0s autopkgtest [17:32:51]: starting date and time: 2025-05-03 17:32:51+0000 0s autopkgtest [17:32:51]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [17:32:51]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.aa2kwztz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python3.13 --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python3.13/3.13.3-2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-cpu2-ram4-disk20-amd64 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@sto01-5.secgroup --name adt-questing-amd64-lammps-20250503-173251-juju-7f2275-prod-proposed-migration-environment-15-f01044d6-c436-4f89-9e63-dfd7d0075910 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-autopkgtest-workers-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 52s autopkgtest [17:33:43]: testbed dpkg architecture: amd64 52s autopkgtest [17:33:43]: testbed apt version: 3.0.0 52s autopkgtest [17:33:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 52s autopkgtest [17:33:43]: testbed release detected to be: None 53s autopkgtest [17:33:44]: updating testbed package index (apt update) 53s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 53s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 53s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 53s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 53s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 53s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 53s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1457 kB] 54s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [141 kB] 54s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [197 kB] 54s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1416 kB] 54s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [570 kB] 54s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 54s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.3 kB] 54s Fetched 4144 kB in 1s (3775 kB/s) 55s Reading package lists... 55s autopkgtest [17:33:46]: upgrading testbed (apt dist-upgrade and autopurge) 55s Reading package lists... 55s Building dependency tree... 55s Reading state information... 56s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 56s Starting 2 pkgProblemResolver with broken count: 0 56s Done 56s Entering ResolveByKeep 56s 56s Calculating upgrade... 56s The following packages will be upgraded: 56s libperl5.40 libpython3.13 libpython3.13-minimal libpython3.13-stdlib perl 56s perl-base perl-modules-5.40 python3.13 python3.13-gdbm python3.13-minimal 56s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 56s Need to get 18.6 MB of archives. 56s After this operation, 8192 B of additional disk space will be used. 56s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 57s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl amd64 5.40.1-3 [262 kB] 57s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 57s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 57s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3.13 amd64 3.13.3-2 [739 kB] 57s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libpython3.13 amd64 3.13.3-2 [2342 kB] 57s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [2071 kB] 57s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3.13-minimal amd64 3.13.3-2 [2372 kB] 57s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libpython3.13-minimal amd64 3.13.3-2 [884 kB] 57s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3.13-gdbm amd64 3.13.3-2 [32.1 kB] 57s Fetched 18.6 MB in 1s (21.1 MB/s) 57s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 57s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 57s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 58s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 58s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 58s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 58s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 58s Setting up perl-base (5.40.1-3) ... 58s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 58s Preparing to unpack .../0-perl-modules-5.40_5.40.1-3_all.deb ... 58s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 58s Preparing to unpack .../1-python3.13_3.13.3-2_amd64.deb ... 58s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 58s Preparing to unpack .../2-libpython3.13_3.13.3-2_amd64.deb ... 58s Unpacking libpython3.13:amd64 (3.13.3-2) over (3.13.3-1) ... 58s Preparing to unpack .../3-libpython3.13-stdlib_3.13.3-2_amd64.deb ... 58s Unpacking libpython3.13-stdlib:amd64 (3.13.3-2) over (3.13.3-1) ... 58s Preparing to unpack .../4-python3.13-minimal_3.13.3-2_amd64.deb ... 58s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 58s Preparing to unpack .../5-libpython3.13-minimal_3.13.3-2_amd64.deb ... 58s Unpacking libpython3.13-minimal:amd64 (3.13.3-2) over (3.13.3-1) ... 58s Preparing to unpack .../6-python3.13-gdbm_3.13.3-2_amd64.deb ... 58s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 58s Setting up libpython3.13-minimal:amd64 (3.13.3-2) ... 58s Setting up perl-modules-5.40 (5.40.1-3) ... 58s Setting up python3.13-minimal (3.13.3-2) ... 59s Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ... 59s Setting up python3.13-gdbm (3.13.3-2) ... 59s Setting up libpython3.13:amd64 (3.13.3-2) ... 59s Setting up python3.13 (3.13.3-2) ... 60s Setting up libperl5.40:amd64 (5.40.1-3) ... 60s Setting up perl (5.40.1-3) ... 60s Processing triggers for systemd (257.4-1ubuntu3) ... 60s Processing triggers for man-db (2.13.0-1) ... 60s Processing triggers for libc-bin (2.41-6ubuntu1) ... 60s Reading package lists... 60s Building dependency tree... 60s Reading state information... 61s Starting pkgProblemResolver with broken count: 0 61s Starting 2 pkgProblemResolver with broken count: 0 61s Done 61s Solving dependencies... 61s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 63s autopkgtest [17:33:54]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 63s autopkgtest [17:33:54]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 69s Get:1 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (dsc) [3182 B] 69s Get:2 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (tar) [153 MB] 69s Get:3 http://ftpmaster.internal/ubuntu questing/universe lammps 20240207+dfsg-3build3 (diff) [17.4 kB] 69s gpgv: Signature made Tue Feb 25 20:55:58 2025 UTC 69s gpgv: using RSA key B8340990283D8D9BC1949AC74799A35146D12B35 69s gpgv: Can't check signature: No public key 69s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-3build3.dsc: no acceptable signature found 73s autopkgtest [17:34:04]: testing package lammps version 20240207+dfsg-3build3 74s autopkgtest [17:34:05]: build not needed 94s autopkgtest [17:34:25]: test crack: preparing testbed 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Starting pkgProblemResolver with broken count: 0 94s Starting 2 pkgProblemResolver with broken count: 0 94s Done 94s The following NEW packages will be installed: 94s fontconfig-config fonts-dejavu-core fonts-dejavu-mono lammps lammps-data 94s libaec0 libamd-comgr2 libamdhip64-5 libblas3 libcairo2 libdeflate0 94s libdouble-conversion3 libdrm-intel1 libevent-pthreads-2.1-7t64 libfabric1 94s libfftw3-double3 libfontconfig1 libgbm1 libgfortran5 libgl1 libgl1-mesa-dri 94s libgl2ps1.4 libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 94s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins libhwloc15 94s libibmad5 libibumad3 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp26 94s libkim-api2 liblammps0t64 liblapack3 liblerc4 libllvm17t64 libmunge2 94s libnetcdf22 libogg0 libopengl0 libopenmpi40 libpciaccess0 libpixman-1-0 94s libpmix2t64 libpnetcdf6 libproj25 libpsm-infinipath1 libpsm2-2 librdmacm1t64 94s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 94s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libucx0 libvoro++1 libvtk9.3 94s libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 libxcb-dri3-0 libxcb-glx0 94s libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 libxcb-sync1 94s libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 libxshmfence1 libxss1 94s libxxf86vm1 mesa-libgallium mpi-default-bin ocl-icd-libopencl1 openmpi-bin 94s openmpi-common proj-data x11-common 94s 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 139 MB of archives. 94s After this operation, 607 MB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 94s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 94s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 94s Get:4 http://ftpmaster.internal/ubuntu questing/universe amd64 lammps-data all 20240207+dfsg-3build3 [9732 kB] 95s Get:5 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 95s Get:6 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 95s Get:7 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 95s Get:8 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 95s Get:9 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 95s Get:10 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 95s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 95s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 95s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 95s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 95s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 95s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 95s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 95s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 95s Get:19 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 95s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 95s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 95s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 95s Get:23 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 95s Get:24 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 95s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 95s Get:26 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 95s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 95s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 95s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 95s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 95s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 95s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 95s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 95s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 95s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 95s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 95s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 96s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 96s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 96s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 96s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 96s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 96s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 96s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 96s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 96s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 96s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 96s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 96s Get:49 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 96s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 96s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 96s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 96s Get:53 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 96s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 96s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 96s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 96s Get:57 http://ftpmaster.internal/ubuntu questing/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 96s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 96s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 96s Get:60 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 96s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 96s Get:62 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 96s Get:63 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 96s Get:64 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB] 96s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 96s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 96s Get:67 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 96s Get:68 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 96s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 96s Get:70 http://ftpmaster.internal/ubuntu questing/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 96s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 96s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 96s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB] 96s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 96s Get:75 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 96s Get:76 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 96s Get:77 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 96s Get:78 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 96s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 96s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 96s Get:81 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 96s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 96s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 96s Get:84 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 96s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 96s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 96s Get:87 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 96s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 96s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 96s Get:90 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB] 97s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 liblammps0t64 amd64 20240207+dfsg-3build3 [8393 kB] 97s Get:92 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 97s Get:93 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 97s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 97s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 lammps amd64 20240207+dfsg-3build3 [15.4 kB] 97s Fetched 139 MB in 3s (53.9 MB/s) 97s Selecting previously unselected package fonts-dejavu-mono. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 97s Preparing to unpack .../00-fonts-dejavu-mono_2.37-8_all.deb ... 97s Unpacking fonts-dejavu-mono (2.37-8) ... 97s Selecting previously unselected package fonts-dejavu-core. 97s Preparing to unpack .../01-fonts-dejavu-core_2.37-8_all.deb ... 97s Unpacking fonts-dejavu-core (2.37-8) ... 97s Selecting previously unselected package fontconfig-config. 97s Preparing to unpack .../02-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 97s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 97s Selecting previously unselected package lammps-data. 97s Preparing to unpack .../03-lammps-data_20240207+dfsg-3build3_all.deb ... 97s Unpacking lammps-data (20240207+dfsg-3build3) ... 98s Selecting previously unselected package libaec0:amd64. 98s Preparing to unpack .../04-libaec0_1.1.3-1_amd64.deb ... 98s Unpacking libaec0:amd64 (1.1.3-1) ... 98s Selecting previously unselected package libllvm17t64:amd64. 98s Preparing to unpack .../05-libllvm17t64_1%3a17.0.6-21_amd64.deb ... 98s Unpacking libllvm17t64:amd64 (1:17.0.6-21) ... 98s Selecting previously unselected package libamd-comgr2:amd64. 98s Preparing to unpack .../06-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 98s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 98s Selecting previously unselected package libhsakmt1:amd64. 98s Preparing to unpack .../07-libhsakmt1_5.7.0-1build1_amd64.deb ... 98s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 98s Selecting previously unselected package libhsa-runtime64-1. 98s Preparing to unpack .../08-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 98s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 98s Selecting previously unselected package libamdhip64-5. 98s Preparing to unpack .../09-libamdhip64-5_5.7.1-5.1_amd64.deb ... 98s Unpacking libamdhip64-5 (5.7.1-5.1) ... 98s Selecting previously unselected package libblas3:amd64. 98s Preparing to unpack .../10-libblas3_3.12.1-2_amd64.deb ... 98s Unpacking libblas3:amd64 (3.12.1-2) ... 98s Selecting previously unselected package libfontconfig1:amd64. 98s Preparing to unpack .../11-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 98s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 99s Selecting previously unselected package libpixman-1-0:amd64. 99s Preparing to unpack .../12-libpixman-1-0_0.44.0-3_amd64.deb ... 99s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 99s Selecting previously unselected package libxcb-render0:amd64. 99s Preparing to unpack .../13-libxcb-render0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxcb-shm0:amd64. 99s Preparing to unpack .../14-libxcb-shm0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxrender1:amd64. 99s Preparing to unpack .../15-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 99s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 99s Selecting previously unselected package libcairo2:amd64. 99s Preparing to unpack .../16-libcairo2_1.18.4-1_amd64.deb ... 99s Unpacking libcairo2:amd64 (1.18.4-1) ... 99s Selecting previously unselected package libdeflate0:amd64. 99s Preparing to unpack .../17-libdeflate0_1.23-2_amd64.deb ... 99s Unpacking libdeflate0:amd64 (1.23-2) ... 99s Selecting previously unselected package libdouble-conversion3:amd64. 99s Preparing to unpack .../18-libdouble-conversion3_3.3.1-1_amd64.deb ... 99s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ... 99s Selecting previously unselected package libpciaccess0:amd64. 99s Preparing to unpack .../19-libpciaccess0_0.17-3build1_amd64.deb ... 99s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 99s Selecting previously unselected package libdrm-intel1:amd64. 99s Preparing to unpack .../20-libdrm-intel1_2.4.124-2_amd64.deb ... 99s Unpacking libdrm-intel1:amd64 (2.4.124-2) ... 99s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 99s Preparing to unpack .../21-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 99s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 99s Selecting previously unselected package libpsm-infinipath1. 99s Preparing to unpack .../22-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ... 99s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 99s Selecting previously unselected package libpsm2-2. 99s Preparing to unpack .../23-libpsm2-2_11.2.185-2.1_amd64.deb ... 99s Unpacking libpsm2-2 (11.2.185-2.1) ... 99s Selecting previously unselected package librdmacm1t64:amd64. 99s Preparing to unpack .../24-librdmacm1t64_56.0-4ubuntu1_amd64.deb ... 99s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ... 99s Selecting previously unselected package libfabric1:amd64. 99s Preparing to unpack .../25-libfabric1_1.17.0-3.1_amd64.deb ... 99s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 99s Selecting previously unselected package libgomp1:amd64. 99s Preparing to unpack .../26-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 99s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 99s Selecting previously unselected package libfftw3-double3:amd64. 99s Preparing to unpack .../27-libfftw3-double3_3.3.10-2fakesync1build1_amd64.deb ... 99s Unpacking libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 99s Selecting previously unselected package libwayland-server0:amd64. 99s Preparing to unpack .../28-libwayland-server0_1.23.1-3_amd64.deb ... 99s Unpacking libwayland-server0:amd64 (1.23.1-3) ... 99s Selecting previously unselected package libx11-xcb1:amd64. 99s Preparing to unpack .../29-libx11-xcb1_2%3a1.8.10-2_amd64.deb ... 99s Unpacking libx11-xcb1:amd64 (2:1.8.10-2) ... 99s Selecting previously unselected package libxcb-dri3-0:amd64. 99s Preparing to unpack .../30-libxcb-dri3-0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxcb-present0:amd64. 99s Preparing to unpack .../31-libxcb-present0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxcb-randr0:amd64. 99s Preparing to unpack .../32-libxcb-randr0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxcb-sync1:amd64. 99s Preparing to unpack .../33-libxcb-sync1_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxcb-xfixes0:amd64. 99s Preparing to unpack .../34-libxcb-xfixes0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxshmfence1:amd64. 99s Preparing to unpack .../35-libxshmfence1_1.3.3-1_amd64.deb ... 99s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 99s Selecting previously unselected package mesa-libgallium:amd64. 99s Preparing to unpack .../36-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ... 99s Unpacking mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 99s Selecting previously unselected package libgbm1:amd64. 99s Preparing to unpack .../37-libgbm1_25.0.3-1ubuntu2_amd64.deb ... 99s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ... 99s Selecting previously unselected package libgfortran5:amd64. 99s Preparing to unpack .../38-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 99s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 99s Selecting previously unselected package libvulkan1:amd64. 99s Preparing to unpack .../39-libvulkan1_1.4.304.0-1_amd64.deb ... 99s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 99s Selecting previously unselected package libgl1-mesa-dri:amd64. 99s Preparing to unpack .../40-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ... 99s Unpacking libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 99s Selecting previously unselected package libglvnd0:amd64. 99s Preparing to unpack .../41-libglvnd0_1.7.0-1build1_amd64.deb ... 99s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 99s Selecting previously unselected package libxcb-glx0:amd64. 99s Preparing to unpack .../42-libxcb-glx0_1.17.0-2_amd64.deb ... 99s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 99s Selecting previously unselected package libxxf86vm1:amd64. 99s Preparing to unpack .../43-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 99s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 99s Selecting previously unselected package libglx-mesa0:amd64. 99s Preparing to unpack .../44-libglx-mesa0_25.0.3-1ubuntu2_amd64.deb ... 99s Unpacking libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 99s Selecting previously unselected package libglx0:amd64. 99s Preparing to unpack .../45-libglx0_1.7.0-1build1_amd64.deb ... 99s Unpacking libglx0:amd64 (1.7.0-1build1) ... 99s Selecting previously unselected package libgl1:amd64. 99s Preparing to unpack .../46-libgl1_1.7.0-1build1_amd64.deb ... 99s Unpacking libgl1:amd64 (1.7.0-1build1) ... 99s Selecting previously unselected package libgl2ps1.4. 99s Preparing to unpack .../47-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 99s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 99s Selecting previously unselected package libglew2.2:amd64. 99s Preparing to unpack .../48-libglew2.2_2.2.0-4build1_amd64.deb ... 99s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 99s Selecting previously unselected package libsz2:amd64. 99s Preparing to unpack .../49-libsz2_1.1.3-1_amd64.deb ... 99s Unpacking libsz2:amd64 (1.1.3-1) ... 99s Selecting previously unselected package libhdf5-310:amd64. 99s Preparing to unpack .../50-libhdf5-310_1.14.5+repack-3_amd64.deb ... 99s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 99s Selecting previously unselected package libhdf5-hl-310:amd64. 99s Preparing to unpack .../51-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 99s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 99s Selecting previously unselected package libhwloc15:amd64. 99s Preparing to unpack .../52-libhwloc15_2.12.0-1_amd64.deb ... 99s Unpacking libhwloc15:amd64 (2.12.0-1) ... 99s Selecting previously unselected package libjpeg-turbo8:amd64. 99s Preparing to unpack .../53-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 99s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 99s Selecting previously unselected package libjpeg8:amd64. 100s Preparing to unpack .../54-libjpeg8_8c-2ubuntu11_amd64.deb ... 100s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 100s Selecting previously unselected package libjsoncpp26:amd64. 100s Preparing to unpack .../55-libjsoncpp26_1.9.6-3_amd64.deb ... 100s Unpacking libjsoncpp26:amd64 (1.9.6-3) ... 100s Selecting previously unselected package libkim-api2:amd64. 100s Preparing to unpack .../56-libkim-api2_2.3.0-1ubuntu1_amd64.deb ... 100s Unpacking libkim-api2:amd64 (2.3.0-1ubuntu1) ... 100s Selecting previously unselected package liblapack3:amd64. 100s Preparing to unpack .../57-liblapack3_3.12.1-2_amd64.deb ... 100s Unpacking liblapack3:amd64 (3.12.1-2) ... 100s Selecting previously unselected package libnetcdf22:amd64. 100s Preparing to unpack .../58-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 100s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 100s Selecting previously unselected package libmunge2:amd64. 100s Preparing to unpack .../59-libmunge2_0.5.16-1_amd64.deb ... 100s Unpacking libmunge2:amd64 (0.5.16-1) ... 100s Selecting previously unselected package libxnvctrl0:amd64. 100s Preparing to unpack .../60-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 100s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 100s Selecting previously unselected package ocl-icd-libopencl1:amd64. 100s Preparing to unpack .../61-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 100s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 100s Selecting previously unselected package libhwloc-plugins:amd64. 100s Preparing to unpack .../62-libhwloc-plugins_2.12.0-1_amd64.deb ... 100s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ... 100s Selecting previously unselected package libpmix2t64:amd64. 100s Preparing to unpack .../63-libpmix2t64_5.0.6-5_amd64.deb ... 100s Unpacking libpmix2t64:amd64 (5.0.6-5) ... 100s Selecting previously unselected package libibumad3:amd64. 100s Preparing to unpack .../64-libibumad3_56.0-4ubuntu1_amd64.deb ... 100s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ... 100s Selecting previously unselected package libibmad5:amd64. 100s Preparing to unpack .../65-libibmad5_56.0-4ubuntu1_amd64.deb ... 100s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ... 100s Selecting previously unselected package libucx0:amd64. 100s Preparing to unpack .../66-libucx0_1.18.1+ds-2_amd64.deb ... 100s Unpacking libucx0:amd64 (1.18.1+ds-2) ... 100s Selecting previously unselected package libopenmpi40:amd64. 100s Preparing to unpack .../67-libopenmpi40_5.0.7-1_amd64.deb ... 100s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 100s Selecting previously unselected package libpnetcdf6:amd64. 100s Preparing to unpack .../68-libpnetcdf6_1.14.0-2_amd64.deb ... 100s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 100s Selecting previously unselected package libvoro++1. 100s Preparing to unpack .../69-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 100s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 100s Selecting previously unselected package libogg0:amd64. 100s Preparing to unpack .../70-libogg0_1.3.5-3build1_amd64.deb ... 100s Unpacking libogg0:amd64 (1.3.5-3build1) ... 100s Selecting previously unselected package libopengl0:amd64. 100s Preparing to unpack .../71-libopengl0_1.7.0-1build1_amd64.deb ... 100s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 100s Selecting previously unselected package proj-data. 100s Preparing to unpack .../72-proj-data_9.5.1-1_all.deb ... 100s Unpacking proj-data (9.5.1-1) ... 100s Selecting previously unselected package libjbig0:amd64. 100s Preparing to unpack .../73-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 100s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 100s Selecting previously unselected package liblerc4:amd64. 100s Preparing to unpack .../74-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 100s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 100s Selecting previously unselected package libsharpyuv0:amd64. 100s Preparing to unpack .../75-libsharpyuv0_1.5.0-0.1_amd64.deb ... 100s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 100s Selecting previously unselected package libwebp7:amd64. 100s Preparing to unpack .../76-libwebp7_1.5.0-0.1_amd64.deb ... 100s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 100s Selecting previously unselected package libtiff6:amd64. 100s Preparing to unpack .../77-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 100s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 100s Selecting previously unselected package libproj25:amd64. 100s Preparing to unpack .../78-libproj25_9.5.1-1_amd64.deb ... 100s Unpacking libproj25:amd64 (9.5.1-1) ... 100s Selecting previously unselected package libtbbbind-2-5:amd64. 100s Preparing to unpack .../79-libtbbbind-2-5_2022.0.0-2_amd64.deb ... 100s Unpacking libtbbbind-2-5:amd64 (2022.0.0-2) ... 100s Selecting previously unselected package libtbbmalloc2:amd64. 100s Preparing to unpack .../80-libtbbmalloc2_2022.0.0-2_amd64.deb ... 100s Unpacking libtbbmalloc2:amd64 (2022.0.0-2) ... 100s Selecting previously unselected package libtbb12:amd64. 100s Preparing to unpack .../81-libtbb12_2022.0.0-2_amd64.deb ... 100s Unpacking libtbb12:amd64 (2022.0.0-2) ... 100s Selecting previously unselected package libtcl8.6:amd64. 100s Preparing to unpack .../82-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 100s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 100s Selecting previously unselected package libtheoradec1:amd64. 100s Preparing to unpack .../83-libtheoradec1_1.2.0~alpha1+dfsg-6_amd64.deb ... 100s Unpacking libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 100s Selecting previously unselected package libtheoraenc1:amd64. 100s Preparing to unpack .../84-libtheoraenc1_1.2.0~alpha1+dfsg-6_amd64.deb ... 100s Unpacking libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 100s Selecting previously unselected package libxft2:amd64. 100s Preparing to unpack .../85-libxft2_2.3.6-1build1_amd64.deb ... 100s Unpacking libxft2:amd64 (2.3.6-1build1) ... 100s Selecting previously unselected package x11-common. 100s Preparing to unpack .../86-x11-common_1%3a7.7+23ubuntu4_all.deb ... 100s Unpacking x11-common (1:7.7+23ubuntu4) ... 100s Selecting previously unselected package libxss1:amd64. 100s Preparing to unpack .../87-libxss1_1%3a1.2.3-1build3_amd64.deb ... 100s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 100s Selecting previously unselected package libtk8.6:amd64. 100s Preparing to unpack .../88-libtk8.6_8.6.16-1_amd64.deb ... 100s Unpacking libtk8.6:amd64 (8.6.16-1) ... 100s Selecting previously unselected package libvtk9.3:amd64. 100s Preparing to unpack .../89-libvtk9.3_9.3.0+dfsg1-4ubuntu1_amd64.deb ... 100s Unpacking libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 101s Selecting previously unselected package liblammps0t64:amd64. 101s Preparing to unpack .../90-liblammps0t64_20240207+dfsg-3build3_amd64.deb ... 101s Unpacking liblammps0t64:amd64 (20240207+dfsg-3build3) ... 101s Selecting previously unselected package openmpi-common. 101s Preparing to unpack .../91-openmpi-common_5.0.7-1_all.deb ... 101s Unpacking openmpi-common (5.0.7-1) ... 101s Selecting previously unselected package openmpi-bin. 101s Preparing to unpack .../92-openmpi-bin_5.0.7-1_amd64.deb ... 101s Unpacking openmpi-bin (5.0.7-1) ... 101s Selecting previously unselected package mpi-default-bin. 101s Preparing to unpack .../93-mpi-default-bin_1.18_amd64.deb ... 101s Unpacking mpi-default-bin (1.18) ... 101s Selecting previously unselected package lammps. 101s Preparing to unpack .../94-lammps_20240207+dfsg-3build3_amd64.deb ... 101s Unpacking lammps (20240207+dfsg-3build3) ... 101s Setting up libxcb-dri3-0:amd64 (1.17.0-2) ... 101s Setting up libtbbmalloc2:amd64 (2022.0.0-2) ... 101s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 101s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 101s Setting up libwayland-server0:amd64 (1.23.1-3) ... 101s Setting up libx11-xcb1:amd64 (2:1.8.10-2) ... 101s Setting up libpciaccess0:amd64 (0.17-3build1) ... 101s Setting up libdouble-conversion3:amd64 (3.3.1-1) ... 101s Setting up libxcb-xfixes0:amd64 (1.17.0-2) ... 101s Setting up libogg0:amd64 (1.3.5-3build1) ... 101s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 101s Setting up proj-data (9.5.1-1) ... 101s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 101s Setting up lammps-data (20240207+dfsg-3build3) ... 101s Setting up libxcb-render0:amd64 (1.17.0-2) ... 101s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 101s Setting up libglvnd0:amd64 (1.7.0-1build1) ... 101s Setting up libxcb-glx0:amd64 (1.17.0-2) ... 101s Setting up libdrm-intel1:amd64 (2.4.124-2) ... 101s Setting up x11-common (1:7.7+23ubuntu4) ... 101s Setting up libibumad3:amd64 (56.0-4ubuntu1) ... 101s Setting up libdeflate0:amd64 (1.23-2) ... 101s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 101s Setting up libibmad5:amd64 (56.0-4ubuntu1) ... 101s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 101s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 101s Setting up libaec0:amd64 (1.1.3-1) ... 101s Setting up libopengl0:amd64 (1.7.0-1build1) ... 101s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 101s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 101s Setting up libxcb-present0:amd64 (1.17.0-2) ... 101s Setting up libtheoraenc1:amd64 (1.2.0~alpha1+dfsg-6) ... 101s Setting up libblas3:amd64 (3.12.1-2) ... 101s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 101s Setting up libmunge2:amd64 (0.5.16-1) ... 101s Setting up libllvm17t64:amd64 (1:17.0.6-21) ... 101s Setting up libxcb-sync1:amd64 (1.17.0-2) ... 101s Setting up libjsoncpp26:amd64 (1.9.6-3) ... 101s Setting up fonts-dejavu-mono (2.37-8) ... 101s Setting up libhwloc15:amd64 (2.12.0-1) ... 101s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 101s Setting up fonts-dejavu-core (2.37-8) ... 101s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 101s Setting up libfftw3-double3:amd64 (3.3.10-2fakesync1build1) ... 101s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 101s Setting up libvulkan1:amd64 (1.4.304.0-1) ... 101s Setting up libwebp7:amd64 (1.5.0-0.1) ... 101s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 101s Setting up libxshmfence1:amd64 (1.3.3-1) ... 101s Setting up libxcb-randr0:amd64 (1.17.0-2) ... 101s Setting up libpsm2-2 (11.2.185-2.1) ... 101s Setting up openmpi-common (5.0.7-1) ... 101s Setting up librdmacm1t64:amd64 (56.0-4ubuntu1) ... 101s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 101s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 101s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 101s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 101s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 101s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 101s Setting up libsz2:amd64 (1.1.3-1) ... 101s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 101s Setting up libfabric1:amd64 (1.17.0-3.1) ... 101s Setting up mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 101s Setting up liblapack3:amd64 (3.12.1-2) ... 101s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 101s Setting up libgbm1:amd64 (25.0.3-1ubuntu2) ... 101s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 102s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 102s Setting up libkim-api2:amd64 (2.3.0-1ubuntu1) ... 102s Setting up libhwloc-plugins:amd64 (2.12.0-1) ... 102s Setting up libtbbbind-2-5:amd64 (2022.0.0-2) ... 102s Setting up libpmix2t64:amd64 (5.0.6-5) ... 102s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 102s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 102s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 102s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 102s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 102s Setting up libxft2:amd64 (2.3.6-1build1) ... 102s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 102s Setting up libglx0:amd64 (1.7.0-1build1) ... 102s Setting up libproj25:amd64 (9.5.1-1) ... 102s Setting up libtk8.6:amd64 (8.6.16-1) ... 102s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 102s Setting up libtbb12:amd64 (2022.0.0-2) ... 102s Setting up libcairo2:amd64 (1.18.4-1) ... 102s Setting up libgl1:amd64 (1.7.0-1build1) ... 102s Setting up libamdhip64-5 (5.7.1-5.1) ... 102s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 102s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 102s Setting up libucx0:amd64 (1.18.1+ds-2) ... 102s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 102s Setting up libopenmpi40:amd64 (5.0.7-1) ... 102s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 102s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 102s Setting up openmpi-bin (5.0.7-1) ... 102s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 102s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 102s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 102s Setting up mpi-default-bin (1.18) ... 102s Setting up liblammps0t64:amd64 (20240207+dfsg-3build3) ... 102s Setting up lammps (20240207+dfsg-3build3) ... 102s Processing triggers for man-db (2.13.0-1) ... 102s Processing triggers for libc-bin (2.41-6ubuntu1) ... 103s autopkgtest [17:34:34]: test crack: [----------------------- 103s LAMMPS (7 Feb 2024 - Update 1) 103s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 103s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 103s using 1 OpenMP thread(s) per MPI task 103s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 103s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 103s 2 by 1 by 1 MPI processor grid 103s Created 8141 atoms 103s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 103s create_atoms CPU = 0.001 seconds 103s 302 atoms in group lower 103s 302 atoms in group upper 103s 604 atoms in group boundary 103s 7537 atoms in group mobile 103s 841 atoms in group leftupper 103s 841 atoms in group leftlower 103s Setting atom values ... 103s 841 settings made for type 103s Setting atom values ... 103s 841 settings made for type 103s Setting atom values ... 103s 302 settings made for type 103s Setting atom values ... 103s 302 settings made for type 103s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 103s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 103s Neighbor list info ... 103s update: every = 1 steps, delay = 5 steps, check = yes 103s max neighbors/atom: 2000, page size: 100000 103s master list distance cutoff = 2.8 103s ghost atom cutoff = 2.8 103s binsize = 1.4, bins = 80 56 1 103s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 103s (1) pair lj/cut, perpetual 103s attributes: half, newton on 103s pair build: half/bin/atomonly/newton 103s stencil: half/bin/2d 103s bin: standard 103s Setting up Verlet run ... 103s Unit style : lj 103s Current step : 0 103s Time step : 0.003 103s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 103s Step Temp E_pair E_mol TotEng Press Volume 103s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 103s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 103s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 103s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 104s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 104s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 104s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 104s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 104s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 104s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 104s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 104s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 104s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 104s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 104s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 104s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 104s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 104s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 104s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 104s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 104s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 104s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 104s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 104s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 105s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 105s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 105s Loop time of 1.25409 on 2 procs for 5000 steps with 8141 atoms 105s 105s Performance: 1033417.648 tau/day, 3986.951 timesteps/s, 32.458 Matom-step/s 105s 97.7% CPU use with 2 MPI tasks x 1 OpenMP threads 105s 105s MPI task timing breakdown: 105s Section | min time | avg time | max time |%varavg| %total 105s --------------------------------------------------------------- 105s Pair | 0.91897 | 0.92078 | 0.92258 | 0.2 | 73.42 105s Neigh | 0.065241 | 0.069878 | 0.074515 | 1.8 | 5.57 105s Comm | 0.10105 | 0.10361 | 0.10617 | 0.8 | 8.26 105s Output | 0.00070435 | 0.001438 | 0.0021716 | 1.9 | 0.11 105s Modify | 0.11774 | 0.11844 | 0.11914 | 0.2 | 9.44 105s Other | | 0.03995 | | | 3.19 105s 105s Nlocal: 4070.5 ave 4085 max 4056 min 105s Histogram: 1 0 0 0 0 0 0 0 0 1 105s Nghost: 207 ave 208 max 206 min 105s Histogram: 1 0 0 0 0 0 0 0 0 1 105s Neighs: 35700 ave 35927 max 35473 min 105s Histogram: 1 0 0 0 0 0 0 0 0 1 105s 105s Total # of neighbors = 71400 105s Ave neighs/atom = 8.7704213 105s Neighbor list builds = 106 105s Dangerous builds = 0 105s Total wall time: 0:00:01 105s LAMMPS (7 Feb 2024 - Update 1) 107s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 107s using 1 OpenMP thread(s) per MPI task 107s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 107s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 107s 1 by 1 by 1 MPI processor grid 107s Created 8141 atoms 107s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 107s create_atoms CPU = 0.001 seconds 107s 302 atoms in group lower 107s 302 atoms in group upper 107s 604 atoms in group boundary 107s 7537 atoms in group mobile 107s 841 atoms in group leftupper 107s 841 atoms in group leftlower 107s Setting atom values ... 107s 841 settings made for type 107s Setting atom values ... 107s 841 settings made for type 107s Setting atom values ... 107s 302 settings made for type 107s Setting atom values ... 107s 302 settings made for type 107s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 107s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 107s Neighbor list info ... 107s update: every = 1 steps, delay = 5 steps, check = yes 107s max neighbors/atom: 2000, page size: 100000 107s master list distance cutoff = 2.8 107s ghost atom cutoff = 2.8 107s binsize = 1.4, bins = 80 56 1 107s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 107s (1) pair lj/cut, perpetual 107s attributes: half, newton on 107s pair build: half/bin/atomonly/newton 107s stencil: half/bin/2d 107s bin: standard 107s Setting up Verlet run ... 107s Unit style : lj 107s Current step : 0 107s Time step : 0.003 107s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 107s Step Temp E_pair E_mol TotEng Press Volume 107s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 107s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 107s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 107s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 107s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 107s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 107s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 107s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 107s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 107s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 107s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 107s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 107s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 107s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 107s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 107s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 107s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 107s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 107s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 107s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 107s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 107s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 107s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 107s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 107s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 107s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 107s Loop time of 2.29066 on 1 procs for 5000 steps with 8141 atoms 107s 107s Performance: 565774.942 tau/day, 2182.774 timesteps/s, 17.770 Matom-step/s 107s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 107s 107s MPI task timing breakdown: 107s Section | min time | avg time | max time |%varavg| %total 107s --------------------------------------------------------------- 107s Pair | 1.8601 | 1.8601 | 1.8601 | 0.0 | 81.20 107s Neigh | 0.1298 | 0.1298 | 0.1298 | 0.0 | 5.67 107s Comm | 0.0022179 | 0.0022179 | 0.0022179 | 0.0 | 0.10 107s Output | 0.0011385 | 0.0011385 | 0.0011385 | 0.0 | 0.05 107s Modify | 0.23886 | 0.23886 | 0.23886 | 0.0 | 10.43 107s Other | | 0.05853 | | | 2.55 107s 107s Nlocal: 8141 ave 8141 max 8141 min 107s Histogram: 1 0 0 0 0 0 0 0 0 0 107s Nghost: 0 ave 0 max 0 min 107s Histogram: 1 0 0 0 0 0 0 0 0 0 107s Neighs: 71389 ave 71389 max 71389 min 107s Histogram: 1 0 0 0 0 0 0 0 0 0 107s 107s Total # of neighbors = 71389 107s Ave neighs/atom = 8.7690701 107s Neighbor list builds = 100 107s Dangerous builds = 0 107s Total wall time: 0:00:02 107s run: OK 108s autopkgtest [17:34:39]: test crack: -----------------------] 108s autopkgtest [17:34:39]: test crack: - - - - - - - - - - results - - - - - - - - - - 108s crack PASS 108s autopkgtest [17:34:39]: test dipole: preparing testbed 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s autopkgtest [17:34:40]: test dipole: [----------------------- 110s LAMMPS (7 Feb 2024 - Update 1) 110s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 110s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 110s using 1 OpenMP thread(s) per MPI task 110s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 110s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 110s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 110s 2 by 1 by 1 MPI processor grid 110s Created 200 atoms 110s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 110s create_atoms CPU = 0.000 seconds 110s Setting atom values ... 110s 200 settings made for mass 110s Setting atom values ... 110s 200 settings made for dipole/random 110s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 110s Neighbor list info ... 110s update: every = 1 steps, delay = 0 steps, check = yes 110s max neighbors/atom: 2000, page size: 100000 110s master list distance cutoff = 2.8 110s ghost atom cutoff = 2.8 110s binsize = 1.4, bins = 13 13 2 110s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 110s (1) pair lj/cut/dipole/cut, perpetual 110s attributes: half, newton on 110s pair build: half/bin/atomonly/newton 110s stencil: half/bin/2d 110s bin: standard 110s Setting up Verlet run ... 110s Unit style : lj 110s Current step : 0 110s Time step : 0.005 110s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 110s Step Temp E_pair c_erot TotEng Press 110s 0 0 -2.1909822 0 -2.1909822 -2.5750971 110s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 110s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 110s 1500 0.4211022 -2.8019061 0.19532181 -2.3829095 0.18067145 110s 2000 0.39019874 -2.7914862 0.22407011 -2.4032384 -0.40912648 110s 2500 0.40189542 -2.8134715 0.24278607 -2.4135855 -0.33547386 110s 3000 0.45253597 -2.8432831 0.22668907 -2.3930098 0.031945804 110s 3500 0.45543566 -2.80999 0.19086399 -2.3568315 0.029485295 110s 4000 0.40085091 -2.7761517 0.21847799 -2.3773051 -0.033769965 110s 4500 0.40189931 -2.7615835 0.20362841 -2.3616937 -0.17414063 110s 5000 0.41734987 -2.7649581 0.19662779 -2.349695 -0.36355203 110s 5500 0.39968404 -2.7679046 0.21787398 -2.370219 -0.2095 110s 6000 0.40475829 -2.8111506 0.26462853 -2.4084161 -0.073266954 110s 6500 0.41521558 -2.7828455 0.21593344 -2.369706 0.044857105 110s 7000 0.37923394 -2.7298781 0.19612107 -2.3525403 -0.41777291 110s 7500 0.42362281 -2.8061905 0.22489406 -2.3846858 0.26268515 110s 8000 0.43091638 -2.8618864 0.27325823 -2.4331247 -0.4441066 110s 8500 0.4921082 -2.8591309 0.21247682 -2.3694833 -0.1929702 110s 9000 0.42828025 -2.7900322 0.20827254 -2.3638934 -0.29757579 110s 9500 0.41689981 -2.7717449 0.21413721 -2.3569296 -0.16341068 110s 10000 0.46694926 -2.8131859 0.21390049 -2.3485714 -0.37713307 110s Loop time of 0.315405 on 2 procs for 10000 steps with 200 atoms 110s 110s Performance: 13696658.940 tau/day, 31705.229 timesteps/s, 6.341 Matom-step/s 110s 99.3% CPU use with 2 MPI tasks x 1 OpenMP threads 110s 110s MPI task timing breakdown: 110s Section | min time | avg time | max time |%varavg| %total 110s --------------------------------------------------------------- 110s Pair | 0.17862 | 0.19004 | 0.20146 | 2.6 | 60.25 110s Neigh | 0.010458 | 0.010848 | 0.011238 | 0.4 | 3.44 110s Comm | 0.074432 | 0.086945 | 0.099459 | 4.2 | 27.57 110s Output | 0.00020666 | 0.00040094 | 0.00059521 | 0.0 | 0.13 110s Modify | 0.016022 | 0.016266 | 0.016509 | 0.2 | 5.16 110s Other | | 0.01091 | | | 3.46 110s 110s Nlocal: 100 ave 101 max 99 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s Nghost: 129 ave 129 max 129 min 110s Histogram: 2 0 0 0 0 0 0 0 0 0 110s Neighs: 827.5 ave 843 max 812 min 110s Histogram: 1 0 0 0 0 0 0 0 0 1 110s 110s Total # of neighbors = 1655 110s Ave neighs/atom = 8.275 110s Neighbor list builds = 679 110s Dangerous builds = 0 110s Total wall time: 0:00:00 111s LAMMPS (7 Feb 2024 - Update 1) 111s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 111s using 1 OpenMP thread(s) per MPI task 111s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 111s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 111s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 111s 1 by 1 by 1 MPI processor grid 111s Created 200 atoms 111s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 111s create_atoms CPU = 0.000 seconds 111s Setting atom values ... 111s 200 settings made for mass 111s Setting atom values ... 111s 200 settings made for dipole/random 111s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 111s Neighbor list info ... 111s update: every = 1 steps, delay = 0 steps, check = yes 111s max neighbors/atom: 2000, page size: 100000 111s master list distance cutoff = 2.8 111s ghost atom cutoff = 2.8 111s binsize = 1.4, bins = 13 13 2 111s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 111s (1) pair lj/cut/dipole/cut, perpetual 111s attributes: half, newton on 111s pair build: half/bin/atomonly/newton 111s stencil: half/bin/2d 111s bin: standard 111s Setting up Verlet run ... 111s Unit style : lj 111s Current step : 0 111s Time step : 0.005 111s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 111s Step Temp E_pair c_erot TotEng Press 111s 0 0 -2.1909822 0 -2.1909822 -2.5750971 111s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 111s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 111s 1500 0.42110221 -2.8019062 0.19532181 -2.3829095 0.18067141 111s 2000 0.39019964 -2.7914873 0.2240704 -2.4032387 -0.40914108 111s 2500 0.40258219 -2.8140936 0.24274448 -2.4135243 -0.33941924 111s 3000 0.41800133 -2.8282056 0.24466746 -2.4122942 -0.090527465 111s 3500 0.40116089 -2.7573067 0.18791549 -2.3581517 -0.10988473 111s 4000 0.44069383 -2.8320262 0.23306586 -2.3935358 -0.16090586 111s 4500 0.39984934 -2.7780055 0.2316558 -2.3801554 -0.060493508 111s 5000 0.38478499 -2.7506484 0.22192236 -2.3677873 -0.20522733 111s 5500 0.41563657 -2.7772758 0.21967501 -2.3637174 -0.21224098 111s 6000 0.4784307 -2.8050644 0.19178566 -2.3290259 -0.084370417 111s 6500 0.45915752 -2.8043874 0.21761744 -2.3475257 0.044744498 111s 7000 0.45492064 -2.7795535 0.20340455 -2.3269074 -0.027924625 111s 7500 0.41266295 -2.7515872 0.22903767 -2.3409876 -0.43730101 111s 8000 0.41905675 -2.7281536 0.19413869 -2.3111921 -0.020762772 111s 8500 0.42951176 -2.7616497 0.22863785 -2.3342855 -0.18867239 111s 9000 0.42532413 -2.748856 0.21378021 -2.3256584 0.015079949 111s 9500 0.42237159 -2.7266142 0.20255034 -2.3063545 -0.15538561 111s 10000 0.40758268 -2.778401 0.2746675 -2.3728562 -0.20811978 111s Loop time of 0.461302 on 1 procs for 10000 steps with 200 atoms 111s 111s Performance: 9364805.673 tau/day, 21677.791 timesteps/s, 4.336 Matom-step/s 111s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 111s 111s MPI task timing breakdown: 111s Section | min time | avg time | max time |%varavg| %total 111s --------------------------------------------------------------- 111s Pair | 0.37859 | 0.37859 | 0.37859 | 0.0 | 82.07 111s Neigh | 0.021564 | 0.021564 | 0.021564 | 0.0 | 4.67 111s Comm | 0.018557 | 0.018557 | 0.018557 | 0.0 | 4.02 111s Output | 0.00014792 | 0.00014792 | 0.00014792 | 0.0 | 0.03 111s Modify | 0.03557 | 0.03557 | 0.03557 | 0.0 | 7.71 111s Other | | 0.006874 | | | 1.49 111s 111s Nlocal: 200 ave 200 max 200 min 111s Histogram: 1 0 0 0 0 0 0 0 0 0 111s Nghost: 162 ave 162 max 162 min 111s Histogram: 1 0 0 0 0 0 0 0 0 0 111s Neighs: 1625 ave 1625 max 1625 min 111s Histogram: 1 0 0 0 0 0 0 0 0 0 111s 111s Total # of neighbors = 1625 111s Ave neighs/atom = 8.125 111s Neighbor list builds = 673 111s Dangerous builds = 0 111s Total wall time: 0:00:00 111s run: OK 111s autopkgtest [17:34:42]: test dipole: -----------------------] 112s dipole PASS 112s autopkgtest [17:34:43]: test dipole: - - - - - - - - - - results - - - - - - - - - - 112s autopkgtest [17:34:43]: test ellipse: preparing testbed 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [17:34:44]: test ellipse: [----------------------- 114s LAMMPS (7 Feb 2024 - Update 1) 114s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 114s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 114s using 1 OpenMP thread(s) per MPI task 114s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 114s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 114s 2 by 1 by 1 MPI processor grid 114s Created 400 atoms 114s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 114s create_atoms CPU = 0.000 seconds 114s Setting atom values ... 114s 45 settings made for type/fraction 114s Setting atom values ... 114s 355 settings made for mass 114s Setting atom values ... 114s 45 settings made for mass 114s Setting atom values ... 114s 355 settings made for shape 114s Setting atom values ... 114s 45 settings made for shape 114s Setting atom values ... 114s 400 settings made for quat/random 114s 355 atoms in group spheroid 114s 114s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 114s 114s Your simulation uses code contributions which should be cited: 114s - pair gayberne command: doi:10.1063/1.3058435 114s The log file lists these citations in BibTeX format. 114s 114s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 114s 114s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 114s Neighbor list info ... 114s update: every = 1 steps, delay = 0 steps, check = yes 114s max neighbors/atom: 2000, page size: 100000 114s master list distance cutoff = 4.8 114s ghost atom cutoff = 4.8 114s binsize = 2.4, bins = 59 59 3 114s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 114s (1) pair gayberne, perpetual 114s attributes: half, newton on 114s pair build: half/bin/atomonly/newton 114s stencil: half/bin/2d 114s bin: standard 114s Setting up Verlet run ... 114s Unit style : lj 114s Current step : 0 114s Time step : 0.002 114s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 114s Step c_rot E_pair TotEng Press Volume 114s 0 2.2718861 0 2.394 0.04788 20000 114s 100 1.7443419 0 1.8381003 0.035765442 20557.278 114s 200 2.2768798 0 2.3992621 0.046544845 20618.928 114s 300 1.8573086 0 1.9571389 0.04239709 18464.842 114s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 114s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 114s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 114s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 114s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 114s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 114s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 114s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 114s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 114s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 114s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 114s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 114s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 114s 1700 1.9434093 -3.2434441 -1.3043926 0.72465776 1136.9866 114s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 114s 1900 2.0618126 -3.2264372 -1.162807 0.93455597 1155.8306 114s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 114s Loop time of 0.31003 on 2 procs for 2000 steps with 400 atoms 114s 114s Performance: 1114729.470 tau/day, 6450.981 timesteps/s, 2.580 Matom-step/s 114s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 114s 114s MPI task timing breakdown: 114s Section | min time | avg time | max time |%varavg| %total 114s --------------------------------------------------------------- 114s Pair | 0.18081 | 0.19184 | 0.20287 | 2.5 | 61.88 114s Neigh | 0.006268 | 0.0063493 | 0.0064306 | 0.1 | 2.05 114s Comm | 0.020699 | 0.031765 | 0.042831 | 6.2 | 10.25 114s Output | 0.0081773 | 0.0082915 | 0.0084057 | 0.1 | 2.67 114s Modify | 0.06771 | 0.068181 | 0.068653 | 0.2 | 21.99 114s Other | | 0.003601 | | | 1.16 114s 114s Nlocal: 200 ave 204 max 196 min 114s Histogram: 1 0 0 0 0 0 0 0 0 1 114s Nghost: 198.5 ave 200 max 197 min 114s Histogram: 1 0 0 0 0 0 0 0 0 1 114s Neighs: 1510.5 ave 1546 max 1475 min 114s Histogram: 1 0 0 0 0 0 0 0 0 1 114s 114s Total # of neighbors = 3021 114s Ave neighs/atom = 7.5525 114s Neighbor list builds = 351 114s Dangerous builds = 0 114s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 114s Setting up Verlet run ... 114s Unit style : lj 114s Current step : 2000 114s Time step : 0.002 114s Per MPI rank memory allocation (min/avg/max) = 6.898 | 6.898 | 6.898 Mbytes 114s Step c_rot E_pair TotEng Press Volume 114s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 114s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 114s 2200 1.9098636 -3.4103342 -1.5286928 0.58806421 1125.7713 114s 2300 1.9069019 -3.4099452 -1.610028 0.63472536 1125.7713 114s 2400 1.9773105 -3.4856993 -1.5268536 0.68904913 1125.7713 114s 2500 2.0027582 -3.5144592 -1.4900205 0.59925284 1125.7713 114s 2600 1.9616624 -3.4744356 -1.5230915 0.26873751 1125.7713 114s 2700 1.8601147 -3.3625731 -1.487211 0.68399849 1125.7713 114s 2800 1.8194349 -3.3190942 -1.5148089 0.6253534 1125.7713 114s 2900 1.8465285 -3.3451867 -1.5508324 0.60146161 1125.7713 114s 3000 1.8894697 -3.3918161 -1.5180286 0.6121204 1125.7713 114s 3100 1.8667782 -3.3664981 -1.5276073 0.54220867 1125.7713 114s 3200 1.8235755 -3.3205753 -1.5178132 0.82786428 1125.7713 114s 3300 1.7937373 -3.2889154 -1.4975068 0.57067419 1125.7713 114s 3400 1.828955 -3.3291496 -1.5067653 1.0360542 1125.7713 114s 3500 1.8536352 -3.3525756 -1.5177124 0.56578139 1125.7713 114s 3600 1.7698175 -3.2647143 -1.5345765 0.50355355 1125.7713 114s 3700 1.7690567 -3.2653073 -1.4812992 0.7916524 1125.7713 114s 3800 1.8637674 -3.3670314 -1.5049293 0.58377083 1125.7713 114s 3900 1.9053975 -3.4123772 -1.4973185 0.64862786 1125.7713 114s 4000 1.878375 -3.3835516 -1.5382418 0.73838477 1125.7713 114s Loop time of 0.32042 on 2 procs for 2000 steps with 400 atoms 114s 114s Performance: 1078585.260 tau/day, 6241.813 timesteps/s, 2.497 Matom-step/s 114s 98.8% CPU use with 2 MPI tasks x 1 OpenMP threads 114s 114s MPI task timing breakdown: 114s Section | min time | avg time | max time |%varavg| %total 114s --------------------------------------------------------------- 114s Pair | 0.23087 | 0.23962 | 0.24838 | 1.8 | 74.78 114s Neigh | 0.0021937 | 0.0022021 | 0.0022105 | 0.0 | 0.69 114s Comm | 0.024479 | 0.033191 | 0.041903 | 4.8 | 10.36 114s Output | 0.0080685 | 0.0081758 | 0.008283 | 0.1 | 2.55 114s Modify | 0.033691 | 0.034094 | 0.034497 | 0.2 | 10.64 114s Other | | 0.003133 | | | 0.98 114s 114s Nlocal: 200 ave 203 max 197 min 114s Histogram: 1 0 0 0 0 0 0 0 0 1 114s Nghost: 207.5 ave 228 max 187 min 114s Histogram: 1 0 0 0 0 0 0 0 0 1 114s Neighs: 1548.5 ave 1608 max 1489 min 114s Histogram: 1 0 0 0 0 0 0 0 0 1 114s 114s Total # of neighbors = 3097 114s Ave neighs/atom = 7.7425 114s Neighbor list builds = 45 114s Dangerous builds = 0 114s Total wall time: 0:00:00 115s LAMMPS (7 Feb 2024 - Update 1) 115s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 115s using 1 OpenMP thread(s) per MPI task 115s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 115s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 115s 1 by 1 by 1 MPI processor grid 115s Created 400 atoms 115s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 115s create_atoms CPU = 0.000 seconds 115s Setting atom values ... 115s 45 settings made for type/fraction 115s Setting atom values ... 115s 355 settings made for mass 115s Setting atom values ... 115s 45 settings made for mass 115s Setting atom values ... 115s 355 settings made for shape 115s Setting atom values ... 115s 45 settings made for shape 115s Setting atom values ... 115s 400 settings made for quat/random 115s 355 atoms in group spheroid 115s 115s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 115s 115s Your simulation uses code contributions which should be cited: 115s - pair gayberne command: doi:10.1063/1.3058435 115s The log file lists these citations in BibTeX format. 115s 115s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 115s 115s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 115s Neighbor list info ... 115s update: every = 1 steps, delay = 0 steps, check = yes 115s max neighbors/atom: 2000, page size: 100000 115s master list distance cutoff = 4.8 115s ghost atom cutoff = 4.8 115s binsize = 2.4, bins = 59 59 3 115s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 115s (1) pair gayberne, perpetual 115s attributes: half, newton on 115s pair build: half/bin/atomonly/newton 115s stencil: half/bin/2d 115s bin: standard 115s Setting up Verlet run ... 115s Unit style : lj 115s Current step : 0 115s Time step : 0.002 115s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 115s Step c_rot E_pair TotEng Press Volume 115s 0 2.2718861 0 2.394 0.04788 20000 115s 100 1.7443419 0 1.8381003 0.035765442 20557.278 115s 200 2.2768798 0 2.3992621 0.046544845 20618.928 115s 300 1.8573086 0 1.9571389 0.04239709 18464.842 115s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 115s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 115s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 115s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 115s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 115s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 115s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 115s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 115s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 115s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 115s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 115s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 115s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 115s 1700 1.9434093 -3.2434441 -1.3043926 0.72465775 1136.9866 115s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 115s 1900 2.0618126 -3.2264372 -1.162807 0.93455596 1155.8306 115s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 115s Loop time of 0.539396 on 1 procs for 2000 steps with 400 atoms 115s 115s Performance: 640716.876 tau/day, 3707.852 timesteps/s, 1.483 Matom-step/s 115s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 115s 115s MPI task timing breakdown: 115s Section | min time | avg time | max time |%varavg| %total 115s --------------------------------------------------------------- 115s Pair | 0.3837 | 0.3837 | 0.3837 | 0.0 | 71.13 116s Neigh | 0.012715 | 0.012715 | 0.012715 | 0.0 | 2.36 116s Comm | 0.0057688 | 0.0057688 | 0.0057688 | 0.0 | 1.07 116s Output | 0.010036 | 0.010036 | 0.010036 | 0.0 | 1.86 116s Modify | 0.12434 | 0.12434 | 0.12434 | 0.0 | 23.05 116s Other | | 0.002834 | | | 0.53 116s 116s Nlocal: 400 ave 400 max 400 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Nghost: 247 ave 247 max 247 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Neighs: 3021 ave 3021 max 3021 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s 116s Total # of neighbors = 3021 116s Ave neighs/atom = 7.5525 116s Neighbor list builds = 351 116s Dangerous builds = 0 116s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 116s Setting up Verlet run ... 116s Unit style : lj 116s Current step : 2000 116s Time step : 0.002 116s Per MPI rank memory allocation (min/avg/max) = 6.939 | 6.939 | 6.939 Mbytes 116s Step c_rot E_pair TotEng Press Volume 116s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 116s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 116s 2200 1.9098635 -3.4103342 -1.5286928 0.58806422 1125.7713 116s 2300 1.9069019 -3.4099452 -1.610028 0.63472566 1125.7713 116s 2400 1.9773106 -3.4856993 -1.5268537 0.6890488 1125.7713 116s 2500 2.0027577 -3.5144587 -1.4900206 0.59925482 1125.7713 116s 2600 1.9616627 -3.4744359 -1.5230914 0.26873643 1125.7713 116s 2700 1.8601143 -3.3625727 -1.4872111 0.68399923 1125.7713 116s 2800 1.8194315 -3.3190907 -1.5148099 0.62535541 1125.7713 116s 2900 1.8465014 -3.3451581 -1.5508257 0.60156027 1125.7713 116s 3000 1.8894895 -3.391836 -1.5180354 0.61205823 1125.7713 116s 3100 1.8668465 -3.3665673 -1.5276094 0.54215927 1125.7713 116s 3200 1.8233438 -3.3203287 -1.5178269 0.82854887 1125.7713 116s 3300 1.794649 -3.2898698 -1.4973919 0.56704285 1125.7713 116s 3400 1.8290008 -3.3295346 -1.5070098 1.0356016 1125.7713 116s 3500 1.8535551 -3.3522046 -1.5121703 0.5801663 1125.7713 116s 3600 1.7849961 -3.2815422 -1.5326244 0.45764466 1125.7713 116s 3700 1.7695363 -3.2652329 -1.4772023 0.84882871 1125.7713 116s 3800 1.8713051 -3.3743092 -1.5234548 0.38004095 1125.7713 116s 3900 1.9336013 -3.4411866 -1.4980326 0.64679675 1125.7713 116s 4000 1.9271117 -3.4346745 -1.5345035 0.4492419 1125.7713 116s Loop time of 0.571341 on 1 procs for 2000 steps with 400 atoms 116s 116s Performance: 604892.671 tau/day, 3500.536 timesteps/s, 1.400 Matom-step/s 116s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 116s 116s MPI task timing breakdown: 116s Section | min time | avg time | max time |%varavg| %total 116s --------------------------------------------------------------- 116s Pair | 0.48076 | 0.48076 | 0.48076 | 0.0 | 84.15 116s Neigh | 0.0043112 | 0.0043112 | 0.0043112 | 0.0 | 0.75 116s Comm | 0.0052562 | 0.0052562 | 0.0052562 | 0.0 | 0.92 116s Output | 0.0099571 | 0.0099571 | 0.0099571 | 0.0 | 1.74 116s Modify | 0.068841 | 0.068841 | 0.068841 | 0.0 | 12.05 116s Other | | 0.002219 | | | 0.39 116s 116s Nlocal: 400 ave 400 max 400 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Nghost: 242 ave 242 max 242 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s Neighs: 3080 ave 3080 max 3080 min 116s Histogram: 1 0 0 0 0 0 0 0 0 0 116s 116s Total # of neighbors = 3080 116s Ave neighs/atom = 7.7 116s Neighbor list builds = 45 116s Dangerous builds = 0 116s Total wall time: 0:00:01 116s LAMMPS (7 Feb 2024 - Update 1) 116s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 116s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 116s using 1 OpenMP thread(s) per MPI task 116s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 116s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 116s 2 by 1 by 1 MPI processor grid 116s Created 400 atoms 116s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 116s create_atoms CPU = 0.001 seconds 116s Setting atom values ... 116s 45 settings made for type/fraction 116s Setting atom values ... 116s 355 settings made for mass 116s Setting atom values ... 116s 45 settings made for mass 116s Setting atom values ... 116s 355 settings made for shape 116s Setting atom values ... 116s 45 settings made for shape 116s Setting atom values ... 116s 400 settings made for quat/random 116s 355 atoms in group spheroid 116s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 116s Neighbor list info ... 116s update: every = 1 steps, delay = 0 steps, check = yes 116s max neighbors/atom: 2000, page size: 100000 116s master list distance cutoff = 4.8 116s ghost atom cutoff = 4.8 116s binsize = 2.4, bins = 59 59 3 116s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 116s (1) pair resquared, perpetual 116s attributes: half, newton on 116s pair build: half/bin/atomonly/newton 116s stencil: half/bin/2d 116s bin: standard 116s Setting up Verlet run ... 116s Unit style : lj 116s Current step : 0 116s Time step : 0.002 116s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 116s Step c_rot E_pair TotEng Press Volume 116s 0 2.2718861 0 2.394 0.04788 20000 116s 100 1.7443419 0 1.8381003 0.035765442 20557.278 116s 200 2.2768798 0 2.3992621 0.046544845 20618.928 116s 300 1.8573086 0 1.9571389 0.04239709 18464.842 116s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 116s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 116s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 116s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 116s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 116s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 116s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 116s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 116s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 116s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 116s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 116s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 116s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 117s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 117s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 117s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 117s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 117s Loop time of 0.429944 on 2 procs for 2000 steps with 400 atoms 117s 117s Performance: 803825.925 tau/day, 4651.770 timesteps/s, 1.861 Matom-step/s 117s 99.6% CPU use with 2 MPI tasks x 1 OpenMP threads 117s 117s MPI task timing breakdown: 117s Section | min time | avg time | max time |%varavg| %total 117s --------------------------------------------------------------- 117s Pair | 0.31881 | 0.32054 | 0.32226 | 0.3 | 74.55 117s Neigh | 0.0055411 | 0.0056134 | 0.0056857 | 0.1 | 1.31 117s Comm | 0.021957 | 0.023656 | 0.025356 | 1.1 | 5.50 117s Output | 0.0086301 | 0.008753 | 0.0088758 | 0.1 | 2.04 117s Modify | 0.067613 | 0.067897 | 0.068182 | 0.1 | 15.79 117s Other | | 0.003489 | | | 0.81 117s 117s Nlocal: 200 ave 206 max 194 min 117s Histogram: 1 0 0 0 0 0 0 0 0 1 117s Nghost: 168.5 ave 169 max 168 min 117s Histogram: 1 0 0 0 0 0 0 0 0 1 117s Neighs: 941 ave 998 max 884 min 117s Histogram: 1 0 0 0 0 0 0 0 0 1 117s 117s Total # of neighbors = 1882 117s Ave neighs/atom = 4.705 117s Neighbor list builds = 415 117s Dangerous builds = 0 117s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 117s Setting up Verlet run ... 117s Unit style : lj 117s Current step : 2000 117s Time step : 0.002 117s Per MPI rank memory allocation (min/avg/max) = 6.889 | 6.889 | 6.889 Mbytes 117s Step c_rot E_pair TotEng Press Volume 117s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 117s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 117s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 117s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 117s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 117s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 117s 2600 1.9587508 0.18695271 2.1506896 1.3513902 1669.0751 117s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 117s 2800 1.9870267 0.15716585 2.1207709 1.2045104 1669.0751 117s 2900 1.9230662 0.224487 2.1353571 1.4964288 1669.0751 117s 3000 2.0042113 0.13903203 2.1149787 1.2100649 1669.0751 117s 3100 1.9543695 0.19149462 2.0984705 1.3409712 1669.0751 117s 3200 1.9991114 0.14441986 2.1292354 1.1756472 1669.0751 117s 3300 1.9629782 0.18246612 2.1463675 1.3162684 1669.0751 117s 3400 1.9403529 0.20630278 2.168704 1.4952817 1669.0751 117s 3500 1.9887414 0.15531284 2.1485278 1.2530438 1669.0751 117s 3600 1.9732705 0.17171749 2.1755758 1.2958612 1669.0751 117s 3700 2.0072859 0.13576438 2.1212392 1.1421261 1669.0751 117s 3800 1.9581319 0.18762046 2.1743395 1.371088 1669.0751 117s 3900 1.9761472 0.16864775 2.1429629 1.3037468 1669.0751 117s 4000 1.9615776 0.18391221 2.1244703 1.4180052 1669.0751 117s Loop time of 0.675615 on 2 procs for 2000 steps with 400 atoms 117s 117s Performance: 511534.296 tau/day, 2960.268 timesteps/s, 1.184 Matom-step/s 117s 99.6% CPU use with 2 MPI tasks x 1 OpenMP threads 117s 117s MPI task timing breakdown: 117s Section | min time | avg time | max time |%varavg| %total 117s --------------------------------------------------------------- 117s Pair | 0.57654 | 0.58818 | 0.59981 | 1.5 | 87.06 117s Neigh | 0.0017136 | 0.0017781 | 0.0018426 | 0.2 | 0.26 117s Comm | 0.027465 | 0.039085 | 0.050705 | 5.9 | 5.79 117s Output | 0.0088936 | 0.0090235 | 0.0091535 | 0.1 | 1.34 117s Modify | 0.033729 | 0.034245 | 0.034761 | 0.3 | 5.07 117s Other | | 0.003308 | | | 0.49 117s 117s Nlocal: 200 ave 204 max 196 min 117s Histogram: 1 0 0 0 0 0 0 0 0 1 117s Nghost: 159.5 ave 161 max 158 min 117s Histogram: 1 0 0 0 0 0 0 0 0 1 117s Neighs: 936 ave 1007 max 865 min 117s Histogram: 1 0 0 0 0 0 0 0 0 1 117s 117s Total # of neighbors = 1872 117s Ave neighs/atom = 4.68 117s Neighbor list builds = 50 117s Dangerous builds = 0 117s Total wall time: 0:00:01 118s LAMMPS (7 Feb 2024 - Update 1) 118s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 118s using 1 OpenMP thread(s) per MPI task 118s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 118s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 118s 1 by 1 by 1 MPI processor grid 118s Created 400 atoms 118s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 118s create_atoms CPU = 0.000 seconds 118s Setting atom values ... 118s 45 settings made for type/fraction 118s Setting atom values ... 118s 355 settings made for mass 118s Setting atom values ... 118s 45 settings made for mass 118s Setting atom values ... 118s 355 settings made for shape 118s Setting atom values ... 118s 45 settings made for shape 118s Setting atom values ... 118s 400 settings made for quat/random 118s 355 atoms in group spheroid 118s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 118s Neighbor list info ... 118s update: every = 1 steps, delay = 0 steps, check = yes 118s max neighbors/atom: 2000, page size: 100000 118s master list distance cutoff = 4.8 118s ghost atom cutoff = 4.8 118s binsize = 2.4, bins = 59 59 3 118s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 118s (1) pair resquared, perpetual 118s attributes: half, newton on 118s pair build: half/bin/atomonly/newton 118s stencil: half/bin/2d 118s bin: standard 118s Setting up Verlet run ... 118s Unit style : lj 118s Current step : 0 118s Time step : 0.002 118s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 118s Step c_rot E_pair TotEng Press Volume 118s 0 2.2718861 0 2.394 0.04788 20000 118s 100 1.7443419 0 1.8381003 0.035765442 20557.278 118s 200 2.2768798 0 2.3992621 0.046544845 20618.928 118s 300 1.8573086 0 1.9571389 0.04239709 18464.842 118s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 118s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 118s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 118s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 118s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 118s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 118s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 118s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 118s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 118s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 118s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 118s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 118s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 118s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 118s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 118s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 118s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 118s Loop time of 0.794134 on 1 procs for 2000 steps with 400 atoms 118s 118s Performance: 435190.812 tau/day, 2518.465 timesteps/s, 1.007 Matom-step/s 118s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads 118s 118s MPI task timing breakdown: 118s Section | min time | avg time | max time |%varavg| %total 118s --------------------------------------------------------------- 118s Pair | 0.64168 | 0.64168 | 0.64168 | 0.0 | 80.80 118s Neigh | 0.011309 | 0.011309 | 0.011309 | 0.0 | 1.42 118s Comm | 0.0047677 | 0.0047677 | 0.0047677 | 0.0 | 0.60 118s Output | 0.010231 | 0.010231 | 0.010231 | 0.0 | 1.29 118s Modify | 0.12315 | 0.12315 | 0.12315 | 0.0 | 15.51 120s Other | | 0.002995 | | | 0.38 120s 120s Nlocal: 400 ave 400 max 400 min 120s Histogram: 1 0 0 0 0 0 0 0 0 0 120s Nghost: 212 ave 212 max 212 min 120s Histogram: 1 0 0 0 0 0 0 0 0 0 120s Neighs: 1882 ave 1882 max 1882 min 120s Histogram: 1 0 0 0 0 0 0 0 0 0 120s 120s Total # of neighbors = 1882 120s Ave neighs/atom = 4.705 120s Neighbor list builds = 415 120s Dangerous builds = 0 120s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 120s Setting up Verlet run ... 120s Unit style : lj 120s Current step : 2000 120s Time step : 0.002 120s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 120s Step c_rot E_pair TotEng Press Volume 120s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 120s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 120s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 120s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 120s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 120s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 120s 2600 1.9587508 0.18695272 2.1506896 1.3513902 1669.0751 120s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 120s 2800 1.9870267 0.15716584 2.1207709 1.2045103 1669.0751 120s 2900 1.9230661 0.22448715 2.1353571 1.4964295 1669.0751 120s 3000 2.0042113 0.13903205 2.1149788 1.2100651 1669.0751 120s 3100 1.9543696 0.19149451 2.0984704 1.3409708 1669.0751 120s 3200 1.9991114 0.14441986 2.1292353 1.1756471 1669.0751 120s 3300 1.9629782 0.18246604 2.1463674 1.3162682 1669.0751 120s 3400 1.9403526 0.2063031 2.1687041 1.4952828 1669.0751 120s 3500 1.9887417 0.15531257 2.1485281 1.2530419 1669.0751 120s 3600 1.9732713 0.17171668 2.1755748 1.2958589 1669.0751 120s 3700 2.0072841 0.13576627 2.1212376 1.1421332 1669.0751 120s 3800 1.9581293 0.18762314 2.1743434 1.3710999 1669.0751 120s 3900 1.9761567 0.16863762 2.1429558 1.303685 1669.0751 120s 4000 1.9615813 0.18390829 2.1244694 1.4179775 1669.0751 120s Loop time of 1.26762 on 1 procs for 2000 steps with 400 atoms 120s 120s Performance: 272636.163 tau/day, 1577.756 timesteps/s, 631.102 katom-step/s 120s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 120s 120s MPI task timing breakdown: 120s Section | min time | avg time | max time |%varavg| %total 120s --------------------------------------------------------------- 120s Pair | 1.1784 | 1.1784 | 1.1784 | 0.0 | 92.96 120s Neigh | 0.0034903 | 0.0034903 | 0.0034903 | 0.0 | 0.28 120s Comm | 0.0050791 | 0.0050791 | 0.0050791 | 0.0 | 0.40 120s Output | 0.010372 | 0.010372 | 0.010372 | 0.0 | 0.82 120s Modify | 0.067896 | 0.067896 | 0.067896 | 0.0 | 5.36 120s Other | | 0.002416 | | | 0.19 120s 120s Nlocal: 400 ave 400 max 400 min 120s Histogram: 1 0 0 0 0 0 0 0 0 0 120s Nghost: 206 ave 206 max 206 min 120s Histogram: 1 0 0 0 0 0 0 0 0 0 120s Neighs: 1872 ave 1872 max 1872 min 120s Histogram: 1 0 0 0 0 0 0 0 0 0 120s 120s Total # of neighbors = 1872 120s Ave neighs/atom = 4.68 120s Neighbor list builds = 50 120s Dangerous builds = 0 120s Total wall time: 0:00:02 120s run: OK 120s autopkgtest [17:34:51]: test ellipse: -----------------------] 120s ellipse PASS 120s autopkgtest [17:34:51]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 121s autopkgtest [17:34:52]: test flow: preparing testbed 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Starting pkgProblemResolver with broken count: 0 121s Starting 2 pkgProblemResolver with broken count: 0 121s Done 121s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 122s autopkgtest [17:34:53]: test flow: [----------------------- 122s LAMMPS (7 Feb 2024 - Update 1) 122s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 122s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 122s using 1 OpenMP thread(s) per MPI task 122s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 122s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 122s 2 by 1 by 1 MPI processor grid 122s Created 420 atoms 122s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 122s create_atoms CPU = 0.000 seconds 122s 60 atoms in group lower 122s 60 atoms in group upper 122s 120 atoms in group boundary 122s 300 atoms in group flow 122s Setting atom values ... 122s 60 settings made for type 122s Setting atom values ... 122s 60 settings made for type 122s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 122s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 122s Neighbor list info ... 122s update: every = 1 steps, delay = 5 steps, check = yes 122s max neighbors/atom: 2000, page size: 100000 122s master list distance cutoff = 1.42246 122s ghost atom cutoff = 1.42246 122s binsize = 0.71123, bins = 37 32 1 122s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 122s (1) pair lj/cut, perpetual 122s attributes: half, newton on 122s pair build: half/bin/atomonly/newton 122s stencil: half/bin/2d 122s bin: standard 122s Setting up Verlet run ... 122s Unit style : lj 122s Current step : 0 122s Time step : 0.003 122s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 122s Step Temp E_pair E_mol TotEng Press Volume 122s 0 1 0 0 0.71190476 0.52314537 571.54286 122s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 122s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 122s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 122s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 122s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 122s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 122s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 122s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 122s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 122s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 123s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 123s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 123s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 123s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 123s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 123s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 123s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 123s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 123s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 123s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 123s Loop time of 0.103948 on 2 procs for 10000 steps with 420 atoms 123s 123s Performance: 24935558.369 tau/day, 96202.000 timesteps/s, 40.405 Matom-step/s 123s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 123s 123s MPI task timing breakdown: 123s Section | min time | avg time | max time |%varavg| %total 123s --------------------------------------------------------------- 123s Pair | 0.020823 | 0.020884 | 0.020946 | 0.0 | 20.09 123s Neigh | 0.011347 | 0.011405 | 0.011463 | 0.1 | 10.97 123s Comm | 0.045744 | 0.046253 | 0.046763 | 0.2 | 44.50 123s Output | 0.00015938 | 0.00031753 | 0.00047568 | 0.0 | 0.31 123s Modify | 0.015344 | 0.015375 | 0.015406 | 0.0 | 14.79 123s Other | | 0.009713 | | | 9.34 123s 123s Nlocal: 210 ave 213 max 207 min 123s Histogram: 1 0 0 0 0 0 0 0 0 1 123s Nghost: 50.5 ave 51 max 50 min 123s Histogram: 1 0 0 0 0 0 0 0 0 1 123s Neighs: 480.5 ave 492 max 469 min 123s Histogram: 1 0 0 0 0 0 0 0 0 1 123s 123s Total # of neighbors = 961 123s Ave neighs/atom = 2.2880952 123s Neighbor list builds = 964 123s Dangerous builds = 0 123s Total wall time: 0:00:00 123s LAMMPS (7 Feb 2024 - Update 1) 123s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 123s using 1 OpenMP thread(s) per MPI task 123s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 123s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 123s 1 by 1 by 1 MPI processor grid 123s Created 420 atoms 123s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 123s create_atoms CPU = 0.000 seconds 123s 60 atoms in group lower 123s 60 atoms in group upper 123s 120 atoms in group boundary 123s 300 atoms in group flow 123s Setting atom values ... 123s 60 settings made for type 123s Setting atom values ... 123s 60 settings made for type 123s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 123s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 123s Neighbor list info ... 123s update: every = 1 steps, delay = 5 steps, check = yes 123s max neighbors/atom: 2000, page size: 100000 123s master list distance cutoff = 1.42246 123s ghost atom cutoff = 1.42246 123s binsize = 0.71123, bins = 37 32 1 123s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 123s (1) pair lj/cut, perpetual 123s attributes: half, newton on 123s pair build: half/bin/atomonly/newton 123s stencil: half/bin/2d 123s bin: standard 123s Setting up Verlet run ... 123s Unit style : lj 123s Current step : 0 123s Time step : 0.003 123s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 123s Step Temp E_pair E_mol TotEng Press Volume 123s 0 1 0 0 0.71190476 0.52314537 571.54286 123s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 123s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 123s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 123s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 123s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 123s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 123s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 123s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 123s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 123s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 123s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 123s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 123s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 123s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 123s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 123s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 123s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 123s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 123s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 123s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 123s Loop time of 0.106704 on 1 procs for 10000 steps with 420 atoms 123s 123s Performance: 24291519.603 tau/day, 93717.282 timesteps/s, 39.361 Matom-step/s 123s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 123s 123s MPI task timing breakdown: 123s Section | min time | avg time | max time |%varavg| %total 123s --------------------------------------------------------------- 123s Pair | 0.04078 | 0.04078 | 0.04078 | 0.0 | 38.22 123s Neigh | 0.022326 | 0.022326 | 0.022326 | 0.0 | 20.92 123s Comm | 0.0037346 | 0.0037346 | 0.0037346 | 0.0 | 3.50 123s Output | 0.000118 | 0.000118 | 0.000118 | 0.0 | 0.11 123s Modify | 0.031322 | 0.031322 | 0.031322 | 0.0 | 29.35 123s Other | | 0.008422 | | | 7.89 123s 123s Nlocal: 420 ave 420 max 420 min 123s Histogram: 1 0 0 0 0 0 0 0 0 0 123s Nghost: 46 ave 46 max 46 min 123s Histogram: 1 0 0 0 0 0 0 0 0 0 123s Neighs: 952 ave 952 max 952 min 123s Histogram: 1 0 0 0 0 0 0 0 0 0 123s 123s Total # of neighbors = 952 123s Ave neighs/atom = 2.2666667 123s Neighbor list builds = 996 123s Dangerous builds = 0 123s Total wall time: 0:00:00 123s LAMMPS (7 Feb 2024 - Update 1) 123s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 123s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 123s using 1 OpenMP thread(s) per MPI task 123s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 123s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 123s 2 by 1 by 1 MPI processor grid 123s Created 420 atoms 123s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 123s create_atoms CPU = 0.000 seconds 123s 60 atoms in group lower 123s 60 atoms in group upper 123s 120 atoms in group boundary 123s 300 atoms in group flow 123s Setting atom values ... 123s 60 settings made for type 123s Setting atom values ... 123s 60 settings made for type 123s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 123s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 123s Neighbor list info ... 123s update: every = 1 steps, delay = 5 steps, check = yes 123s max neighbors/atom: 2000, page size: 100000 123s master list distance cutoff = 1.42246 123s ghost atom cutoff = 1.42246 123s binsize = 0.71123, bins = 37 32 1 123s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 123s (1) pair lj/cut, perpetual 123s attributes: half, newton on 123s pair build: half/bin/atomonly/newton 123s stencil: half/bin/2d 123s bin: standard 123s Setting up Verlet run ... 123s Unit style : lj 123s Current step : 0 123s Time step : 0.003 123s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 123s Step Temp E_pair E_mol TotEng Press Volume 123s 0 1 0 0 0.71190476 0.52314537 571.54286 123s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 123s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 123s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 123s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 123s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 123s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 123s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 123s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 123s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 123s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 123s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 123s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 123s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 123s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 123s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 123s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 123s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 123s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 123s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 123s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 123s Loop time of 0.121899 on 2 procs for 10000 steps with 420 atoms 123s 123s Performance: 21263436.916 tau/day, 82034.865 timesteps/s, 34.455 Matom-step/s 123s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 123s 123s MPI task timing breakdown: 123s Section | min time | avg time | max time |%varavg| %total 123s --------------------------------------------------------------- 123s Pair | 0.022798 | 0.022992 | 0.023186 | 0.1 | 18.86 123s Neigh | 0.0073106 | 0.0073121 | 0.0073135 | 0.0 | 6.00 123s Comm | 0.045879 | 0.046234 | 0.046589 | 0.2 | 37.93 123s Output | 0.00015942 | 0.00036787 | 0.00057633 | 0.0 | 0.30 123s Modify | 0.034885 | 0.035104 | 0.035322 | 0.1 | 28.80 123s Other | | 0.00989 | | | 8.11 123s 123s Nlocal: 210 ave 213 max 207 min 123s Histogram: 1 0 0 0 0 0 0 0 0 1 123s Nghost: 50 ave 51 max 49 min 123s Histogram: 1 0 0 0 0 0 0 0 0 1 123s Neighs: 558.5 ave 573 max 544 min 123s Histogram: 1 0 0 0 0 0 0 0 0 1 123s 123s Total # of neighbors = 1117 123s Ave neighs/atom = 2.6595238 123s Neighbor list builds = 562 123s Dangerous builds = 0 123s Total wall time: 0:00:00 124s LAMMPS (7 Feb 2024 - Update 1) 124s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 124s using 1 OpenMP thread(s) per MPI task 124s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 124s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 124s 1 by 1 by 1 MPI processor grid 124s Created 420 atoms 124s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 124s create_atoms CPU = 0.000 seconds 124s 60 atoms in group lower 124s 60 atoms in group upper 124s 120 atoms in group boundary 124s 300 atoms in group flow 124s Setting atom values ... 124s 60 settings made for type 124s Setting atom values ... 124s 60 settings made for type 124s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 124s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 124s Neighbor list info ... 124s update: every = 1 steps, delay = 5 steps, check = yes 124s max neighbors/atom: 2000, page size: 100000 124s master list distance cutoff = 1.42246 124s ghost atom cutoff = 1.42246 124s binsize = 0.71123, bins = 37 32 1 124s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 124s (1) pair lj/cut, perpetual 124s attributes: half, newton on 124s pair build: half/bin/atomonly/newton 124s stencil: half/bin/2d 124s bin: standard 124s Setting up Verlet run ... 124s Unit style : lj 124s Current step : 0 124s Time step : 0.003 124s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 124s Step Temp E_pair E_mol TotEng Press Volume 124s 0 1 0 0 0.71190476 0.52314537 571.54286 124s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 124s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 124s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 124s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 124s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 124s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 124s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 124s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 124s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 124s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 124s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 124s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 124s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 124s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 124s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 124s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 124s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 124s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 124s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 124s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 124s Loop time of 0.128742 on 1 procs for 10000 steps with 420 atoms 124s 124s Performance: 20133252.303 tau/day, 77674.585 timesteps/s, 32.623 Matom-step/s 124s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 124s 124s MPI task timing breakdown: 124s Section | min time | avg time | max time |%varavg| %total 124s --------------------------------------------------------------- 124s Pair | 0.043128 | 0.043128 | 0.043128 | 0.0 | 33.50 124s Neigh | 0.014117 | 0.014117 | 0.014117 | 0.0 | 10.97 124s Comm | 0.003344 | 0.003344 | 0.003344 | 0.0 | 2.60 124s Output | 0.00013842 | 0.00013842 | 0.00013842 | 0.0 | 0.11 124s Modify | 0.060038 | 0.060038 | 0.060038 | 0.0 | 46.63 124s Other | | 0.007977 | | | 6.20 124s 124s Nlocal: 420 ave 420 max 420 min 124s Histogram: 1 0 0 0 0 0 0 0 0 0 124s Nghost: 48 ave 48 max 48 min 124s Histogram: 1 0 0 0 0 0 0 0 0 0 124s Neighs: 1124 ave 1124 max 1124 min 124s Histogram: 1 0 0 0 0 0 0 0 0 0 124s 124s Total # of neighbors = 1124 124s Ave neighs/atom = 2.6761905 124s Neighbor list builds = 561 124s Dangerous builds = 0 124s Total wall time: 0:00:00 124s run: OK 124s autopkgtest [17:34:55]: test flow: -----------------------] 125s flow PASS 125s autopkgtest [17:34:56]: test flow: - - - - - - - - - - results - - - - - - - - - - 125s autopkgtest [17:34:56]: test friction: preparing testbed 125s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s Starting pkgProblemResolver with broken count: 0 125s Starting 2 pkgProblemResolver with broken count: 0 125s Done 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [17:34:57]: test friction: [----------------------- 127s LAMMPS (7 Feb 2024 - Update 1) 127s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 127s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 127s using 1 OpenMP thread(s) per MPI task 127s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 127s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 127s 2 by 1 by 1 MPI processor grid 127s Created 750 atoms 127s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 127s create_atoms CPU = 0.000 seconds 127s Created 750 atoms 127s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 127s create_atoms CPU = 0.000 seconds 127s Created 112 atoms 127s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 127s create_atoms CPU = 0.000 seconds 127s Created 112 atoms 127s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 127s create_atoms CPU = 0.000 seconds 127s 750 atoms in group lo 127s 862 atoms in group lo 127s 750 atoms in group hi 127s 862 atoms in group hi 127s 150 atoms in group lo-fixed 127s 150 atoms in group hi-fixed 127s 300 atoms in group boundary 127s 1424 atoms in group mobile 127s Setting atom values ... 127s 150 settings made for type 127s Setting atom values ... 127s 150 settings made for type 127s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 127s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 127s Neighbor list info ... 127s update: every = 1 steps, delay = 5 steps, check = yes 127s max neighbors/atom: 2000, page size: 100000 127s master list distance cutoff = 2.8 127s ghost atom cutoff = 2.8 127s binsize = 1.4, bins = 41 31 1 127s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 127s (1) pair lj/cut, perpetual 127s attributes: half, newton on 127s pair build: half/bin/atomonly/newton 127s stencil: half/bin/2d 127s bin: standard 127s Setting up Verlet run ... 127s Unit style : lj 127s Current step : 0 127s Time step : 0.0025 127s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 127s Step Temp E_pair E_mol TotEng Press Volume 127s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 127s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 127s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 127s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 127s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 127s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 127s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 127s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 127s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 127s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 127s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 127s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 127s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 127s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 128s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 128s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 128s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 128s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 128s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 128s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 128s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 128s Loop time of 1.18528 on 2 procs for 20000 steps with 1724 atoms 128s 128s Performance: 3644716.946 tau/day, 16873.690 timesteps/s, 29.090 Matom-step/s 128s 99.7% CPU use with 2 MPI tasks x 1 OpenMP threads 128s 128s MPI task timing breakdown: 128s Section | min time | avg time | max time |%varavg| %total 128s --------------------------------------------------------------- 128s Pair | 0.68858 | 0.74562 | 0.80266 | 6.6 | 62.91 128s Neigh | 0.060918 | 0.0686 | 0.076281 | 2.9 | 5.79 128s Comm | 0.13937 | 0.20451 | 0.26964 | 14.4 | 17.25 128s Output | 0.00033956 | 0.0006501 | 0.00096064 | 0.0 | 0.05 128s Modify | 0.11235 | 0.11991 | 0.12748 | 2.2 | 10.12 128s Other | | 0.04598 | | | 3.88 128s 128s Nlocal: 862 ave 868 max 856 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s Nghost: 160.5 ave 161 max 160 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s Neighs: 7178.5 ave 7223 max 7134 min 128s Histogram: 1 0 0 0 0 0 0 0 0 1 128s 128s Total # of neighbors = 14357 128s Ave neighs/atom = 8.3277262 128s Neighbor list builds = 716 128s Dangerous builds = 0 128s Total wall time: 0:00:01 128s LAMMPS (7 Feb 2024 - Update 1) 130s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 130s using 1 OpenMP thread(s) per MPI task 130s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 130s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 130s 1 by 1 by 1 MPI processor grid 130s Created 750 atoms 130s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 130s create_atoms CPU = 0.000 seconds 130s Created 750 atoms 130s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 130s create_atoms CPU = 0.000 seconds 130s Created 112 atoms 130s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 130s create_atoms CPU = 0.000 seconds 130s Created 112 atoms 130s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 130s create_atoms CPU = 0.000 seconds 130s 750 atoms in group lo 130s 862 atoms in group lo 130s 750 atoms in group hi 130s 862 atoms in group hi 130s 150 atoms in group lo-fixed 130s 150 atoms in group hi-fixed 130s 300 atoms in group boundary 130s 1424 atoms in group mobile 130s Setting atom values ... 130s 150 settings made for type 130s Setting atom values ... 130s 150 settings made for type 130s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 130s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 130s Neighbor list info ... 130s update: every = 1 steps, delay = 5 steps, check = yes 130s max neighbors/atom: 2000, page size: 100000 130s master list distance cutoff = 2.8 130s ghost atom cutoff = 2.8 130s binsize = 1.4, bins = 41 31 1 130s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 130s (1) pair lj/cut, perpetual 130s attributes: half, newton on 130s pair build: half/bin/atomonly/newton 130s stencil: half/bin/2d 130s bin: standard 130s Setting up Verlet run ... 130s Unit style : lj 130s Current step : 0 130s Time step : 0.0025 130s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 130s Step Temp E_pair E_mol TotEng Press Volume 130s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 130s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 130s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 130s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 130s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 130s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 130s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 130s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 130s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 130s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 130s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 130s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 130s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 130s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 130s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 130s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 130s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 130s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 130s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 130s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 130s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 130s Loop time of 1.9193 on 1 procs for 20000 steps with 1724 atoms 130s 130s Performance: 2250824.959 tau/day, 10420.486 timesteps/s, 17.965 Matom-step/s 130s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 130s 130s MPI task timing breakdown: 130s Section | min time | avg time | max time |%varavg| %total 130s --------------------------------------------------------------- 130s Pair | 1.4921 | 1.4921 | 1.4921 | 0.0 | 77.74 130s Neigh | 0.122 | 0.122 | 0.122 | 0.0 | 6.36 130s Comm | 0.015076 | 0.015076 | 0.015076 | 0.0 | 0.79 130s Output | 0.00042084 | 0.00042084 | 0.00042084 | 0.0 | 0.02 130s Modify | 0.23771 | 0.23771 | 0.23771 | 0.0 | 12.39 130s Other | | 0.05204 | | | 2.71 130s 130s Nlocal: 1724 ave 1724 max 1724 min 130s Histogram: 1 0 0 0 0 0 0 0 0 0 130s Nghost: 144 ave 144 max 144 min 130s Histogram: 1 0 0 0 0 0 0 0 0 0 130s Neighs: 14364 ave 14364 max 14364 min 130s Histogram: 1 0 0 0 0 0 0 0 0 0 130s 130s Total # of neighbors = 14364 130s Ave neighs/atom = 8.3317865 130s Neighbor list builds = 714 130s Dangerous builds = 0 130s Total wall time: 0:00:01 130s run: OK 130s autopkgtest [17:35:01]: test friction: -----------------------] 131s friction PASS 131s autopkgtest [17:35:02]: test friction: - - - - - - - - - - results - - - - - - - - - - 131s autopkgtest [17:35:02]: test hugo: preparing testbed 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s autopkgtest [17:35:03]: test hugo: [----------------------- 133s LAMMPS (7 Feb 2024 - Update 1) 133s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 133s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 133s using 1 OpenMP thread(s) per MPI task 133s Lattice spacing in x,y,z = 1.4142135 2 2 133s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 133s 1 by 1 by 2 MPI processor grid 133s Created 1000 atoms 133s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 133s create_atoms CPU = 0.000 seconds 133s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 133s Neighbor list info ... 133s update: every = 1 steps, delay = 0 steps, check = yes 133s max neighbors/atom: 2000, page size: 100000 133s master list distance cutoff = 1.8475372 133s ghost atom cutoff = 1.8475372 133s binsize = 0.92376862, bins = 8 11 11 133s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 133s (1) pair lj/cubic, perpetual 133s attributes: half, newton on 133s pair build: half/bin/atomonly/newton 133s stencil: half/bin/3d 133s bin: standard 133s Setting up cg style minimization ... 133s Unit style : lj 133s Current step : 0 133s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 133s (src/min.cpp:219) 133s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 133s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 133s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 133s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 133s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 133s Loop time of 0.0191891 on 2 procs for 134 steps with 1000 atoms 133s 133s 99.4% CPU use with 2 MPI tasks x 1 OpenMP threads 133s 133s Minimization stats: 133s Stopping criterion = force tolerance 133s Energy initial, next-to-last, final = 133s -6.29375358358574 -6.33442531515467 -6.33442531515467 133s Force two-norm initial, final = 3395.2895 5.5900884e-10 133s Force max component initial, final = 1960.2713 3.2516979e-10 133s Final line search alpha, max atom move = 1 3.2516979e-10 133s Iterations, force evaluations = 134 137 133s 133s MPI task timing breakdown: 133s Section | min time | avg time | max time |%varavg| %total 133s --------------------------------------------------------------- 133s Pair | 0.0098343 | 0.010632 | 0.011429 | 0.8 | 55.40 133s Neigh | 0.00027188 | 0.00030073 | 0.00032959 | 0.0 | 1.57 133s Comm | 0.0036156 | 0.0043839 | 0.0051521 | 1.2 | 22.85 133s Output | 1.2188e-05 | 2.1882e-05 | 3.1577e-05 | 0.0 | 0.11 133s Modify | 0 | 0 | 0 | 0.0 | 0.00 133s Other | | 0.003851 | | | 20.07 133s 133s Nlocal: 500 ave 550 max 450 min 133s Histogram: 1 0 0 0 0 0 0 0 0 1 133s Nghost: 1214 ave 1264 max 1164 min 133s Histogram: 1 0 0 0 0 0 0 0 0 1 133s Neighs: 10500 ave 11550 max 9450 min 133s Histogram: 1 0 0 0 0 0 0 0 0 1 133s 133s Total # of neighbors = 21000 133s Ave neighs/atom = 21 133s Neighbor list builds = 1 133s Dangerous builds = 0 133s System init for write_restart ... 133s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 133s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 133s using 1 OpenMP thread(s) per MPI task 133s Reading restart file ... 133s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 133s restoring atom style atomic from restart 133s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 133s 1 by 1 by 2 MPI processor grid 133s restoring pair style lj/cubic from restart 133s 1000 atoms 133s read_restart CPU = 0.001 seconds 133s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 133s Neighbor list info ... 133s update: every = 1 steps, delay = 0 steps, check = yes 133s max neighbors/atom: 2000, page size: 100000 133s master list distance cutoff = 1.7475372 133s ghost atom cutoff = 1.7475372 133s binsize = 0.87376862, bins = 8 12 12 133s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 133s (1) pair lj/cubic, perpetual 133s attributes: half, newton on 133s pair build: half/bin/atomonly/newton 133s stencil: half/bin/3d 133s bin: standard 133s Setting up Verlet run ... 133s Unit style : lj 133s Current step : 0 133s Time step : 0.001 133s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 133s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 133s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 133s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 133s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 133s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 134s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 134s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 134s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 134s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 134s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 134s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 134s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 134s Loop time of 1.52575 on 2 procs for 10000 steps with 1000 atoms 134s 134s Performance: 566279.535 tau/day, 6554.161 timesteps/s, 6.554 Matom-step/s 134s 90.5% CPU use with 2 MPI tasks x 1 OpenMP threads 134s 134s MPI task timing breakdown: 134s Section | min time | avg time | max time |%varavg| %total 134s --------------------------------------------------------------- 134s Pair | 0.84752 | 0.87201 | 0.8965 | 2.6 | 57.15 134s Neigh | 0.066913 | 0.069132 | 0.071351 | 0.8 | 4.53 134s Comm | 0.27938 | 0.30657 | 0.33377 | 4.9 | 20.09 134s Output | 0.00037623 | 0.00053602 | 0.0006958 | 0.0 | 0.04 134s Modify | 0.23331 | 0.23462 | 0.23593 | 0.3 | 15.38 134s Other | | 0.04288 | | | 2.81 134s 134s Nlocal: 500 ave 510 max 490 min 134s Histogram: 1 0 0 0 0 0 0 0 0 1 134s Nghost: 1351.5 ave 1357 max 1346 min 134s Histogram: 1 0 0 0 0 0 0 0 0 1 134s Neighs: 10160.5 ave 10780 max 9541 min 134s Histogram: 1 0 0 0 0 0 0 0 0 1 134s 134s Total # of neighbors = 20321 134s Ave neighs/atom = 20.321 134s Neighbor list builds = 194 134s Dangerous builds = 0 134s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 134s using 1 OpenMP thread(s) per MPI task 134s Reading restart file ... 134s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 134s restoring atom style atomic from restart 134s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 134s 1 by 1 by 2 MPI processor grid 134s restoring pair style lj/cubic from restart 134s 1000 atoms 134s read_restart CPU = 0.001 seconds 134s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 134s Neighbor list info ... 134s update: every = 1 steps, delay = 0 steps, check = yes 134s max neighbors/atom: 2000, page size: 100000 134s master list distance cutoff = 1.7475372 134s ghost atom cutoff = 1.7475372 134s binsize = 0.87376862, bins = 8 12 12 134s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 134s (1) pair lj/cubic, perpetual 134s attributes: half, newton on 134s pair build: half/bin/atomonly/newton 134s stencil: half/bin/3d 134s bin: standard 134s Setting up Verlet run ... 134s Unit style : lj 134s Current step : 0 134s Time step : 0.001 134s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 134s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 134s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 135s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 135s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 135s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 135s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 135s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 135s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 135s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 136s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 136s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 136s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 136s Loop time of 1.29952 on 2 procs for 10000 steps with 1000 atoms 136s 136s Performance: 664859.889 tau/day, 7695.138 timesteps/s, 7.695 Matom-step/s 136s 90.3% CPU use with 2 MPI tasks x 1 OpenMP threads 136s 136s MPI task timing breakdown: 136s Section | min time | avg time | max time |%varavg| %total 136s --------------------------------------------------------------- 136s Pair | 0.75995 | 0.76288 | 0.7658 | 0.3 | 58.70 136s Neigh | 0.0036191 | 0.0036329 | 0.0036467 | 0.0 | 0.28 136s Comm | 0.25966 | 0.26295 | 0.26625 | 0.6 | 20.23 136s Output | 0.0003567 | 0.00077077 | 0.0011849 | 0.0 | 0.06 136s Modify | 0.23172 | 0.23228 | 0.23283 | 0.1 | 17.87 136s Other | | 0.03701 | | | 2.85 136s 136s Nlocal: 500 ave 503 max 497 min 136s Histogram: 1 0 0 0 0 0 0 0 0 1 136s Nghost: 1214 ave 1217 max 1211 min 136s Histogram: 1 0 0 0 0 0 0 0 0 1 136s Neighs: 10500 ave 10560 max 10440 min 136s Histogram: 1 0 0 0 0 0 0 0 0 1 136s 136s Total # of neighbors = 21000 136s Ave neighs/atom = 21 136s Neighbor list builds = 10 136s Dangerous builds = 0 136s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 136s using 1 OpenMP thread(s) per MPI task 136s Reading restart file ... 136s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 136s restoring atom style atomic from restart 136s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 136s 1 by 1 by 2 MPI processor grid 136s restoring pair style lj/cubic from restart 136s 1000 atoms 136s read_restart CPU = 0.001 seconds 136s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 136s Neighbor list info ... 136s update: every = 1 steps, delay = 0 steps, check = yes 136s max neighbors/atom: 2000, page size: 100000 136s master list distance cutoff = 1.7475372 136s ghost atom cutoff = 1.7475372 136s binsize = 0.87376862, bins = 8 12 12 136s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 136s (1) pair lj/cubic, perpetual 136s attributes: half, newton on 136s pair build: half/bin/atomonly/newton 136s stencil: half/bin/3d 136s bin: standard 136s Setting up Verlet run ... 136s Unit style : lj 136s Current step : 0 136s Time step : 0.001 136s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 136s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 136s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 136s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 136s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 136s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 136s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 136s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 137s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 137s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 137s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 137s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 137s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 137s Loop time of 1.35027 on 2 procs for 10000 steps with 1000 atoms 137s 137s Performance: 639870.376 tau/day, 7405.907 timesteps/s, 7.406 Matom-step/s 137s 88.6% CPU use with 2 MPI tasks x 1 OpenMP threads 137s 137s MPI task timing breakdown: 137s Section | min time | avg time | max time |%varavg| %total 137s --------------------------------------------------------------- 137s Pair | 0.7792 | 0.78023 | 0.78126 | 0.1 | 57.78 137s Neigh | 0.033051 | 0.033073 | 0.033094 | 0.0 | 2.45 137s Comm | 0.26269 | 0.26412 | 0.26555 | 0.3 | 19.56 137s Output | 0.00036954 | 0.0008958 | 0.0014221 | 0.0 | 0.07 137s Modify | 0.23433 | 0.23466 | 0.235 | 0.1 | 17.38 137s Other | | 0.03729 | | | 2.76 137s 137s Nlocal: 500 ave 503 max 497 min 137s Histogram: 1 0 0 0 0 0 0 0 0 1 137s Nghost: 1217.5 ave 1219 max 1216 min 137s Histogram: 1 0 0 0 0 0 0 0 0 1 137s Neighs: 10291 ave 10353 max 10229 min 137s Histogram: 1 0 0 0 0 0 0 0 0 1 137s 137s Total # of neighbors = 20582 137s Ave neighs/atom = 20.582 137s Neighbor list builds = 89 137s Dangerous builds = 0 137s Total wall time: 0:00:04 137s LAMMPS (7 Feb 2024 - Update 1) 137s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 137s using 1 OpenMP thread(s) per MPI task 137s Lattice spacing in x,y,z = 1.4142135 2 2 137s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 137s 1 by 1 by 1 MPI processor grid 137s Created 1000 atoms 137s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 137s create_atoms CPU = 0.000 seconds 137s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 137s Neighbor list info ... 137s update: every = 1 steps, delay = 0 steps, check = yes 137s max neighbors/atom: 2000, page size: 100000 137s master list distance cutoff = 1.8475372 137s ghost atom cutoff = 1.8475372 137s binsize = 0.92376862, bins = 8 11 11 137s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 137s (1) pair lj/cubic, perpetual 137s attributes: half, newton on 137s pair build: half/bin/atomonly/newton 137s stencil: half/bin/3d 137s bin: standard 137s Setting up cg style minimization ... 137s Unit style : lj 137s Current step : 0 137s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 137s (src/min.cpp:219) 137s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 137s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 137s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 137s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 137s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 137s Loop time of 0.0271822 on 1 procs for 134 steps with 1000 atoms 137s 137s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 137s 137s Minimization stats: 137s Stopping criterion = force tolerance 137s Energy initial, next-to-last, final = 137s -6.29375358358557 -6.33442531515503 -6.33442531515503 137s Force two-norm initial, final = 3395.2895 5.5740327e-10 137s Force max component initial, final = 1960.2713 3.2730334e-10 137s Final line search alpha, max atom move = 1 3.2730334e-10 137s Iterations, force evaluations = 134 137 137s 137s MPI task timing breakdown: 137s Section | min time | avg time | max time |%varavg| %total 137s --------------------------------------------------------------- 137s Pair | 0.021331 | 0.021331 | 0.021331 | 0.0 | 78.47 137s Neigh | 0.0005386 | 0.0005386 | 0.0005386 | 0.0 | 1.98 137s Comm | 0.00067673 | 0.00067673 | 0.00067673 | 0.0 | 2.49 137s Output | 1.321e-05 | 1.321e-05 | 1.321e-05 | 0.0 | 0.05 137s Modify | 0 | 0 | 0 | 0.0 | 0.00 137s Other | | 0.004623 | | | 17.01 137s 137s Nlocal: 1000 ave 1000 max 1000 min 137s Histogram: 1 0 0 0 0 0 0 0 0 0 137s Nghost: 1724 ave 1724 max 1724 min 137s Histogram: 1 0 0 0 0 0 0 0 0 0 137s Neighs: 21000 ave 21000 max 21000 min 137s Histogram: 1 0 0 0 0 0 0 0 0 0 137s 137s Total # of neighbors = 21000 137s Ave neighs/atom = 21 137s Neighbor list builds = 1 137s Dangerous builds = 0 137s System init for write_restart ... 137s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 137s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 137s using 1 OpenMP thread(s) per MPI task 137s Reading restart file ... 137s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 137s restoring atom style atomic from restart 137s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 137s 1 by 1 by 1 MPI processor grid 137s restoring pair style lj/cubic from restart 137s 1000 atoms 137s read_restart CPU = 0.000 seconds 137s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 137s Neighbor list info ... 137s update: every = 1 steps, delay = 0 steps, check = yes 137s max neighbors/atom: 2000, page size: 100000 137s master list distance cutoff = 1.7475372 137s ghost atom cutoff = 1.7475372 137s binsize = 0.87376862, bins = 8 12 12 137s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 140s (1) pair lj/cubic, perpetual 140s attributes: half, newton on 140s pair build: half/bin/atomonly/newton 140s stencil: half/bin/3d 140s bin: standard 140s Setting up Verlet run ... 140s Unit style : lj 140s Current step : 0 140s Time step : 0.001 140s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 140s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 140s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 140s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 140s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 140s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 140s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 140s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 140s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 140s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 140s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 140s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 140s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 140s Loop time of 2.31717 on 1 procs for 10000 steps with 1000 atoms 140s 140s Performance: 372868.060 tau/day, 4315.603 timesteps/s, 4.316 Matom-step/s 140s 99.3% CPU use with 1 MPI tasks x 1 OpenMP threads 140s 140s MPI task timing breakdown: 140s Section | min time | avg time | max time |%varavg| %total 140s --------------------------------------------------------------- 140s Pair | 1.7621 | 1.7621 | 1.7621 | 0.0 | 76.05 140s Neigh | 0.13422 | 0.13422 | 0.13422 | 0.0 | 5.79 140s Comm | 0.054311 | 0.054311 | 0.054311 | 0.0 | 2.34 140s Output | 0.00035978 | 0.00035978 | 0.00035978 | 0.0 | 0.02 140s Modify | 0.3452 | 0.3452 | 0.3452 | 0.0 | 14.90 140s Other | | 0.02098 | | | 0.91 140s 140s Nlocal: 1000 ave 1000 max 1000 min 140s Histogram: 1 0 0 0 0 0 0 0 0 0 140s Nghost: 1886 ave 1886 max 1886 min 140s Histogram: 1 0 0 0 0 0 0 0 0 0 140s Neighs: 20874 ave 20874 max 20874 min 140s Histogram: 1 0 0 0 0 0 0 0 0 0 140s 140s Total # of neighbors = 20874 140s Ave neighs/atom = 20.874 140s Neighbor list builds = 188 140s Dangerous builds = 0 140s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 140s using 1 OpenMP thread(s) per MPI task 140s Reading restart file ... 140s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 140s restoring atom style atomic from restart 140s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 140s 1 by 1 by 1 MPI processor grid 140s restoring pair style lj/cubic from restart 140s 1000 atoms 140s read_restart CPU = 0.000 seconds 140s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 140s Neighbor list info ... 142s update: every = 1 steps, delay = 0 steps, check = yes 142s max neighbors/atom: 2000, page size: 100000 142s master list distance cutoff = 1.7475372 142s ghost atom cutoff = 1.7475372 142s binsize = 0.87376862, bins = 8 12 12 142s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 142s (1) pair lj/cubic, perpetual 142s attributes: half, newton on 142s pair build: half/bin/atomonly/newton 142s stencil: half/bin/3d 142s bin: standard 142s Setting up Verlet run ... 142s Unit style : lj 142s Current step : 0 142s Time step : 0.001 142s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 142s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 142s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 142s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 142s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 142s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 142s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 142s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 142s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 142s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 142s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 142s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 142s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 142s Loop time of 1.91319 on 1 procs for 10000 steps with 1000 atoms 142s 142s Performance: 451602.917 tau/day, 5226.886 timesteps/s, 5.227 Matom-step/s 142s 99.1% CPU use with 1 MPI tasks x 1 OpenMP threads 142s 142s MPI task timing breakdown: 142s Section | min time | avg time | max time |%varavg| %total 142s --------------------------------------------------------------- 142s Pair | 1.4966 | 1.4966 | 1.4966 | 0.0 | 78.23 142s Neigh | 0.0078661 | 0.0078661 | 0.0078661 | 0.0 | 0.41 142s Comm | 0.047515 | 0.047515 | 0.047515 | 0.0 | 2.48 142s Output | 0.00036037 | 0.00036037 | 0.00036037 | 0.0 | 0.02 142s Modify | 0.34137 | 0.34137 | 0.34137 | 0.0 | 17.84 142s Other | | 0.01948 | | | 1.02 142s 142s Nlocal: 1000 ave 1000 max 1000 min 142s Histogram: 1 0 0 0 0 0 0 0 0 0 142s Nghost: 1724 ave 1724 max 1724 min 142s Histogram: 1 0 0 0 0 0 0 0 0 0 142s Neighs: 21000 ave 21000 max 21000 min 142s Histogram: 1 0 0 0 0 0 0 0 0 0 142s 142s Total # of neighbors = 21000 142s Ave neighs/atom = 21 142s Neighbor list builds = 11 142s Dangerous builds = 0 142s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 142s using 1 OpenMP thread(s) per MPI task 142s Reading restart file ... 142s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 142s restoring atom style atomic from restart 144s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 144s 1 by 1 by 1 MPI processor grid 144s restoring pair style lj/cubic from restart 144s 1000 atoms 144s read_restart CPU = 0.001 seconds 144s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 144s Neighbor list info ... 144s update: every = 1 steps, delay = 0 steps, check = yes 144s max neighbors/atom: 2000, page size: 100000 144s master list distance cutoff = 1.7475372 144s ghost atom cutoff = 1.7475372 144s binsize = 0.87376862, bins = 8 12 12 144s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 144s (1) pair lj/cubic, perpetual 144s attributes: half, newton on 144s pair build: half/bin/atomonly/newton 144s stencil: half/bin/3d 144s bin: standard 144s Setting up Verlet run ... 144s Unit style : lj 144s Current step : 0 144s Time step : 0.001 144s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 144s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 144s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 144s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 144s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 144s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 144s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 144s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 144s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 144s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 144s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 144s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 144s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 144s Loop time of 2.02951 on 1 procs for 10000 steps with 1000 atoms 144s 144s Performance: 425717.822 tau/day, 4927.290 timesteps/s, 4.927 Matom-step/s 144s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads 144s 144s MPI task timing breakdown: 144s Section | min time | avg time | max time |%varavg| %total 144s --------------------------------------------------------------- 144s Pair | 1.5459 | 1.5459 | 1.5459 | 0.0 | 76.17 144s Neigh | 0.069416 | 0.069416 | 0.069416 | 0.0 | 3.42 144s Comm | 0.051038 | 0.051038 | 0.051038 | 0.0 | 2.51 144s Output | 0.00036943 | 0.00036943 | 0.00036943 | 0.0 | 0.02 144s Modify | 0.34253 | 0.34253 | 0.34253 | 0.0 | 16.88 144s Other | | 0.02026 | | | 1.00 144s 144s Nlocal: 1000 ave 1000 max 1000 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s Nghost: 1724 ave 1724 max 1724 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s Neighs: 20654 ave 20654 max 20654 min 144s Histogram: 1 0 0 0 0 0 0 0 0 0 144s 144s Total # of neighbors = 20654 144s Ave neighs/atom = 20.654 144s Neighbor list builds = 94 144s Dangerous builds = 0 144s Total wall time: 0:00:06 144s run: OK 144s autopkgtest [17:35:15]: test hugo: -----------------------] 144s hugo PASS 144s autopkgtest [17:35:15]: test hugo: - - - - - - - - - - results - - - - - - - - - - 145s autopkgtest [17:35:16]: test command1: preparing testbed 420s autopkgtest [17:39:51]: testbed dpkg architecture: amd64 420s autopkgtest [17:39:51]: testbed apt version: 3.0.0 420s autopkgtest [17:39:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 420s autopkgtest [17:39:51]: testbed release detected to be: questing 421s autopkgtest [17:39:52]: updating testbed package index (apt update) 421s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 421s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 421s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 421s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 421s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1457 kB] 421s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 421s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 421s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [197 kB] 421s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [141 kB] 421s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1416 kB] 421s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [570 kB] 422s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 422s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.3 kB] 422s Fetched 4144 kB in 1s (5367 kB/s) 422s Reading package lists... 423s autopkgtest [17:39:54]: upgrading testbed (apt dist-upgrade and autopurge) 423s Reading package lists... 423s Building dependency tree... 423s Reading state information... 423s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 423s Starting 2 pkgProblemResolver with broken count: 0 423s Done 424s Entering ResolveByKeep 424s 424s Calculating upgrade... 424s The following packages will be upgraded: 424s libperl5.40 libpython3.13 libpython3.13-minimal libpython3.13-stdlib perl 424s perl-base perl-modules-5.40 python3.13 python3.13-gdbm python3.13-minimal 425s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 425s Need to get 18.6 MB of archives. 425s After this operation, 8192 B of additional disk space will be used. 425s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 425s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl amd64 5.40.1-3 [262 kB] 425s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 425s Get:4 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 425s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3.13 amd64 3.13.3-2 [739 kB] 425s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libpython3.13 amd64 3.13.3-2 [2342 kB] 425s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libpython3.13-stdlib amd64 3.13.3-2 [2071 kB] 425s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3.13-minimal amd64 3.13.3-2 [2372 kB] 425s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 libpython3.13-minimal amd64 3.13.3-2 [884 kB] 425s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3.13-gdbm amd64 3.13.3-2 [32.1 kB] 426s Fetched 18.6 MB in 1s (16.4 MB/s) 426s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 426s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 426s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 426s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 426s Unpacking perl (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 426s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 426s Unpacking perl-base (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 426s Setting up perl-base (5.40.1-3) ... 426s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 426s Preparing to unpack .../0-perl-modules-5.40_5.40.1-3_all.deb ... 426s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2ubuntu0.1) ... 426s Preparing to unpack .../1-python3.13_3.13.3-2_amd64.deb ... 426s Unpacking python3.13 (3.13.3-2) over (3.13.3-1) ... 426s Preparing to unpack .../2-libpython3.13_3.13.3-2_amd64.deb ... 426s Unpacking libpython3.13:amd64 (3.13.3-2) over (3.13.3-1) ... 426s Preparing to unpack .../3-libpython3.13-stdlib_3.13.3-2_amd64.deb ... 427s Unpacking libpython3.13-stdlib:amd64 (3.13.3-2) over (3.13.3-1) ... 427s Preparing to unpack .../4-python3.13-minimal_3.13.3-2_amd64.deb ... 427s Unpacking python3.13-minimal (3.13.3-2) over (3.13.3-1) ... 427s Preparing to unpack .../5-libpython3.13-minimal_3.13.3-2_amd64.deb ... 427s Unpacking libpython3.13-minimal:amd64 (3.13.3-2) over (3.13.3-1) ... 427s Preparing to unpack .../6-python3.13-gdbm_3.13.3-2_amd64.deb ... 427s Unpacking python3.13-gdbm (3.13.3-2) over (3.13.3-1) ... 427s Setting up libpython3.13-minimal:amd64 (3.13.3-2) ... 427s Setting up perl-modules-5.40 (5.40.1-3) ... 427s Setting up python3.13-minimal (3.13.3-2) ... 427s Setting up libpython3.13-stdlib:amd64 (3.13.3-2) ... 427s Setting up python3.13-gdbm (3.13.3-2) ... 427s Setting up libpython3.13:amd64 (3.13.3-2) ... 427s Setting up python3.13 (3.13.3-2) ... 428s Setting up libperl5.40:amd64 (5.40.1-3) ... 428s Setting up perl (5.40.1-3) ... 428s Processing triggers for systemd (257.4-1ubuntu3) ... 428s Processing triggers for man-db (2.13.0-1) ... 429s Processing triggers for libc-bin (2.41-6ubuntu1) ... 429s Reading package lists... 429s Building dependency tree... 429s Reading state information... 429s Starting pkgProblemResolver with broken count: 0 429s Starting 2 pkgProblemResolver with broken count: 0 429s Done 430s Solving dependencies... 430s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 432s Reading package lists... 432s Building dependency tree... 432s Reading state information... 432s Starting pkgProblemResolver with broken count: 0 432s Starting 2 pkgProblemResolver with broken count: 0 432s Done 433s The following NEW packages will be installed: 433s autoconf automake autotools-dev cpp-14 cpp-14-x86-64-linux-gnu 433s fontconfig-config fonts-dejavu-core fonts-dejavu-mono gcc-14 433s gcc-14-x86-64-linux-gnu gfortran-14 gfortran-14-x86-64-linux-gnu libaec0 433s libamd-comgr2 libamdhip64-5 libasan8 libblas3 libcairo2 libcc1-0 libdeflate0 433s libdouble-conversion3 libdrm-intel1 libevent-2.1-7t64 libevent-dev 433s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 433s libfabric1 libfftw3-double3 libfontconfig1 libgbm1 libgcc-14-dev 433s libgfortran-14-dev libgfortran5 libgl1 libgl1-mesa-dri libgl2ps1.4 433s libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 libhdf5-310 433s libhdf5-hl-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 libhwloc-dev 433s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libibverbs-dev libisl23 433s libitm1 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 433s libjsoncpp26 libkim-api2 liblammps-dev liblammps0t64 liblapack3 liblerc4 433s libllvm17t64 liblsan0 libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf22 433s libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev 433s libopenmpi40 libpciaccess0 libpixman-1-0 libpmix-dev libpmix2t64 libpnetcdf6 433s libproj25 libpsm-infinipath1 libpsm2-2 libquadmath0 librdmacm1t64 433s libsharpyuv0 libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 433s libtheoradec1 libtheoraenc1 libtiff6 libtk8.6 libtsan2 libubsan1 libucx0 433s libvoro++1 libvtk9.3 libvulkan1 libwayland-server0 libwebp7 libx11-xcb1 433s libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 433s libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxft2 libxnvctrl0 libxrender1 433s libxshmfence1 libxss1 libxxf86vm1 m4 mesa-libgallium mpi-default-bin 433s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 433s python3-lammps x11-common zlib1g-dev 433s 0 upgraded, 134 newly installed, 0 to remove and 0 not upgraded. 433s Need to get 202 MB of archives. 433s After this operation, 793 MB of additional disk space will be used. 433s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 m4 amd64 1.4.19-7 [263 kB] 433s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 autoconf all 2.72-3ubuntu1 [383 kB] 433s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 autotools-dev all 20220109.1 [44.9 kB] 433s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 automake all 1:1.17-3ubuntu1 [572 kB] 433s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libisl23 amd64 0.27-1 [685 kB] 433s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libmpc3 amd64 1.3.1-1build2 [55.3 kB] 433s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [11.9 MB] 434s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 cpp-14 amd64 14.2.0-19ubuntu2 [1030 B] 434s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 434s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 435s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 435s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libcc1-0 amd64 15-20250404-0ubuntu1 [47.1 kB] 435s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 435s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 435s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 435s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 435s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 435s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 435s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 435s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 435s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 435s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [23.3 MB] 436s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 gcc-14 amd64 14.2.0-19ubuntu2 [540 kB] 436s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 436s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran-14-dev amd64 14.2.0-19ubuntu2 [967 kB] 436s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14-x86-64-linux-gnu amd64 14.2.0-19ubuntu2 [12.5 MB] 436s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 gfortran-14 amd64 14.2.0-19ubuntu2 [14.2 kB] 436s Get:28 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 436s Get:29 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 436s Get:30 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 436s Get:31 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 436s Get:32 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 436s Get:33 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 437s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 437s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 437s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 437s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 437s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 437s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 437s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 437s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 437s Get:42 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 437s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 437s Get:44 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 437s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10 [144 kB] 437s Get:46 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-10 [64.2 kB] 437s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 437s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-10 [15.7 kB] 437s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-dev amd64 2.1.12-stable-10 [274 kB] 437s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 437s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 437s Get:52 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 437s Get:53 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 437s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 libfftw3-double3 amd64 3.3.10-2fakesync1build1 [839 kB] 437s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 437s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.10-2 [7944 B] 437s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 437s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 437s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 437s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 437s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 437s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 437s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 437s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 437s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.304.0-1 [147 kB] 437s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 437s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 437s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 437s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 437s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 437s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 437s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 437s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2build1 [41.9 kB] 437s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 437s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 437s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 437s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 437s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 437s Get:79 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 437s Get:80 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 437s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 437s Get:82 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 437s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 libjsoncpp26 amd64 1.9.6-3 [90.0 kB] 437s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 libkim-api2 amd64 2.3.0-1ubuntu1 [588 kB] 437s Get:85 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 437s Get:86 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 437s Get:87 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 437s Get:88 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 437s Get:89 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1build1 [38.5 kB] 437s Get:90 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-1 [16.0 kB] 437s Get:91 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.6-5 [714 kB] 437s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 437s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 437s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 437s Get:95 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 437s Get:96 http://ftpmaster.internal/ubuntu questing/universe amd64 libpnetcdf6 amd64 1.14.0-2 [1059 kB] 437s Get:97 http://ftpmaster.internal/ubuntu questing/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 437s Get:98 http://ftpmaster.internal/ubuntu questing/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 437s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 437s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 proj-data all 9.5.1-1 [7924 kB] 437s Get:101 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 437s Get:102 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 437s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 437s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 437s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 437s Get:106 http://ftpmaster.internal/ubuntu questing/universe amd64 libproj25 amd64 9.5.1-1 [1499 kB] 437s Get:107 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 437s Get:108 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 437s Get:109 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 437s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 438s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoradec1 amd64 1.2.0~alpha1+dfsg-6 [70.3 kB] 438s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 libtheoraenc1 amd64 1.2.0~alpha1+dfsg-6 [115 kB] 438s Get:113 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 438s Get:114 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 438s Get:115 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 438s Get:116 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 438s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libvtk9.3 amd64 9.3.0+dfsg1-4ubuntu1 [25.3 MB] 438s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 liblammps0t64 amd64 20240207+dfsg-3build3 [8393 kB] 438s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-common all 5.0.7-1 [97.9 kB] 438s Get:120 http://ftpmaster.internal/ubuntu questing/main amd64 libnl-3-dev amd64 3.7.0-2 [113 kB] 438s Get:121 http://ftpmaster.internal/ubuntu questing/main amd64 libnl-route-3-dev amd64 3.7.0-2 [225 kB] 438s Get:122 http://ftpmaster.internal/ubuntu questing/main amd64 libibverbs-dev amd64 56.0-4ubuntu1 [687 kB] 438s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 libnuma-dev amd64 2.0.18-1build1 [37.0 kB] 438s Get:124 http://ftpmaster.internal/ubuntu questing/main amd64 libltdl7 amd64 2.5.4-4 [46.5 kB] 438s Get:125 http://ftpmaster.internal/ubuntu questing/main amd64 libltdl-dev amd64 2.5.4-4 [176 kB] 438s Get:126 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-dev amd64 2.12.0-1 [290 kB] 438s Get:127 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 438s Get:128 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix-dev amd64 5.0.6-5 [4060 kB] 438s Get:129 http://ftpmaster.internal/ubuntu questing/universe amd64 openmpi-bin amd64 5.0.7-1 [192 kB] 438s Get:130 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi-dev amd64 5.0.7-1 [1085 kB] 438s Get:131 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-dev amd64 1.18 [3320 B] 438s Get:132 http://ftpmaster.internal/ubuntu questing/universe amd64 liblammps-dev amd64 20240207+dfsg-3build3 [112 kB] 438s Get:133 http://ftpmaster.internal/ubuntu questing/universe amd64 mpi-default-bin amd64 1.18 [2510 B] 438s Get:134 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lammps amd64 20240207+dfsg-3build3 [70.5 kB] 439s Fetched 202 MB in 6s (35.1 MB/s) 439s Selecting previously unselected package m4. 439s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 439s Preparing to unpack .../000-m4_1.4.19-7_amd64.deb ... 439s Unpacking m4 (1.4.19-7) ... 439s Selecting previously unselected package autoconf. 439s Preparing to unpack .../001-autoconf_2.72-3ubuntu1_all.deb ... 439s Unpacking autoconf (2.72-3ubuntu1) ... 439s Selecting previously unselected package autotools-dev. 439s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 439s Unpacking autotools-dev (20220109.1) ... 439s Selecting previously unselected package automake. 439s Preparing to unpack .../003-automake_1%3a1.17-3ubuntu1_all.deb ... 439s Unpacking automake (1:1.17-3ubuntu1) ... 439s Selecting previously unselected package libisl23:amd64. 439s Preparing to unpack .../004-libisl23_0.27-1_amd64.deb ... 439s Unpacking libisl23:amd64 (0.27-1) ... 439s Selecting previously unselected package libmpc3:amd64. 439s Preparing to unpack .../005-libmpc3_1.3.1-1build2_amd64.deb ... 439s Unpacking libmpc3:amd64 (1.3.1-1build2) ... 439s Selecting previously unselected package cpp-14-x86-64-linux-gnu. 439s Preparing to unpack .../006-cpp-14-x86-64-linux-gnu_14.2.0-19ubuntu2_amd64.deb ... 439s Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 439s Selecting previously unselected package cpp-14. 439s Preparing to unpack .../007-cpp-14_14.2.0-19ubuntu2_amd64.deb ... 439s Unpacking cpp-14 (14.2.0-19ubuntu2) ... 439s Selecting previously unselected package fonts-dejavu-mono. 439s Preparing to unpack .../008-fonts-dejavu-mono_2.37-8_all.deb ... 439s Unpacking fonts-dejavu-mono (2.37-8) ... 439s Selecting previously unselected package fonts-dejavu-core. 439s Preparing to unpack .../009-fonts-dejavu-core_2.37-8_all.deb ... 439s Unpacking fonts-dejavu-core (2.37-8) ... 439s Selecting previously unselected package fontconfig-config. 439s Preparing to unpack .../010-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 439s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 439s Selecting previously unselected package libcc1-0:amd64. 439s Preparing to unpack .../011-libcc1-0_15-20250404-0ubuntu1_amd64.deb ... 439s Unpacking libcc1-0:amd64 (15-20250404-0ubuntu1) ... 439s Selecting previously unselected package libgomp1:amd64. 439s Preparing to unpack .../012-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 439s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 439s Selecting previously unselected package libitm1:amd64. 439s Preparing to unpack .../013-libitm1_15-20250404-0ubuntu1_amd64.deb ... 439s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ... 439s Selecting previously unselected package libasan8:amd64. 439s Preparing to unpack .../014-libasan8_15-20250404-0ubuntu1_amd64.deb ... 439s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ... 439s Selecting previously unselected package liblsan0:amd64. 439s Preparing to unpack .../015-liblsan0_15-20250404-0ubuntu1_amd64.deb ... 439s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ... 439s Selecting previously unselected package libtsan2:amd64. 439s Preparing to unpack .../016-libtsan2_15-20250404-0ubuntu1_amd64.deb ... 439s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ... 440s Selecting previously unselected package libubsan1:amd64. 440s Preparing to unpack .../017-libubsan1_15-20250404-0ubuntu1_amd64.deb ... 440s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ... 440s Selecting previously unselected package libhwasan0:amd64. 440s Preparing to unpack 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Selecting previously unselected package libevent-2.1-7t64:amd64. 441s Preparing to unpack .../044-libevent-2.1-7t64_2.1.12-stable-10_amd64.deb ... 441s Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10) ... 441s Selecting previously unselected package libevent-extra-2.1-7t64:amd64. 441s Preparing to unpack .../045-libevent-extra-2.1-7t64_2.1.12-stable-10_amd64.deb ... 441s Unpacking libevent-extra-2.1-7t64:amd64 (2.1.12-stable-10) ... 441s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 441s Preparing to unpack .../046-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 441s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 441s Selecting previously unselected package libevent-openssl-2.1-7t64:amd64. 441s Preparing to unpack .../047-libevent-openssl-2.1-7t64_2.1.12-stable-10_amd64.deb ... 441s Unpacking libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-10) ... 441s Selecting previously unselected package libevent-dev. 441s Preparing to unpack .../048-libevent-dev_2.1.12-stable-10_amd64.deb ... 441s Unpacking libevent-dev (2.1.12-stable-10) ... 441s Selecting previously unselected package libpsm-infinipath1. 441s Preparing to unpack .../049-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ... 441s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 441s Selecting previously unselected package libpsm2-2. 441s Preparing to unpack .../050-libpsm2-2_11.2.185-2.1_amd64.deb ... 441s Unpacking libpsm2-2 (11.2.185-2.1) ... 441s Selecting previously unselected package librdmacm1t64:amd64. 441s Preparing to unpack .../051-librdmacm1t64_56.0-4ubuntu1_amd64.deb ... 441s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ... 442s Selecting previously unselected package libfabric1:amd64. 442s Preparing to unpack .../052-libfabric1_1.17.0-3.1_amd64.deb ... 442s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 442s Selecting previously unselected package libfftw3-double3:amd64. 442s Preparing to unpack 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Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ... 442s Selecting previously unselected package libvulkan1:amd64. 442s Preparing to unpack .../064-libvulkan1_1.4.304.0-1_amd64.deb ... 442s Unpacking libvulkan1:amd64 (1.4.304.0-1) ... 442s Selecting previously unselected package libgl1-mesa-dri:amd64. 442s Preparing to unpack .../065-libgl1-mesa-dri_25.0.3-1ubuntu2_amd64.deb ... 442s Unpacking libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 442s Selecting previously unselected package libglvnd0:amd64. 442s Preparing to unpack .../066-libglvnd0_1.7.0-1build1_amd64.deb ... 442s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 442s Selecting previously unselected package libxcb-glx0:amd64. 442s Preparing to unpack .../067-libxcb-glx0_1.17.0-2_amd64.deb ... 442s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 442s Selecting previously unselected package libxxf86vm1:amd64. 442s Preparing to unpack .../068-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 442s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 442s Selecting previously unselected package libglx-mesa0:amd64. 442s Preparing to unpack .../069-libglx-mesa0_25.0.3-1ubuntu2_amd64.deb ... 442s Unpacking libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 442s Selecting previously unselected package libglx0:amd64. 442s Preparing to unpack .../070-libglx0_1.7.0-1build1_amd64.deb ... 442s Unpacking libglx0:amd64 (1.7.0-1build1) ... 442s Selecting previously unselected package libgl1:amd64. 442s Preparing to unpack .../071-libgl1_1.7.0-1build1_amd64.deb ... 442s Unpacking libgl1:amd64 (1.7.0-1build1) ... 442s Selecting previously unselected package libgl2ps1.4. 442s Preparing to unpack .../072-libgl2ps1.4_1.4.2+dfsg1-2build1_amd64.deb ... 442s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 442s Selecting previously unselected package libglew2.2:amd64. 442s Preparing to unpack .../073-libglew2.2_2.2.0-4build1_amd64.deb ... 442s Unpacking libglew2.2:amd64 (2.2.0-4build1) ... 442s Selecting previously unselected package libsz2:amd64. 442s Preparing to unpack .../074-libsz2_1.1.3-1_amd64.deb ... 442s Unpacking libsz2:amd64 (1.1.3-1) ... 442s Selecting previously unselected package libhdf5-310:amd64. 442s Preparing to unpack .../075-libhdf5-310_1.14.5+repack-3_amd64.deb ... 442s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 442s Selecting previously unselected package libhdf5-hl-310:amd64. 442s Preparing to unpack .../076-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 442s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 442s Selecting previously unselected package libhwloc15:amd64. 442s Preparing to unpack .../077-libhwloc15_2.12.0-1_amd64.deb ... 442s Unpacking libhwloc15:amd64 (2.12.0-1) ... 442s Selecting previously unselected package libjpeg-turbo8:amd64. 442s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 442s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 442s Selecting previously unselected package libjpeg8:amd64. 442s Preparing to unpack .../079-libjpeg8_8c-2ubuntu11_amd64.deb ... 442s 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unselected package libnetcdf22:amd64. 442s Preparing to unpack .../085-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 442s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 443s Selecting previously unselected package libmunge2:amd64. 443s Preparing to unpack .../086-libmunge2_0.5.16-1_amd64.deb ... 443s Unpacking libmunge2:amd64 (0.5.16-1) ... 443s Selecting previously unselected package libxnvctrl0:amd64. 443s Preparing to unpack .../087-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 443s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 443s Selecting previously unselected package ocl-icd-libopencl1:amd64. 443s Preparing to unpack .../088-ocl-icd-libopencl1_2.3.2-1build1_amd64.deb ... 443s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1build1) ... 443s Selecting previously unselected package libhwloc-plugins:amd64. 443s Preparing to unpack .../089-libhwloc-plugins_2.12.0-1_amd64.deb ... 443s Unpacking libhwloc-plugins:amd64 (2.12.0-1) ... 443s Selecting previously unselected package libpmix2t64:amd64. 443s Preparing to unpack .../090-libpmix2t64_5.0.6-5_amd64.deb ... 443s Unpacking libpmix2t64:amd64 (5.0.6-5) ... 443s Selecting previously unselected package libibumad3:amd64. 443s Preparing to unpack .../091-libibumad3_56.0-4ubuntu1_amd64.deb ... 443s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ... 443s Selecting previously unselected package libibmad5:amd64. 443s Preparing to unpack .../092-libibmad5_56.0-4ubuntu1_amd64.deb ... 443s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ... 443s Selecting previously unselected package libucx0:amd64. 443s Preparing to unpack .../093-libucx0_1.18.1+ds-2_amd64.deb ... 443s Unpacking libucx0:amd64 (1.18.1+ds-2) ... 443s Selecting previously unselected package libopenmpi40:amd64. 443s Preparing to unpack .../094-libopenmpi40_5.0.7-1_amd64.deb ... 443s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 443s Selecting previously unselected package libpnetcdf6:amd64. 443s Preparing to unpack .../095-libpnetcdf6_1.14.0-2_amd64.deb ... 443s Unpacking libpnetcdf6:amd64 (1.14.0-2) ... 443s Selecting previously unselected package libvoro++1. 443s Preparing to unpack .../096-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 443s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 443s Selecting previously unselected package libogg0:amd64. 443s Preparing to unpack .../097-libogg0_1.3.5-3build1_amd64.deb ... 443s Unpacking libogg0:amd64 (1.3.5-3build1) ... 443s Selecting previously unselected package libopengl0:amd64. 443s Preparing to unpack .../098-libopengl0_1.7.0-1build1_amd64.deb ... 443s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 443s Selecting previously unselected package proj-data. 443s Preparing to unpack .../099-proj-data_9.5.1-1_all.deb ... 443s Unpacking proj-data (9.5.1-1) ... 443s Selecting previously unselected package libjbig0:amd64. 443s Preparing to unpack .../100-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 443s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 443s Selecting previously unselected package liblerc4:amd64. 443s Preparing to unpack .../101-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 443s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 443s Selecting previously unselected package libsharpyuv0:amd64. 443s Preparing to unpack .../102-libsharpyuv0_1.5.0-0.1_amd64.deb ... 443s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 443s Selecting previously unselected package libwebp7:amd64. 443s Preparing to unpack .../103-libwebp7_1.5.0-0.1_amd64.deb ... 443s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 443s Selecting previously unselected package libtiff6:amd64. 443s Preparing to unpack .../104-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 443s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 443s Selecting previously unselected package libproj25:amd64. 443s Preparing to unpack .../105-libproj25_9.5.1-1_amd64.deb ... 443s Unpacking libproj25:amd64 (9.5.1-1) ... 443s Selecting previously unselected package libtbbbind-2-5:amd64. 443s Preparing to unpack .../106-libtbbbind-2-5_2022.0.0-2_amd64.deb ... 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(5.7.1-5.1) ... 445s Setting up libtheoradec1:amd64 (1.2.0~alpha1+dfsg-6) ... 445s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 445s Setting up gcc-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 445s Setting up libucx0:amd64 (1.18.1+ds-2) ... 445s Setting up libgl2ps1.4 (1.4.2+dfsg1-2build1) ... 445s Setting up gcc-14 (14.2.0-19ubuntu2) ... 445s Setting up gfortran-14-x86-64-linux-gnu (14.2.0-19ubuntu2) ... 445s Setting up gfortran-14 (14.2.0-19ubuntu2) ... 445s Setting up libopenmpi40:amd64 (5.0.7-1) ... 445s Setting up libpnetcdf6:amd64 (1.14.0-2) ... 445s Setting up libvtk9.3:amd64 (9.3.0+dfsg1-4ubuntu1) ... 445s Setting up openmpi-bin (5.0.7-1) ... 445s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 445s update-alternatives: warning: skip creation of /usr/share/man/man1/mpiexec.1.gz because associated file /usr/share/man/man1/mpiexec.openmpi.1.gz (of link group mpirun) doesn't exist 445s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 445s Setting up mpi-default-bin (1.18) ... 445s Setting up liblammps0t64:amd64 (20240207+dfsg-3build3) ... 445s Setting up libopenmpi-dev:amd64 (5.0.7-1) ... 445s update-alternatives: using /usr/lib/x86_64-linux-gnu/openmpi/include to provide /usr/include/x86_64-linux-gnu/mpi (mpi-x86_64-linux-gnu) in auto mode 445s Setting up mpi-default-dev (1.18) ... 445s Setting up liblammps-dev (20240207+dfsg-3build3) ... 445s Setting up python3-lammps (20240207+dfsg-3build3) ... 445s Processing triggers for man-db (2.13.0-1) ... 446s Processing triggers for install-info (7.1.1-1) ... 446s Processing triggers for libc-bin (2.41-6ubuntu1) ... 498s autopkgtest [17:41:09]: test command1: cd python/examples; python3 demo.py 498s autopkgtest [17:41:09]: test command1: [----------------------- 499s LAMMPS (7 Feb 2024 - Update 1) 499s 499s Python output: 499s Natoms, mass, x[0][0] coord = 4000 1.0 16.767988851705528 499s Temperature from compute = 0.7571533403732014 499s Energy from equal-style variable = -5.758142569688168 499s Velocity component from atom-style variable = -1.0131655567386921 499s Volume from get_thermo = 4738.213693437576 499s Natoms from get_natoms = 4000 499s Global coords from gather_atoms = 16.767988851705528 16.621004261651628 0.14158807746974947 499s Changed x[0][0] via scatter_atoms = 17.767988851705528 499s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 499s using 1 OpenMP thread(s) per MPI task 499s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 499s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 499s 1 by 1 by 1 MPI processor grid 499s Created 4000 atoms 499s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 499s create_atoms CPU = 0.001 seconds 499s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 499s Neighbor list info ... 499s update: every = 20 steps, delay = 0 steps, check = no 499s max neighbors/atom: 2000, page size: 100000 499s master list distance cutoff = 2.8 499s ghost atom cutoff = 2.8 499s binsize = 1.4, bins = 12 12 12 499s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 499s (1) pair lj/cut, perpetual 499s attributes: half, newton on 499s pair build: half/bin/atomonly/newton 499s stencil: half/bin/3d 499s bin: standard 499s Setting up Verlet run ... 499s Unit style : lj 499s Current step : 0 499s Time step : 0.005 499s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 499s Step Temp E_pair E_mol TotEng Press 499s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 499s 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 499s Loop time of 0.200019 on 1 procs for 100 steps with 4000 atoms 499s 499s Performance: 215979.239 tau/day, 499.952 timesteps/s, 2.000 Matom-step/s 499s 96.9% CPU use with 1 MPI tasks x 1 OpenMP threads 499s 499s MPI task timing breakdown: 499s Section | min time | avg time | max time |%varavg| %total 499s --------------------------------------------------------------- 499s Pair | 0.16577 | 0.16577 | 0.16577 | 0.0 | 82.88 499s Neigh | 0.024385 | 0.024385 | 0.024385 | 0.0 | 12.19 499s Comm | 0.0056622 | 0.0056622 | 0.0056622 | 0.0 | 2.83 499s Output | 2.9955e-05 | 2.9955e-05 | 2.9955e-05 | 0.0 | 0.01 499s Modify | 0.0038107 | 0.0038107 | 0.0038107 | 0.0 | 1.91 499s Other | | 0.0003573 | | | 0.18 499s 499s Nlocal: 4000 ave 4000 max 4000 min 499s Histogram: 1 0 0 0 0 0 0 0 0 0 499s Nghost: 5754 ave 5754 max 5754 min 499s Histogram: 1 0 0 0 0 0 0 0 0 0 499s Neighs: 150362 ave 150362 max 150362 min 499s Histogram: 1 0 0 0 0 0 0 0 0 0 499s 499s Total # of neighbors = 150362 499s Ave neighs/atom = 37.5905 499s Neighbor list builds = 5 499s Dangerous builds not checked 499s Total wall time: 0:00:00 499s autopkgtest [17:41:10]: test command1: -----------------------] 500s command1 PASS 500s autopkgtest [17:41:11]: test command1: - - - - - - - - - - results - - - - - - - - - - 500s autopkgtest [17:41:11]: @@@@@@@@@@@@@@@@@@@@ summary 500s crack PASS 500s dipole PASS 500s ellipse PASS 500s flow PASS 500s friction PASS 500s hugo PASS 500s command1 PASS 504s nova [W] Skipping flock for amd64 504s Creating nova instance adt-questing-amd64-lammps-20250503-173251-juju-7f2275-prod-proposed-migration-environment-15-f01044d6-c436-4f89-9e63-dfd7d0075910 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID adbe8b9e-12c7-44a2-a05e-3372f89ed694)... 504s nova [W] Timed out waiting for 9bdae905-2897-4bfb-9688-4c13a853bbbb to get deleted. 504s nova [W] Skipping flock for amd64 504s Creating nova instance adt-questing-amd64-lammps-20250503-173251-juju-7f2275-prod-proposed-migration-environment-15-f01044d6-c436-4f89-9e63-dfd7d0075910 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID adbe8b9e-12c7-44a2-a05e-3372f89ed694)... 504s nova [W] Timed out waiting for 09e1b1ca-d5a9-4211-b283-8e59b02f67ee to get deleted.