0s autopkgtest [18:18:48]: starting date and time: 2025-05-03 18:18:48+0000 0s autopkgtest [18:18:48]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 0s autopkgtest [18:18:48]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.3tvrs1c2/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:matplotlib --apt-upgrade gudhi --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=matplotlib/3.10.1+dfsg1-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu2-ram4-disk20 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-4.secgroup --name adt-questing-amd64-gudhi-20250503-181848-juju-7f2275-prod-proposed-migration-environment-15-c6bb359d-5ca4-4aac-a48d-be522aa67cbf --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 66s autopkgtest [18:19:54]: testbed dpkg architecture: amd64 66s autopkgtest [18:19:54]: testbed apt version: 3.0.0 66s autopkgtest [18:19:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 67s autopkgtest [18:19:55]: testbed release detected to be: None 67s autopkgtest [18:19:55]: updating testbed package index (apt update) 68s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 68s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 68s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 68s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 68s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [33.7 kB] 68s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [147 kB] 68s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [1457 kB] 68s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [141 kB] 68s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [197 kB] 68s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [570 kB] 68s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [1416 kB] 68s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [23.1 kB] 68s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [48.3 kB] 69s Fetched 4144 kB in 1s (3729 kB/s) 70s Reading package lists... 70s autopkgtest [18:19:58]: upgrading testbed (apt dist-upgrade and autopurge) 70s Reading package lists... 71s Building dependency tree... 71s Reading state information... 71s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 71s Starting 2 pkgProblemResolver with broken count: 0 71s Done 72s Entering ResolveByKeep 72s 72s Calculating upgrade... 72s The following packages will be upgraded: 72s cloud-init cloud-init-base debianutils libmbim-glib4 libmbim-proxy 72s libnftnl11 libqmi-glib5 libqmi-proxy python3-lazr.restfulclient sos 72s 10 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 72s Need to get 2366 kB of archives. 72s After this operation, 113 kB disk space will be freed. 72s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 debianutils amd64 5.22 [93.0 kB] 73s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libnftnl11 amd64 1.2.9-1 [69.1 kB] 73s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init-base all 25.2~1g7a0265d3-0ubuntu1 [619 kB] 73s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-proxy amd64 1.32.0-1 [6276 B] 73s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 libmbim-glib4 amd64 1.32.0-1 [233 kB] 73s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-proxy amd64 1.36.0-1 [6220 B] 73s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libqmi-glib5 amd64 1.36.0-1 [920 kB] 73s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lazr.restfulclient all 0.14.6-3 [51.0 kB] 73s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 sos all 4.9.1-1 [367 kB] 73s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 cloud-init all 25.2~1g7a0265d3-0ubuntu1 [2106 B] 73s Preconfiguring packages ... 73s Fetched 2366 kB in 1s (3772 kB/s) 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 74s Preparing to unpack .../debianutils_5.22_amd64.deb ... 74s Unpacking debianutils (5.22) over (5.21) ... 74s Setting up debianutils (5.22) ... 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80514 files and directories currently installed.) 74s Preparing to unpack .../0-libnftnl11_1.2.9-1_amd64.deb ... 74s Unpacking libnftnl11:amd64 (1.2.9-1) over (1.2.8-1) ... 74s Preparing to unpack .../1-cloud-init-base_25.2~1g7a0265d3-0ubuntu1_all.deb ... 74s Unpacking cloud-init-base (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 74s Preparing to unpack .../2-libmbim-proxy_1.32.0-1_amd64.deb ... 74s Unpacking libmbim-proxy (1.32.0-1) over (1.31.2-0ubuntu4) ... 74s Preparing to unpack .../3-libmbim-glib4_1.32.0-1_amd64.deb ... 74s Unpacking libmbim-glib4:amd64 (1.32.0-1) over (1.31.2-0ubuntu4) ... 74s Preparing to unpack .../4-libqmi-proxy_1.36.0-1_amd64.deb ... 74s Unpacking libqmi-proxy (1.36.0-1) over (1.35.6-1) ... 74s Preparing to unpack .../5-libqmi-glib5_1.36.0-1_amd64.deb ... 74s Unpacking libqmi-glib5:amd64 (1.36.0-1) over (1.35.6-1) ... 74s Preparing to unpack .../6-python3-lazr.restfulclient_0.14.6-3_all.deb ... 74s Unpacking python3-lazr.restfulclient (0.14.6-3) over (0.14.6-2) ... 74s Preparing to unpack .../7-sos_4.9.1-1_all.deb ... 75s Unpacking sos (4.9.1-1) over (4.9.0-6) ... 75s Preparing to unpack .../8-cloud-init_25.2~1g7a0265d3-0ubuntu1_all.deb ... 75s Unpacking cloud-init (25.2~1g7a0265d3-0ubuntu1) over (25.1.1-0ubuntu2) ... 75s Setting up sos (4.9.1-1) ... 75s Setting up libnftnl11:amd64 (1.2.9-1) ... 75s Setting up cloud-init-base (25.2~1g7a0265d3-0ubuntu1) ... 77s Setting up python3-lazr.restfulclient (0.14.6-3) ... 77s Setting up libmbim-glib4:amd64 (1.32.0-1) ... 77s Setting up cloud-init (25.2~1g7a0265d3-0ubuntu1) ... 77s Setting up libmbim-proxy (1.32.0-1) ... 77s Setting up libqmi-glib5:amd64 (1.36.0-1) ... 77s Setting up libqmi-proxy (1.36.0-1) ... 77s Processing triggers for libc-bin (2.41-6ubuntu1) ... 77s Processing triggers for rsyslog (8.2412.0-2ubuntu2) ... 77s Processing triggers for man-db (2.13.0-1) ... 79s Reading package lists... 79s Building dependency tree... 79s Reading state information... 80s Starting pkgProblemResolver with broken count: 0 80s Starting 2 pkgProblemResolver with broken count: 0 80s Done 80s Solving dependencies... 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s autopkgtest [18:20:08]: rebooting testbed after setup commands that affected boot 103s autopkgtest [18:20:31]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 106s autopkgtest [18:20:34]: @@@@@@@@@@@@@@@@@@@@ apt-source gudhi 111s Get:1 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (dsc) [3091 B] 111s Get:2 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (tar) [17.8 MB] 111s Get:3 http://ftpmaster.internal/ubuntu questing/universe gudhi 3.10.1+dfsg-3build1 (diff) [11.9 kB] 111s gpgv: Signature made Tue Mar 4 15:47:17 2025 UTC 111s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 111s gpgv: Can't check signature: No public key 111s dpkg-source: warning: cannot verify inline signature for ./gudhi_3.10.1+dfsg-3build1.dsc: no acceptable signature found 112s autopkgtest [18:20:40]: testing package gudhi version 3.10.1+dfsg-3build1 112s autopkgtest [18:20:40]: build not needed 116s autopkgtest [18:20:44]: test python-upstream.sh: preparing testbed 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 116s Starting pkgProblemResolver with broken count: 0 116s Starting 2 pkgProblemResolver with broken count: 0 116s Done 117s The following NEW packages will be installed: 117s blt fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx libblas3 117s libdeflate0 libfontconfig1 libgfortran5 libgomp1 libgraphite2-3 117s libharfbuzz0b libhwloc15 libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 117s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 117s libopenjp2-7 libqhull-r8.0 libraqm0 libsharpyuv0 libtbb12 libtbbbind-2-5 117s libtbbmalloc2 libtcl8.6 libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 117s libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data python3-all 117s python3-brotli python3-contourpy python3-cycler python3-decorator 117s python3-eagerpy python3-fonttools python3-fs python3-gudhi python3-iniconfig 117s python3-joblib python3-kiwisolver python3-lxml python3-lz4 117s python3-matplotlib python3-mpmath python3-numpy python3-numpy-dev 117s python3-pil python3-pil.imagetk python3-platformdirs python3-pluggy 117s python3-pot python3-pytest python3-scipy python3-sklearn python3-sklearn-lib 117s python3-sympy python3-threadpoolctl python3-tk python3-ufolib2 python3.13-tk 117s tk8.6-blt2.5 unicode-data x11-common 117s 0 upgraded, 76 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 85.8 MB of archives. 117s After this operation, 349 MB of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.3+ds-5 [148 kB] 117s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 117s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 117s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 118s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.3+ds-5 [5702 kB] 118s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 118s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 118s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 118s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 118s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 118s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 118s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 118s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 118s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 118s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 118s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 118s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 118s Get:18 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 118s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 118s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 118s Get:21 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 118s Get:22 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 118s Get:23 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-1 [194 kB] 118s Get:24 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 118s Get:25 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 118s Get:26 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 118s Get:27 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 118s Get:28 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 118s Get:29 http://ftpmaster.internal/ubuntu questing/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 118s Get:30 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 118s Get:31 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 118s Get:32 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 118s Get:33 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 118s Get:34 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 118s Get:35 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbbind-2-5 amd64 2022.0.0-2 [15.8 kB] 118s Get:36 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbbmalloc2 amd64 2022.0.0-2 [55.7 kB] 118s Get:37 http://ftpmaster.internal/ubuntu questing/universe amd64 libtbb12 amd64 2022.0.0-2 [103 kB] 118s Get:38 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 118s Get:39 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 118s Get:40 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 118s Get:41 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 118s Get:42 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 118s Get:43 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB] 118s Get:44 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python-matplotlib-data all 3.10.1+dfsg1-3 [2936 kB] 118s Get:45 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B] 118s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB] 118s Get:47 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 118s Get:48 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 118s Get:49 http://ftpmaster.internal/ubuntu questing/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 118s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-eagerpy all 0.30.0-3 [19.0 kB] 118s Get:51 http://ftpmaster.internal/ubuntu questing/main amd64 python3-platformdirs all 4.3.6-1 [16.8 kB] 118s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 118s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lxml amd64 5.3.2-1 [1407 kB] 118s Get:54 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lz4 amd64 4.4.0+dfsg-1build1 [27.0 kB] 118s Get:55 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB] 119s Get:56 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 119s Get:57 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 119s Get:58 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ufolib2 all 0.17.0+dfsg1-1 [33.5 kB] 119s Get:59 http://ftpmaster.internal/ubuntu questing/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 119s Get:60 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB] 119s Get:61 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-gudhi amd64 3.10.1+dfsg-3build1 [2207 kB] 119s Get:62 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 119s Get:63 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 119s Get:64 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB] 119s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 119s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 119s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-tk amd64 3.13.3-1 [107 kB] 119s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tk amd64 3.13.3-1 [9856 B] 119s Get:69 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B] 119s Get:70 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-matplotlib amd64 3.10.1+dfsg1-3 [18.1 MB] 120s Get:71 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 120s Get:72 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pot amd64 0.9.5+dfsg-1 [243 kB] 120s Get:73 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest all 8.3.5-1 [252 kB] 120s Get:74 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 120s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [4359 kB] 120s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 120s Fetched 85.8 MB in 3s (27.3 MB/s) 120s Selecting previously unselected package python3-numpy-dev:amd64. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80518 files and directories currently installed.) 121s Preparing to unpack .../00-python3-numpy-dev_1%3a2.2.3+ds-5_amd64.deb ... 121s Unpacking python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 121s Selecting previously unselected package libblas3:amd64. 121s Preparing to unpack .../01-libblas3_3.12.1-2_amd64.deb ... 121s Unpacking libblas3:amd64 (3.12.1-2) ... 121s Selecting previously unselected package libgfortran5:amd64. 121s Preparing to unpack .../02-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 121s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 121s Selecting previously unselected package liblapack3:amd64. 121s Preparing to unpack .../03-liblapack3_3.12.1-2_amd64.deb ... 121s Unpacking liblapack3:amd64 (3.12.1-2) ... 121s Selecting previously unselected package python3-numpy. 121s Preparing to unpack .../04-python3-numpy_1%3a2.2.3+ds-5_amd64.deb ... 121s Unpacking python3-numpy (1:2.2.3+ds-5) ... 121s Selecting previously unselected package libtcl8.6:amd64. 121s Preparing to unpack .../05-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 121s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 121s Selecting previously unselected package fonts-dejavu-mono. 121s Preparing to unpack .../06-fonts-dejavu-mono_2.37-8_all.deb ... 121s Unpacking fonts-dejavu-mono (2.37-8) ... 121s Selecting previously unselected package fonts-dejavu-core. 121s Preparing to unpack .../07-fonts-dejavu-core_2.37-8_all.deb ... 121s Unpacking 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up libxrender1:amd64 (1:0.9.10-1.1build1) ... 125s Setting up python3-joblib (1.4.2-3) ... 126s Setting up python3-lz4 (4.4.0+dfsg-1build1) ... 126s Setting up fonts-lyx (2.4.3-1) ... 126s Setting up python3-threadpoolctl (3.1.0-1) ... 126s Setting up x11-common (1:7.7+23ubuntu4) ... 126s Setting up libdeflate0:amd64 (1.23-2) ... 126s Setting up libqhull-r8.0:amd64 (2020.2-6build1) ... 126s Setting up python3-all (3.13.3-1) ... 126s Setting up libgomp1:amd64 (15-20250404-0ubuntu1) ... 126s Setting up libjbig0:amd64 (2.1-6.1ubuntu2) ... 126s Setting up python3-platformdirs (4.3.6-1) ... 126s Setting up python3-fs (2.4.16-7) ... 127s Setting up unicode-data (15.1.0-1) ... 127s Setting up python3-decorator (5.1.1-5) ... 127s Setting up libblas3:amd64 (3.12.1-2) ... 127s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 127s Setting up python3-brotli (1.1.0-2build4) ... 127s Setting up python3-cycler (0.12.1-1) ... 127s Setting up libimagequant0:amd64 (2.18.0-1build1) ... 127s Setting up fonts-dejavu-mono (2.37-8) ... 127s Setting up python3-kiwisolver (1.4.7-3build1) ... 127s Setting up libhwloc15:amd64 (2.12.0-1) ... 127s Setting up python3-numpy-dev:amd64 (1:2.2.3+ds-5) ... 127s Setting up libtcl8.6:amd64 (8.6.16+dfsg-1) ... 127s Setting up fonts-dejavu-core (2.37-8) ... 127s Setting up libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 127s Setting up libgfortran5:amd64 (15-20250404-0ubuntu1) ... 127s Setting up python3-pluggy (1.5.0-1) ... 127s Setting up libwebp7:amd64 (1.5.0-0.1) ... 127s Setting up libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 127s Setting up libopenjp2-7:amd64 (2.5.3-2) ... 127s Setting up libharfbuzz0b:amd64 (10.2.0-1) ... 127s Setting up libxss1:amd64 (1:1.2.3-1build3) ... 127s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 127s Setting up python3-mpmath (1.3.0-1) ... 128s Setting up python-matplotlib-data (3.10.1+dfsg1-3) ... 128s Setting up libwebpmux3:amd64 (1.5.0-0.1) ... 128s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 128s Setting up python3-sympy (1.13.3-5) ... 133s Setting up liblapack3:amd64 (3.12.1-2) ... 133s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 133s Setting up fontconfig-config (2.15.0-2.2ubuntu1) ... 133s Setting up python3-pytest (8.3.5-1) ... 133s Setting up libwebpdemux2:amd64 (1.5.0-0.1) ... 133s Setting up libtbbbind-2-5:amd64 (2022.0.0-2) ... 133s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 133s Setting up libraqm0:amd64 (0.10.2-1) ... 133s Setting up python3-numpy (1:2.2.3+ds-5) ... 135s Setting up python3-lxml:amd64 (5.3.2-1) ... 135s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 135s Setting up python3-contourpy (1.3.1-1build1) ... 135s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 135s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 135s Setting up libxft2:amd64 (2.3.6-1build1) ... 135s Setting up python3-scipy (1.14.1-4ubuntu2) ... 138s Setting up python3-pot (0.9.5+dfsg-1) ... 138s /usr/lib/python3/dist-packages/ot/unbalanced/_lbfgs.py:38: SyntaxWarning: invalid escape sequence '\m' 138s If None, then use :math:`\mathbf{c} = \mathbf{a} \mathbf{b}^T`. 139s Setting up libtk8.6:amd64 (8.6.16-1) ... 139s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ... 139s Setting up libtbb12:amd64 (2022.0.0-2) ... 139s Setting up python3.13-tk (3.13.3-1) ... 139s Setting up python3-pil:amd64 (11.1.0-5build1) ... 139s Setting up python3-eagerpy (0.30.0-3) ... 139s Setting up python3-sklearn (1.4.2+dfsg-8) ... 141s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 141s Setting up blt (2.5.3+dfsg-8) ... 141s Setting up python3-tk:amd64 (3.13.3-1) ... 141s Setting up python3-gudhi (3.10.1+dfsg-3build1) ... 141s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ... 141s Setting up python3-fonttools (4.55.3-2build1) ... 142s Setting up python3-ufolib2 (0.17.0+dfsg1-1) ... 142s Setting up python3-matplotlib (3.10.1+dfsg1-3) ... 143s Processing triggers for libc-bin (2.41-6ubuntu1) ... 143s Processing triggers for man-db (2.13.0-1) ... 145s autopkgtest [18:21:13]: test python-upstream.sh: [----------------------- 145s Running tests with Python 3.13. 147s Blacklist: ['test_knn.py', 'test_representations.py', 'test_wasserstein_distance.py::test_wasserstein_distance_grad', 'test_remote_datasets.py'] 147s Ignorelist: ['test_diff.py', 'test_dtm.py', 'test_perslay.py', 'test_wasserstein_with_tensors.py'] 147s ============================= test session starts ============================== 147s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 147s rootdir: /tmp/autopkgtest.JuWQYV/autopkgtest_tmp 147s plugins: typeguard-4.4.2 147s collected 158 items / 31 deselected / 127 selected 147s 147s test/test_alpha_complex.py ............. [ 10%] 148s test/test_betti_curve_representations.py .... [ 13%] 148s test/test_bottleneck_distance.py . [ 14%] 148s test/test_collapse_edges.py .. [ 15%] 148s test/test_cover_complex.py ....... [ 21%] 148s test/test_cubical_complex.py .................. [ 35%] 148s test/test_datasets_generators.py .. [ 37%] 148s test/test_dtm_rips_complex.py ... [ 39%] 148s test/test_euclidean_witness_complex.py .... [ 42%] 148s test/test_off.py .... [ 45%] 148s test/test_persistence_graphical_tools.py ...... [ 50%] 148s test/test_reader_utils.py ...... [ 55%] 148s test/test_representations_preprocessing.py . [ 55%] 148s test/test_rips_complex.py ....... [ 61%] 148s test/test_simplex_generators.py ... [ 63%] 148s test/test_simplex_tree.py .................... [ 79%] 148s test/test_simplex_tree_serialization.py .. [ 81%] 148s test/test_sklearn_cubical_persistence.py ... [ 83%] 149s test/test_sklearn_rips_persistence.py .... [ 86%] 149s test/test_subsampling.py ..... [ 90%] 149s test/test_tangential_complex.py . [ 91%] 149s test/test_time_delay.py . [ 92%] 149s test/test_tomato.py .. [ 93%] 149s test/test_wasserstein_barycenter.py . [ 94%] 149s test/test_weighted_rips_complex.py .... [ 97%] 149s test/test_witness_complex.py ... [100%] 149s 149s =============================== warnings summary =============================== 149s test/test_persistence_graphical_tools.py::test_limit_plot_persistence 149s /usr/lib/python3/dist-packages/gudhi/persistence_graphical_tools.py:107: UserWarning: usetex mode requires TeX. 149s warnings.warn("usetex mode requires TeX.") 149s 149s test/test_wasserstein_barycenter.py::test_lagrangian_barycenter 149s /usr/lib/python3/dist-packages/gudhi/wasserstein/barycenter.py:61: UserWarning: Computing barycenter of empty diag set. Returns None. 149s warnings.warn("Computing barycenter of empty diag set. Returns None.") 149s 149s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 149s ================ 127 passed, 31 deselected, 2 warnings in 3.45s ================ 149s ********** 150s autopkgtest [18:21:18]: test python-upstream.sh: -----------------------] 150s autopkgtest [18:21:18]: test python-upstream.sh: - - - - - - - - - - results - - - - - - - - - - 150s python-upstream.sh PASS 150s autopkgtest [18:21:18]: @@@@@@@@@@@@@@@@@@@@ summary 150s python-upstream.sh PASS 167s nova [W] Skipping flock for amd64 167s Creating nova instance adt-questing-amd64-gudhi-20250503-181848-juju-7f2275-prod-proposed-migration-environment-15-c6bb359d-5ca4-4aac-a48d-be522aa67cbf from image adt/ubuntu-questing-amd64-server-20250503.img (UUID 57b7c1b6-ad80-4bdb-b031-36f045f7f3b3)... 167s nova [W] Timed out waiting for 1ef2c56b-cd38-453c-9355-89728a9eb63f to get deleted.