0s autopkgtest [15:52:02]: starting date and time: 2025-05-03 15:52:02+0000 0s autopkgtest [15:52:02]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [15:52:02]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lb5ndu5h/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:setuptools --apt-upgrade kleborate --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=setuptools/78.1.0-1.2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-17.secgroup --name adt-questing-amd64-kleborate-20250503-155202-juju-7f2275-prod-proposed-migration-environment-15-24fde045-1b59-41e8-846e-2cc459ca0043 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 55s autopkgtest [15:52:57]: testbed dpkg architecture: amd64 55s autopkgtest [15:52:57]: testbed apt version: 3.0.0 55s autopkgtest [15:52:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 55s autopkgtest [15:52:57]: testbed release detected to be: None 56s autopkgtest [15:52:58]: updating testbed package index (apt update) 56s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 57s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 57s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 57s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 57s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [150 kB] 57s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1538 kB] 57s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.5 kB] 57s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [199 kB] 57s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [141 kB] 57s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [603 kB] 57s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1473 kB] 57s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [49.1 kB] 57s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 58s Fetched 4320 kB in 1s (3612 kB/s) 59s Reading package lists... 59s autopkgtest [15:53:01]: upgrading testbed (apt dist-upgrade and autopurge) 59s Reading package lists... 60s Building dependency tree... 60s Reading state information... 60s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 60s Starting 2 pkgProblemResolver with broken count: 0 60s Done 61s Entering ResolveByKeep 61s 61s Calculating upgrade... 61s The following packages will be upgraded: 61s debianutils libmbim-glib4 libmbim-proxy libnftnl11 libqmi-glib5 libqmi-proxy 61s python3-lazr.restfulclient python3-pkg-resources python3-setuptools 61s 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 61s Need to get 2182 kB of archives. 61s After this operation, 31.7 kB disk space will be freed. 61s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 62s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 62s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 62s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 62s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 62s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 62s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3-pkg-resources all 78.1.0-1.2 [144 kB] 62s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 python3-setuptools all 78.1.0-1.2 [660 kB] 62s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 62s Fetched 2182 kB in 1s (3482 kB/s) 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 63s Preparing to unpack .../debianutils_5.22_amd64.deb ... 63s Unpacking debianutils (5.22) over (5.21) ... 63s Setting up debianutils (5.22) ... 63s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 63s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 63s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 63s Preparing to unpack .../1-libmbim-proxy_1.32.0-1_amd64.deb ... 63s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 63s Preparing to unpack .../2-libmbim-glib4_1.32.0-1_amd64.deb ... 63s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 63s Preparing to unpack .../3-libqmi-proxy_1.36.0-1_amd64.deb ... 63s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 63s Preparing to unpack .../4-libqmi-glib5_1.36.0-1_amd64.deb ... 63s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 63s Preparing to unpack .../5-python3-pkg-resources_78.1.0-1.2_all.deb ... 63s Unpacking python3-pkg-resources (78.1.0-1.2) over (75.8.0-1) ... 63s Preparing to unpack .../6-python3-setuptools_78.1.0-1.2_all.deb ... 63s Unpacking python3-setuptools (78.1.0-1.2) over (75.8.0-1) ... 63s Preparing to unpack .../7-python3-lazr.restfulclient_0.14.6-3_all.deb ... 63s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 63s Setting up python3-pkg-resources (78.1.0-1.2) ... 64s Setting up python3-setuptools (78.1.0-1.2) ... 64s Setting up libnftnl11:amd64 (1.2.9-1) ... 64s Setting up python3-lazr.restfulclient (0.14.6-3) ... 64s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 64s Setting up libmbim-proxy (1.32.0-1) ... 64s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 64s Setting up libqmi-proxy (1.36.0-1) ... 65s Processing triggers for libc-bin (2.41-6ubuntu1) ... 65s Processing triggers for man-db (2.13.0-1) ... 66s Reading package lists... 66s Building dependency tree... 66s Reading state information... 67s Starting pkgProblemResolver with broken count: 0 67s Starting 2 pkgProblemResolver with broken count: 0 67s Done 67s Solving dependencies... 67s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 70s autopkgtest [15:53:12]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 70s autopkgtest [15:53:12]: @@@@@@@@@@@@@@@@@@@@ apt-source kleborate 76s Get:1 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (dsc) [2212 B] 76s Get:2 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (tar) [91.6 MB] 76s Get:3 http://ftpmaster.internal/ubuntu questing/universe kleborate 2.4.1-4 (diff) [5997 kB] 76s gpgv: Signature made Sun Feb 16 22:29:32 2025 UTC 76s gpgv: using RSA key 8F6DE104377F3B11E741748731F3144544A1741A 76s gpgv: issuer "tchet@debian.org" 76s gpgv: Can't check signature: No public key 76s dpkg-source: warning: cannot verify inline signature for ./kleborate_2.4.1-4.dsc: no acceptable signature found 78s autopkgtest [15:53:20]: testing package kleborate version 2.4.1-4 78s autopkgtest [15:53:20]: build not needed 85s autopkgtest [15:53:27]: test run-unit-test: preparing testbed 85s Reading package lists... 85s Building dependency tree... 85s Reading state information... 86s Starting pkgProblemResolver with broken count: 0 86s Starting 2 pkgProblemResolver with broken count: 0 86s Done 86s The following NEW packages will be installed: 86s fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 86s kaptive kaptive-data kleborate kleborate-examples libblas3 libcairo2 86s libcapnp-1.1.0 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 86s libgraphite2-3 libgsl28 libgslcblas0 libharfbuzz0b libimagequant0 libjbig0 86s libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblerc4 libmbedcrypto16 86s libmbedtls21 libmbedx509-7 libmurmurhash2 libopenjp2-7 libpixman-1-0 86s libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2 libwebpmux3 86s libxcb-render0 libxcb-shm0 libxrender1 mash ncbi-blast+ ncbi-data 86s python3-biopython python3-cairo python3-freetype python3-numpy 86s python3-numpy-dev python3-pil python3-reportlab python3-rlpycairo sgml-base 86s w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 86s 0 upgraded, 59 newly installed, 0 to remove and 0 not upgraded. 86s Need to get 74.3 MB of archives. 86s After this operation, 289 MB of additional disk space will be used. 86s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 86s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 86s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 87s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 87s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 87s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 sgml-base all 1.31 [11.4 kB] 87s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 87s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 87s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libfontenc1 amd64 1:1.1.8-1build1 [14.0 kB] 87s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 87s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 87s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 xfonts-utils amd64 1:7.7+7 [97.1 kB] 87s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 87s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 87s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 87s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 87s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 87s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 87s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 87s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 87s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 87s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 87s Get:23 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 87s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 87s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 87s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 87s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 87s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 87s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 87s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 87s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 87s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 88s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 88s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 88s Get:35 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 88s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 88s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 88s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 88s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 python3-cairo amd64 1.27.0-2 [124 kB] 88s Get:40 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-freetype all 2.5.1-1 [92.3 kB] 88s Get:41 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 88s Get:42 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-reportlab all 4.3.1-1 [1137 kB] 88s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 xml-core all 0.19 [20.3 kB] 88s Get:44 http://ftpmaster.internal/ubuntu questing/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 88s Get:45 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-biopython amd64 1.85+dfsg-2build1 [1739 kB] 88s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 ncbi-data all 6.1.20170106+dfsg2-5 [3966 kB] 88s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 libmbedcrypto16 amd64 3.6.2-3ubuntu1 [276 kB] 88s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 libmbedx509-7 amd64 3.6.2-3ubuntu1 [37.1 kB] 88s Get:49 http://ftpmaster.internal/ubuntu questing/universe amd64 libmbedtls21 amd64 3.6.2-3ubuntu1 [126 kB] 88s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 ncbi-blast+ amd64 2.16.0+ds-6build1 [15.8 MB] 88s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 kaptive all 2.0.8-1 [28.1 kB] 88s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 kaptive-data all 2.0.8-1 [5432 kB] 89s Get:53 http://ftpmaster.internal/ubuntu questing/universe amd64 libcapnp-1.1.0 amd64 1.1.0-2 [1533 kB] 89s Get:54 http://ftpmaster.internal/ubuntu questing/universe amd64 libgslcblas0 amd64 2.8+dfsg-5ubuntu1 [113 kB] 89s Get:55 http://ftpmaster.internal/ubuntu questing/universe amd64 libgsl28 amd64 2.8+dfsg-5ubuntu1 [1043 kB] 89s Get:56 http://ftpmaster.internal/ubuntu questing/universe amd64 libmurmurhash2 amd64 1.6-1 [5770 B] 89s Get:57 http://ftpmaster.internal/ubuntu questing/universe amd64 mash amd64 2.3+dfsg-6build2 [160 kB] 89s Get:58 http://ftpmaster.internal/ubuntu questing/universe amd64 kleborate amd64 2.4.1-4 [8750 kB] 89s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 kleborate-examples all 2.4.1-4 [5990 kB] 89s Fetched 74.3 MB in 3s (24.5 MB/s) 89s Selecting previously unselected package python3-numpy-dev:amd64. 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80528 files and directories currently installed.) 89s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 89s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 89s Selecting previously unselected package libblas3:amd64. 89s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 89s Unpacking libblas3:amd64 (3.12.1-2) ... 89s Selecting previously unselected package libgfortran5:amd64. 89s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 89s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 90s Selecting previously unselected package liblapack3:amd64. 90s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 90s Unpacking liblapack3:amd64 (3.12.1-2) ... 90s Selecting previously unselected package python3-numpy. 90s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 90s Unpacking python3-numpy (1:2.2.3+ds-5) ... 90s Selecting previously unselected package sgml-base. 90s Preparing to unpack .../05-sgml-base_1.31_all.deb ... 90s Unpacking sgml-base (1.31) ... 90s Selecting previously unselected package fonts-dejavu-mono. 90s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 90s Unpacking fonts-dejavu-mono (2.37-8) ... 90s Selecting previously unselected package fonts-dejavu-core. 90s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 90s Unpacking fonts-dejavu-core (2.37-8) ... 90s Selecting previously unselected package libfontenc1:amd64. 90s Preparing to unpack .../08-libfontenc1_1%3a1.1.8-1build1_amd64.deb ... 90s Unpacking libfontenc1:amd64 (1:1.1.8-1build1) ... 90s Selecting previously unselected package x11-common. 90s Preparing to unpack .../09-x11-common_1%3a7.7+23ubuntu4_all.deb ... 90s Unpacking x11-common (1:7.7+23ubuntu4) ... 90s Selecting previously unselected package xfonts-encodings. 90s Preparing to unpack .../10-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 90s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 90s Selecting previously unselected package xfonts-utils. 90s Preparing to unpack .../11-xfonts-utils_1%3a7.7+7_amd64.deb ... 90s Unpacking xfonts-utils (1:7.7+7) ... 90s Selecting previously unselected package fonts-urw-base35. 90s Preparing to unpack .../12-fonts-urw-base35_20200910-8_all.deb ... 90s Unpacking fonts-urw-base35 (20200910-8) ... 90s Selecting previously unselected package fontconfig-config. 90s Preparing to unpack .../13-fontconfig-config_2.15.0-2.2ubuntu1_amd64.deb ... 91s Unpacking fontconfig-config (2.15.0-2.2ubuntu1) ... 91s Selecting previously unselected package libgomp1:amd64. 91s Preparing to unpack .../14-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 91s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 91s Selecting previously unselected package libimagequant0:amd64. 91s Preparing to unpack .../15-libimagequant0_2.18.0-1build1_amd64.deb ... 91s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 91s Selecting previously unselected package libjpeg-turbo8:amd64. 91s Preparing to unpack .../16-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 91s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 91s Selecting previously unselected package libjpeg8:amd64. 91s Preparing to unpack .../17-libjpeg8_8c-2ubuntu11_amd64.deb ... 91s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 91s Selecting previously unselected package liblcms2-2:amd64. 91s Preparing to unpack .../18-liblcms2-2_2.16-2_amd64.deb ... 91s Unpacking liblcms2-2:amd64 (2.16-2) ... 91s Selecting previously unselected package libopenjp2-7:amd64. 91s Preparing to unpack .../19-libopenjp2-7_2.5.3-2_amd64.deb ... 91s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 91s Selecting previously unselected package libgraphite2-3:amd64. 91s Preparing to unpack .../20-libgraphite2-3_1.3.14-2ubuntu1_amd64.deb ... 91s Unpacking libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 91s Selecting previously unselected package libharfbuzz0b:amd64. 91s Preparing to unpack .../21-libharfbuzz0b_10.2.0-1_amd64.deb ... 91s Unpacking libharfbuzz0b:amd64 (10.2.0-1) ... 91s Selecting previously unselected package libraqm0:amd64. 91s Preparing to unpack .../22-libraqm0_0.10.2-1_amd64.deb ... 91s Unpacking libraqm0:amd64 (0.10.2-1) ... 91s Selecting previously unselected package libdeflate0:amd64. 91s Preparing to unpack .../23-libdeflate0_1.23-2_amd64.deb ... 91s Unpacking libdeflate0:amd64 (1.23-2) ... 91s Selecting previously unselected package libjbig0:amd64. 91s Preparing to unpack .../24-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 91s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 91s Selecting previously unselected package liblerc4:amd64. 91s Preparing to unpack .../25-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 91s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 91s Selecting previously unselected package libsharpyuv0:amd64. 91s Preparing to unpack .../26-libsharpyuv0_1.5.0-0.1_amd64.deb ... 91s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 91s Selecting previously unselected package libwebp7:amd64. 91s Preparing to unpack .../27-libwebp7_1.5.0-0.1_amd64.deb ... 91s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 91s Selecting previously unselected package libtiff6:amd64. 91s Preparing to unpack .../28-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 91s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 91s Selecting previously unselected package libwebpdemux2:amd64. 91s Preparing to unpack .../29-libwebpdemux2_1.5.0-0.1_amd64.deb ... 91s Unpacking libwebpdemux2:amd64 (1.5.0-0.1) ... 91s Selecting previously unselected package libwebpmux3:amd64. 91s Preparing to unpack .../30-libwebpmux3_1.5.0-0.1_amd64.deb ... 91s Unpacking libwebpmux3:amd64 (1.5.0-0.1) ... 91s Selecting previously unselected package python3-pil:amd64. 91s Preparing to unpack .../31-python3-pil_11.1.0-5build1_amd64.deb ... 91s Unpacking python3-pil:amd64 (11.1.0-5build1) ... 91s Selecting previously unselected package libfontconfig1:amd64. 91s Preparing to unpack .../32-libfontconfig1_2.15.0-2.2ubuntu1_amd64.deb ... 91s Unpacking libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 91s Selecting previously unselected package libpixman-1-0:amd64. 91s Preparing to unpack .../33-libpixman-1-0_0.44.0-3_amd64.deb ... 91s Unpacking libpixman-1-0:amd64 (0.44.0-3) ... 91s Selecting previously unselected package libxcb-render0:amd64. 91s Preparing to unpack .../34-libxcb-render0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libxcb-shm0:amd64. 91s Preparing to unpack .../35-libxcb-shm0_1.17.0-2_amd64.deb ... 91s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 91s Selecting previously unselected package libxrender1:amd64. 91s Preparing to unpack .../36-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 91s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 91s Selecting previously unselected package libcairo2:amd64. 91s Preparing to unpack .../37-libcairo2_1.18.4-1_amd64.deb ... 91s Unpacking libcairo2:amd64 (1.18.4-1) ... 91s Selecting previously unselected package python3-cairo. 91s Preparing to unpack .../38-python3-cairo_1.27.0-2_amd64.deb ... 91s Unpacking python3-cairo (1.27.0-2) ... 91s Selecting previously unselected package python3-freetype. 91s Preparing to unpack .../39-python3-freetype_2.5.1-1_all.deb ... 91s Unpacking python3-freetype (2.5.1-1) ... 91s Selecting previously unselected package python3-rlpycairo. 91s Preparing to unpack .../40-python3-rlpycairo_0.3.0-3_all.deb ... 91s Unpacking python3-rlpycairo (0.3.0-3) ... 91s Selecting previously unselected package python3-reportlab. 92s Preparing to unpack .../41-python3-reportlab_4.3.1-1_all.deb ... 92s Unpacking python3-reportlab (4.3.1-1) ... 92s Selecting previously unselected package xml-core. 92s Preparing to unpack .../42-xml-core_0.19_all.deb ... 92s Unpacking xml-core (0.19) ... 92s Selecting previously unselected package w3c-sgml-lib. 92s Preparing to unpack .../43-w3c-sgml-lib_1.3-3_all.deb ... 92s Unpacking w3c-sgml-lib (1.3-3) ... 92s Selecting previously unselected package python3-biopython. 92s Preparing to unpack .../44-python3-biopython_1.85+dfsg-2build1_amd64.deb ... 92s Unpacking python3-biopython (1.85+dfsg-2build1) ... 92s Selecting previously unselected package ncbi-data. 92s Preparing to unpack .../45-ncbi-data_6.1.20170106+dfsg2-5_all.deb ... 92s Unpacking ncbi-data (6.1.20170106+dfsg2-5) ... 92s Selecting previously unselected package libmbedcrypto16:amd64. 92s Preparing to unpack .../46-libmbedcrypto16_3.6.2-3ubuntu1_amd64.deb ... 92s Unpacking libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 92s Selecting previously unselected package libmbedx509-7:amd64. 92s Preparing to unpack .../47-libmbedx509-7_3.6.2-3ubuntu1_amd64.deb ... 92s Unpacking libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 92s Selecting previously unselected package libmbedtls21:amd64. 92s Preparing to unpack .../48-libmbedtls21_3.6.2-3ubuntu1_amd64.deb ... 92s Unpacking libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 92s Selecting previously unselected package ncbi-blast+. 92s Preparing to unpack .../49-ncbi-blast+_2.16.0+ds-6build1_amd64.deb ... 92s Unpacking ncbi-blast+ (2.16.0+ds-6build1) ... 92s Selecting previously unselected package kaptive. 92s Preparing to unpack .../50-kaptive_2.0.8-1_all.deb ... 92s Unpacking kaptive (2.0.8-1) ... 92s Selecting previously unselected package kaptive-data. 92s Preparing to unpack .../51-kaptive-data_2.0.8-1_all.deb ... 92s Unpacking kaptive-data (2.0.8-1) ... 93s Selecting previously unselected package libcapnp-1.1.0:amd64. 93s Preparing to unpack .../52-libcapnp-1.1.0_1.1.0-2_amd64.deb ... 93s Unpacking libcapnp-1.1.0:amd64 (1.1.0-2) ... 93s Selecting previously unselected package libgslcblas0:amd64. 93s Preparing to unpack .../53-libgslcblas0_2.8+dfsg-5ubuntu1_amd64.deb ... 93s Unpacking libgslcblas0:amd64 (2.8+dfsg-5ubuntu1) ... 93s Selecting previously unselected package libgsl28:amd64. 93s Preparing to unpack .../54-libgsl28_2.8+dfsg-5ubuntu1_amd64.deb ... 93s Unpacking libgsl28:amd64 (2.8+dfsg-5ubuntu1) ... 93s Selecting previously unselected package libmurmurhash2:amd64. 93s Preparing to unpack .../55-libmurmurhash2_1.6-1_amd64.deb ... 93s Unpacking libmurmurhash2:amd64 (1.6-1) ... 93s Selecting previously unselected package mash. 93s Preparing to unpack .../56-mash_2.3+dfsg-6build2_amd64.deb ... 93s Unpacking mash (2.3+dfsg-6build2) ... 93s Selecting previously unselected package kleborate. 93s Preparing to unpack .../57-kleborate_2.4.1-4_amd64.deb ... 93s Unpacking kleborate (2.4.1-4) ... 93s Selecting previously unselected package kleborate-examples. 93s Preparing to unpack .../58-kleborate-examples_2.4.1-4_all.deb ... 93s Unpacking kleborate-examples (2.4.1-4) ... 93s Setting up libgraphite2-3:amd64 (1.3.14-2ubuntu1) ... 93s Setting up liblcms2-2:amd64 (2.16-2) ... 93s Setting up ncbi-data (6.1.20170106+dfsg2-5) ... 93s Setting up libpixman-1-0:amd64 (0.44.0-3) ... 93s Setting up libsharpyuv0:amd64 (1.5.0-0.1) ... 93s Setting up liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 93s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 93s Setting up libgslcblas0:amd64 (2.8+dfsg-5ubuntu1) ... 93s Setting up libmurmurhash2:amd64 (1.6-1) ... 93s Setting up libxcb-render0:amd64 (1.17.0-2) ... 93s Setting up x11-common (1:7.7+23ubuntu4) ... 94s Setting up libdeflate0:amd64 (1.23-2) ... 94s Setting up libxcb-shm0:amd64 (1.17.0-2) ... 94s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 94s Setting up python3-freetype (2.5.1-1) ... 94s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 94s Setting up libfontenc1:amd64 (1:1.1.8-1build1) ... 94s Setting up libblas3:amd64 (3.12.1-2) ... 94s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 94s Setting up kleborate-examples (2.4.1-4) ... 94s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 94s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 94s Setting up fonts-dejavu-mono (2.37-8) ... 94s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 94s Setting up fonts-dejavu-core (2.37-8) ... 94s Setting up kaptive-data (2.0.8-1) ... 94s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 94s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 94s Setting up libwebp7:amd64 (1.5.0-0.1) ... 94s Setting up libopenjp2-7:amd64 (2.5.3-2) ... 94s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 94s Setting up sgml-base (1.31) ... 94s Setting up libcapnp-1.1.0:amd64 (1.1.0-2) ... 94s Setting up libmbedcrypto16:amd64 (3.6.2-3ubuntu1) ... 94s Setting up libgsl28:amd64 (2.8+dfsg-5ubuntu1) ... 94s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 94s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 94s Setting up liblapack3:amd64 (3.12.1-2) ... 94s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 94s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 94s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 94s Setting up xfonts-utils (1:7.7+7) ... 94s Setting up libmbedx509-7:amd64 (3.6.2-3ubuntu1) ... 94s Setting up libraqm0:amd64 (0.10.2-1) ... 94s Setting up mash (2.3+dfsg-6build2) ... 94s Setting up python3-numpy (1:2.2.3+ds-5) ... 96s Setting up libmbedtls21:amd64 (3.6.2-3ubuntu1) ... 96s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 96s Setting up xml-core (0.19) ... 96s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 96s Setting up fonts-urw-base35 (20200910-8) ... 96s Setting up libcairo2:amd64 (1.18.4-1) ... 96s Setting up ncbi-blast+ (2.16.0+ds-6build1) ... 96s Setting up python3-pil:amd64 (11.1.0-5build1) ... 96s Setting up python3-cairo (1.27.0-2) ... 97s Setting up python3-rlpycairo (0.3.0-3) ... 97s Setting up python3-reportlab (4.3.1-1) ... 97s Processing triggers for man-db (2.13.0-1) ... 98s Processing triggers for libc-bin (2.41-6ubuntu1) ... 98s Processing triggers for sgml-base (1.31) ... 98s Setting up w3c-sgml-lib (1.3-3) ... 126s Setting up python3-biopython (1.85+dfsg-2build1) ... 127s Setting up kaptive (2.0.8-1) ... 127s Setting up kleborate (2.4.1-4) ... 129s autopkgtest [15:54:11]: test run-unit-test: [----------------------- 130s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 130s warnings.warn( 190s strain species ST virulence_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus 190s Klebs_HS11286 Klebsiella pneumoniae ST11 1 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 190s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 KL1 190s MGH78578 Klebsiella pneumoniae ST38 0 - 0 - 0 - 0 - 0 - 0 - wzi50 KL15 (KL17,KL51,KL52) 190s NTUH-K2044 Klebsiella pneumoniae ST23 4 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 191s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 191s warnings.warn( 290s strain species ST virulence_score resistance_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits 290s Klebs_HS11286 Klebsiella pneumoniae ST11 1 3 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 aadA2^;rmtB;strA.v1^;strB.v1 - - - - - - - sul2 tet(G).v1 - dfrA12* TEM-1;TEM-1;TEM-1 - CTX-M-14;CTX-M-14 - KPC-2 SHV-11 35Q OmpK35-40% PmrB-10% GyrA-83I;ParC-80I aac(3)-IId*?-0% floR.v2*?;sul1?-63% 290s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 0 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 KL1 - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 290s MGH78578 Klebsiella pneumoniae ST38 0 1 - 0 - 0 - 0 - 0 - 0 - wzi50 KL15 (KL17,KL51,KL52) aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1 - - - - - catA1*;cmlA5 - sul1;sul2 tet(D) - - TEM-1D.v1^;TEM-1D.v1^ - SHV-12 - - SHV-11^ 238S;240K;35Q;35Q OmpK35-86% - GyrA-83Y OXA-9.v1*-42% - 290s NTUH-K2044 Klebsiella pneumoniae ST23 4 0 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 290s /usr/lib/python3/dist-packages/Bio/pairwise2.py:278: BiopythonDeprecationWarning: Bio.pairwise2 has been deprecated, and we intend to remove it in a future release of Biopython. As an alternative, please consider using Bio.Align.PairwiseAligner as a replacement, and contact the Biopython developers if you still need the Bio.pairwise2 module. 290s warnings.warn( 693s strain species ST virulence_score resistance_score Yersiniabactin YbST Colibactin CbST Aerobactin AbST Salmochelin SmST RmpADC RmST rmpA2 wzi K_locus K_locus_confidence O_locus O_locus_confidence AGly_acquired Col_acquired Fcyn_acquired Flq_acquired Gly_acquired MLS_acquired Phe_acquired Rif_acquired Sul_acquired Tet_acquired Tgc_acquired Tmt_acquired Bla_acquired Bla_inhR_acquired Bla_ESBL_acquired Bla_ESBL_inhR_acquired Bla_Carb_acquired Bla_chr SHV_mutations Omp_mutations Col_mutations Flq_mutations truncated_resistance_hits spurious_resistance_hits 693s Klebs_HS11286 Klebsiella pneumoniae ST11 1 3 ybt 9; ICEKp3 15 - 0 - 0 - 0 - 0 - wzi74 KL103 Very high O1/O2v1 Very high aadA2^;rmtB;strA.v1^;strB.v1 - - - - - - - sul2 tet(G).v1 - dfrA12* TEM-1;TEM-1;TEM-1 - CTX-M-14;CTX-M-14 - KPC-2 SHV-11 35Q OmpK35-40% PmrB-10% GyrA-83I;ParC-80I aac(3)-IId*?-0% floR.v2*?;sul1?-63% 693s Klebs_Kp1084 Klebsiella pneumoniae ST23 2 0 ybt 1; ICEKp10 47 clb 2 37 - 0 - 0 - 0 - wzi172 unknown (KL1) None O1/O2v2 High - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 693s MGH78578 Klebsiella pneumoniae ST38 0 1 - 0 - 0 - 0 - 0 - 0 - wzi50 KL52 Perfect OL13 High aac(6')-Ib'.v1;aadA*;ant(2'')-Ia;aph(3')-Ia;strA.v1;strB.v1 - - - - - catA1*;cmlA5 - sul1;sul2 tet(D) - - TEM-1D.v1^;TEM-1D.v1^ - SHV-12 - - SHV-11^ 238S;240K;35Q;35Q OmpK35-86% - GyrA-83Y OXA-9.v1*-42% - 693s NTUH-K2044 Klebsiella pneumoniae ST23 4 0 ybt 2; ICEKp1 326 - 0 iuc 1 1 iro 1,iro 3 19,18 rmp 1; KpVP-1 (truncated),rmp 3; ICEKp1 (truncated) 26-1LV,119 rmpA2_3-47% wzi1 KL1 Perfect O1/O2v2 Very high - - - - - - - - - - - - - - - - - SHV-11^ 35Q - - - - - 693s autopkgtest [16:03:35]: test run-unit-test: -----------------------] 694s autopkgtest [16:03:36]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 694s run-unit-test PASS 694s autopkgtest [16:03:36]: @@@@@@@@@@@@@@@@@@@@ summary 694s run-unit-test PASS 711s nova [W] Skipping flock for amd64 711s Creating nova instance adt-questing-amd64-kleborate-20250503-155202-juju-7f2275-prod-proposed-migration-environment-15-24fde045-1b59-41e8-846e-2cc459ca0043 from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 711s nova [W] Timed out waiting for e5f474b9-2a59-421e-90d7-043455053cd8 to get deleted.