 Matom-step/s 258s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 258s 258s MPI task timing breakdown: 258s Section | min time | avg time | max time |%varavg| %total 258s --------------------------------------------------------------- 258s Pair | 2.5184 | 2.5184 | 2.5184 | 0.0 | 79.33 258s Neigh | 0.16949 | 0.16949 | 0.16949 | 0.0 | 5.34 258s Comm | 0.0030645 | 0.0030645 | 0.0030645 | 0.0 | 0.10 258s Output | 0.0011656 | 0.0011656 | 0.0011656 | 0.0 | 0.04 258s Modify | 0.42277 | 0.42277 | 0.42277 | 0.0 | 13.32 258s Other | | 0.05969 | | | 1.88 258s 258s Nlocal: 8141 ave 8141 max 8141 min 258s Histogram: 1 0 0 0 0 0 0 0 0 0 258s Nghost: 0 ave 0 max 0 min 258s Histogram: 1 0 0 0 0 0 0 0 0 0 258s Neighs: 71389 ave 71389 max 71389 min 258s Histogram: 1 0 0 0 0 0 0 0 0 0 258s 258s Total # of neighbors = 71389 258s Ave neighs/atom = 8.7690701 258s Neighbor list builds = 100 258s Dangerous builds = 0 258s Total wall time: 0:00:03 258s run: OK 258s autopkgtest [18:49:31]: test crack: -----------------------] 258s crack PASS 258s autopkgtest [18:49:31]: test crack: - - - - - - - - - - results - - - - - - - - - - 259s autopkgtest [18:49:32]: test dipole: preparing testbed 259s Reading package lists... 259s Building dependency tree... 259s Reading state information... 259s Starting pkgProblemResolver with broken count: 0 259s Starting 2 pkgProblemResolver with broken count: 0 259s Done 259s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 260s autopkgtest [18:49:33]: test dipole: [----------------------- 260s LAMMPS (7 Feb 2024 - Update 1) 260s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 260s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 260s using 1 OpenMP thread(s) per MPI task 260s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 260s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 260s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 260s 2 by 1 by 1 MPI processor grid 260s Created 200 atoms 260s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 260s create_atoms CPU = 0.001 seconds 260s Setting atom values ... 260s 200 settings made for mass 260s Setting atom values ... 260s 200 settings made for dipole/random 260s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 260s Neighbor list info ... 261s update: every = 1 steps, delay = 0 steps, check = yes 261s max neighbors/atom: 2000, page size: 100000 261s master list distance cutoff = 2.8 261s ghost atom cutoff = 2.8 261s binsize = 1.4, bins = 13 13 2 261s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 261s (1) pair lj/cut/dipole/cut, perpetual 261s attributes: half, newton on 261s pair build: half/bin/atomonly/newton 261s stencil: half/bin/2d 261s bin: standard 261s Setting up Verlet run ... 261s Unit style : lj 261s Current step : 0 261s Time step : 0.005 261s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 261s Step Temp E_pair c_erot TotEng Press 261s 0 0 -2.1909822 0 -2.1909822 -2.5750971 261s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 261s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 261s 1500 0.4211022 -2.8019061 0.19532181 -2.3829095 0.18067145 261s 2000 0.39019874 -2.7914862 0.22407011 -2.4032384 -0.40912648 261s 2500 0.40189542 -2.8134715 0.24278607 -2.4135855 -0.33547386 261s 3000 0.45253597 -2.8432831 0.22668907 -2.3930098 0.031945804 261s 3500 0.45543566 -2.80999 0.19086399 -2.3568315 0.029485295 261s 4000 0.40085091 -2.7761517 0.21847799 -2.3773051 -0.033769965 261s 4500 0.40189931 -2.7615835 0.20362841 -2.3616937 -0.17414063 261s 5000 0.41734987 -2.7649581 0.19662779 -2.349695 -0.36355203 261s 5500 0.39968404 -2.7679046 0.21787398 -2.370219 -0.2095 261s 6000 0.40475829 -2.8111506 0.26462853 -2.4084161 -0.073266954 261s 6500 0.41521558 -2.7828455 0.21593344 -2.369706 0.044857105 261s 7000 0.37923394 -2.7298781 0.19612107 -2.3525403 -0.41777291 261s 7500 0.42362281 -2.8061905 0.22489406 -2.3846858 0.26268515 261s 8000 0.43091638 -2.8618864 0.27325823 -2.4331247 -0.4441066 261s 8500 0.4921082 -2.8591309 0.21247682 -2.3694833 -0.1929702 261s 9000 0.42828025 -2.7900322 0.20827254 -2.3638934 -0.29757579 261s 9500 0.41689981 -2.7717449 0.21413721 -2.3569296 -0.16341068 261s 10000 0.46694926 -2.8131859 0.21390049 -2.3485714 -0.37713307 261s Loop time of 0.385077 on 2 procs for 10000 steps with 200 atoms 261s 261s Performance: 11218544.836 tau/day, 25968.854 timesteps/s, 5.194 Matom-step/s 261s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 261s 261s MPI task timing breakdown: 261s Section | min time | avg time | max time |%varavg| %total 261s --------------------------------------------------------------- 261s Pair | 0.20729 | 0.21917 | 0.23105 | 2.5 | 56.92 261s Neigh | 0.012522 | 0.012869 | 0.013216 | 0.3 | 3.34 261s Comm | 0.09597 | 0.10776 | 0.11956 | 3.6 | 27.99 261s Output | 0.00025405 | 0.00050184 | 0.00074963 | 0.0 | 0.13 261s Modify | 0.031091 | 0.03189 | 0.032689 | 0.4 | 8.28 261s Other | | 0.01288 | | | 3.34 261s 261s Nlocal: 100 ave 101 max 99 min 261s Histogram: 1 0 0 0 0 0 0 0 0 1 261s Nghost: 129 ave 129 max 129 min 261s Histogram: 2 0 0 0 0 0 0 0 0 0 261s Neighs: 827.5 ave 843 max 812 min 261s Histogram: 1 0 0 0 0 0 0 0 0 1 261s 261s Total # of neighbors = 1655 261s Ave neighs/atom = 8.275 261s Neighbor list builds = 679 261s Dangerous builds = 0 261s Total wall time: 0:00:00 261s LAMMPS (7 Feb 2024 - Update 1) 262s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 262s using 1 OpenMP thread(s) per MPI task 262s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 262s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 262s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 262s 1 by 1 by 1 MPI processor grid 262s Created 200 atoms 262s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 262s create_atoms CPU = 0.000 seconds 262s Setting atom values ... 262s 200 settings made for mass 262s Setting atom values ... 262s 200 settings made for dipole/random 262s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 262s Neighbor list info ... 262s update: every = 1 steps, delay = 0 steps, check = yes 262s max neighbors/atom: 2000, page size: 100000 262s master list distance cutoff = 2.8 262s ghost atom cutoff = 2.8 262s binsize = 1.4, bins = 13 13 2 262s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 262s (1) pair lj/cut/dipole/cut, perpetual 262s attributes: half, newton on 262s pair build: half/bin/atomonly/newton 262s stencil: half/bin/2d 262s bin: standard 262s Setting up Verlet run ... 262s Unit style : lj 262s Current step : 0 262s Time step : 0.005 262s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 262s Step Temp E_pair c_erot TotEng Press 262s 0 0 -2.1909822 0 -2.1909822 -2.5750971 262s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 262s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 262s 1500 0.42110221 -2.8019062 0.19532181 -2.3829095 0.18067141 262s 2000 0.39019964 -2.7914873 0.2240704 -2.4032387 -0.40914108 262s 2500 0.40258219 -2.8140936 0.24274448 -2.4135243 -0.33941924 262s 3000 0.41800133 -2.8282056 0.24466746 -2.4122942 -0.090527465 262s 3500 0.40116089 -2.7573067 0.18791549 -2.3581517 -0.10988473 262s 4000 0.44069383 -2.8320262 0.23306586 -2.3935358 -0.16090586 262s 4500 0.39984934 -2.7780055 0.2316558 -2.3801554 -0.060493508 262s 5000 0.38478499 -2.7506484 0.22192236 -2.3677873 -0.20522733 262s 5500 0.41563657 -2.7772758 0.21967501 -2.3637174 -0.21224098 262s 6000 0.4784307 -2.8050644 0.19178566 -2.3290259 -0.084370417 262s 6500 0.45915752 -2.8043874 0.21761744 -2.3475257 0.044744498 262s 7000 0.45492064 -2.7795535 0.20340455 -2.3269074 -0.027924625 262s 7500 0.41266295 -2.7515872 0.22903767 -2.3409876 -0.43730101 262s 8000 0.41905675 -2.7281536 0.19413869 -2.3111921 -0.020762772 262s 8500 0.42951176 -2.7616497 0.22863785 -2.3342855 -0.18867239 262s 9000 0.42532413 -2.748856 0.21378021 -2.3256584 0.015079949 262s 9500 0.42237159 -2.7266142 0.20255034 -2.3063545 -0.15538561 262s 10000 0.40758268 -2.778401 0.2746675 -2.3728562 -0.20811978 262s Loop time of 0.573707 on 1 procs for 10000 steps with 200 atoms 262s 262s Performance: 7529972.546 tau/day, 17430.492 timesteps/s, 3.486 Matom-step/s 262s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 262s 262s MPI task timing breakdown: 262s Section | min time | avg time | max time |%varavg| %total 262s --------------------------------------------------------------- 262s Pair | 0.43656 | 0.43656 | 0.43656 | 0.0 | 76.09 262s Neigh | 0.025405 | 0.025405 | 0.025405 | 0.0 | 4.43 262s Comm | 0.041296 | 0.041296 | 0.041296 | 0.0 | 7.20 262s Output | 0.00017675 | 0.00017675 | 0.00017675 | 0.0 | 0.03 262s Modify | 0.062932 | 0.062932 | 0.062932 | 0.0 | 10.97 262s Other | | 0.007336 | | | 1.28 262s 262s Nlocal: 200 ave 200 max 200 min 262s Histogram: 1 0 0 0 0 0 0 0 0 0 262s Nghost: 162 ave 162 max 162 min 262s Histogram: 1 0 0 0 0 0 0 0 0 0 262s Neighs: 1625 ave 1625 max 1625 min 262s Histogram: 1 0 0 0 0 0 0 0 0 0 262s 262s Total # of neighbors = 1625 262s Ave neighs/atom = 8.125 262s Neighbor list builds = 673 262s Dangerous builds = 0 262s Total wall time: 0:00:00 262s run: OK 262s autopkgtest [18:49:35]: test dipole: -----------------------] 262s dipole PASS 262s autopkgtest [18:49:35]: test dipole: - - - - - - - - - - results - - - - - - - - - - 263s autopkgtest [18:49:36]: test ellipse: preparing testbed 263s Reading package lists... 263s Building dependency tree... 263s Reading state information... 263s Starting pkgProblemResolver with broken count: 0 263s Starting 2 pkgProblemResolver with broken count: 0 263s Done 264s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 264s autopkgtest [18:49:37]: test ellipse: [----------------------- 265s LAMMPS (7 Feb 2024 - Update 1) 265s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 265s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 265s using 1 OpenMP thread(s) per MPI task 265s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 265s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 265s 2 by 1 by 1 MPI processor grid 265s Created 400 atoms 265s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 265s create_atoms CPU = 0.001 seconds 265s Setting atom values ... 265s 45 settings made for type/fraction 265s Setting atom values ... 265s 355 settings made for mass 265s Setting atom values ... 265s 45 settings made for mass 265s Setting atom values ... 265s 355 settings made for shape 265s Setting atom values ... 265s 45 settings made for shape 265s Setting atom values ... 265s 400 settings made for quat/random 265s 355 atoms in group spheroid 265s 265s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 265s 265s Your simulation uses code contributions which should be cited: 265s - pair gayberne command: doi:10.1063/1.3058435 265s The log file lists these citations in BibTeX format. 265s 265s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 265s 265s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 265s Neighbor list info ... 265s update: every = 1 steps, delay = 0 steps, check = yes 265s max neighbors/atom: 2000, page size: 100000 265s master list distance cutoff = 4.8 265s ghost atom cutoff = 4.8 265s binsize = 2.4, bins = 59 59 3 265s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 265s (1) pair gayberne, perpetual 265s attributes: half, newton on 265s pair build: half/bin/atomonly/newton 265s stencil: half/bin/2d 265s bin: standard 265s Setting up Verlet run ... 265s Unit style : lj 265s Current step : 0 265s Time step : 0.002 265s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 265s Step c_rot E_pair TotEng Press Volume 265s 0 2.2718861 0 2.394 0.04788 20000 265s 100 1.7443419 0 1.8381003 0.035765442 20557.278 265s 200 2.2768798 0 2.3992621 0.046544845 20618.928 265s 300 1.8573086 0 1.9571389 0.04239709 18464.842 265s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 265s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 265s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 265s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 265s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 265s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 265s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 265s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 265s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 265s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 265s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 265s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 265s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 265s 1700 1.9434093 -3.2434441 -1.3043926 0.72465776 1136.9866 265s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 265s 1900 2.0618126 -3.2264372 -1.162807 0.93455597 1155.8306 265s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 265s Loop time of 0.342012 on 2 procs for 2000 steps with 400 atoms 265s 265s Performance: 1010490.192 tau/day, 5847.744 timesteps/s, 2.339 Matom-step/s 265s 98.9% CPU use with 2 MPI tasks x 1 OpenMP threads 265s 265s MPI task timing breakdown: 265s Section | min time | avg time | max time |%varavg| %total 265s --------------------------------------------------------------- 265s Pair | 0.18899 | 0.20177 | 0.21454 | 2.8 | 58.99 265s Neigh | 0.0076129 | 0.0077102 | 0.0078075 | 0.1 | 2.25 265s Comm | 0.026176 | 0.038863 | 0.051549 | 6.4 | 11.36 265s Output | 0.0097325 | 0.0098572 | 0.0099819 | 0.1 | 2.88 265s Modify | 0.079285 | 0.079805 | 0.080325 | 0.2 | 23.33 265s Other | | 0.004011 | | | 1.17 265s 265s Nlocal: 200 ave 204 max 196 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s Nghost: 198.5 ave 200 max 197 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s Neighs: 1510.5 ave 1546 max 1475 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s 265s Total # of neighbors = 3021 265s Ave neighs/atom = 7.5525 265s Neighbor list builds = 351 265s Dangerous builds = 0 265s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 265s Setting up Verlet run ... 265s Unit style : lj 265s Current step : 2000 265s Time step : 0.002 265s Per MPI rank memory allocation (min/avg/max) = 6.898 | 6.898 | 6.898 Mbytes 265s Step c_rot E_pair TotEng Press Volume 265s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 265s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 265s 2200 1.9098636 -3.4103342 -1.5286928 0.58806421 1125.7713 265s 2300 1.9069019 -3.4099452 -1.610028 0.63472536 1125.7713 265s 2400 1.9773105 -3.4856993 -1.5268536 0.68904913 1125.7713 265s 2500 2.0027582 -3.5144592 -1.4900205 0.59925284 1125.7713 265s 2600 1.9616624 -3.4744356 -1.5230915 0.26873751 1125.7713 265s 2700 1.8601147 -3.3625731 -1.487211 0.68399849 1125.7713 265s 2800 1.8194349 -3.3190942 -1.5148089 0.6253534 1125.7713 265s 2900 1.8465285 -3.3451867 -1.5508324 0.60146161 1125.7713 265s 3000 1.8894697 -3.3918161 -1.5180286 0.6121204 1125.7713 265s 3100 1.8667782 -3.3664981 -1.5276073 0.54220867 1125.7713 265s 3200 1.8235755 -3.3205753 -1.5178132 0.82786428 1125.7713 265s 3300 1.7937373 -3.2889154 -1.4975068 0.57067419 1125.7713 265s 3400 1.828955 -3.3291496 -1.5067653 1.0360542 1125.7713 265s 3500 1.8536352 -3.3525756 -1.5177124 0.56578139 1125.7713 265s 3600 1.7698175 -3.2647143 -1.5345765 0.50355355 1125.7713 265s 3700 1.7690567 -3.2653073 -1.4812992 0.7916524 1125.7713 265s 3800 1.8637674 -3.3670314 -1.5049293 0.58377083 1125.7713 265s 3900 1.9053975 -3.4123772 -1.4973185 0.64862786 1125.7713 265s 4000 1.878375 -3.3835516 -1.5382418 0.73838477 1125.7713 265s Loop time of 0.348589 on 2 procs for 2000 steps with 400 atoms 265s 265s Performance: 991426.677 tau/day, 5737.423 timesteps/s, 2.295 Matom-step/s 265s 98.9% CPU use with 2 MPI tasks x 1 OpenMP threads 265s 265s MPI task timing breakdown: 265s Section | min time | avg time | max time |%varavg| %total 265s --------------------------------------------------------------- 265s Pair | 0.24018 | 0.25168 | 0.26319 | 2.3 | 72.20 265s Neigh | 0.0024761 | 0.0024822 | 0.0024884 | 0.0 | 0.71 265s Comm | 0.030673 | 0.041685 | 0.052696 | 5.4 | 11.96 265s Output | 0.010046 | 0.010177 | 0.010309 | 0.1 | 2.92 265s Modify | 0.038145 | 0.038545 | 0.038945 | 0.2 | 11.06 265s Other | | 0.004017 | | | 1.15 265s 265s Nlocal: 200 ave 203 max 197 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s Nghost: 207.5 ave 228 max 187 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s Neighs: 1548.5 ave 1608 max 1489 min 265s Histogram: 1 0 0 0 0 0 0 0 0 1 265s 265s Total # of neighbors = 3097 265s Ave neighs/atom = 7.7425 265s Neighbor list builds = 45 265s Dangerous builds = 0 265s Total wall time: 0:00:00 266s LAMMPS (7 Feb 2024 - Update 1) 266s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 266s using 1 OpenMP thread(s) per MPI task 266s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 266s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 266s 1 by 1 by 1 MPI processor grid 266s Created 400 atoms 266s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 266s create_atoms CPU = 0.000 seconds 266s Setting atom values ... 266s 45 settings made for type/fraction 266s Setting atom values ... 266s 355 settings made for mass 266s Setting atom values ... 266s 45 settings made for mass 266s Setting atom values ... 266s 355 settings made for shape 266s Setting atom values ... 266s 45 settings made for shape 266s Setting atom values ... 266s 400 settings made for quat/random 266s 355 atoms in group spheroid 266s 266s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 266s 266s Your simulation uses code contributions which should be cited: 266s - pair gayberne command: doi:10.1063/1.3058435 266s The log file lists these citations in BibTeX format. 266s 266s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 266s 266s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 266s Neighbor list info ... 266s update: every = 1 steps, delay = 0 steps, check = yes 266s max neighbors/atom: 2000, page size: 100000 266s master list distance cutoff = 4.8 266s ghost atom cutoff = 4.8 266s binsize = 2.4, bins = 59 59 3 266s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 266s (1) pair gayberne, perpetual 266s attributes: half, newton on 266s pair build: half/bin/atomonly/newton 266s stencil: half/bin/2d 266s bin: standard 266s Setting up Verlet run ... 266s Unit style : lj 266s Current step : 0 266s Time step : 0.002 266s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 266s Step c_rot E_pair TotEng Press Volume 266s 0 2.2718861 0 2.394 0.04788 20000 266s 100 1.7443419 0 1.8381003 0.035765442 20557.278 266s 200 2.2768798 0 2.3992621 0.046544845 20618.928 266s 300 1.8573086 0 1.9571389 0.04239709 18464.842 266s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 266s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 266s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 266s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 266s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 266s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 266s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 266s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 266s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 266s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 266s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 266s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 266s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 266s 1700 1.9434093 -3.2434441 -1.3043926 0.72465775 1136.9866 266s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 266s 1900 2.0618126 -3.2264372 -1.162807 0.93455596 1155.8306 266s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 266s Loop time of 0.589713 on 1 procs for 2000 steps with 400 atoms 266s 266s Performance: 586048.244 tau/day, 3391.483 timesteps/s, 1.357 Matom-step/s 266s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 266s 266s MPI task timing breakdown: 266s Section | min time | avg time | max time |%varavg| %total 266s --------------------------------------------------------------- 266s Pair | 0.40121 | 0.40121 | 0.40121 | 0.0 | 68.04 267s Neigh | 0.015185 | 0.015185 | 0.015185 | 0.0 | 2.57 267s Comm | 0.012474 | 0.012474 | 0.012474 | 0.0 | 2.12 267s Output | 0.01292 | 0.01292 | 0.01292 | 0.0 | 2.19 267s Modify | 0.14499 | 0.14499 | 0.14499 | 0.0 | 24.59 267s Other | | 0.002935 | | | 0.50 267s 267s Nlocal: 400 ave 400 max 400 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Nghost: 247 ave 247 max 247 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Neighs: 3021 ave 3021 max 3021 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s 267s Total # of neighbors = 3021 267s Ave neighs/atom = 7.5525 267s Neighbor list builds = 351 267s Dangerous builds = 0 267s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 267s Setting up Verlet run ... 267s Unit style : lj 267s Current step : 2000 267s Time step : 0.002 267s Per MPI rank memory allocation (min/avg/max) = 6.939 | 6.939 | 6.939 Mbytes 267s Step c_rot E_pair TotEng Press Volume 267s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 267s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 267s 2200 1.9098635 -3.4103342 -1.5286928 0.58806422 1125.7713 267s 2300 1.9069019 -3.4099452 -1.610028 0.63472566 1125.7713 267s 2400 1.9773106 -3.4856993 -1.5268537 0.6890488 1125.7713 267s 2500 2.0027577 -3.5144587 -1.4900206 0.59925482 1125.7713 267s 2600 1.9616627 -3.4744359 -1.5230914 0.26873643 1125.7713 267s 2700 1.8601143 -3.3625727 -1.4872111 0.68399923 1125.7713 267s 2800 1.8194315 -3.3190907 -1.5148099 0.62535541 1125.7713 267s 2900 1.8465014 -3.3451581 -1.5508257 0.60156027 1125.7713 267s 3000 1.8894895 -3.391836 -1.5180354 0.61205823 1125.7713 267s 3100 1.8668465 -3.3665673 -1.5276094 0.54215927 1125.7713 267s 3200 1.8233438 -3.3203287 -1.5178269 0.82854887 1125.7713 267s 3300 1.794649 -3.2898698 -1.4973919 0.56704285 1125.7713 267s 3400 1.8290008 -3.3295346 -1.5070098 1.0356016 1125.7713 267s 3500 1.8535551 -3.3522046 -1.5121703 0.5801663 1125.7713 267s 3600 1.7849961 -3.2815422 -1.5326244 0.45764466 1125.7713 267s 3700 1.7695363 -3.2652329 -1.4772023 0.84882871 1125.7713 267s 3800 1.8713051 -3.3743092 -1.5234548 0.38004095 1125.7713 267s 3900 1.9336013 -3.4411866 -1.4980326 0.64679675 1125.7713 267s 4000 1.9271117 -3.4346745 -1.5345035 0.4492419 1125.7713 267s Loop time of 0.609822 on 1 procs for 2000 steps with 400 atoms 267s 267s Performance: 566722.369 tau/day, 3279.643 timesteps/s, 1.312 Matom-step/s 267s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 267s 267s MPI task timing breakdown: 267s Section | min time | avg time | max time |%varavg| %total 267s --------------------------------------------------------------- 267s Pair | 0.50055 | 0.50055 | 0.50055 | 0.0 | 82.08 267s Neigh | 0.0047382 | 0.0047382 | 0.0047382 | 0.0 | 0.78 267s Comm | 0.012737 | 0.012737 | 0.012737 | 0.0 | 2.09 267s Output | 0.012661 | 0.012661 | 0.012661 | 0.0 | 2.08 267s Modify | 0.076892 | 0.076892 | 0.076892 | 0.0 | 12.61 267s Other | | 0.002244 | | | 0.37 267s 267s Nlocal: 400 ave 400 max 400 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Nghost: 242 ave 242 max 242 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s Neighs: 3080 ave 3080 max 3080 min 267s Histogram: 1 0 0 0 0 0 0 0 0 0 267s 267s Total # of neighbors = 3080 267s Ave neighs/atom = 7.7 267s Neighbor list builds = 45 267s Dangerous builds = 0 267s Total wall time: 0:00:01 267s LAMMPS (7 Feb 2024 - Update 1) 267s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 267s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 267s using 1 OpenMP thread(s) per MPI task 267s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 267s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 267s 2 by 1 by 1 MPI processor grid 267s Created 400 atoms 267s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 267s create_atoms CPU = 0.001 seconds 267s Setting atom values ... 267s 45 settings made for type/fraction 267s Setting atom values ... 267s 355 settings made for mass 267s Setting atom values ... 267s 45 settings made for mass 267s Setting atom values ... 267s 355 settings made for shape 267s Setting atom values ... 267s 45 settings made for shape 267s Setting atom values ... 267s 400 settings made for quat/random 267s 355 atoms in group spheroid 267s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 267s Neighbor list info ... 267s update: every = 1 steps, delay = 0 steps, check = yes 267s max neighbors/atom: 2000, page size: 100000 267s master list distance cutoff = 4.8 267s ghost atom cutoff = 4.8 267s binsize = 2.4, bins = 59 59 3 267s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 267s (1) pair resquared, perpetual 267s attributes: half, newton on 267s pair build: half/bin/atomonly/newton 267s stencil: half/bin/2d 267s bin: standard 267s Setting up Verlet run ... 267s Unit style : lj 267s Current step : 0 267s Time step : 0.002 267s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 267s Step c_rot E_pair TotEng Press Volume 267s 0 2.2718861 0 2.394 0.04788 20000 267s 100 1.7443419 0 1.8381003 0.035765442 20557.278 267s 200 2.2768798 0 2.3992621 0.046544845 20618.928 267s 300 1.8573086 0 1.9571389 0.04239709 18464.842 267s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 267s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 267s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 267s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 267s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 267s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 267s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 268s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 268s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 268s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 268s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 268s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 268s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 268s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 268s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 268s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 268s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 268s Loop time of 0.458859 on 2 procs for 2000 steps with 400 atoms 268s 268s Performance: 753172.169 tau/day, 4358.635 timesteps/s, 1.743 Matom-step/s 268s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 268s 268s MPI task timing breakdown: 268s Section | min time | avg time | max time |%varavg| %total 268s --------------------------------------------------------------- 268s Pair | 0.32843 | 0.32909 | 0.32974 | 0.1 | 71.72 268s Neigh | 0.0070778 | 0.0072174 | 0.007357 | 0.2 | 1.57 268s Comm | 0.027708 | 0.028431 | 0.029154 | 0.4 | 6.20 268s Output | 0.010492 | 0.010624 | 0.010756 | 0.1 | 2.32 268s Modify | 0.079417 | 0.079694 | 0.079971 | 0.1 | 17.37 268s Other | | 0.003806 | | | 0.83 268s 268s Nlocal: 200 ave 206 max 194 min 268s Histogram: 1 0 0 0 0 0 0 0 0 1 268s Nghost: 168.5 ave 169 max 168 min 268s Histogram: 1 0 0 0 0 0 0 0 0 1 268s Neighs: 941 ave 998 max 884 min 268s Histogram: 1 0 0 0 0 0 0 0 0 1 268s 268s Total # of neighbors = 1882 268s Ave neighs/atom = 4.705 268s Neighbor list builds = 415 268s Dangerous builds = 0 268s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 268s Setting up Verlet run ... 268s Unit style : lj 268s Current step : 2000 268s Time step : 0.002 268s Per MPI rank memory allocation (min/avg/max) = 6.889 | 6.889 | 6.889 Mbytes 268s Step c_rot E_pair TotEng Press Volume 268s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 268s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 268s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 268s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 268s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 268s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 268s 2600 1.9587508 0.18695271 2.1506896 1.3513902 1669.0751 268s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 268s 2800 1.9870267 0.15716585 2.1207709 1.2045104 1669.0751 268s 2900 1.9230662 0.224487 2.1353571 1.4964288 1669.0751 268s 3000 2.0042113 0.13903203 2.1149787 1.2100649 1669.0751 268s 3100 1.9543695 0.19149462 2.0984705 1.3409712 1669.0751 268s 3200 1.9991114 0.14441986 2.1292354 1.1756472 1669.0751 268s 3300 1.9629782 0.18246612 2.1463675 1.3162684 1669.0751 268s 3400 1.9403529 0.20630278 2.168704 1.4952817 1669.0751 268s 3500 1.9887414 0.15531284 2.1485278 1.2530438 1669.0751 268s 3600 1.9732705 0.17171749 2.1755758 1.2958612 1669.0751 268s 3700 2.0072859 0.13576438 2.1212392 1.1421261 1669.0751 268s 3800 1.9581319 0.18762046 2.1743395 1.371088 1669.0751 268s 3900 1.9761472 0.16864775 2.1429629 1.3037468 1669.0751 268s 4000 1.9615776 0.18391221 2.1244703 1.4180052 1669.0751 268s Loop time of 0.703681 on 2 procs for 2000 steps with 400 atoms 268s 268s Performance: 491131.765 tau/day, 2842.198 timesteps/s, 1.137 Matom-step/s 268s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 268s 268s MPI task timing breakdown: 268s Section | min time | avg time | max time |%varavg| %total 268s --------------------------------------------------------------- 268s Pair | 0.59408 | 0.60417 | 0.61425 | 1.3 | 85.86 268s Neigh | 0.0019934 | 0.0020593 | 0.0021252 | 0.1 | 0.29 268s Comm | 0.034482 | 0.044513 | 0.054543 | 4.8 | 6.33 268s Output | 0.010855 | 0.011009 | 0.011162 | 0.1 | 1.56 268s Modify | 0.037834 | 0.038353 | 0.038872 | 0.3 | 5.45 268s Other | | 0.003581 | | | 0.51 268s 268s Nlocal: 200 ave 204 max 196 min 268s Histogram: 1 0 0 0 0 0 0 0 0 1 268s Nghost: 159.5 ave 161 max 158 min 268s Histogram: 1 0 0 0 0 0 0 0 0 1 268s Neighs: 936 ave 1007 max 865 min 268s Histogram: 1 0 0 0 0 0 0 0 0 1 268s 268s Total # of neighbors = 1872 268s Ave neighs/atom = 4.68 268s Neighbor list builds = 50 268s Dangerous builds = 0 268s Total wall time: 0:00:01 269s LAMMPS (7 Feb 2024 - Update 1) 270s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 270s using 1 OpenMP thread(s) per MPI task 270s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 270s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 270s 1 by 1 by 1 MPI processor grid 270s Created 400 atoms 270s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 270s create_atoms CPU = 0.000 seconds 270s Setting atom values ... 270s 45 settings made for type/fraction 270s Setting atom values ... 270s 355 settings made for mass 270s Setting atom values ... 270s 45 settings made for mass 270s Setting atom values ... 270s 355 settings made for shape 270s Setting atom values ... 270s 45 settings made for shape 270s Setting atom values ... 270s 400 settings made for quat/random 270s 355 atoms in group spheroid 270s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 270s Neighbor list info ... 270s update: every = 1 steps, delay = 0 steps, check = yes 270s max neighbors/atom: 2000, page size: 100000 270s master list distance cutoff = 4.8 270s ghost atom cutoff = 4.8 270s binsize = 2.4, bins = 59 59 3 270s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 270s (1) pair resquared, perpetual 270s attributes: half, newton on 270s pair build: half/bin/atomonly/newton 270s stencil: half/bin/2d 270s bin: standard 270s Setting up Verlet run ... 270s Unit style : lj 270s Current step : 0 270s Time step : 0.002 270s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 270s Step c_rot E_pair TotEng Press Volume 270s 0 2.2718861 0 2.394 0.04788 20000 270s 100 1.7443419 0 1.8381003 0.035765442 20557.278 270s 200 2.2768798 0 2.3992621 0.046544845 20618.928 270s 300 1.8573086 0 1.9571389 0.04239709 18464.842 270s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 270s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 270s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 270s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 270s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 270s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 270s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 270s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 270s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 270s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 270s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 270s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 270s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 270s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 270s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 270s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 270s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 270s Loop time of 0.84166 on 1 procs for 2000 steps with 400 atoms 270s 270s Performance: 410617.290 tau/day, 2376.257 timesteps/s, 950.503 katom-step/s 270s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 270s 270s MPI task timing breakdown: 270s Section | min time | avg time | max time |%varavg| %total 270s --------------------------------------------------------------- 270s Pair | 0.65766 | 0.65766 | 0.65766 | 0.0 | 78.14 270s Neigh | 0.01419 | 0.01419 | 0.01419 | 0.0 | 1.69 270s Comm | 0.0096059 | 0.0096059 | 0.0096059 | 0.0 | 1.14 270s Output | 0.01296 | 0.01296 | 0.01296 | 0.0 | 1.54 270s Modify | 0.14417 | 0.14417 | 0.14417 | 0.0 | 17.13 271s Other | | 0.003075 | | | 0.37 271s 271s Nlocal: 400 ave 400 max 400 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s Nghost: 212 ave 212 max 212 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s Neighs: 1882 ave 1882 max 1882 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s 271s Total # of neighbors = 1882 271s Ave neighs/atom = 4.705 271s Neighbor list builds = 415 271s Dangerous builds = 0 271s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 271s Setting up Verlet run ... 271s Unit style : lj 271s Current step : 2000 271s Time step : 0.002 271s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 271s Step c_rot E_pair TotEng Press Volume 271s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 271s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 271s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 271s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 271s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 271s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 271s 2600 1.9587508 0.18695272 2.1506896 1.3513902 1669.0751 271s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 271s 2800 1.9870267 0.15716584 2.1207709 1.2045103 1669.0751 271s 2900 1.9230661 0.22448715 2.1353571 1.4964295 1669.0751 271s 3000 2.0042113 0.13903205 2.1149788 1.2100651 1669.0751 271s 3100 1.9543696 0.19149451 2.0984704 1.3409708 1669.0751 271s 3200 1.9991114 0.14441986 2.1292353 1.1756471 1669.0751 271s 3300 1.9629782 0.18246604 2.1463674 1.3162682 1669.0751 271s 3400 1.9403526 0.2063031 2.1687041 1.4952828 1669.0751 271s 3500 1.9887417 0.15531257 2.1485281 1.2530419 1669.0751 271s 3600 1.9732713 0.17171668 2.1755748 1.2958589 1669.0751 271s 3700 2.0072841 0.13576627 2.1212376 1.1421332 1669.0751 271s 3800 1.9581293 0.18762314 2.1743434 1.3710999 1669.0751 271s 3900 1.9761567 0.16863762 2.1429558 1.303685 1669.0751 271s 4000 1.9615813 0.18390829 2.1244694 1.4179775 1669.0751 271s Loop time of 1.31786 on 1 procs for 2000 steps with 400 atoms 271s 271s Performance: 262243.079 tau/day, 1517.610 timesteps/s, 607.044 katom-step/s 271s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 271s 271s MPI task timing breakdown: 271s Section | min time | avg time | max time |%varavg| %total 271s --------------------------------------------------------------- 271s Pair | 1.2105 | 1.2105 | 1.2105 | 0.0 | 91.85 271s Neigh | 0.00398 | 0.00398 | 0.00398 | 0.0 | 0.30 271s Comm | 0.011627 | 0.011627 | 0.011627 | 0.0 | 0.88 271s Output | 0.013228 | 0.013228 | 0.013228 | 0.0 | 1.00 271s Modify | 0.07614 | 0.07614 | 0.07614 | 0.0 | 5.78 271s Other | | 0.002423 | | | 0.18 271s 271s Nlocal: 400 ave 400 max 400 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s Nghost: 206 ave 206 max 206 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s Neighs: 1872 ave 1872 max 1872 min 271s Histogram: 1 0 0 0 0 0 0 0 0 0 271s 271s Total # of neighbors = 1872 271s Ave neighs/atom = 4.68 271s Neighbor list builds = 50 271s Dangerous builds = 0 271s Total wall time: 0:00:02 271s run: OK 271s autopkgtest [18:49:44]: test ellipse: -----------------------] 272s ellipse PASS 272s autopkgtest [18:49:45]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 272s autopkgtest [18:49:45]: test flow: preparing testbed 272s Reading package lists... 272s Building dependency tree... 272s Reading state information... 273s Starting pkgProblemResolver with broken count: 0 273s Starting 2 pkgProblemResolver with broken count: 0 273s Done 273s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 274s autopkgtest [18:49:47]: test flow: [----------------------- 274s LAMMPS (7 Feb 2024 - Update 1) 274s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 274s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 274s using 1 OpenMP thread(s) per MPI task 274s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 274s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 274s 2 by 1 by 1 MPI processor grid 274s Created 420 atoms 274s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 274s create_atoms CPU = 0.000 seconds 274s 60 atoms in group lower 274s 60 atoms in group upper 274s 120 atoms in group boundary 274s 300 atoms in group flow 274s Setting atom values ... 274s 60 settings made for type 274s Setting atom values ... 274s 60 settings made for type 274s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 274s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 274s Neighbor list info ... 274s update: every = 1 steps, delay = 5 steps, check = yes 274s max neighbors/atom: 2000, page size: 100000 274s master list distance cutoff = 1.42246 274s ghost atom cutoff = 1.42246 274s binsize = 0.71123, bins = 37 32 1 274s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 274s (1) pair lj/cut, perpetual 274s attributes: half, newton on 274s pair build: half/bin/atomonly/newton 274s stencil: half/bin/2d 274s bin: standard 274s Setting up Verlet run ... 274s Unit style : lj 274s Current step : 0 274s Time step : 0.003 274s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 274s Step Temp E_pair E_mol TotEng Press Volume 274s 0 1 0 0 0.71190476 0.52314537 571.54286 274s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 274s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 274s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 274s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 274s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 274s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 274s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 274s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 274s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 274s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 274s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 274s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 274s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 274s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 274s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 274s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 274s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 274s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 274s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 274s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 274s Loop time of 0.13799 on 2 procs for 10000 steps with 420 atoms 274s 274s Performance: 18783912.953 tau/day, 72468.800 timesteps/s, 30.437 Matom-step/s 274s 99.1% CPU use with 2 MPI tasks x 1 OpenMP threads 274s 274s MPI task timing breakdown: 274s Section | min time | avg time | max time |%varavg| %total 274s --------------------------------------------------------------- 274s Pair | 0.024554 | 0.024556 | 0.024558 | 0.0 | 17.80 274s Neigh | 0.014803 | 0.01484 | 0.014878 | 0.0 | 10.75 274s Comm | 0.052344 | 0.052741 | 0.053139 | 0.2 | 38.22 274s Output | 0.00017564 | 0.00034689 | 0.00051815 | 0.0 | 0.25 274s Modify | 0.034491 | 0.034623 | 0.034756 | 0.1 | 25.09 274s Other | | 0.01088 | | | 7.89 274s 274s Nlocal: 210 ave 213 max 207 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Nghost: 50.5 ave 51 max 50 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s Neighs: 480.5 ave 492 max 469 min 274s Histogram: 1 0 0 0 0 0 0 0 0 1 274s 274s Total # of neighbors = 961 274s Ave neighs/atom = 2.2880952 274s Neighbor list builds = 964 274s Dangerous builds = 0 274s Total wall time: 0:00:00 275s LAMMPS (7 Feb 2024 - Update 1) 275s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 275s using 1 OpenMP thread(s) per MPI task 275s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 275s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 275s 1 by 1 by 1 MPI processor grid 275s Created 420 atoms 275s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 275s create_atoms CPU = 0.000 seconds 275s 60 atoms in group lower 275s 60 atoms in group upper 275s 120 atoms in group boundary 275s 300 atoms in group flow 275s Setting atom values ... 275s 60 settings made for type 275s Setting atom values ... 275s 60 settings made for type 275s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 275s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 275s Neighbor list info ... 275s update: every = 1 steps, delay = 5 steps, check = yes 275s max neighbors/atom: 2000, page size: 100000 275s master list distance cutoff = 1.42246 275s ghost atom cutoff = 1.42246 275s binsize = 0.71123, bins = 37 32 1 275s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 275s (1) pair lj/cut, perpetual 275s attributes: half, newton on 275s pair build: half/bin/atomonly/newton 275s stencil: half/bin/2d 275s bin: standard 275s Setting up Verlet run ... 275s Unit style : lj 275s Current step : 0 275s Time step : 0.003 275s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 275s Step Temp E_pair E_mol TotEng Press Volume 275s 0 1 0 0 0.71190476 0.52314537 571.54286 275s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 275s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 275s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 275s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 275s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 275s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 275s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 275s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 275s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 275s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 275s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 275s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 275s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 275s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 275s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 275s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 275s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 275s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 275s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 275s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 275s Loop time of 0.161424 on 1 procs for 10000 steps with 420 atoms 275s 275s Performance: 16057136.744 tau/day, 61948.830 timesteps/s, 26.019 Matom-step/s 275s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 275s 275s MPI task timing breakdown: 275s Section | min time | avg time | max time |%varavg| %total 275s --------------------------------------------------------------- 275s Pair | 0.04764 | 0.04764 | 0.04764 | 0.0 | 29.51 275s Neigh | 0.029189 | 0.029189 | 0.029189 | 0.0 | 18.08 275s Comm | 0.0061755 | 0.0061755 | 0.0061755 | 0.0 | 3.83 275s Output | 0.00014307 | 0.00014307 | 0.00014307 | 0.0 | 0.09 275s Modify | 0.069306 | 0.069306 | 0.069306 | 0.0 | 42.93 275s Other | | 0.00897 | | | 5.56 275s 275s Nlocal: 420 ave 420 max 420 min 275s Histogram: 1 0 0 0 0 0 0 0 0 0 275s Nghost: 46 ave 46 max 46 min 275s Histogram: 1 0 0 0 0 0 0 0 0 0 275s Neighs: 952 ave 952 max 952 min 275s Histogram: 1 0 0 0 0 0 0 0 0 0 275s 275s Total # of neighbors = 952 275s Ave neighs/atom = 2.2666667 275s Neighbor list builds = 996 275s Dangerous builds = 0 275s Total wall time: 0:00:00 275s LAMMPS (7 Feb 2024 - Update 1) 275s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 275s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 275s using 1 OpenMP thread(s) per MPI task 275s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 275s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 275s 2 by 1 by 1 MPI processor grid 275s Created 420 atoms 275s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 275s create_atoms CPU = 0.000 seconds 275s 60 atoms in group lower 275s 60 atoms in group upper 275s 120 atoms in group boundary 275s 300 atoms in group flow 275s Setting atom values ... 275s 60 settings made for type 275s Setting atom values ... 275s 60 settings made for type 275s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 275s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 275s Neighbor list info ... 275s update: every = 1 steps, delay = 5 steps, check = yes 275s max neighbors/atom: 2000, page size: 100000 275s master list distance cutoff = 1.42246 275s ghost atom cutoff = 1.42246 275s binsize = 0.71123, bins = 37 32 1 275s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 275s (1) pair lj/cut, perpetual 275s attributes: half, newton on 275s pair build: half/bin/atomonly/newton 275s stencil: half/bin/2d 275s bin: standard 275s Setting up Verlet run ... 275s Unit style : lj 275s Current step : 0 275s Time step : 0.003 275s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 275s Step Temp E_pair E_mol TotEng Press Volume 275s 0 1 0 0 0.71190476 0.52314537 571.54286 275s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 275s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 275s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 275s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 275s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 275s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 275s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 275s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 275s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 275s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 275s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 275s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 275s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 275s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 275s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 275s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 275s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 275s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 275s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 275s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 275s Loop time of 0.160405 on 2 procs for 10000 steps with 420 atoms 275s 275s Performance: 16159139.142 tau/day, 62342.358 timesteps/s, 26.184 Matom-step/s 275s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 275s 275s MPI task timing breakdown: 275s Section | min time | avg time | max time |%varavg| %total 275s --------------------------------------------------------------- 275s Pair | 0.027101 | 0.02734 | 0.027579 | 0.1 | 17.04 275s Neigh | 0.0094533 | 0.0094564 | 0.0094595 | 0.0 | 5.90 275s Comm | 0.052408 | 0.052555 | 0.052702 | 0.1 | 32.76 275s Output | 0.00017522 | 0.00035914 | 0.00054305 | 0.0 | 0.22 275s Modify | 0.059573 | 0.059963 | 0.060353 | 0.2 | 37.38 275s Other | | 0.01073 | | | 6.69 275s 275s Nlocal: 210 ave 213 max 207 min 275s Histogram: 1 0 0 0 0 0 0 0 0 1 275s Nghost: 50 ave 51 max 49 min 275s Histogram: 1 0 0 0 0 0 0 0 0 1 275s Neighs: 558.5 ave 573 max 544 min 275s Histogram: 1 0 0 0 0 0 0 0 0 1 275s 275s Total # of neighbors = 1117 275s Ave neighs/atom = 2.6595238 275s Neighbor list builds = 562 275s Dangerous builds = 0 275s Total wall time: 0:00:00 275s LAMMPS (7 Feb 2024 - Update 1) 276s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 276s using 1 OpenMP thread(s) per MPI task 276s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 276s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 276s 1 by 1 by 1 MPI processor grid 276s Created 420 atoms 276s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 276s create_atoms CPU = 0.000 seconds 276s 60 atoms in group lower 276s 60 atoms in group upper 276s 120 atoms in group boundary 276s 300 atoms in group flow 276s Setting atom values ... 276s 60 settings made for type 276s Setting atom values ... 276s 60 settings made for type 276s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 276s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 276s Neighbor list info ... 276s update: every = 1 steps, delay = 5 steps, check = yes 276s max neighbors/atom: 2000, page size: 100000 276s master list distance cutoff = 1.42246 276s ghost atom cutoff = 1.42246 276s binsize = 0.71123, bins = 37 32 1 276s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 276s (1) pair lj/cut, perpetual 276s attributes: half, newton on 276s pair build: half/bin/atomonly/newton 276s stencil: half/bin/2d 276s bin: standard 276s Setting up Verlet run ... 276s Unit style : lj 276s Current step : 0 276s Time step : 0.003 276s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 276s Step Temp E_pair E_mol TotEng Press Volume 276s 0 1 0 0 0.71190476 0.52314537 571.54286 276s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 276s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 276s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 276s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 276s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 276s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 276s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 276s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 276s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 276s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 276s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 276s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 276s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 276s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 276s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 276s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 276s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 276s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 276s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 276s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 276s Loop time of 0.191848 on 1 procs for 10000 steps with 420 atoms 276s 276s Performance: 13510693.714 tau/day, 52124.590 timesteps/s, 21.892 Matom-step/s 276s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 276s 276s MPI task timing breakdown: 276s Section | min time | avg time | max time |%varavg| %total 276s --------------------------------------------------------------- 276s Pair | 0.050529 | 0.050529 | 0.050529 | 0.0 | 26.34 276s Neigh | 0.018024 | 0.018024 | 0.018024 | 0.0 | 9.39 276s Comm | 0.0057669 | 0.0057669 | 0.0057669 | 0.0 | 3.01 276s Output | 0.00015041 | 0.00015041 | 0.00015041 | 0.0 | 0.08 276s Modify | 0.10887 | 0.10887 | 0.10887 | 0.0 | 56.75 276s Other | | 0.008508 | | | 4.43 276s 276s Nlocal: 420 ave 420 max 420 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Nghost: 48 ave 48 max 48 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s Neighs: 1124 ave 1124 max 1124 min 276s Histogram: 1 0 0 0 0 0 0 0 0 0 276s 276s Total # of neighbors = 1124 276s Ave neighs/atom = 2.6761905 276s Neighbor list builds = 561 276s Dangerous builds = 0 276s Total wall time: 0:00:00 276s run: OK 276s autopkgtest [18:49:49]: test flow: -----------------------] 276s flow PASS 276s autopkgtest [18:49:49]: test flow: - - - - - - - - - - results - - - - - - - - - - 277s autopkgtest [18:49:50]: test friction: preparing testbed 277s Reading package lists... 277s Building dependency tree... 277s Reading state information... 277s Starting pkgProblemResolver with broken count: 0 277s Starting 2 pkgProblemResolver with broken count: 0 277s Done 278s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 278s autopkgtest [18:49:51]: test friction: [----------------------- 279s LAMMPS (7 Feb 2024 - Update 1) 279s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 279s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 279s using 1 OpenMP thread(s) per MPI task 279s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 279s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 279s 2 by 1 by 1 MPI processor grid 279s Created 750 atoms 279s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 279s create_atoms CPU = 0.000 seconds 279s Created 750 atoms 279s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 279s create_atoms CPU = 0.000 seconds 279s Created 112 atoms 279s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 279s create_atoms CPU = 0.000 seconds 279s Created 112 atoms 279s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 279s create_atoms CPU = 0.000 seconds 279s 750 atoms in group lo 279s 862 atoms in group lo 279s 750 atoms in group hi 279s 862 atoms in group hi 279s 150 atoms in group lo-fixed 279s 150 atoms in group hi-fixed 279s 300 atoms in group boundary 279s 1424 atoms in group mobile 279s Setting atom values ... 279s 150 settings made for type 279s Setting atom values ... 279s 150 settings made for type 279s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 279s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 279s Neighbor list info ... 279s update: every = 1 steps, delay = 5 steps, check = yes 279s max neighbors/atom: 2000, page size: 100000 279s master list distance cutoff = 2.8 279s ghost atom cutoff = 2.8 279s binsize = 1.4, bins = 41 31 1 279s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 279s (1) pair lj/cut, perpetual 279s attributes: half, newton on 279s pair build: half/bin/atomonly/newton 279s stencil: half/bin/2d 279s bin: standard 279s Setting up Verlet run ... 279s Unit style : lj 279s Current step : 0 279s Time step : 0.0025 279s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 279s Step Temp E_pair E_mol TotEng Press Volume 279s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 279s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 279s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 279s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 279s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 279s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 279s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 279s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 279s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 279s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 280s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 280s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 280s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 280s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 280s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 280s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 280s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 280s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 280s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 280s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 280s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 280s Loop time of 1.66469 on 2 procs for 20000 steps with 1724 atoms 280s 280s Performance: 2595074.458 tau/day, 12014.234 timesteps/s, 20.713 Matom-step/s 280s 99.8% CPU use with 2 MPI tasks x 1 OpenMP threads 280s 280s MPI task timing breakdown: 280s Section | min time | avg time | max time |%varavg| %total 280s --------------------------------------------------------------- 280s Pair | 0.93613 | 1.0047 | 1.0734 | 6.8 | 60.36 280s Neigh | 0.075961 | 0.083565 | 0.091169 | 2.6 | 5.02 280s Comm | 0.17107 | 0.24808 | 0.32509 | 15.5 | 14.90 280s Output | 0.00040256 | 0.0011674 | 0.0019321 | 2.2 | 0.07 280s Modify | 0.25237 | 0.26933 | 0.28628 | 3.3 | 16.18 280s Other | | 0.05781 | | | 3.47 280s 280s Nlocal: 862 ave 868 max 856 min 280s Histogram: 1 0 0 0 0 0 0 0 0 1 280s Nghost: 160.5 ave 161 max 160 min 280s Histogram: 1 0 0 0 0 0 0 0 0 1 280s Neighs: 7178.5 ave 7223 max 7134 min 280s Histogram: 1 0 0 0 0 0 0 0 0 1 280s 280s Total # of neighbors = 14357 280s Ave neighs/atom = 8.3277262 280s Neighbor list builds = 716 280s Dangerous builds = 0 280s Total wall time: 0:00:01 281s LAMMPS (7 Feb 2024 - Update 1) 283s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 283s using 1 OpenMP thread(s) per MPI task 283s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 283s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 283s 1 by 1 by 1 MPI processor grid 283s Created 750 atoms 283s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 283s create_atoms CPU = 0.000 seconds 283s Created 750 atoms 283s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 283s create_atoms CPU = 0.000 seconds 283s Created 112 atoms 283s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 283s create_atoms CPU = 0.000 seconds 283s Created 112 atoms 283s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 283s create_atoms CPU = 0.000 seconds 283s 750 atoms in group lo 283s 862 atoms in group lo 283s 750 atoms in group hi 283s 862 atoms in group hi 283s 150 atoms in group lo-fixed 283s 150 atoms in group hi-fixed 283s 300 atoms in group boundary 283s 1424 atoms in group mobile 283s Setting atom values ... 283s 150 settings made for type 283s Setting atom values ... 283s 150 settings made for type 283s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 283s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 283s Neighbor list info ... 283s update: every = 1 steps, delay = 5 steps, check = yes 283s max neighbors/atom: 2000, page size: 100000 283s master list distance cutoff = 2.8 283s ghost atom cutoff = 2.8 283s binsize = 1.4, bins = 41 31 1 283s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 283s (1) pair lj/cut, perpetual 283s attributes: half, newton on 283s pair build: half/bin/atomonly/newton 283s stencil: half/bin/2d 283s bin: standard 283s Setting up Verlet run ... 283s Unit style : lj 283s Current step : 0 283s Time step : 0.0025 283s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 283s Step Temp E_pair E_mol TotEng Press Volume 283s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 283s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 283s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 283s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 283s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 283s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 283s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 283s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 283s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 283s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 283s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 283s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 283s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 283s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 283s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 283s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 283s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 283s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 283s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 284s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 284s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 284s Loop time of 2.82697 on 1 procs for 20000 steps with 1724 atoms 284s 284s Performance: 1528137.334 tau/day, 7074.710 timesteps/s, 12.197 Matom-step/s 284s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 284s 284s MPI task timing breakdown: 284s Section | min time | avg time | max time |%varavg| %total 284s --------------------------------------------------------------- 284s Pair | 2.0442 | 2.0442 | 2.0442 | 0.0 | 72.31 284s Neigh | 0.15683 | 0.15683 | 0.15683 | 0.0 | 5.55 284s Comm | 0.031464 | 0.031464 | 0.031464 | 0.0 | 1.11 284s Output | 0.00053746 | 0.00053746 | 0.00053746 | 0.0 | 0.02 284s Modify | 0.53719 | 0.53719 | 0.53719 | 0.0 | 19.00 284s Other | | 0.05678 | | | 2.01 284s 284s Nlocal: 1724 ave 1724 max 1724 min 284s Histogram: 1 0 0 0 0 0 0 0 0 0 284s Nghost: 144 ave 144 max 144 min 284s Histogram: 1 0 0 0 0 0 0 0 0 0 284s Neighs: 14364 ave 14364 max 14364 min 284s Histogram: 1 0 0 0 0 0 0 0 0 0 284s 284s Total # of neighbors = 14364 284s Ave neighs/atom = 8.3317865 284s Neighbor list builds = 714 284s Dangerous builds = 0 284s Total wall time: 0:00:02 284s run: OK 284s autopkgtest [18:49:57]: test friction: -----------------------] 284s friction PASS 284s autopkgtest [18:49:57]: test friction: - - - - - - - - - - results - - - - - - - - - - 285s autopkgtest [18:49:58]: test hugo: preparing testbed 285s Reading package lists... 285s Building dependency tree... 285s Reading state information... 285s Starting pkgProblemResolver with broken count: 0 285s Starting 2 pkgProblemResolver with broken count: 0 285s Done 285s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 286s autopkgtest [18:49:59]: test hugo: [----------------------- 287s LAMMPS (7 Feb 2024 - Update 1) 287s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 287s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 287s using 1 OpenMP thread(s) per MPI task 287s Lattice spacing in x,y,z = 1.4142135 2 2 287s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 287s 1 by 1 by 2 MPI processor grid 287s Created 1000 atoms 287s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 287s create_atoms CPU = 0.001 seconds 287s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 287s Neighbor list info ... 287s update: every = 1 steps, delay = 0 steps, check = yes 287s max neighbors/atom: 2000, page size: 100000 287s master list distance cutoff = 1.8475372 287s ghost atom cutoff = 1.8475372 287s binsize = 0.92376862, bins = 8 11 11 287s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 287s (1) pair lj/cubic, perpetual 287s attributes: half, newton on 287s pair build: half/bin/atomonly/newton 287s stencil: half/bin/3d 287s bin: standard 287s Setting up cg style minimization ... 287s Unit style : lj 287s Current step : 0 287s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 287s (src/min.cpp:219) 287s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 287s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 287s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 287s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 287s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 287s Loop time of 0.0194445 on 2 procs for 134 steps with 1000 atoms 287s 287s 97.9% CPU use with 2 MPI tasks x 1 OpenMP threads 287s 287s Minimization stats: 287s Stopping criterion = force tolerance 287s Energy initial, next-to-last, final = 287s -6.29375358358574 -6.33442531515467 -6.33442531515467 287s Force two-norm initial, final = 3395.2895 5.5900884e-10 287s Force max component initial, final = 1960.2713 3.2516979e-10 287s Final line search alpha, max atom move = 1 3.2516979e-10 287s Iterations, force evaluations = 134 137 287s 287s MPI task timing breakdown: 287s Section | min time | avg time | max time |%varavg| %total 287s --------------------------------------------------------------- 287s Pair | 0.010443 | 0.011443 | 0.012444 | 0.9 | 58.85 287s Neigh | 0.00030604 | 0.00033907 | 0.00037211 | 0.0 | 1.74 287s Comm | 0.0031617 | 0.0041506 | 0.0051396 | 1.5 | 21.35 287s Output | 1.1367e-05 | 2.2734e-05 | 3.4101e-05 | 0.0 | 0.12 287s Modify | 0 | 0 | 0 | 0.0 | 0.00 287s Other | | 0.003489 | | | 17.94 287s 287s Nlocal: 500 ave 550 max 450 min 287s Histogram: 1 0 0 0 0 0 0 0 0 1 287s Nghost: 1214 ave 1264 max 1164 min 287s Histogram: 1 0 0 0 0 0 0 0 0 1 287s Neighs: 10500 ave 11550 max 9450 min 287s Histogram: 1 0 0 0 0 0 0 0 0 1 287s 287s Total # of neighbors = 21000 287s Ave neighs/atom = 21 287s Neighbor list builds = 1 287s Dangerous builds = 0 287s System init for write_restart ... 287s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 287s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 287s using 1 OpenMP thread(s) per MPI task 287s Reading restart file ... 287s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 287s restoring atom style atomic from restart 287s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 287s 1 by 1 by 2 MPI processor grid 287s restoring pair style lj/cubic from restart 287s 1000 atoms 287s read_restart CPU = 0.001 seconds 287s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 287s Neighbor list info ... 287s update: every = 1 steps, delay = 0 steps, check = yes 287s max neighbors/atom: 2000, page size: 100000 287s master list distance cutoff = 1.7475372 287s ghost atom cutoff = 1.7475372 287s binsize = 0.87376862, bins = 8 12 12 287s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 287s (1) pair lj/cubic, perpetual 287s attributes: half, newton on 287s pair build: half/bin/atomonly/newton 287s stencil: half/bin/3d 287s bin: standard 287s Setting up Verlet run ... 287s Unit style : lj 287s Current step : 0 287s Time step : 0.001 287s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 287s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 287s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 287s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 287s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 287s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 287s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 287s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 288s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 288s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 288s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 288s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 288s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 288s Loop time of 1.61702 on 2 procs for 10000 steps with 1000 atoms 288s 288s Performance: 534317.404 tau/day, 6184.229 timesteps/s, 6.184 Matom-step/s 288s 92.8% CPU use with 2 MPI tasks x 1 OpenMP threads 288s 288s MPI task timing breakdown: 288s Section | min time | avg time | max time |%varavg| %total 288s --------------------------------------------------------------- 288s Pair | 0.91602 | 0.94635 | 0.97668 | 3.1 | 58.52 288s Neigh | 0.072775 | 0.07578 | 0.078786 | 1.1 | 4.69 288s Comm | 0.24778 | 0.28114 | 0.31451 | 6.3 | 17.39 288s Output | 0.0003583 | 0.00050582 | 0.00065335 | 0.0 | 0.03 288s Modify | 0.28519 | 0.28704 | 0.28889 | 0.3 | 17.75 288s Other | | 0.0262 | | | 1.62 288s 288s Nlocal: 500 ave 510 max 490 min 288s Histogram: 1 0 0 0 0 0 0 0 0 1 288s Nghost: 1351.5 ave 1357 max 1346 min 288s Histogram: 1 0 0 0 0 0 0 0 0 1 288s Neighs: 10160.5 ave 10780 max 9541 min 288s Histogram: 1 0 0 0 0 0 0 0 0 1 288s 288s Total # of neighbors = 20321 288s Ave neighs/atom = 20.321 288s Neighbor list builds = 194 288s Dangerous builds = 0 288s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 288s using 1 OpenMP thread(s) per MPI task 288s Reading restart file ... 288s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 288s restoring atom style atomic from restart 288s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 288s 1 by 1 by 2 MPI processor grid 288s restoring pair style lj/cubic from restart 288s 1000 atoms 288s read_restart CPU = 0.001 seconds 288s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 288s Neighbor list info ... 288s update: every = 1 steps, delay = 0 steps, check = yes 288s max neighbors/atom: 2000, page size: 100000 288s master list distance cutoff = 1.7475372 288s ghost atom cutoff = 1.7475372 288s binsize = 0.87376862, bins = 8 12 12 288s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 288s (1) pair lj/cubic, perpetual 288s attributes: half, newton on 288s pair build: half/bin/atomonly/newton 288s stencil: half/bin/3d 288s bin: standard 288s Setting up Verlet run ... 288s Unit style : lj 288s Current step : 0 288s Time step : 0.001 288s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 288s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 288s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 288s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 289s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 289s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 289s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 289s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 289s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 289s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 289s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 290s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 290s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 290s Loop time of 1.45097 on 2 procs for 10000 steps with 1000 atoms 290s 290s Performance: 595462.351 tau/day, 6891.925 timesteps/s, 6.892 Matom-step/s 290s 90.1% CPU use with 2 MPI tasks x 1 OpenMP threads 290s 290s MPI task timing breakdown: 290s Section | min time | avg time | max time |%varavg| %total 290s --------------------------------------------------------------- 290s Pair | 0.82131 | 0.82265 | 0.82399 | 0.1 | 56.70 290s Neigh | 0.0039063 | 0.0039198 | 0.0039332 | 0.0 | 0.27 290s Comm | 0.28902 | 0.28981 | 0.29059 | 0.1 | 19.97 290s Output | 0.00036457 | 0.00086425 | 0.0013639 | 0.0 | 0.06 290s Modify | 0.29862 | 0.29985 | 0.30109 | 0.2 | 20.67 290s Other | | 0.03388 | | | 2.34 290s 290s Nlocal: 500 ave 503 max 497 min 290s Histogram: 1 0 0 0 0 0 0 0 0 1 290s Nghost: 1214 ave 1217 max 1211 min 290s Histogram: 1 0 0 0 0 0 0 0 0 1 290s Neighs: 10500 ave 10560 max 10440 min 290s Histogram: 1 0 0 0 0 0 0 0 0 1 290s 290s Total # of neighbors = 21000 290s Ave neighs/atom = 21 290s Neighbor list builds = 10 290s Dangerous builds = 0 290s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 290s using 1 OpenMP thread(s) per MPI task 290s Reading restart file ... 290s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 290s restoring atom style atomic from restart 290s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 290s 1 by 1 by 2 MPI processor grid 290s restoring pair style lj/cubic from restart 290s 1000 atoms 290s read_restart CPU = 0.001 seconds 290s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 290s Neighbor list info ... 290s update: every = 1 steps, delay = 0 steps, check = yes 290s max neighbors/atom: 2000, page size: 100000 290s master list distance cutoff = 1.7475372 290s ghost atom cutoff = 1.7475372 290s binsize = 0.87376862, bins = 8 12 12 290s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 290s (1) pair lj/cubic, perpetual 290s attributes: half, newton on 290s pair build: half/bin/atomonly/newton 290s stencil: half/bin/3d 290s bin: standard 290s Setting up Verlet run ... 290s Unit style : lj 290s Current step : 0 290s Time step : 0.001 290s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 290s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 290s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 290s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 290s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 290s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 290s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 290s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 291s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 291s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 291s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 291s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 291s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 291s Loop time of 1.54491 on 2 procs for 10000 steps with 1000 atoms 291s 291s Performance: 559256.564 tau/day, 6472.877 timesteps/s, 6.473 Matom-step/s 291s 90.5% CPU use with 2 MPI tasks x 1 OpenMP threads 291s 291s MPI task timing breakdown: 291s Section | min time | avg time | max time |%varavg| %total 291s --------------------------------------------------------------- 291s Pair | 0.82639 | 0.83487 | 0.84334 | 0.9 | 54.04 291s Neigh | 0.035993 | 0.036127 | 0.036261 | 0.1 | 2.34 291s Comm | 0.31613 | 0.32422 | 0.33231 | 1.4 | 20.99 291s Output | 0.00037544 | 0.0013711 | 0.0023668 | 2.7 | 0.09 291s Modify | 0.30717 | 0.30802 | 0.30888 | 0.2 | 19.94 291s Other | | 0.0403 | | | 2.61 291s 291s Nlocal: 500 ave 503 max 497 min 291s Histogram: 1 0 0 0 0 0 0 0 0 1 291s Nghost: 1217.5 ave 1219 max 1216 min 291s Histogram: 1 0 0 0 0 0 0 0 0 1 291s Neighs: 10291 ave 10353 max 10229 min 291s Histogram: 1 0 0 0 0 0 0 0 0 1 291s 291s Total # of neighbors = 20582 291s Ave neighs/atom = 20.582 291s Neighbor list builds = 89 291s Dangerous builds = 0 291s Total wall time: 0:00:04 292s LAMMPS (7 Feb 2024 - Update 1) 292s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 292s using 1 OpenMP thread(s) per MPI task 292s Lattice spacing in x,y,z = 1.4142135 2 2 292s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 292s 1 by 1 by 1 MPI processor grid 292s Created 1000 atoms 292s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 292s create_atoms CPU = 0.000 seconds 292s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 292s Neighbor list info ... 292s update: every = 1 steps, delay = 0 steps, check = yes 292s max neighbors/atom: 2000, page size: 100000 292s master list distance cutoff = 1.8475372 292s ghost atom cutoff = 1.8475372 292s binsize = 0.92376862, bins = 8 11 11 292s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 292s (1) pair lj/cubic, perpetual 292s attributes: half, newton on 292s pair build: half/bin/atomonly/newton 292s stencil: half/bin/3d 292s bin: standard 292s Setting up cg style minimization ... 292s Unit style : lj 292s Current step : 0 292s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 292s (src/min.cpp:219) 292s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 292s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 292s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 292s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 292s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 292s Loop time of 0.029051 on 1 procs for 134 steps with 1000 atoms 292s 292s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 292s 292s Minimization stats: 292s Stopping criterion = force tolerance 292s Energy initial, next-to-last, final = 292s -6.29375358358557 -6.33442531515503 -6.33442531515503 292s Force two-norm initial, final = 3395.2895 5.5740327e-10 292s Force max component initial, final = 1960.2713 3.2730334e-10 292s Final line search alpha, max atom move = 1 3.2730334e-10 292s Iterations, force evaluations = 134 137 292s 292s MPI task timing breakdown: 292s Section | min time | avg time | max time |%varavg| %total 292s --------------------------------------------------------------- 292s Pair | 0.022234 | 0.022234 | 0.022234 | 0.0 | 76.53 292s Neigh | 0.00058796 | 0.00058796 | 0.00058796 | 0.0 | 2.02 292s Comm | 0.0015504 | 0.0015504 | 0.0015504 | 0.0 | 5.34 292s Output | 1.347e-05 | 1.347e-05 | 1.347e-05 | 0.0 | 0.05 292s Modify | 0 | 0 | 0 | 0.0 | 0.00 292s Other | | 0.004666 | | | 16.06 292s 292s Nlocal: 1000 ave 1000 max 1000 min 292s Histogram: 1 0 0 0 0 0 0 0 0 0 292s Nghost: 1724 ave 1724 max 1724 min 292s Histogram: 1 0 0 0 0 0 0 0 0 0 292s Neighs: 21000 ave 21000 max 21000 min 292s Histogram: 1 0 0 0 0 0 0 0 0 0 292s 292s Total # of neighbors = 21000 292s Ave neighs/atom = 21 292s Neighbor list builds = 1 292s Dangerous builds = 0 292s System init for write_restart ... 292s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 292s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 292s using 1 OpenMP thread(s) per MPI task 292s Reading restart file ... 292s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 292s restoring atom style atomic from restart 292s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 292s 1 by 1 by 1 MPI processor grid 292s restoring pair style lj/cubic from restart 292s 1000 atoms 292s read_restart CPU = 0.000 seconds 292s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 292s Neighbor list info ... 292s update: every = 1 steps, delay = 0 steps, check = yes 292s max neighbors/atom: 2000, page size: 100000 292s master list distance cutoff = 1.7475372 292s ghost atom cutoff = 1.7475372 292s binsize = 0.87376862, bins = 8 12 12 292s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 294s (1) pair lj/cubic, perpetual 294s attributes: half, newton on 294s pair build: half/bin/atomonly/newton 294s stencil: half/bin/3d 294s bin: standard 294s Setting up Verlet run ... 294s Unit style : lj 294s Current step : 0 294s Time step : 0.001 294s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 294s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 294s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 294s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 294s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 294s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 294s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 294s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 294s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 294s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 294s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 294s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 294s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 294s Loop time of 2.64608 on 1 procs for 10000 steps with 1000 atoms 294s 294s Performance: 326520.207 tau/day, 3779.169 timesteps/s, 3.779 Matom-step/s 294s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 294s 294s MPI task timing breakdown: 294s Section | min time | avg time | max time |%varavg| %total 294s --------------------------------------------------------------- 294s Pair | 1.8835 | 1.8835 | 1.8835 | 0.0 | 71.18 294s Neigh | 0.14492 | 0.14492 | 0.14492 | 0.0 | 5.48 294s Comm | 0.12539 | 0.12539 | 0.12539 | 0.0 | 4.74 294s Output | 0.0003747 | 0.0003747 | 0.0003747 | 0.0 | 0.01 294s Modify | 0.4703 | 0.4703 | 0.4703 | 0.0 | 17.77 294s Other | | 0.02155 | | | 0.81 294s 294s Nlocal: 1000 ave 1000 max 1000 min 294s Histogram: 1 0 0 0 0 0 0 0 0 0 294s Nghost: 1886 ave 1886 max 1886 min 294s Histogram: 1 0 0 0 0 0 0 0 0 0 294s Neighs: 20874 ave 20874 max 20874 min 294s Histogram: 1 0 0 0 0 0 0 0 0 0 294s 294s Total # of neighbors = 20874 294s Ave neighs/atom = 20.874 294s Neighbor list builds = 188 294s Dangerous builds = 0 294s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 294s using 1 OpenMP thread(s) per MPI task 294s Reading restart file ... 294s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 294s restoring atom style atomic from restart 294s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 294s 1 by 1 by 1 MPI processor grid 294s restoring pair style lj/cubic from restart 294s 1000 atoms 294s read_restart CPU = 0.000 seconds 294s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 294s Neighbor list info ... 296s update: every = 1 steps, delay = 0 steps, check = yes 296s max neighbors/atom: 2000, page size: 100000 296s master list distance cutoff = 1.7475372 296s ghost atom cutoff = 1.7475372 296s binsize = 0.87376862, bins = 8 12 12 296s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 296s (1) pair lj/cubic, perpetual 296s attributes: half, newton on 296s pair build: half/bin/atomonly/newton 296s stencil: half/bin/3d 296s bin: standard 296s Setting up Verlet run ... 296s Unit style : lj 296s Current step : 0 296s Time step : 0.001 296s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 296s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 296s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 296s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 296s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 296s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 296s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 296s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 296s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 296s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 296s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 296s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 296s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 296s Loop time of 2.19601 on 1 procs for 10000 steps with 1000 atoms 296s 296s Performance: 393440.378 tau/day, 4553.708 timesteps/s, 4.554 Matom-step/s 296s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 296s 296s MPI task timing breakdown: 296s Section | min time | avg time | max time |%varavg| %total 296s --------------------------------------------------------------- 296s Pair | 1.587 | 1.587 | 1.587 | 0.0 | 72.27 296s Neigh | 0.0084801 | 0.0084801 | 0.0084801 | 0.0 | 0.39 296s Comm | 0.1116 | 0.1116 | 0.1116 | 0.0 | 5.08 296s Output | 0.00037302 | 0.00037302 | 0.00037302 | 0.0 | 0.02 296s Modify | 0.46856 | 0.46856 | 0.46856 | 0.0 | 21.34 296s Other | | 0.02002 | | | 0.91 296s 296s Nlocal: 1000 ave 1000 max 1000 min 296s Histogram: 1 0 0 0 0 0 0 0 0 0 296s Nghost: 1724 ave 1724 max 1724 min 296s Histogram: 1 0 0 0 0 0 0 0 0 0 296s Neighs: 21000 ave 21000 max 21000 min 296s Histogram: 1 0 0 0 0 0 0 0 0 0 296s 296s Total # of neighbors = 21000 296s Ave neighs/atom = 21 296s Neighbor list builds = 11 296s Dangerous builds = 0 296s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 296s using 1 OpenMP thread(s) per MPI task 296s Reading restart file ... 296s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 296s restoring atom style atomic from restart 299s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 299s 1 by 1 by 1 MPI processor grid 299s restoring pair style lj/cubic from restart 299s 1000 atoms 299s read_restart CPU = 0.000 seconds 299s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 299s Neighbor list info ... 299s update: every = 1 steps, delay = 0 steps, check = yes 299s max neighbors/atom: 2000, page size: 100000 299s master list distance cutoff = 1.7475372 299s ghost atom cutoff = 1.7475372 299s binsize = 0.87376862, bins = 8 12 12 299s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 299s (1) pair lj/cubic, perpetual 299s attributes: half, newton on 299s pair build: half/bin/atomonly/newton 299s stencil: half/bin/3d 299s bin: standard 299s Setting up Verlet run ... 299s Unit style : lj 299s Current step : 0 299s Time step : 0.001 299s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 299s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 299s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 299s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 299s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 299s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 299s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 299s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 299s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 299s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 299s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 299s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 299s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 299s Loop time of 2.32353 on 1 procs for 10000 steps with 1000 atoms 299s 299s Performance: 371848.093 tau/day, 4303.797 timesteps/s, 4.304 Matom-step/s 299s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 299s 299s MPI task timing breakdown: 299s Section | min time | avg time | max time |%varavg| %total 299s --------------------------------------------------------------- 299s Pair | 1.6413 | 1.6413 | 1.6413 | 0.0 | 70.64 299s Neigh | 0.074932 | 0.074932 | 0.074932 | 0.0 | 3.22 299s Comm | 0.11629 | 0.11629 | 0.11629 | 0.0 | 5.00 299s Output | 0.00037964 | 0.00037964 | 0.00037964 | 0.0 | 0.02 299s Modify | 0.46981 | 0.46981 | 0.46981 | 0.0 | 20.22 299s Other | | 0.02084 | | | 0.90 299s 299s Nlocal: 1000 ave 1000 max 1000 min 299s Histogram: 1 0 0 0 0 0 0 0 0 0 299s Nghost: 1724 ave 1724 max 1724 min 299s Histogram: 1 0 0 0 0 0 0 0 0 0 299s Neighs: 20654 ave 20654 max 20654 min 299s Histogram: 1 0 0 0 0 0 0 0 0 0 299s 299s Total # of neighbors = 20654 299s Ave neighs/atom = 20.654 299s Neighbor list builds = 94 299s Dangerous builds = 0 299s Total wall time: 0:00:07 299s run: OK 299s autopkgtest [18:50:12]: test hugo: -----------------------] 300s hugo PASS 300s autopkgtest [18:50:13]: test hugo: - - - - - - - - - - results - - - - - - - - - - 300s autopkgtest [18:50:13]: test command1: preparing testbed 624s autopkgtest [18:55:37]: testbed dpkg architecture: amd64 624s autopkgtest [18:55:37]: testbed apt version: 3.0.0 624s autopkgtest [18:55:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 625s autopkgtest [18:55:38]: testbed release detected to be: questing 625s autopkgtest [18:55:38]: updating testbed package index (apt update) 625s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 625s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 625s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 626s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 626s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1442 kB] 626s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 626s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [149 kB] 626s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [203 kB] 626s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [146 kB] 626s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1424 kB] 626s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [576 kB] 626s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.6 kB] 626s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 626s Fetched 4155 kB in 1s (6755 kB/s) 627s Reading package lists... 627s autopkgtest [18:55:40]: upgrading testbed (apt dist-upgrade and autopurge) 627s Reading package lists... 627s Building dependency tree... 627s Reading state information... 628s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 628s Starting 2 pkgProblemResolver with broken count: 0 628s Done 628s Entering ResolveByKeep 628s 628s Calculating upgrade... 628s The following packages will be upgraded: 628s libperl5.40 libsepol2 perl perl-base perl-modules-5.40 628s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 628s Need to get 10.5 MB of archives. 628s After this operation, 8192 B of additional disk space will be used. 628s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 629s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl amd64 5.40.1-3 [262 kB] 629s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 629s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 629s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libsepol2 amd64 3.8.1-1 [327 kB] 629s Fetched 10.5 MB in 1s (19.3 MB/s) 629s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 629s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 629s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 629s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 629s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 629s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 629s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 629s Setting up perl-base (5.40.1-3) ... 629s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 629s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 629s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 630s Preparing to unpack .../libsepol2_3.8.1-1_amd64.deb ... 630s Unpacking libsepol2:amd64 (3.8.1-1) over (3.7-1) ... 630s Setting up libsepol2:amd64 (3.8.1-1) ... 630s Setting up perl-modules-5.40 (5.40.1-3) ... 630s Setting up libperl5.40:amd64 (5.40.1-3) ... 630s Setting up perl (5.40.1-3) ... 630s Processing triggers for man-db (2.13.0-1) ... 630s Processing triggers for libc-bin (2.41-6ubuntu1) ... 630s Reading package lists... 631s Building dependency tree... 631s Reading state information... 631s Starting pkgProblemResolver with broken count: 0 631s Starting 2 pkgProblemResolver with broken count: 0 631s Done 631s Solving dependencies... 631s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 633s Reading package lists... 633s Building dependency tree... 633s Reading state information... 634s Starting pkgProblemResolver with broken count: 0 634s Starting 2 pkgProblemResolver with broken count: 0 634s Done 634s The following NEW packages will be installed: 634s autoconf automake autotools-dev cpp-14 cpp-14-x86-64-linux-gnu 634s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 634s gcc-14-x86-64-linux-gnu gfortran-14 gfortran-14-x86-64-linux-gnu libaec0 634s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 634s libdouble-conversion3 libdrm-intel1 libevent-2.1-7t64 libevent-dev 634s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 634s libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-14-dev 634s libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 634s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 634s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev 634s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs-dev libisl23 634s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 634s libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 634s libllvm17t64 liblsan0 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf22 634s libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev 634s libopenmpi40 libpciaccess0 libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf6 634s libproj25 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1t64 634s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 634s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 634s libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 634s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 634s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 634s libxshmfence1 libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin 634s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 634s python3-lammps x11-common zlib1g-dev 634s 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. 634s Need to get 202 MB of archives. 634s After this operation, 793 MB of additional disk space will be used. 634s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 m4 amd64 1.4.19-7 [263 kB] 634s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 634s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 autotools-dev all 20220109.1 [44.9 kB] 634s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 634s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 634s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 634s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 634s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 634s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 634s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 634s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 634s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB] 634s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 634s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 634s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 635s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 635s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 635s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 635s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 635s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 635s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 635s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 635s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 635s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 635s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB] 635s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB] 635s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB] 635s Get:28 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 635s Get:29 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 636s Get:30 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 636s Get:31 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 636s Get:32 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 636s Get:33 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 636s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 636s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 636s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 636s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 636s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 636s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 636s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 636s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 636s Get:42 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 636s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 636s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 636s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 636s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [64.2 kB] 636s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 636s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [15.7 kB] 636s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-dev amd64 2.1.12-stable-10 [274 kB] 636s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 636s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 636s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 636s Get:53 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 636s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 636s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 636s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 636s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 636s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 636s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 636s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 636s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 636s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 636s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 636s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 636s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 636s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 636s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 636s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 636s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 636s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 636s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 636s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 636s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 636s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 636s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 636s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 636s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 636s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 636s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 636s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 636s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 636s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 636s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 636s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 637s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 637s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 637s Get:87 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 637s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 637s Get:89 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 637s Get:90 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 637s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB] 637s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 637s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 637s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 637s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 637s Get:96 http://ftpmaster.internal/ubuntu questing/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 637s Get:97 http://ftpmaster.internal/ubuntu questing/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 637s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 637s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 637s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB] 637s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 637s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 637s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 637s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 637s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 637s Get:106 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 637s Get:107 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 637s Get:108 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 637s Get:109 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 637s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 637s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 637s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 637s Get:113 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 637s Get:114 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 637s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 637s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 637s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB] 638s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 liblammps0t64 amd64 20240207+dfsg-3build3 [8393 kB] 638s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 638s Get:120 http://ftpmaster.internal/ubuntu questing/main amd64 libnl-3-dev amd64 3.7.0-2 [113 kB] 638s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libnl-route-3-dev amd64 3.7.0-2 [225 kB] 638s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libibverbs-dev amd64 56.0-4ubuntu1 [687 kB] 638s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libnuma-dev amd64 2.0.18-1build1 [37.0 kB] 638s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 638s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libltdl-dev amd64 2.5.4-4 [176 kB] 638s Get:126 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-dev amd64 2.12.0-1 [290 kB] 638s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 638s Get:128 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix-dev amd64 5.0.6-5 [4060 kB] 638s Get:129 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 638s Get:130 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi-dev amd64 5.0.7-1 [1085 kB] 638s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-dev amd64 1.18 [3320 B] 638s Get:132 http://ftpmaster.internal/ubuntu questing/universe amd64 liblammps-dev amd64 20240207+dfsg-3build3 [112 kB] 638s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 638s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lammps amd64 20240207+dfsg-3build3 [70.5 kB] 638s Fetched 202 MB in 4s (48.2 MB/s) 638s Selecting previously unselected package m4. 638s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 638s Preparing to unpack .../000-m4_1.4.19-7_amd64.deb ... 638s Unpacking m4 (1.4.19-7) ... 638s Selecting previously unselected package autoconf. 638s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 638s Unpacking autoconf (2.72-3ubuntu1) ... 638s Selecting previously unselected package autotools-dev. 638s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 638s Unpacking autotools-dev (20220109.1) ... 638s Selecting previously unselected package automake. 638s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 638s Unpacking automake (1:1.17-3ubuntu1) ... 639s Selecting previously unselected package libisl23:amd64. 639s Preparing to unpack .../004-libisl23_0.27-1_amd64.deb ... 639s Unpacking libisl23:amd64 (0.27-1) ... 639s Selecting previously unselected package libmpc3:amd64. 639s Preparing to unpack .../005-libmpc3_1.3.1-1build2_amd64.deb ... 639s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 639s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 639s Preparing to unpack .../006-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 639s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 639s Selecting previously unselected package cpp-14. 639s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 639s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 639s Selecting previously unselected package fonts-dejavu-mono. 639s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 639s Unpacking fonts-dejavu-mono (2.37-8) ... 639s Selecting previously unselected package fonts-dejavu-core. 639s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 639s Unpacking fonts-dejavu-core (2.37-8) ... 639s Selecting previously unselected package fontconfig-config. 639s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 639s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 639s Selecting previously unselected package libcc1-0:amd64. 639s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libgomp1:amd64. 639s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libitm1:amd64. 639s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libasan8:amd64. 639s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package liblsan0:amd64. 639s Preparing to unpack .../015-liblsan0_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libtsan2:amd64. 639s Preparing to unpack .../016-libtsan2_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libubsan1:amd64. 639s Preparing to unpack .../017-libubsan1_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libhwasan0:amd64. 639s Preparing to unpack .../018-libhwasan0_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libhwasan0:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libquadmath0:amd64. 639s Preparing to unpack .../019-libquadmath0_15-20250404-0ubuntu1_amd64.deb ... 639s Unpacking libquadmath0:amd64 (15-20250404-0ubuntu1) ... 639s Selecting previously unselected package libgcc-14-dev:amd64. 639s Preparing to unpack .../020-libgcc-14-dev_14.2.0-19ubuntu2_amd64.deb ... 639s Unpacking libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 639s Selecting previously unselected package gcc-14-x86-64-linux-gnu. 639s Preparing to unpack .../021-gcc-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 639s Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 640s Selecting previously unselected package gcc-14. 640s Preparing to unpack .../022-gcc-14_14.2.0-19ubuntu2_amd64.deb ... 640s Unpacking gcc-14 (14.2.0-19ubuntu2) ... 640s Selecting previously unselected package libgfortran5:amd64. 640s Preparing to unpack .../023-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 640s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 640s Selecting previously unselected package libgfortran-14-dev:amd64. 640s Preparing to unpack .../024-libgfortran-14-dev_14.2.0-19ubuntu2_amd64.deb ... 640s Unpacking libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 640s Selecting previously unselected package gfortran-14-x86-64-linux-gnu. 640s Preparing to unpack .../025-gfortran-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 640s Unpacking gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 640s Selecting previously unselected package gfortran-14. 640s Preparing to unpack .../026-gfortran-14_14.2.0-19ubuntu2_amd64.deb ... 640s Unpacking gfortran-14 (14.2.0-19ubuntu2) ... 640s Selecting previously unselected package libaec0:amd64. 640s Preparing to unpack .../027-libaec0_1.1.3-1_amd64.deb ... 640s Unpacking libaec0:amd64 (1.1.3-1) ... 640s Selecting previously unselected package libllvm17t64:amd64. 640s Preparing 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unpack .../048-libevent-dev_2.1.12-stable-10_amd64.deb ... 641s Unpacking libevent-dev (2.1.12-stable-10) ... 641s Selecting previously unselected package libpsm-infinipath1. 641s Preparing to unpack .../049-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ... 641s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 641s Selecting previously unselected package libpsm2-2. 641s Preparing to unpack .../050-libpsm2-2_11.2.185-2.1_amd64.deb ... 641s Unpacking libpsm2-2 (11.2.185-2.1) ... 641s Selecting previously unselected package librdmacm1t64:amd64. 641s Preparing to unpack .../051-librdmacm1t64_56.0-4ubuntu1_amd64.deb ... 641s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ... 641s Selecting previously unselected package libfabric1:amd64. 641s Preparing to unpack .../052-libfabric1_1.17.0-3.1_amd64.deb ... 641s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 641s Selecting previously unselected package libfftw3-double3:amd64. 641s Preparing to unpack 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unpack .../074-libsz2_1.1.3-1_amd64.deb ... 641s Unpacking libsz2:amd64 (1.1.3-1) ... 642s Selecting previously unselected package libhdf5-310:amd64. 642s Preparing to unpack .../075-libhdf5-310_1.14.5+repack-3_amd64.deb ... 642s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 642s Selecting previously unselected package libhdf5-hl-310:amd64. 642s Preparing to unpack .../076-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 642s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 642s Selecting previously unselected package libhwloc15:amd64. 642s Preparing to unpack .../077-libhwloc15_2.12.0-1_amd64.deb ... 642s Unpacking libhwloc15:amd64 (2.12.0-1) ... 642s Selecting previously unselected package libjpeg-turbo8:amd64. 642s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 642s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 642s Selecting previously unselected package libjpeg8:amd64. 642s Preparing to unpack .../079-libjpeg8_8c-2ubuntu11_amd64.deb ... 642s 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unselected package libnetcdf22:amd64. 642s Preparing to unpack .../085-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 642s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 642s Selecting previously unselected package libmunge2:amd64. 642s Preparing to unpack .../086-libmunge2_0.5.16-1_amd64.deb ... 642s Unpacking libmunge2:amd64 (0.5.16-1) ... 642s Selecting previously unselected package libxnvctrl0:amd64. 642s Preparing to unpack .../087-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 642s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 642s Selecting previously unselected package ocl-icd-libopencl1:amd64. 642s Preparing to unpack .../088-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 642s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 642s Selecting previously unselected package libhwloc-plugins:amd64. 642s Preparing to unpack .../089-libhwloc-plugins_2.12.0-1_amd64.deb ... 642s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ... 642s Selecting previously unselected package 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(1.2.0~alpha1+dfsg-6) ... 643s Selecting previously unselected package libxft2:amd64. 643s Preparing to unpack .../112-libxft2_2.3.6-1build1_amd64.deb ... 643s Unpacking libxft2:amd64 (2.3.6-1build1) ... 643s Selecting previously unselected package x11-common. 643s Preparing to unpack .../113-x11-common_1%3a7.7+23ubuntu4_all.deb ... 643s Unpacking x11-common (1:7.7+23ubuntu4) ... 643s Selecting previously unselected package libxss1:amd64. 643s Preparing to unpack .../114-libxss1_1%3a1.2.3-1build3_amd64.deb ... 643s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 643s Selecting previously unselected package libtk8.6:amd64. 643s Preparing to unpack .../115-libtk8.6_8.6.16-1_amd64.deb ... 643s Unpacking libtk8.6:amd64 (8.6.16-1) ... 643s Selecting previously unselected package libvtk9.3:amd64. 643s Preparing to unpack .../116-libvtk9.3_9.3.0+dfsg1-4ubuntu1_amd64.deb ... 643s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 643s Selecting previously unselected package liblammps0t64:amd64. 643s Preparing to unpack .../117-liblammps0t64_20240207+dfsg-3build3_amd64.deb ... 643s Unpacking liblammps0t64:amd64 (20240207+dfsg-3build3) ... 643s Selecting previously unselected package openmpi-common. 643s Preparing to unpack .../118-openmpi-common_5.0.7-1_all.deb ... 643s Unpacking openmpi-common (5.0.7-1) ... 643s Selecting previously unselected package libnl-3-dev:amd64. 643s Preparing to unpack .../119-libnl-3-dev_3.7.0-2_amd64.deb ... 643s Unpacking libnl-3-dev:amd64 (3.7.0-2) ... 643s Selecting previously unselected package libnl-route-3-dev:amd64. 643s Preparing to unpack .../120-libnl-route-3-dev_3.7.0-2_amd64.deb ... 643s Unpacking libnl-route-3-dev:amd64 (3.7.0-2) ... 643s Selecting previously unselected package libibverbs-dev:amd64. 643s Preparing to unpack .../121-libibverbs-dev_56.0-4ubuntu1_amd64.deb ... 643s Unpacking libibverbs-dev:amd64 (56.0-4ubuntu1) ... 643s Selecting previously unselected package libnuma-dev:amd64. 643s Preparing to unpack .../122-libnuma-dev_2.0.18-1build1_amd64.deb ... 643s Unpacking libnuma-dev:amd64 (2.0.18-1build1) ... 643s Selecting previously unselected package libltdl7:amd64. 643s Preparing to unpack .../123-libltdl7_2.5.4-4_amd64.deb ... 643s Unpacking libltdl7:amd64 (2.5.4-4) ... 643s Selecting previously unselected package libltdl-dev:amd64. 643s Preparing to unpack .../124-libltdl-dev_2.5.4-4_amd64.deb ... 643s Unpacking libltdl-dev:amd64 (2.5.4-4) ... 643s Selecting previously unselected package libhwloc-dev:amd64. 643s Preparing to unpack .../125-libhwloc-dev_2.12.0-1_amd64.deb ... 643s Unpacking libhwloc-dev:amd64 (2.12.0-1) ... 643s Selecting previously unselected package zlib1g-dev:amd64. 643s Preparing to unpack .../126-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 643s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 643s Selecting previously unselected package libpmix-dev:amd64. 643s Preparing to unpack .../127-libpmix-dev_5.0.6-5_amd64.deb ... 643s Unpacking libpmix-dev:amd64 (5.0.6-5) ... 644s Selecting previously unselected package openmpi-bin. 644s Preparing to unpack .../128-openmpi-bin_5.0.7-1_amd64.deb ... 644s Unpacking openmpi-bin (5.0.7-1) ... 644s Selecting previously unselected package libopenmpi-dev:amd64. 644s Preparing to unpack .../129-libopenmpi-dev_5.0.7-1_amd64.deb ... 644s Unpacking libopenmpi-dev:amd64 (5.0.7-1) ... 644s Selecting previously unselected package mpi-default-dev. 644s Preparing to unpack .../130-mpi-default-dev_1.18_amd64.deb ... 644s Unpacking mpi-default-dev (1.18) ... 644s Selecting previously unselected package liblammps-dev. 644s Preparing to unpack .../131-liblammps-dev_20240207+dfsg-3build3_amd64.deb ... 644s Unpacking liblammps-dev (20240207+dfsg-3build3) ... 644s Selecting previously unselected package mpi-default-bin. 644s Preparing to unpack .../132-mpi-default-bin_1.18_amd64.deb ... 644s Unpacking mpi-default-bin (1.18) ... 644s Selecting previously unselected package python3-lammps. 644s Preparing to unpack .../133-python3-lammps_20240207+dfsg-3build3_amd64.deb ... 644s Unpacking python3-lammps (20240207+dfsg-3build3) ... 644s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 644s Setting up libtbbmalloc2:amd64 (2022.0.0-2) ... 644s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 644s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 644s Setting up libwayland-server0:amd64 (1.23.1-3) ... 644s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 644s Setting up libpciaccess0:amd64 (0.17-3build1) ... 644s Setting up libdouble-conversion3:amd64 (3.3.1-1) ... 644s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 644s Setting up libogg0:amd64 (1.3.5-3build1) ... 644s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 644s Setting up proj-data (9.5.1-1) ... 644s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 644s Setting up libxcb-render0:amd64 (1.17.0-2) ... 644s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 644s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 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Setting up libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 644s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 644s Setting up libtsan2:amd64 (15-20250404-0ubuntu1) ... 644s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 644s Setting up libisl23:amd64 (0.27-1) ... 644s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 644s Setting up libcc1-0:amd64 (15-20250404-0ubuntu1) ... 644s Setting up liblsan0:amd64 (15-20250404-0ubuntu1) ... 644s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 644s Setting up libsz2:amd64 (1.1.3-1) ... 644s Setting up libitm1:amd64 (15-20250404-0ubuntu1) ... 644s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 644s Setting up automake (1:1.17-3ubuntu1) ... 644s update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode 644s Setting up libfabric1:amd64 (1.17.0-3.1) ... 644s Setting up mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 644s Setting up liblapack3:amd64 (3.12.1-2) ... 644s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 644s Setting up libgbm1:amd64 (25.0.3-1ubuntu2) ... 644s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 644s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 644s Setting up libkim-api2:amd64 (2.3.0-1ubuntu1) ... 644s Setting up libhwloc-plugins:amd64 (2.12.0-1) ... 644s Setting up libtbbbind-2-5:amd64 (2022.0.0-2) ... 644s Setting up libnl-route-3-dev:amd64 (3.7.0-2) ... 644s Setting up libltdl-dev:amd64 (2.5.4-4) ... 644s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 644s Setting up libevent-dev (2.1.12-stable-10) ... 644s Setting up cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 644s Setting up libpmix2t64:amd64 (5.0.6-5) ... 644s Setting up cpp-14 (14.2.0-19ubuntu2) ... 644s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 644s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 644s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 644s Setting up libhwloc-dev:amd64 (2.12.0-1) ... 644s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 644s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 644s Setting up libpmix-dev:amd64 (5.0.6-5) ... 644s Setting up libgfortran-14-dev:amd64 (14.2.0-19ubuntu2) ... 644s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 644s Setting up libxft2:amd64 (2.3.6-1build1) ... 644s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 644s Setting up libglx0:amd64 (1.7.0-1build1) ... 644s Setting up libproj25:amd64 (9.5.1-1) ... 644s Setting up libtk8.6:amd64 (8.6.16-1) ... 644s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 644s Setting up libtbb12:amd64 (2022.0.0-2) ... 644s Setting up libibverbs-dev:amd64 (56.0-4ubuntu1) ... 644s Setting up libcairo2:amd64 (1.18.4-1) ... 644s Setting up libgl1:amd64 (1.7.0-1build1) ... 644s Setting up libamdhip64-5 (5.7.1-5.1) ... 644s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 644s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 644s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 644s Setting up libucx0:amd64 (1.18.1+ds-2) ... 644s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 644s Setting up gcc-14 (14.2.0-19ubuntu2) ... 644s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 644s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 644s Setting up libopenmpi40:amd64 (5.0.7-1) ... 644s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 644s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 644s Setting up openmpi-bin (5.0.7-1) ... 644s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 644s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 644s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 644s Setting up mpi-default-bin (1.18) ... 644s Setting up liblammps0t64:amd64 (20240207+dfsg-3build3) ... 644s Setting up libopenmpi-dev:amd64 (5.0.7-1) ... 644s update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode 644s Setting up mpi-default-dev (1.18) ... 644s Setting up liblammps-dev (20240207+dfsg-3build3) ... 644s Setting up python3-lammps (20240207+dfsg-3build3) ... 644s Processing triggers for man-db (2.13.0-1) ... 645s Processing triggers for install-info (7.1.1-1) ... 645s Processing triggers for libc-bin (2.41-6ubuntu1) ... 661s autopkgtest [18:56:14]: test command1: cd python/examples; python3 demo.py 661s autopkgtest [18:56:14]: test command1: [----------------------- 662s LAMMPS (7 Feb 2024 - Update 1) 662s 662s Python output: 662s Natoms, mass, x[0][0] coord = 4000 1.0 16.767988851705528 662s Temperature from compute = 0.7571533403732014 662s Energy from equal-style variable = -5.758142569688168 662s Velocity component from atom-style variable = -1.0131655567386921 662s Volume from get_thermo = 4738.213693437576 662s Natoms from get_natoms = 4000 662s Global coords from gather_atoms = 16.767988851705528 16.621004261651628 0.14158807746974947 662s Changed x[0][0] via scatter_atoms = 17.767988851705528 662s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 662s using 1 OpenMP thread(s) per MPI task 662s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 662s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 662s 1 by 1 by 1 MPI processor grid 662s Created 4000 atoms 662s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 662s create_atoms CPU = 0.001 seconds 662s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 662s Neighbor list info ... 662s update: every = 20 steps, delay = 0 steps, check = no 662s max neighbors/atom: 2000, page size: 100000 662s master list distance cutoff = 2.8 662s ghost atom cutoff = 2.8 662s binsize = 1.4, bins = 12 12 12 662s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 662s (1) pair lj/cut, perpetual 662s attributes: half, newton on 662s pair build: half/bin/atomonly/newton 662s stencil: half/bin/3d 662s bin: standard 662s Setting up Verlet run ... 662s Unit style : lj 662s Current step : 0 662s Time step : 0.005 662s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 662s Step Temp E_pair E_mol TotEng Press 662s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 662s 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 662s Loop time of 0.158889 on 1 procs for 100 steps with 4000 atoms 662s 662s Performance: 271887.819 tau/day, 629.370 timesteps/s, 2.517 Matom-step/s 662s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 662s 662s MPI task timing breakdown: 662s Section | min time | avg time | max time |%varavg| %total 662s --------------------------------------------------------------- 662s Pair | 0.13106 | 0.13106 | 0.13106 | 0.0 | 82.48 662s Neigh | 0.022705 | 0.022705 | 0.022705 | 0.0 | 14.29 662s Comm | 0.0026894 | 0.0026894 | 0.0026894 | 0.0 | 1.69 662s Output | 3.2158e-05 | 3.2158e-05 | 3.2158e-05 | 0.0 | 0.02 662s Modify | 0.0020534 | 0.0020534 | 0.0020534 | 0.0 | 1.29 662s Other | | 0.0003527 | | | 0.22 662s 662s Nlocal: 4000 ave 4000 max 4000 min 662s Histogram: 1 0 0 0 0 0 0 0 0 0 662s Nghost: 5754 ave 5754 max 5754 min 662s Histogram: 1 0 0 0 0 0 0 0 0 0 662s Neighs: 150362 ave 150362 max 150362 min 662s Histogram: 1 0 0 0 0 0 0 0 0 0 662s 662s Total # of neighbors = 150362 662s Ave neighs/atom = 37.5905 662s Neighbor list builds = 5 662s Dangerous builds not checked 662s Total wall time: 0:00:00 662s autopkgtest [18:56:15]: test command1: -----------------------] 663s command1 PASS 663s autopkgtest [18:56:16]: test command1: - - - - - - - - - - results - - - - - - - - - - 663s autopkgtest [18:56:16]: @@@@@@@@@@@@@@@@@@@@ summary 663s crack PASS 663s dipole PASS 663s ellipse PASS 663s flow PASS 663s friction PASS 663s hugo PASS 663s command1 PASS 702s nova [W] Skipping flock for amd64 702s Creating nova instance adt-questing-amd64-lammps-20250503-184513-juju-7f2275-prod-proposed-migration-environment-2-b49aec35-cc6f-4e09-b903-2c55de29dc85 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID adbe8b9e-12c7-44a2-a05e-3372f89ed694)... 702s nova [W] Skipping flock for amd64 702s Creating nova instance adt-questing-amd64-lammps-20250503-184513-juju-7f2275-prod-proposed-migration-environment-2-b49aec35-cc6f-4e09-b903-2c55de29dc85 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID adbe8b9e-12c7-44a2-a05e-3372f89ed694)... 702s nova [W] Timed out waiting for 76d58eab-8a84-4787-8396-80058e30b1c4 to get deleted.