1s autopkgtest [11:52:06]: starting date and time: 2025-05-06 11:52:06+0000 1s autopkgtest [11:52:06]: git checkout: 9986aa8c Merge branch 'skia/fix_network_interface' into 'ubuntu/production' 1s autopkgtest [11:52:06]: host juju-7f2275-prod-proposed-migration-environment-23; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.veivqgt5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:dials --apt-upgrade dials --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=dials/3.22.1+dfsg3-1build1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor builder-cpu4-ram8-disk100 --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-23@bos03-5.secgroup --name adt-questing-amd64-dials-20250506-115205-juju-7f2275-prod-proposed-migration-environment-23-8cf65ba1-5c2e-41e8-8b26-08fe6cac16e1 --image adt/ubuntu-questing-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-23 --net-id=net_prod-proposed-migration-amd64 -e TERM=linux --mirror=http://ftpmaster.internal/ubuntu/ 360s autopkgtest [11:58:05]: testbed dpkg architecture: amd64 360s autopkgtest [11:58:05]: testbed apt version: 3.0.0 360s autopkgtest [11:58:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 361s autopkgtest [11:58:06]: testbed release detected to be: None 361s autopkgtest [11:58:06]: updating testbed package index (apt update) 362s Get:1 http://ftpmaster.internal/ubuntu questing-proposed InRelease [110 kB] 362s Hit:2 http://ftpmaster.internal/ubuntu questing InRelease 362s Hit:3 http://ftpmaster.internal/ubuntu questing-updates InRelease 362s Hit:4 http://ftpmaster.internal/ubuntu questing-security InRelease 362s Get:5 http://ftpmaster.internal/ubuntu questing-proposed/main Sources [72.4 kB] 362s Get:6 http://ftpmaster.internal/ubuntu questing-proposed/universe Sources [595 kB] 362s Get:7 http://ftpmaster.internal/ubuntu questing-proposed/multiverse Sources [27.3 kB] 362s Get:8 http://ftpmaster.internal/ubuntu questing-proposed/main amd64 Packages [150 kB] 362s Get:9 http://ftpmaster.internal/ubuntu questing-proposed/main i386 Packages [106 kB] 362s Get:10 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 Packages [669 kB] 362s Get:11 http://ftpmaster.internal/ubuntu questing-proposed/universe i386 Packages [264 kB] 362s Get:12 http://ftpmaster.internal/ubuntu questing-proposed/multiverse i386 Packages [5028 B] 362s Get:13 http://ftpmaster.internal/ubuntu questing-proposed/multiverse amd64 Packages [18.4 kB] 363s Fetched 2018 kB in 1s (2290 kB/s) 363s Reading package lists... 364s autopkgtest [11:58:09]: upgrading testbed (apt dist-upgrade and autopurge) 364s Reading package lists... 364s Building dependency tree... 364s Reading state information... 365s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 365s Starting 2 pkgProblemResolver with broken count: 0 365s Done 366s Entering ResolveByKeep 366s 366s Calculating upgrade... 366s The following packages will be upgraded: 366s libperl5.40 perl perl-base perl-modules-5.40 python3-dbus 366s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 366s Need to get 10.3 MB of archives. 366s After this operation, 5120 B of additional disk space will be used. 366s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 libperl5.40 amd64 5.40.1-3 [4877 kB] 367s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 perl amd64 5.40.1-3 [262 kB] 367s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 perl-base amd64 5.40.1-3 [1840 kB] 367s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 perl-modules-5.40 all 5.40.1-3 [3217 kB] 367s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dbus amd64 1.4.0-1 [102 kB] 367s Fetched 10.3 MB in 1s (11.4 MB/s) 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 368s Preparing to unpack .../libperl5.40_5.40.1-3_amd64.deb ... 368s Unpacking libperl5.40:amd64 (5.40.1-3) over (5.40.1-2) ... 368s Preparing to unpack .../perl_5.40.1-3_amd64.deb ... 368s Unpacking perl (5.40.1-3) over (5.40.1-2) ... 368s Preparing to unpack .../perl-base_5.40.1-3_amd64.deb ... 368s Unpacking perl-base (5.40.1-3) over (5.40.1-2) ... 368s Setting up perl-base (5.40.1-3) ... 368s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 368s Preparing to unpack .../perl-modules-5.40_5.40.1-3_all.deb ... 368s Unpacking perl-modules-5.40 (5.40.1-3) over (5.40.1-2) ... 369s Preparing to unpack .../python3-dbus_1.4.0-1_amd64.deb ... 369s Unpacking python3-dbus (1.4.0-1) over (1.3.2-5build5) ... 369s Setting up python3-dbus (1.4.0-1) ... 369s Setting up perl-modules-5.40 (5.40.1-3) ... 369s Setting up libperl5.40:amd64 (5.40.1-3) ... 369s Setting up perl (5.40.1-3) ... 369s Processing triggers for man-db (2.13.1-1) ... 369s Processing triggers for libc-bin (2.41-6ubuntu1) ... 370s Reading package lists... 370s Building dependency tree... 370s Reading state information... 370s Starting pkgProblemResolver with broken count: 0 370s Starting 2 pkgProblemResolver with broken count: 0 370s Done 371s Solving dependencies... 371s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 373s autopkgtest [11:58:18]: testbed running kernel: Linux 6.14.0-15-generic #15-Ubuntu SMP PREEMPT_DYNAMIC Sun Apr 6 15:05:05 UTC 2025 374s autopkgtest [11:58:19]: @@@@@@@@@@@@@@@@@@@@ apt-source dials 376s Get:1 http://ftpmaster.internal/ubuntu questing-proposed/universe dials 3.22.1+dfsg3-1build1 (dsc) [2737 B] 376s Get:2 http://ftpmaster.internal/ubuntu questing-proposed/universe dials 3.22.1+dfsg3-1build1 (tar) [8378 kB] 376s Get:3 http://ftpmaster.internal/ubuntu questing-proposed/universe dials 3.22.1+dfsg3-1build1 (diff) [13.6 kB] 376s gpgv: Signature made Tue Mar 4 14:21:27 2025 UTC 376s gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 376s gpgv: Can't check signature: No public key 376s dpkg-source: warning: cannot verify inline signature for ./dials_3.22.1+dfsg3-1build1.dsc: no acceptable signature found 377s autopkgtest [11:58:22]: testing package dials version 3.22.1+dfsg3-1build1 377s autopkgtest [11:58:22]: build not needed 378s autopkgtest [11:58:23]: test command1: preparing testbed 378s Reading package lists... 379s Building dependency tree... 379s Reading state information... 379s Starting pkgProblemResolver with broken count: 0 379s Starting 2 pkgProblemResolver with broken count: 0 379s Done 380s The following NEW packages will be installed: 380s adwaita-icon-theme at-spi2-common bitshuffle blt clang-18 380s dconf-gsettings-backend dconf-service dials fontconfig fontconfig-config 380s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 380s fonts-glyphicons-halflings fonts-katex fonts-lato fonts-lyx fonts-mathjax 380s gdb gtk-update-icon-cache hicolor-icon-theme libaec0 libamd-comgr2 380s libamdhip64-5 libann-cctbx-dev libann-cctbx0 libantlr3c-3.4-0 libasan8 380s libatk-bridge2.0-0t64 libatk1.0-0t64 libatspi2.0-0t64 libavahi-client3 380s libavahi-common-data libavahi-common3 libbabeltrace1 libblas3 380s libboost-numpy1.83.0 libboost-python-dev libboost-python1.83-dev 380s libboost-python1.83.0 libboost-thread1.83.0 libboost-timer1.83.0 380s libboost1.83-dev libcairo-gobject2 libcairo2 libcbf1t64 libccp4-data 380s libccp4-dev libccp4c0t64 libccp4f0t64 libcctbx-dev libcctbx0 380s libclang-common-18-dev libclang1-18 libcolord2 libcups2t64 libdatrie1 380s libdconf1 libdeflate0 libdouble-conversion3 libdrm-intel1 libegl-mesa0 380s libegl1 libepoxy0 libevent-pthreads-2.1-7t64 libexpat1-dev libfabric1 380s libfontconfig1 libgbm1 libgc1 libgcc-14-dev libgdk-pixbuf-2.0-0 380s libgdk-pixbuf2.0-common libgfortran5 libgl1 libgl1-mesa-dri libglew2.2 380s libglu1-mesa libglut3.12 libglvnd0 libglx-mesa0 libglx0 libgomp1 380s libgraphite2-3 libgtk-3-0t64 libgtk-3-common libharfbuzz0b libhdf5-310 380s libhdf5-hl-310 libhdf5-openmpi-310 libhsa-runtime64-1 libhsakmt1 libhwasan0 380s libhwloc-plugins libhwloc15 libibmad5 libibumad3 libice6 libimagequant0 380s libinput-bin libinput10 libipt2 libitm1 libjbig0 libjpeg-turbo8 libjpeg8 380s libjs-bootstrap libjs-jquery libjs-jquery-ui libjs-katex libjs-mathjax 380s libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4 380s libllvm17t64 libllvmspirvlib18.1 liblsan0 liblzf1 libmd4c0 libmmdb2-0 380s libmtdev1t64 libmunge2 libnetcdf22 libnorm1t64 libnotify4 libobjc-14-dev 380s libobjc4 libopengl0 libopenjp2-7 libopenmpi40 libpango-1.0-0 380s libpangocairo-1.0-0 libpangoft2-1.0-0 libpciaccess0 libpcre2-16-0 380s libpcre2-32-0 libpgm-5.3-0t64 libpixman-1-0 libpmix2t64 libpocl2-common 380s libpocl2t64 libpsm-infinipath1 libpsm2-2 libpython3-dev libpython3.13-dev 380s libqhull-r8.0 libqt5core5t64 libqt5dbus5t64 libqt5designer5 libqt5gui5t64 380s libqt5help5 libqt5network5t64 libqt5opengl5t64 libqt5printsupport5t64 380s libqt5sql5t64 libqt5svg5 libqt5test5t64 libqt5widgets5t64 libqt5xml5t64 380s libquadmath0 libraqm0 librdmacm1t64 libsharpyuv0 libsm6 libsodium23 380s libsource-highlight-common libsource-highlight4t64 libssm2 libstdc++-14-dev 380s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 380s libucx0 libvulkan1 libwacom-common libwacom9 libwayland-client0 380s libwayland-cursor0 libwayland-egl1 libwayland-server0 libwebp7 libwebpdemux2 380s libwebpmux3 libwxbase3.2-1t64 libwxgtk-gl3.2-1t64 libwxgtk3.2-1t64 380s libx11-xcb1 libxcb-dri3-0 libxcb-glx0 libxcb-icccm4 libxcb-image0 380s libxcb-keysyms1 libxcb-present0 libxcb-randr0 libxcb-render-util0 380s libxcb-render0 libxcb-shape0 libxcb-shm0 libxcb-sync1 libxcb-util1 380s libxcb-xfixes0 libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxcomposite1 380s libxcursor1 libxdamage1 libxfixes3 libxft2 libxi6 libxinerama1 380s libxkbcommon-x11-0 libxnvctrl0 libxrandr2 libxrender1 libxshmfence1 380s libxslt1.1 libxss1 libxtst6 libxxf86vm1 libze1 libzmq5 llvm-18-linker-tools 380s llvm-spirv-18 mesa-libgallium ocl-icd-libopencl1 pocl-opencl-icd pymol-data 380s python-matplotlib-data python3-all python3-asttokens python3-brotli 380s python3-cctbx python3-comm python3-contourpy python3-coverage python3-cycler 380s python3-debugpy python3-decorator python3-dev python3-dials 380s python3-dials-data python3-execnet python3-executing python3-fabio 380s python3-fastjsonschema python3-flexcache python3-flexparser 380s python3-fonttools python3-fs python3-h5py python3-h5py-serial 380s python3-hdf5plugin python3-importlib-resources python3-iniconfig 380s python3-ipykernel python3-ipython python3-jedi python3-joblib 380s python3-jupyter-client python3-jupyter-core python3-kiwisolver 380s python3-legacy-cgi python3-lxml python3-lz4 python3-mako python3-matplotlib 380s python3-matplotlib-inline python3-mpmath python3-mrcfile python3-natsort 380s python3-nbformat python3-nest-asyncio python3-numexpr python3-numpy 380s python3-numpy-dev python3-nxmx python3-opengl python3-ordered-set 380s python3-pandas python3-pandas-lib python3-parso python3-pil 380s python3-pil.imagetk python3-pint python3-platformdirs python3-plotly 380s python3-pluggy python3-pooch python3-procrunner python3-prompt-toolkit 380s python3-psutil python3-pure-eval python3-pycbf python3-pyfai python3-pymol 380s python3-pyopencl python3-pyqt5 python3-pyqt5.qtopengl python3-pyqt5.qtsvg 380s python3-pyqt5.sip python3-pytest python3-pytest-mock python3-pytest-xdist 380s python3-pytools python3-pytz python3-qtconsole python3-qtpy python3-scipy 380s python3-silx python3-sklearn python3-sklearn-lib python3-stack-data 380s python3-sympy python3-tabulate python3-tenacity python3-threadpoolctl 380s python3-tk python3-tornado python3-tqdm python3-traitlets python3-typeshed 380s python3-tz python3-ufolib2 python3-unicodedata2 python3-wcwidth 380s python3-wxgtk4.0 python3-zmq python3.13-dev python3.13-tk 380s sphinx-rtd-theme-common tk8.6-blt2.5 unicode-data x11-common zlib1g-dev 380s 0 upgraded, 343 newly installed, 0 to remove and 0 not upgraded. 380s Need to get 350 MB of archives. 380s After this operation, 1749 MB of additional disk space will be used. 380s Get:1 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-lato all 2.015-1 [2781 kB] 380s Get:2 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy-dev amd64 1:2.2.4+ds-1 [147 kB] 380s Get:3 http://ftpmaster.internal/ubuntu questing/main amd64 libblas3 amd64 3.12.1-2 [359 kB] 380s Get:4 http://ftpmaster.internal/ubuntu questing/main amd64 libgfortran5 amd64 15-20250404-0ubuntu1 [926 kB] 381s Get:5 http://ftpmaster.internal/ubuntu questing/main amd64 liblapack3 amd64 3.12.1-2 [3179 kB] 381s Get:6 http://ftpmaster.internal/ubuntu questing/main amd64 python3-numpy amd64 1:2.2.4+ds-1 [5383 kB] 381s Get:7 http://ftpmaster.internal/ubuntu questing/main amd64 libgdk-pixbuf2.0-common all 2.42.12+dfsg-2 [8004 B] 381s Get:8 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg-turbo8 amd64 2.1.5-3ubuntu2 [179 kB] 381s Get:9 http://ftpmaster.internal/ubuntu questing/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 381s Get:10 http://ftpmaster.internal/ubuntu questing/main amd64 libdeflate0 amd64 1.23-2 [49.9 kB] 381s Get:11 http://ftpmaster.internal/ubuntu questing/main amd64 libjbig0 amd64 2.1-6.1ubuntu2 [29.7 kB] 381s Get:12 http://ftpmaster.internal/ubuntu questing/main amd64 liblerc4 amd64 4.0.0+ds-5ubuntu1 [271 kB] 381s Get:13 http://ftpmaster.internal/ubuntu questing/main amd64 libsharpyuv0 amd64 1.5.0-0.1 [25.9 kB] 381s Get:14 http://ftpmaster.internal/ubuntu questing/main amd64 libwebp7 amd64 1.5.0-0.1 [378 kB] 381s Get:15 http://ftpmaster.internal/ubuntu questing/main amd64 libtiff6 amd64 4.7.0-3ubuntu1 [204 kB] 381s Get:16 http://ftpmaster.internal/ubuntu questing/main amd64 libgdk-pixbuf-2.0-0 amd64 2.42.12+dfsg-2 [161 kB] 381s Get:17 http://ftpmaster.internal/ubuntu questing/main amd64 gtk-update-icon-cache amd64 4.18.5+ds-1 [53.2 kB] 381s Get:18 http://ftpmaster.internal/ubuntu questing/main amd64 hicolor-icon-theme all 0.18-2 [13.3 kB] 381s Get:19 http://ftpmaster.internal/ubuntu questing/main amd64 adwaita-icon-theme all 48.0-1 [578 kB] 381s Get:20 http://ftpmaster.internal/ubuntu questing/main amd64 at-spi2-common all 2.56.2-1 [9184 B] 381s Get:21 http://ftpmaster.internal/ubuntu questing/universe amd64 libaec0 amd64 1.1.3-1 [22.7 kB] 381s Get:22 http://ftpmaster.internal/ubuntu questing/universe amd64 libsz2 amd64 1.1.3-1 [5456 B] 381s Get:23 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-310 amd64 1.14.5+repack-3 [1519 kB] 381s Get:24 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-hl-310 amd64 1.14.5+repack-3 [62.6 kB] 381s Get:25 http://ftpmaster.internal/ubuntu questing/universe amd64 liblzf1 amd64 3.6-4 [7624 B] 381s Get:26 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py-serial amd64 3.13.0-1 [1230 kB] 381s Get:27 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-h5py all 3.13.0-1 [7978 B] 381s Get:28 http://ftpmaster.internal/ubuntu questing/main amd64 libgomp1 amd64 15-20250404-0ubuntu1 [151 kB] 381s Get:29 http://ftpmaster.internal/ubuntu questing/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-10 [7966 B] 381s Get:30 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.4 [179 kB] 381s Get:31 http://ftpmaster.internal/ubuntu questing/universe amd64 libpsm2-2 amd64 11.2.185-2.1 [193 kB] 381s Get:32 http://ftpmaster.internal/ubuntu questing/main amd64 librdmacm1t64 amd64 56.0-4ubuntu1 [71.5 kB] 381s Get:33 http://ftpmaster.internal/ubuntu questing/universe amd64 libfabric1 amd64 1.17.0-3.1 [789 kB] 381s Get:34 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc15 amd64 2.12.0-4 [175 kB] 381s Get:35 http://ftpmaster.internal/ubuntu questing/universe amd64 libmunge2 amd64 0.5.16-1 [16.5 kB] 381s Get:36 http://ftpmaster.internal/ubuntu questing/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 381s Get:37 http://ftpmaster.internal/ubuntu questing/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 381s Get:38 http://ftpmaster.internal/ubuntu questing/universe amd64 libze1 amd64 1.20.6-1 [515 kB] 381s Get:39 http://ftpmaster.internal/ubuntu questing/universe amd64 ocl-icd-libopencl1 amd64 2.3.3-1 [41.0 kB] 381s Get:40 http://ftpmaster.internal/ubuntu questing/universe amd64 libhwloc-plugins amd64 2.12.0-4 [21.6 kB] 381s Get:41 http://ftpmaster.internal/ubuntu questing/universe amd64 libpmix2t64 amd64 5.0.7-1 [712 kB] 381s Get:42 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvm17t64 amd64 1:17.0.6-21 [26.0 MB] 382s Get:43 http://ftpmaster.internal/ubuntu questing/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 383s Get:44 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 383s Get:45 http://ftpmaster.internal/ubuntu questing/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 383s Get:46 http://ftpmaster.internal/ubuntu questing/universe amd64 libamdhip64-5 amd64 5.7.1-5.1 [9695 kB] 383s Get:47 http://ftpmaster.internal/ubuntu questing/main amd64 libibumad3 amd64 56.0-4ubuntu1 [31.2 kB] 383s Get:48 http://ftpmaster.internal/ubuntu questing/main amd64 libibmad5 amd64 56.0-4ubuntu1 [43.9 kB] 383s Get:49 http://ftpmaster.internal/ubuntu questing/universe amd64 libucx0 amd64 1.18.1+ds-2 [1293 kB] 383s Get:50 http://ftpmaster.internal/ubuntu questing/universe amd64 libopenmpi40 amd64 5.0.7-1 [2526 kB] 383s Get:51 http://ftpmaster.internal/ubuntu questing/universe amd64 libhdf5-openmpi-310 amd64 1.14.5+repack-3 [1584 kB] 383s Get:52 http://ftpmaster.internal/ubuntu questing/universe amd64 bitshuffle amd64 0.5.2-1build2 [154 kB] 383s Get:53 http://ftpmaster.internal/ubuntu questing/main amd64 libtcl8.6 amd64 8.6.16+dfsg-1 [1086 kB] 383s Get:54 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 383s Get:55 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 384s Get:56 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig-config amd64 2.15.0-2.2ubuntu1 [37.8 kB] 384s Get:57 http://ftpmaster.internal/ubuntu questing/main amd64 libfontconfig1 amd64 2.15.0-2.2ubuntu1 [164 kB] 384s Get:58 http://ftpmaster.internal/ubuntu questing/main amd64 libxrender1 amd64 1:0.9.12-1 [19.8 kB] 384s Get:59 http://ftpmaster.internal/ubuntu questing/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 384s Get:60 http://ftpmaster.internal/ubuntu questing/main amd64 x11-common all 1:7.7+23ubuntu4 [21.8 kB] 384s Get:61 http://ftpmaster.internal/ubuntu questing/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 384s Get:62 http://ftpmaster.internal/ubuntu questing/main amd64 libtk8.6 amd64 8.6.16-1 [868 kB] 384s Get:63 http://ftpmaster.internal/ubuntu questing/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-8 [694 kB] 384s Get:64 http://ftpmaster.internal/ubuntu questing/main amd64 blt amd64 2.5.3+dfsg-8 [4824 B] 384s Get:65 http://ftpmaster.internal/ubuntu questing/main amd64 libitm1 amd64 15-20250404-0ubuntu1 [29.5 kB] 384s Get:66 http://ftpmaster.internal/ubuntu questing/main amd64 libasan8 amd64 15-20250404-0ubuntu1 [3076 kB] 384s Get:67 http://ftpmaster.internal/ubuntu questing/main amd64 liblsan0 amd64 15-20250404-0ubuntu1 [1362 kB] 384s Get:68 http://ftpmaster.internal/ubuntu questing/main amd64 libtsan2 amd64 15-20250404-0ubuntu1 [2760 kB] 384s Get:69 http://ftpmaster.internal/ubuntu questing/main amd64 libubsan1 amd64 15-20250404-0ubuntu1 [1211 kB] 384s Get:70 http://ftpmaster.internal/ubuntu questing/main amd64 libhwasan0 amd64 15-20250404-0ubuntu1 [1687 kB] 384s Get:71 http://ftpmaster.internal/ubuntu questing/main amd64 libquadmath0 amd64 15-20250404-0ubuntu1 [153 kB] 384s Get:72 http://ftpmaster.internal/ubuntu questing/main amd64 libgcc-14-dev amd64 14.2.0-19ubuntu2 [2815 kB] 384s Get:73 http://ftpmaster.internal/ubuntu questing/main amd64 libstdc++-14-dev amd64 14.2.0-19ubuntu2 [2510 kB] 384s Get:74 http://ftpmaster.internal/ubuntu questing/main amd64 libgc1 amd64 1:8.2.8-1 [102 kB] 384s Get:75 http://ftpmaster.internal/ubuntu questing/universe amd64 libobjc4 amd64 15-20250404-0ubuntu1 [47.8 kB] 384s Get:76 http://ftpmaster.internal/ubuntu questing/universe amd64 libobjc-14-dev amd64 14.2.0-19ubuntu2 [195 kB] 384s Get:77 http://ftpmaster.internal/ubuntu questing/universe amd64 libclang-common-18-dev amd64 1:18.1.8-17 [739 kB] 384s Get:78 http://ftpmaster.internal/ubuntu questing/universe amd64 llvm-18-linker-tools amd64 1:18.1.8-17 [1311 kB] 385s Get:79 http://ftpmaster.internal/ubuntu questing/universe amd64 libclang1-18 amd64 1:18.1.8-17 [7755 kB] 385s Get:80 http://ftpmaster.internal/ubuntu questing/universe amd64 clang-18 amd64 1:18.1.8-17 [80.1 kB] 385s Get:81 http://ftpmaster.internal/ubuntu questing/main amd64 libdconf1 amd64 0.40.0-5 [39.8 kB] 385s Get:82 http://ftpmaster.internal/ubuntu questing/main amd64 dconf-service amd64 0.40.0-5 [28.4 kB] 385s Get:83 http://ftpmaster.internal/ubuntu questing/main amd64 dconf-gsettings-backend amd64 0.40.0-5 [22.7 kB] 385s Get:84 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 385s Get:85 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 385s Get:86 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 385s Get:87 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-katex all 0.16.10+~cs6.1.0-2 [775 kB] 385s Get:88 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-katex all 0.16.10+~cs6.1.0-2 [220 kB] 385s Get:89 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 385s Get:90 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 385s Get:91 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pytz all 2025.1-3 [162 kB] 385s Get:92 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tz all 2025.1-3 [1866 B] 385s Get:93 http://ftpmaster.internal/ubuntu questing/main amd64 python3-decorator all 5.2.1-2 [28.1 kB] 385s Get:94 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fastjsonschema all 2.21.1-1 [20.4 kB] 385s Get:95 http://ftpmaster.internal/ubuntu questing/main amd64 python3-platformdirs all 4.3.7-1 [16.9 kB] 385s Get:96 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-traitlets all 5.14.3+really5.14.3-1 [71.5 kB] 385s Get:97 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jupyter-core all 5.7.2-5 [28.1 kB] 385s Get:98 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nbformat all 5.9.1-1 [41.2 kB] 385s Get:99 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tenacity all 9.0.0-0ubuntu1 [17.0 kB] 386s Get:100 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-plotly all 5.20.0+dfsg-1 [2766 kB] 386s Get:101 http://ftpmaster.internal/ubuntu questing/universe amd64 libann-cctbx0 amd64 1.1.2+doc-9build1 [32.7 kB] 386s Get:102 http://ftpmaster.internal/ubuntu questing/universe amd64 libann-cctbx-dev amd64 1.1.2+doc-9build1 [45.1 kB] 386s Get:103 http://ftpmaster.internal/ubuntu questing/main amd64 libboost1.83-dev amd64 1.83.0-4.2ubuntu1 [10.7 MB] 387s Get:104 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-python1.83.0 amd64 1.83.0-4.2ubuntu1 [314 kB] 387s Get:105 http://ftpmaster.internal/ubuntu questing/main amd64 libexpat1-dev amd64 2.7.1-1 [148 kB] 387s Get:106 http://ftpmaster.internal/ubuntu questing/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1ubuntu1 [895 kB] 387s Get:107 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3.13-dev amd64 3.13.3-1 [5507 kB] 387s Get:108 http://ftpmaster.internal/ubuntu questing/main amd64 libpython3-dev amd64 3.13.3-1 [10.8 kB] 387s Get:109 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-dev amd64 3.13.3-1 [508 kB] 387s Get:110 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [118 kB] 387s Get:111 http://ftpmaster.internal/ubuntu questing/main amd64 libjs-sphinxdoc all 8.1.3-5 [31.0 kB] 387s Get:112 http://ftpmaster.internal/ubuntu questing/main amd64 python3-dev amd64 3.13.3-1 [26.7 kB] 387s Get:113 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-python1.83-dev amd64 1.83.0-4.2ubuntu1 [338 kB] 387s Get:114 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-python-dev amd64 1.83.0.2ubuntu1 [4516 B] 387s Get:115 http://ftpmaster.internal/ubuntu questing/universe amd64 libccp4-data all 8.0.0-4 [65.2 kB] 387s Get:116 http://ftpmaster.internal/ubuntu questing/universe amd64 libccp4c0t64 amd64 8.0.0-4 [104 kB] 387s Get:117 http://ftpmaster.internal/ubuntu questing/universe amd64 libmmdb2-0 amd64 2.0.22-1 [363 kB] 387s Get:118 http://ftpmaster.internal/ubuntu questing/universe amd64 libccp4f0t64 amd64 8.0.0-4 [228 kB] 387s Get:119 http://ftpmaster.internal/ubuntu questing/universe amd64 libccp4-dev amd64 8.0.0-4 [42.4 kB] 387s Get:120 http://ftpmaster.internal/ubuntu questing/universe amd64 libcbf1t64 amd64 0.9.7+dfsg1-5build1 [361 kB] 387s Get:121 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libcctbx0 amd64 2024.10+ds2+~3.22.1+ds1-4build2 [2077 kB] 387s Get:122 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 libcctbx-dev amd64 2024.10+ds2+~3.22.1+ds1-4build2 [1192 kB] 387s Get:123 http://ftpmaster.internal/ubuntu questing/main amd64 python3-legacy-cgi all 2.6.3-1 [16.8 kB] 387s Get:124 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pycbf amd64 0.9.7+dfsg1-5build1 [166 kB] 387s Get:125 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-hdf5plugin all 5.1.0-1 [23.3 kB] 387s Get:126 http://ftpmaster.internal/ubuntu questing/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 387s Get:127 http://ftpmaster.internal/ubuntu questing/universe amd64 fonts-lyx all 2.4.3-1 [171 kB] 387s Get:128 http://ftpmaster.internal/ubuntu questing/universe amd64 python-matplotlib-data all 3.8.3-7build1 [2934 kB] 387s Get:129 http://ftpmaster.internal/ubuntu questing/main amd64 libimagequant0 amd64 2.18.0-1build1 [36.3 kB] 387s Get:130 http://ftpmaster.internal/ubuntu questing/main amd64 liblcms2-2 amd64 2.16-2 [212 kB] 387s Get:131 http://ftpmaster.internal/ubuntu questing/main amd64 libopenjp2-7 amd64 2.5.3-2 [218 kB] 387s Get:132 http://ftpmaster.internal/ubuntu questing/main amd64 libgraphite2-3 amd64 1.3.14-2ubuntu1 [73.1 kB] 387s Get:133 http://ftpmaster.internal/ubuntu questing/main amd64 libharfbuzz0b amd64 10.2.0-1 [543 kB] 387s Get:134 http://ftpmaster.internal/ubuntu questing/main amd64 libraqm0 amd64 0.10.2-1 [17.2 kB] 387s Get:135 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpdemux2 amd64 1.5.0-0.1 [13.0 kB] 387s Get:136 http://ftpmaster.internal/ubuntu questing/main amd64 libwebpmux3 amd64 1.5.0-0.1 [27.6 kB] 387s Get:137 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pil amd64 11.1.0-5build1 [583 kB] 387s Get:138 http://ftpmaster.internal/ubuntu questing/main amd64 python3.13-tk amd64 3.13.3-1 [107 kB] 387s Get:139 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tk amd64 3.13.3-1 [9856 B] 388s Get:140 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pil.imagetk amd64 11.1.0-5build1 [9828 B] 388s Get:141 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-contourpy amd64 1.3.1-1build1 [218 kB] 388s Get:142 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-cycler all 0.12.1-1 [9716 B] 388s Get:143 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-brotli amd64 1.1.0-2build4 [367 kB] 388s Get:144 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fs all 2.4.16-7 [90.8 kB] 388s Get:145 http://ftpmaster.internal/ubuntu questing/main amd64 libxslt1.1 amd64 1.1.39-0exp1ubuntu4 [176 kB] 388s Get:146 http://ftpmaster.internal/ubuntu questing/main amd64 python3-lxml amd64 5.4.0-1 [1342 kB] 388s Get:147 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-lz4 amd64 4.4.0+dfsg-2 [26.6 kB] 388s Get:148 http://ftpmaster.internal/ubuntu questing/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1build1 [29.9 kB] 388s Get:149 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-scipy amd64 1.14.1-4ubuntu2 [18.7 MB] 388s Get:150 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mpmath all 1.3.0-1 [425 kB] 388s Get:151 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sympy all 1.13.3-5 [4229 kB] 388s Get:152 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ufolib2 all 0.17.1+dfsg1-1 [33.5 kB] 388s Get:153 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1build3 [360 kB] 388s Get:154 http://ftpmaster.internal/ubuntu questing/main amd64 python3-all amd64 3.13.3-1 [882 B] 388s Get:155 http://ftpmaster.internal/ubuntu questing/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 389s Get:156 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fonttools amd64 4.55.3-2build1 [1536 kB] 389s Get:157 http://ftpmaster.internal/ubuntu questing/main amd64 python3-importlib-resources all 6.5.2-1 [24.5 kB] 389s Get:158 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-kiwisolver amd64 1.4.7-3build1 [55.6 kB] 389s Get:159 http://ftpmaster.internal/ubuntu questing/universe amd64 libqhull-r8.0 amd64 2020.2-6build1 [193 kB] 389s Get:160 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-matplotlib amd64 3.8.3-7build1 [17.4 MB] 389s Get:161 http://ftpmaster.internal/ubuntu questing/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 390s Get:162 http://ftpmaster.internal/ubuntu questing/main amd64 sphinx-rtd-theme-common all 3.0.2+dfsg-2 [1014 kB] 390s Get:163 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-mrcfile all 1.5.4-2 [116 kB] 390s Get:164 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-natsort all 8.0.2-2 [33.8 kB] 390s Get:165 http://ftpmaster.internal/ubuntu questing/main amd64 python3-flexcache all 0.3-2 [13.4 kB] 390s Get:166 http://ftpmaster.internal/ubuntu questing/main amd64 python3-flexparser all 0.4-1 [43.8 kB] 390s Get:167 http://ftpmaster.internal/ubuntu questing/main amd64 python3-pint all 0.24.4-1 [203 kB] 390s Get:168 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nxmx all 0.0.4-1 [16.4 kB] 390s Get:169 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ordered-set all 4.1.0-1 [9778 B] 390s Get:170 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-procrunner all 2.3.3-2 [12.0 kB] 390s Get:171 http://ftpmaster.internal/ubuntu questing/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 390s Get:172 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-server0 amd64 1.23.1-3 [37.2 kB] 390s Get:173 http://ftpmaster.internal/ubuntu questing/main amd64 libdrm-intel1 amd64 2.4.124-2 [68.9 kB] 390s Get:174 http://ftpmaster.internal/ubuntu questing/main amd64 libx11-xcb1 amd64 2:1.8.12-1 [7968 B] 390s Get:175 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-dri3-0 amd64 1.17.0-2 [7508 B] 390s Get:176 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-present0 amd64 1.17.0-2 [6064 B] 390s Get:177 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-randr0 amd64 1.17.0-2 [17.9 kB] 390s Get:178 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-sync1 amd64 1.17.0-2 [9312 B] 390s Get:179 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xfixes0 amd64 1.17.0-2 [10.2 kB] 390s Get:180 http://ftpmaster.internal/ubuntu questing/main amd64 libxshmfence1 amd64 1.3.3-1 [5262 B] 390s Get:181 http://ftpmaster.internal/ubuntu questing/main amd64 mesa-libgallium amd64 25.0.3-1ubuntu2 [12.1 MB] 390s Get:182 http://ftpmaster.internal/ubuntu questing/main amd64 libgbm1 amd64 25.0.3-1ubuntu2 [33.4 kB] 390s Get:183 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-client0 amd64 1.23.1-3 [29.7 kB] 390s Get:184 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shm0 amd64 1.17.0-2 [5758 B] 390s Get:185 http://ftpmaster.internal/ubuntu questing/main amd64 libegl-mesa0 amd64 25.0.3-1ubuntu2 [136 kB] 390s Get:186 http://ftpmaster.internal/ubuntu questing/main amd64 libegl1 amd64 1.7.0-1build1 [28.7 kB] 390s Get:187 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-glx0 amd64 1.17.0-2 [24.8 kB] 390s Get:188 http://ftpmaster.internal/ubuntu questing/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 390s Get:189 http://ftpmaster.internal/ubuntu questing/main amd64 libvulkan1 amd64 1.4.309.0-1 [145 kB] 390s Get:190 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1-mesa-dri amd64 25.0.3-1ubuntu2 [35.7 kB] 390s Get:191 http://ftpmaster.internal/ubuntu questing/main amd64 libglx-mesa0 amd64 25.0.3-1ubuntu2 [146 kB] 390s Get:192 http://ftpmaster.internal/ubuntu questing/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 390s Get:193 http://ftpmaster.internal/ubuntu questing/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 390s Get:194 http://ftpmaster.internal/ubuntu questing/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 390s Get:195 http://ftpmaster.internal/ubuntu questing/main amd64 libglu1-mesa amd64 9.0.2-1.1build1 [152 kB] 390s Get:196 http://ftpmaster.internal/ubuntu questing/main amd64 libxi6 amd64 2:1.8.2-1 [32.4 kB] 390s Get:197 http://ftpmaster.internal/ubuntu questing/universe amd64 libglut3.12 amd64 3.4.0-4 [111 kB] 390s Get:198 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-opengl all 3.1.9+dfsg-1syncable1 [631 kB] 390s Get:199 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5.sip amd64 12.17.0-1build1 [76.5 kB] 390s Get:200 http://ftpmaster.internal/ubuntu questing/universe amd64 libdouble-conversion3 amd64 3.3.1-1 [41.7 kB] 390s Get:201 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-16-0 amd64 10.45-1 [268 kB] 390s Get:202 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5core5t64 amd64 5.15.15+dfsg-4ubuntu1 [2038 kB] 391s Get:203 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5dbus5t64 amd64 5.15.15+dfsg-4ubuntu1 [221 kB] 391s Get:204 http://ftpmaster.internal/ubuntu questing/main amd64 fontconfig amd64 2.15.0-2.2ubuntu1 [180 kB] 391s Get:205 http://ftpmaster.internal/ubuntu questing/main amd64 libice6 amd64 2:1.1.1-1 [44.1 kB] 391s Get:206 http://ftpmaster.internal/ubuntu questing/main amd64 libmtdev1t64 amd64 1.1.7-1 [16.3 kB] 391s Get:207 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom-common all 2.14.0-1 [103 kB] 391s Get:208 http://ftpmaster.internal/ubuntu questing/main amd64 libwacom9 amd64 2.14.0-1 [27.3 kB] 391s Get:209 http://ftpmaster.internal/ubuntu questing/main amd64 libinput-bin amd64 1.28.1-1 [23.6 kB] 391s Get:210 http://ftpmaster.internal/ubuntu questing/main amd64 libinput10 amd64 1.28.1-1 [144 kB] 391s Get:211 http://ftpmaster.internal/ubuntu questing/universe amd64 libmd4c0 amd64 0.5.2-2 [50.1 kB] 391s Get:212 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5network5t64 amd64 5.15.15+dfsg-4ubuntu1 [725 kB] 391s Get:213 http://ftpmaster.internal/ubuntu questing/main amd64 libsm6 amd64 2:1.2.6-1 [16.4 kB] 391s Get:214 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-icccm4 amd64 0.4.2-1 [11.1 kB] 391s Get:215 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-util1 amd64 0.4.1-1 [11.2 kB] 391s Get:216 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-image0 amd64 0.4.0-2build1 [10.8 kB] 391s Get:217 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-keysyms1 amd64 0.4.1-1 [8738 B] 391s Get:218 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render0 amd64 1.17.0-2 [16.2 kB] 391s Get:219 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-render-util0 amd64 0.3.10-1 [10.8 kB] 391s Get:220 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-shape0 amd64 1.17.0-2 [6092 B] 391s Get:221 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinerama0 amd64 1.17.0-2 [5412 B] 391s Get:222 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xinput0 amd64 1.17.0-2 [33.2 kB] 391s Get:223 http://ftpmaster.internal/ubuntu questing/main amd64 libxcb-xkb1 amd64 1.17.0-2 [32.3 kB] 391s Get:224 http://ftpmaster.internal/ubuntu questing/main amd64 libxkbcommon-x11-0 amd64 1.7.0-2 [15.2 kB] 391s Get:225 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5gui5t64 amd64 5.15.15+dfsg-4ubuntu1 [3791 kB] 391s Get:226 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5widgets5t64 amd64 5.15.15+dfsg-4ubuntu1 [2560 kB] 391s Get:227 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5xml5t64 amd64 5.15.15+dfsg-4ubuntu1 [124 kB] 391s Get:228 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5designer5 amd64 5.15.15-6build1 [2827 kB] 392s Get:229 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5sql5t64 amd64 5.15.15+dfsg-4ubuntu1 [122 kB] 392s Get:230 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5help5 amd64 5.15.15-6build1 [162 kB] 392s Get:231 http://ftpmaster.internal/ubuntu questing/main amd64 libavahi-common-data amd64 0.8-16ubuntu2 [31.0 kB] 392s Get:232 http://ftpmaster.internal/ubuntu questing/main amd64 libavahi-common3 amd64 0.8-16ubuntu2 [23.6 kB] 392s Get:233 http://ftpmaster.internal/ubuntu questing/main amd64 libavahi-client3 amd64 0.8-16ubuntu2 [27.5 kB] 392s Get:234 http://ftpmaster.internal/ubuntu questing/main amd64 libcups2t64 amd64 2.4.12-0ubuntu1 [292 kB] 392s Get:235 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5printsupport5t64 amd64 5.15.15+dfsg-4ubuntu1 [208 kB] 392s Get:236 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5test5t64 amd64 5.15.15+dfsg-4ubuntu1 [149 kB] 392s Get:237 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5 amd64 5.15.11+dfsg-2 [2725 kB] 392s Get:238 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5opengl5t64 amd64 5.15.15+dfsg-4ubuntu1 [150 kB] 392s Get:239 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5.qtopengl amd64 5.15.11+dfsg-2 [128 kB] 392s Get:240 http://ftpmaster.internal/ubuntu questing/universe amd64 libglew2.2 amd64 2.2.0-4build1 [187 kB] 392s Get:241 http://ftpmaster.internal/ubuntu questing/universe amd64 libnetcdf22 amd64 1:4.9.3-1 [574 kB] 392s Get:242 http://ftpmaster.internal/ubuntu questing/universe amd64 pymol-data all 3.1.0+dfsg-1 [1394 kB] 392s Get:243 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pymol amd64 3.1.0+dfsg-1 [4171 kB] 392s Get:244 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-tqdm all 4.67.1-3 [91.6 kB] 392s Get:245 http://ftpmaster.internal/ubuntu questing/main amd64 libpcre2-32-0 amd64 10.45-1 [251 kB] 392s Get:246 http://ftpmaster.internal/ubuntu questing/universe amd64 libwxbase3.2-1t64 amd64 3.2.6+dfsg-2ubuntu1 [980 kB] 392s Get:247 http://ftpmaster.internal/ubuntu questing/main amd64 libatk1.0-0t64 amd64 2.56.2-1 [55.5 kB] 392s Get:248 http://ftpmaster.internal/ubuntu questing/main amd64 libatspi2.0-0t64 amd64 2.56.2-1 [84.2 kB] 392s Get:249 http://ftpmaster.internal/ubuntu questing/main amd64 libatk-bridge2.0-0t64 amd64 2.56.2-1 [66.3 kB] 392s Get:250 http://ftpmaster.internal/ubuntu questing/main amd64 libpixman-1-0 amd64 0.44.0-3 [427 kB] 392s Get:251 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo2 amd64 1.18.4-1 [662 kB] 392s Get:252 http://ftpmaster.internal/ubuntu questing/main amd64 libcairo-gobject2 amd64 1.18.4-1 [127 kB] 392s Get:253 http://ftpmaster.internal/ubuntu questing/main amd64 libcolord2 amd64 1.4.7-3 [155 kB] 392s Get:254 http://ftpmaster.internal/ubuntu questing/main amd64 libepoxy0 amd64 1.5.10-2 [218 kB] 392s Get:255 http://ftpmaster.internal/ubuntu questing/main amd64 libthai-data all 0.1.29-2build1 [158 kB] 392s Get:256 http://ftpmaster.internal/ubuntu questing/main amd64 libdatrie1 amd64 0.2.13-3build1 [19.0 kB] 392s Get:257 http://ftpmaster.internal/ubuntu questing/main amd64 libthai0 amd64 0.1.29-2build1 [18.9 kB] 392s Get:258 http://ftpmaster.internal/ubuntu questing/main amd64 libpango-1.0-0 amd64 1.56.3-1 [256 kB] 392s Get:259 http://ftpmaster.internal/ubuntu questing/main amd64 libpangoft2-1.0-0 amd64 1.56.3-1 [52.9 kB] 392s Get:260 http://ftpmaster.internal/ubuntu questing/main amd64 libpangocairo-1.0-0 amd64 1.56.3-1 [29.1 kB] 392s Get:261 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-cursor0 amd64 1.23.1-3 [10.9 kB] 392s Get:262 http://ftpmaster.internal/ubuntu questing/main amd64 libwayland-egl1 amd64 1.23.1-3 [6168 B] 392s Get:263 http://ftpmaster.internal/ubuntu questing/main amd64 libxcomposite1 amd64 1:0.4.6-1 [6642 B] 392s Get:264 http://ftpmaster.internal/ubuntu questing/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 392s Get:265 http://ftpmaster.internal/ubuntu questing/main amd64 libxcursor1 amd64 1:1.2.3-1 [23.1 kB] 392s Get:266 http://ftpmaster.internal/ubuntu questing/main amd64 libxdamage1 amd64 1:1.1.6-1build1 [6150 B] 392s Get:267 http://ftpmaster.internal/ubuntu questing/main amd64 libxinerama1 amd64 2:1.1.4-3build1 [6396 B] 392s Get:268 http://ftpmaster.internal/ubuntu questing/main amd64 libxrandr2 amd64 2:1.5.4-1 [19.6 kB] 392s Get:269 http://ftpmaster.internal/ubuntu questing/main amd64 libgtk-3-common all 3.24.49-2ubuntu1 [1424 kB] 392s Get:270 http://ftpmaster.internal/ubuntu questing/main amd64 libgtk-3-0t64 amd64 3.24.49-2ubuntu1 [3172 kB] 392s Get:271 http://ftpmaster.internal/ubuntu questing/main amd64 libnotify4 amd64 0.8.6-1 [26.9 kB] 392s Get:272 http://ftpmaster.internal/ubuntu questing/main amd64 libxtst6 amd64 2:1.2.5-1 [13.0 kB] 392s Get:273 http://ftpmaster.internal/ubuntu questing/universe amd64 libwxgtk3.2-1t64 amd64 3.2.6+dfsg-2ubuntu1 [4967 kB] 393s Get:274 http://ftpmaster.internal/ubuntu questing/universe amd64 libwxgtk-gl3.2-1t64 amd64 3.2.6+dfsg-2ubuntu1 [53.9 kB] 393s Get:275 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-wxgtk4.0 amd64 4.2.2+dfsg-3build1 [7838 kB] 393s Get:276 http://ftpmaster.internal/ubuntu questing/universe amd64 libantlr3c-3.4-0 amd64 3.4+dfsg-4build2 [44.9 kB] 393s Get:277 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-numpy1.83.0 amd64 1.83.0-4.2ubuntu1 [243 kB] 393s Get:278 http://ftpmaster.internal/ubuntu questing/main amd64 libboost-thread1.83.0 amd64 1.83.0-4.2ubuntu1 [278 kB] 393s Get:279 http://ftpmaster.internal/ubuntu questing/universe amd64 libboost-timer1.83.0 amd64 1.83.0-4.2ubuntu1 [241 kB] 393s Get:280 http://ftpmaster.internal/ubuntu questing/universe amd64 libssm2 amd64 1.4.0-2build1 [87.7 kB] 393s Get:281 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-cctbx amd64 2024.10+ds2+~3.22.1+ds1-4build2 [29.0 MB] 394s Get:282 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas-lib amd64 2.2.3+dfsg-8build1 [5332 kB] 394s Get:283 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pandas all 2.2.3+dfsg-8build1 [3112 kB] 394s Get:284 http://ftpmaster.internal/ubuntu questing/main amd64 python3-psutil amd64 5.9.8-2build3 [196 kB] 394s Get:285 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-fabio amd64 2024.9.0-7 [669 kB] 394s Get:286 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-numexpr amd64 2.10.2-1build2 [131 kB] 394s Get:287 http://ftpmaster.internal/ubuntu questing/main amd64 python3-mako all 1.3.9-1 [63.5 kB] 394s Get:288 http://ftpmaster.internal/ubuntu questing/universe amd64 libpocl2-common all 6.0-6 [83.1 kB] 394s Get:289 http://ftpmaster.internal/ubuntu questing/universe amd64 libllvmspirvlib18.1 amd64 18.1.11-1 [856 kB] 394s Get:290 http://ftpmaster.internal/ubuntu questing/universe amd64 llvm-spirv-18 amd64 18.1.11-1 [488 kB] 394s Get:291 http://ftpmaster.internal/ubuntu questing/universe amd64 libpocl2t64 amd64 6.0-6 [16.4 MB] 395s Get:292 http://ftpmaster.internal/ubuntu questing/universe amd64 pocl-opencl-icd amd64 6.0-6 [7166 B] 395s Get:293 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytools all 2025.1.2-1 [69.9 kB] 395s Get:294 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyopencl amd64 2024.1-3build1 [604 kB] 395s Get:295 http://ftpmaster.internal/ubuntu questing/universe amd64 libqt5svg5 amd64 5.15.15-2 [153 kB] 395s Get:296 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyqt5.qtsvg amd64 5.15.11+dfsg-2 [30.1 kB] 395s Get:297 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-comm all 0.2.1-1 [7016 B] 395s Get:298 http://ftpmaster.internal/ubuntu questing/main amd64 libbabeltrace1 amd64 1.5.11-4build2 [186 kB] 395s Get:299 http://ftpmaster.internal/ubuntu questing/main amd64 libipt2 amd64 2.1.2-1 [58.9 kB] 395s Get:300 http://ftpmaster.internal/ubuntu questing/main amd64 libsource-highlight-common all 3.1.9-4.3build1 [64.2 kB] 395s Get:301 http://ftpmaster.internal/ubuntu questing/main amd64 libsource-highlight4t64 amd64 3.1.9-4.3build1 [258 kB] 395s Get:302 http://ftpmaster.internal/ubuntu questing/main amd64 gdb amd64 16.2-8ubuntu1 [4488 kB] 395s Get:303 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-coverage amd64 7.6.0+dfsg1-2build1 [153 kB] 395s Get:304 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-debugpy amd64 1.8.8+ds-2ubuntu1 [1145 kB] 396s Get:305 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-parso all 0.8.4-1 [67.6 kB] 396s Get:306 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-typeshed all 0.0~git20241223.ea91db2-1 [1548 kB] 396s Get:307 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jedi all 0.19.1+ds1-1 [693 kB] 396s Get:308 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-matplotlib-inline all 0.1.7-1 [9186 B] 396s Get:309 http://ftpmaster.internal/ubuntu questing/main amd64 python3-wcwidth all 0.2.13+dfsg1-1 [26.3 kB] 396s Get:310 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-prompt-toolkit all 3.0.51-2 [257 kB] 396s Get:311 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-asttokens all 3.0.0-1 [20.4 kB] 396s Get:312 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-executing all 2.2.0-0.1 [25.0 kB] 396s Get:313 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pure-eval all 0.2.3-1 [11.4 kB] 396s Get:314 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-stack-data all 0.6.3-1 [22.0 kB] 396s Get:315 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ipython all 8.35.0-1 [575 kB] 396s Get:316 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tornado amd64 6.4.2-1 [299 kB] 396s Get:317 http://ftpmaster.internal/ubuntu questing/universe amd64 libnorm1t64 amd64 1.5.9+dfsg-3.1build1 [154 kB] 396s Get:318 http://ftpmaster.internal/ubuntu questing/universe amd64 libpgm-5.3-0t64 amd64 5.3.128~dfsg-2.1build1 [167 kB] 396s Get:319 http://ftpmaster.internal/ubuntu questing/main amd64 libsodium23 amd64 1.0.18-1build3 [161 kB] 396s Get:320 http://ftpmaster.internal/ubuntu questing/universe amd64 libzmq5 amd64 4.3.5-1build2 [260 kB] 396s Get:321 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-zmq amd64 26.2.1-1build1 [191 kB] 396s Get:322 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-jupyter-client all 8.6.3-2 [78.5 kB] 396s Get:323 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-nest-asyncio all 1.5.4-1 [6256 B] 396s Get:324 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-ipykernel all 6.29.5-2 [82.7 kB] 396s Get:325 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-qtpy all 2.4.3-1 [57.5 kB] 396s Get:326 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-qtconsole all 5.6.1-4 [84.7 kB] 396s Get:327 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pooch all 1.8.2-1 [49.9 kB] 396s Get:328 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-silx amd64 2.2.1+dfsg-3 [2616 kB] 396s Get:329 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pyfai amd64 2025.03-1 [3244 kB] 397s Get:330 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-joblib all 1.4.2-3 [205 kB] 397s Get:331 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 397s Get:332 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sklearn-lib amd64 1.4.2+dfsg-8 [4359 kB] 397s Get:333 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-sklearn all 1.4.2+dfsg-8 [2258 kB] 397s Get:334 http://ftpmaster.internal/ubuntu questing/main amd64 python3-tabulate all 0.9.0-1 [45.3 kB] 397s Get:335 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 python3-dials amd64 3.22.1+dfsg3-1build1 [4158 kB] 397s Get:336 http://ftpmaster.internal/ubuntu questing-proposed/universe amd64 dials amd64 3.22.1+dfsg3-1build1 [7972 B] 397s Get:337 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-iniconfig all 1.1.1-2 [6024 B] 397s Get:338 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pluggy all 1.5.0-1 [21.0 kB] 397s Get:339 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest all 8.3.5-1 [252 kB] 397s Get:340 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-dials-data all 2.4.0-2 [110 kB] 397s Get:341 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-execnet all 2.1.1-1 [33.4 kB] 397s Get:342 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest-mock all 3.14.0-2 [11.7 kB] 397s Get:343 http://ftpmaster.internal/ubuntu questing/universe amd64 python3-pytest-xdist all 3.6.1-1 [33.8 kB] 398s Fetched 350 MB in 17s (20.2 MB/s) 398s Selecting previously unselected package fonts-lato. 398s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80527 files and directories currently installed.) 398s Preparing to unpack .../000-fonts-lato_2.015-1_all.deb ... 398s Unpacking fonts-lato (2.015-1) ... 398s Selecting previously unselected package python3-numpy-dev:amd64. 398s Preparing to unpack .../001-python3-numpy-dev_1%3a2.2.4+ds-1_amd64.deb ... 398s Unpacking python3-numpy-dev:amd64 (1:2.2.4+ds-1) ... 398s Selecting previously unselected package libblas3:amd64. 398s Preparing to unpack .../002-libblas3_3.12.1-2_amd64.deb ... 398s Unpacking libblas3:amd64 (3.12.1-2) ... 398s Selecting previously unselected package libgfortran5:amd64. 398s Preparing to unpack .../003-libgfortran5_15-20250404-0ubuntu1_amd64.deb ... 398s Unpacking libgfortran5:amd64 (15-20250404-0ubuntu1) ... 398s Selecting previously unselected package liblapack3:amd64. 398s Preparing to unpack .../004-liblapack3_3.12.1-2_amd64.deb ... 398s Unpacking liblapack3:amd64 (3.12.1-2) ... 398s Selecting previously unselected package python3-numpy. 398s Preparing to unpack .../005-python3-numpy_1%3a2.2.4+ds-1_amd64.deb ... 398s Unpacking python3-numpy (1:2.2.4+ds-1) ... 398s Selecting previously unselected package libgdk-pixbuf2.0-common. 398s Preparing to unpack .../006-libgdk-pixbuf2.0-common_2.42.12+dfsg-2_all.deb ... 398s Unpacking libgdk-pixbuf2.0-common (2.42.12+dfsg-2) ... 398s Selecting previously unselected package libjpeg-turbo8:amd64. 398s Preparing to unpack .../007-libjpeg-turbo8_2.1.5-3ubuntu2_amd64.deb ... 398s Unpacking libjpeg-turbo8:amd64 (2.1.5-3ubuntu2) ... 398s Selecting previously unselected package libjpeg8:amd64. 398s Preparing to unpack .../008-libjpeg8_8c-2ubuntu11_amd64.deb ... 398s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 398s Selecting previously unselected package libdeflate0:amd64. 398s Preparing to unpack .../009-libdeflate0_1.23-2_amd64.deb ... 398s Unpacking libdeflate0:amd64 (1.23-2) ... 398s Selecting previously unselected package libjbig0:amd64. 398s Preparing to unpack .../010-libjbig0_2.1-6.1ubuntu2_amd64.deb ... 399s Unpacking libjbig0:amd64 (2.1-6.1ubuntu2) ... 399s Selecting previously unselected package liblerc4:amd64. 399s Preparing to unpack .../011-liblerc4_4.0.0+ds-5ubuntu1_amd64.deb ... 399s Unpacking liblerc4:amd64 (4.0.0+ds-5ubuntu1) ... 399s Selecting previously unselected package libsharpyuv0:amd64. 399s Preparing to unpack .../012-libsharpyuv0_1.5.0-0.1_amd64.deb ... 399s Unpacking libsharpyuv0:amd64 (1.5.0-0.1) ... 399s Selecting previously unselected package libwebp7:amd64. 399s Preparing to unpack .../013-libwebp7_1.5.0-0.1_amd64.deb ... 399s Unpacking libwebp7:amd64 (1.5.0-0.1) ... 399s Selecting previously unselected package libtiff6:amd64. 399s Preparing to unpack .../014-libtiff6_4.7.0-3ubuntu1_amd64.deb ... 399s Unpacking libtiff6:amd64 (4.7.0-3ubuntu1) ... 399s Selecting previously unselected package libgdk-pixbuf-2.0-0:amd64. 399s Preparing to unpack .../015-libgdk-pixbuf-2.0-0_2.42.12+dfsg-2_amd64.deb ... 399s Unpacking libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... 399s Selecting previously unselected package gtk-update-icon-cache. 399s Preparing to unpack .../016-gtk-update-icon-cache_4.18.5+ds-1_amd64.deb ... 399s No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. 399s No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. 399s Unpacking gtk-update-icon-cache (4.18.5+ds-1) ... 399s Selecting previously unselected package hicolor-icon-theme. 399s Preparing to unpack .../017-hicolor-icon-theme_0.18-2_all.deb ... 399s Unpacking hicolor-icon-theme (0.18-2) ... 399s Selecting previously unselected package adwaita-icon-theme. 399s Preparing to unpack .../018-adwaita-icon-theme_48.0-1_all.deb ... 399s Unpacking adwaita-icon-theme (48.0-1) ... 399s Selecting previously unselected package at-spi2-common. 399s Preparing to unpack .../019-at-spi2-common_2.56.2-1_all.deb ... 399s Unpacking at-spi2-common (2.56.2-1) ... 399s Selecting previously unselected package libaec0:amd64. 399s Preparing to unpack .../020-libaec0_1.1.3-1_amd64.deb ... 399s Unpacking libaec0:amd64 (1.1.3-1) ... 399s Selecting previously unselected package libsz2:amd64. 399s Preparing to unpack .../021-libsz2_1.1.3-1_amd64.deb ... 399s Unpacking libsz2:amd64 (1.1.3-1) ... 399s Selecting previously unselected package libhdf5-310:amd64. 399s Preparing to unpack .../022-libhdf5-310_1.14.5+repack-3_amd64.deb ... 399s Unpacking libhdf5-310:amd64 (1.14.5+repack-3) ... 399s Selecting previously unselected package libhdf5-hl-310:amd64. 399s Preparing to unpack .../023-libhdf5-hl-310_1.14.5+repack-3_amd64.deb ... 399s Unpacking libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 399s Selecting previously unselected package liblzf1:amd64. 399s Preparing to unpack .../024-liblzf1_3.6-4_amd64.deb ... 399s Unpacking liblzf1:amd64 (3.6-4) ... 399s Selecting previously unselected package python3-h5py-serial. 399s Preparing to unpack .../025-python3-h5py-serial_3.13.0-1_amd64.deb ... 399s Unpacking python3-h5py-serial (3.13.0-1) ... 399s Selecting previously unselected package python3-h5py. 399s Preparing to unpack .../026-python3-h5py_3.13.0-1_all.deb ... 399s Unpacking python3-h5py (3.13.0-1) ... 399s Selecting previously unselected package libgomp1:amd64. 399s Preparing to unpack .../027-libgomp1_15-20250404-0ubuntu1_amd64.deb ... 399s Unpacking libgomp1:amd64 (15-20250404-0ubuntu1) ... 399s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 399s Preparing to unpack .../028-libevent-pthreads-2.1-7t64_2.1.12-stable-10_amd64.deb ... 399s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-10) ... 399s Selecting previously unselected package libpsm-infinipath1. 399s Preparing to unpack .../029-libpsm-infinipath1_3.3+20.604758e7-6.4_amd64.deb ... 399s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.4) ... 399s Selecting previously unselected package libpsm2-2. 399s Preparing to unpack .../030-libpsm2-2_11.2.185-2.1_amd64.deb ... 399s Unpacking libpsm2-2 (11.2.185-2.1) ... 399s Selecting previously unselected package librdmacm1t64:amd64. 399s Preparing to unpack .../031-librdmacm1t64_56.0-4ubuntu1_amd64.deb ... 399s Unpacking librdmacm1t64:amd64 (56.0-4ubuntu1) ... 399s Selecting previously unselected package libfabric1:amd64. 399s Preparing to unpack .../032-libfabric1_1.17.0-3.1_amd64.deb ... 399s Unpacking libfabric1:amd64 (1.17.0-3.1) ... 399s Selecting previously unselected package libhwloc15:amd64. 399s Preparing to unpack .../033-libhwloc15_2.12.0-4_amd64.deb ... 399s Unpacking libhwloc15:amd64 (2.12.0-4) ... 399s Selecting previously unselected package libmunge2:amd64. 399s Preparing to unpack .../034-libmunge2_0.5.16-1_amd64.deb ... 399s Unpacking libmunge2:amd64 (0.5.16-1) ... 399s Selecting previously unselected package libpciaccess0:amd64. 399s Preparing to unpack .../035-libpciaccess0_0.17-3build1_amd64.deb ... 399s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 399s Selecting previously unselected package libxnvctrl0:amd64. 399s Preparing to unpack .../036-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 399s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 399s Selecting previously unselected package libze1:amd64. 399s Preparing to unpack .../037-libze1_1.20.6-1_amd64.deb 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libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 400s Selecting previously unselected package libhsakmt1:amd64. 400s Preparing to unpack .../043-libhsakmt1_5.7.0-1build1_amd64.deb ... 400s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 400s Selecting previously unselected package libhsa-runtime64-1. 400s Preparing to unpack .../044-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 400s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 400s Selecting previously unselected package libamdhip64-5. 400s Preparing to unpack .../045-libamdhip64-5_5.7.1-5.1_amd64.deb ... 400s Unpacking libamdhip64-5 (5.7.1-5.1) ... 401s Selecting previously unselected package libibumad3:amd64. 401s Preparing to unpack .../046-libibumad3_56.0-4ubuntu1_amd64.deb ... 401s Unpacking libibumad3:amd64 (56.0-4ubuntu1) ... 401s Selecting previously unselected package libibmad5:amd64. 401s Preparing to unpack .../047-libibmad5_56.0-4ubuntu1_amd64.deb ... 401s Unpacking libibmad5:amd64 (56.0-4ubuntu1) ... 401s Selecting previously unselected package libucx0:amd64. 401s Preparing to unpack .../048-libucx0_1.18.1+ds-2_amd64.deb ... 401s Unpacking libucx0:amd64 (1.18.1+ds-2) ... 401s Selecting previously unselected package libopenmpi40:amd64. 401s Preparing to unpack .../049-libopenmpi40_5.0.7-1_amd64.deb ... 401s Unpacking libopenmpi40:amd64 (5.0.7-1) ... 401s Selecting previously unselected package libhdf5-openmpi-310:amd64. 401s Preparing to unpack .../050-libhdf5-openmpi-310_1.14.5+repack-3_amd64.deb ... 401s Unpacking libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ... 401s Selecting previously unselected package bitshuffle. 401s Preparing to unpack .../051-bitshuffle_0.5.2-1build2_amd64.deb ... 401s Unpacking bitshuffle (0.5.2-1build2) ... 401s Selecting previously unselected package libtcl8.6:amd64. 401s Preparing to unpack .../052-libtcl8.6_8.6.16+dfsg-1_amd64.deb ... 401s Unpacking libtcl8.6:amd64 (8.6.16+dfsg-1) ... 401s Selecting previously unselected package fonts-dejavu-mono. 401s 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package libitm1:amd64. 402s Preparing to unpack .../064-libitm1_15-20250404-0ubuntu1_amd64.deb ... 402s Unpacking libitm1:amd64 (15-20250404-0ubuntu1) ... 402s Selecting previously unselected package libasan8:amd64. 402s Preparing to unpack .../065-libasan8_15-20250404-0ubuntu1_amd64.deb ... 402s Unpacking libasan8:amd64 (15-20250404-0ubuntu1) ... 402s Selecting previously unselected package liblsan0:amd64. 402s Preparing to unpack .../066-liblsan0_15-20250404-0ubuntu1_amd64.deb ... 402s Unpacking liblsan0:amd64 (15-20250404-0ubuntu1) ... 402s Selecting previously unselected package libtsan2:amd64. 402s Preparing to unpack .../067-libtsan2_15-20250404-0ubuntu1_amd64.deb ... 402s Unpacking libtsan2:amd64 (15-20250404-0ubuntu1) ... 402s Selecting previously unselected package libubsan1:amd64. 402s Preparing to unpack .../068-libubsan1_15-20250404-0ubuntu1_amd64.deb ... 402s Unpacking libubsan1:amd64 (15-20250404-0ubuntu1) ... 402s Selecting previously unselected package libhwasan0:amd64. 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Preparing to unpack .../079-clang-18_1%3a18.1.8-17_amd64.deb ... 403s Unpacking clang-18 (1:18.1.8-17) ... 403s Selecting previously unselected package libdconf1:amd64. 403s Preparing to unpack .../080-libdconf1_0.40.0-5_amd64.deb ... 403s Unpacking libdconf1:amd64 (0.40.0-5) ... 403s Selecting previously unselected package dconf-service. 403s Preparing to unpack .../081-dconf-service_0.40.0-5_amd64.deb ... 403s Unpacking dconf-service (0.40.0-5) ... 403s Selecting previously unselected package dconf-gsettings-backend:amd64. 403s Preparing to unpack .../082-dconf-gsettings-backend_0.40.0-5_amd64.deb ... 403s Unpacking dconf-gsettings-backend:amd64 (0.40.0-5) ... 403s Selecting previously unselected package fonts-glyphicons-halflings. 403s Preparing to unpack .../083-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 403s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 403s Selecting previously unselected package libjs-bootstrap. 403s Preparing to unpack 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libjs-mathjax (2.7.9+dfsg-1) ... 403s Selecting previously unselected package python3-pytz. 403s Preparing to unpack .../090-python3-pytz_2025.1-3_all.deb ... 403s Unpacking python3-pytz (2025.1-3) ... 404s Selecting previously unselected package python3-tz. 404s Preparing to unpack .../091-python3-tz_2025.1-3_all.deb ... 404s Unpacking python3-tz (2025.1-3) ... 404s Selecting previously unselected package python3-decorator. 404s Preparing to unpack .../092-python3-decorator_5.2.1-2_all.deb ... 404s Unpacking python3-decorator (5.2.1-2) ... 404s Selecting previously unselected package python3-fastjsonschema. 404s Preparing to unpack .../093-python3-fastjsonschema_2.21.1-1_all.deb ... 404s Unpacking python3-fastjsonschema (2.21.1-1) ... 404s Selecting previously unselected package python3-platformdirs. 404s Preparing to unpack .../094-python3-platformdirs_4.3.7-1_all.deb ... 404s Unpacking python3-platformdirs (4.3.7-1) ... 404s Selecting previously unselected package python3-traitlets. 404s Preparing to unpack .../095-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... 404s Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... 404s Selecting previously unselected package python3-jupyter-core. 404s Preparing to unpack .../096-python3-jupyter-core_5.7.2-5_all.deb ... 404s Unpacking python3-jupyter-core (5.7.2-5) ... 404s Selecting previously unselected package python3-nbformat. 404s Preparing to unpack .../097-python3-nbformat_5.9.1-1_all.deb ... 404s Unpacking python3-nbformat (5.9.1-1) ... 404s Selecting previously unselected package python3-tenacity. 404s Preparing to unpack .../098-python3-tenacity_9.0.0-0ubuntu1_all.deb ... 404s Unpacking python3-tenacity (9.0.0-0ubuntu1) ... 404s Selecting previously unselected package python3-plotly. 404s Preparing to unpack .../099-python3-plotly_5.20.0+dfsg-1_all.deb ... 404s Unpacking python3-plotly (5.20.0+dfsg-1) ... 405s Selecting previously unselected package libann-cctbx0. 405s Preparing to unpack .../100-libann-cctbx0_1.1.2+doc-9build1_amd64.deb ... 405s Unpacking libann-cctbx0 (1.1.2+doc-9build1) ... 405s Selecting previously unselected package libann-cctbx-dev. 405s Preparing to unpack .../101-libann-cctbx-dev_1.1.2+doc-9build1_amd64.deb ... 405s Unpacking libann-cctbx-dev (1.1.2+doc-9build1) ... 405s Selecting previously unselected package libboost1.83-dev:amd64. 405s Preparing to unpack .../102-libboost1.83-dev_1.83.0-4.2ubuntu1_amd64.deb ... 405s Unpacking libboost1.83-dev:amd64 (1.83.0-4.2ubuntu1) ... 407s Selecting previously unselected package libboost-python1.83.0. 407s Preparing to unpack .../103-libboost-python1.83.0_1.83.0-4.2ubuntu1_amd64.deb ... 407s Unpacking libboost-python1.83.0 (1.83.0-4.2ubuntu1) ... 407s Selecting previously unselected package libexpat1-dev:amd64. 407s Preparing to unpack .../104-libexpat1-dev_2.7.1-1_amd64.deb ... 407s Unpacking libexpat1-dev:amd64 (2.7.1-1) ... 407s Selecting previously unselected package zlib1g-dev:amd64. 407s Preparing to unpack .../105-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_amd64.deb ... 407s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 407s Selecting previously unselected package libpython3.13-dev:amd64. 407s Preparing to unpack .../106-libpython3.13-dev_3.13.3-1_amd64.deb ... 407s Unpacking libpython3.13-dev:amd64 (3.13.3-1) ... 407s Selecting previously unselected package libpython3-dev:amd64. 407s Preparing to unpack .../107-libpython3-dev_3.13.3-1_amd64.deb ... 407s Unpacking libpython3-dev:amd64 (3.13.3-1) ... 407s Selecting previously unselected package python3.13-dev. 407s Preparing to unpack .../108-python3.13-dev_3.13.3-1_amd64.deb ... 407s Unpacking python3.13-dev (3.13.3-1) ... 407s Selecting previously unselected package libjs-underscore. 407s Preparing to unpack .../109-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... 407s Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... 408s Selecting previously unselected package libjs-sphinxdoc. 408s Preparing to unpack .../110-libjs-sphinxdoc_8.1.3-5_all.deb ... 408s Unpacking libjs-sphinxdoc (8.1.3-5) ... 408s Selecting previously unselected package python3-dev. 408s Preparing to unpack .../111-python3-dev_3.13.3-1_amd64.deb ... 408s Unpacking python3-dev (3.13.3-1) ... 408s Selecting previously unselected package libboost-python1.83-dev. 408s Preparing to unpack .../112-libboost-python1.83-dev_1.83.0-4.2ubuntu1_amd64.deb ... 408s Unpacking libboost-python1.83-dev (1.83.0-4.2ubuntu1) ... 408s Selecting previously unselected package libboost-python-dev. 408s Preparing to unpack .../113-libboost-python-dev_1.83.0.2ubuntu1_amd64.deb ... 408s Unpacking libboost-python-dev (1.83.0.2ubuntu1) ... 408s Selecting previously unselected package libccp4-data. 408s Preparing to unpack .../114-libccp4-data_8.0.0-4_all.deb ... 408s Unpacking libccp4-data (8.0.0-4) ... 408s Selecting previously unselected package libccp4c0t64:amd64. 408s Preparing to unpack .../115-libccp4c0t64_8.0.0-4_amd64.deb ... 408s Unpacking libccp4c0t64:amd64 (8.0.0-4) ... 408s Selecting previously unselected package libmmdb2-0:amd64. 408s Preparing to unpack .../116-libmmdb2-0_2.0.22-1_amd64.deb ... 408s Unpacking libmmdb2-0:amd64 (2.0.22-1) ... 408s Selecting previously unselected package libccp4f0t64:amd64. 408s Preparing to unpack .../117-libccp4f0t64_8.0.0-4_amd64.deb ... 408s Unpacking libccp4f0t64:amd64 (8.0.0-4) ... 408s Selecting previously unselected package libccp4-dev:amd64. 408s Preparing to unpack .../118-libccp4-dev_8.0.0-4_amd64.deb ... 408s Unpacking libccp4-dev:amd64 (8.0.0-4) ... 408s Selecting previously unselected package libcbf1t64:amd64. 408s Preparing to unpack .../119-libcbf1t64_0.9.7+dfsg1-5build1_amd64.deb ... 408s Unpacking libcbf1t64:amd64 (0.9.7+dfsg1-5build1) ... 408s Selecting previously unselected package libcctbx0. 408s Preparing to unpack .../120-libcctbx0_2024.10+ds2+~3.22.1+ds1-4build2_amd64.deb ... 408s Unpacking libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 408s Selecting previously unselected package libcctbx-dev. 408s Preparing to unpack .../121-libcctbx-dev_2024.10+ds2+~3.22.1+ds1-4build2_amd64.deb ... 408s Unpacking libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 408s Selecting previously unselected package python3-legacy-cgi. 408s Preparing to unpack .../122-python3-legacy-cgi_2.6.3-1_all.deb ... 408s Unpacking python3-legacy-cgi (2.6.3-1) ... 408s Selecting previously unselected package python3-pycbf. 408s Preparing to unpack .../123-python3-pycbf_0.9.7+dfsg1-5build1_amd64.deb ... 408s Unpacking python3-pycbf (0.9.7+dfsg1-5build1) ... 408s Selecting previously unselected package python3-hdf5plugin. 408s Preparing to unpack .../124-python3-hdf5plugin_5.1.0-1_all.deb ... 408s Unpacking python3-hdf5plugin (5.1.0-1) ... 408s Selecting previously unselected package libjs-jquery-ui. 408s Preparing to unpack .../125-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 408s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 408s Selecting previously unselected package fonts-lyx. 408s Preparing to unpack .../126-fonts-lyx_2.4.3-1_all.deb ... 408s Unpacking fonts-lyx (2.4.3-1) ... 408s Selecting previously unselected package python-matplotlib-data. 408s Preparing to unpack .../127-python-matplotlib-data_3.8.3-7build1_all.deb ... 408s Unpacking python-matplotlib-data (3.8.3-7build1) ... 409s Selecting previously unselected package libimagequant0:amd64. 409s Preparing to unpack .../128-libimagequant0_2.18.0-1build1_amd64.deb ... 409s Unpacking libimagequant0:amd64 (2.18.0-1build1) ... 409s Selecting previously unselected package liblcms2-2:amd64. 409s Preparing to unpack .../129-liblcms2-2_2.16-2_amd64.deb ... 409s Unpacking liblcms2-2:amd64 (2.16-2) ... 409s Selecting previously unselected package libopenjp2-7:amd64. 409s Preparing to unpack .../130-libopenjp2-7_2.5.3-2_amd64.deb ... 409s Unpacking libopenjp2-7:amd64 (2.5.3-2) ... 409s Selecting previously unselected package libgraphite2-3:amd64. 409s Preparing to unpack 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python3-pil:amd64 (11.1.0-5build1) ... 409s Selecting previously unselected package python3.13-tk. 409s Preparing to unpack .../137-python3.13-tk_3.13.3-1_amd64.deb ... 409s Unpacking python3.13-tk (3.13.3-1) ... 409s Selecting previously unselected package python3-tk:amd64. 409s Preparing to unpack .../138-python3-tk_3.13.3-1_amd64.deb ... 409s Unpacking python3-tk:amd64 (3.13.3-1) ... 409s Selecting previously unselected package python3-pil.imagetk:amd64. 409s Preparing to unpack .../139-python3-pil.imagetk_11.1.0-5build1_amd64.deb ... 409s Unpacking python3-pil.imagetk:amd64 (11.1.0-5build1) ... 409s Selecting previously unselected package python3-contourpy. 409s Preparing to unpack .../140-python3-contourpy_1.3.1-1build1_amd64.deb ... 409s Unpacking python3-contourpy (1.3.1-1build1) ... 409s Selecting previously unselected package python3-cycler. 409s Preparing to unpack .../141-python3-cycler_0.12.1-1_all.deb ... 409s Unpacking python3-cycler (0.12.1-1) ... 409s Selecting previously unselected package python3-brotli. 409s Preparing to unpack .../142-python3-brotli_1.1.0-2build4_amd64.deb ... 409s Unpacking python3-brotli (1.1.0-2build4) ... 409s Selecting previously unselected package python3-fs. 409s Preparing to unpack .../143-python3-fs_2.4.16-7_all.deb ... 409s Unpacking python3-fs (2.4.16-7) ... 409s Selecting previously unselected package libxslt1.1:amd64. 409s Preparing to unpack .../144-libxslt1.1_1.1.39-0exp1ubuntu4_amd64.deb ... 409s Unpacking libxslt1.1:amd64 (1.1.39-0exp1ubuntu4) ... 409s Selecting previously unselected package python3-lxml:amd64. 409s Preparing to unpack .../145-python3-lxml_5.4.0-1_amd64.deb ... 409s Unpacking python3-lxml:amd64 (5.4.0-1) ... 409s Selecting previously unselected package python3-lz4. 409s Preparing to unpack .../146-python3-lz4_4.4.0+dfsg-2_amd64.deb ... 409s Unpacking python3-lz4 (4.4.0+dfsg-2) ... 409s Selecting previously unselected package liblbfgsb0:amd64. 410s Preparing to unpack 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python3-unicodedata2 (15.1.0+ds-1build3) ... 411s Selecting previously unselected package python3-all. 411s Preparing to unpack .../153-python3-all_3.13.3-1_amd64.deb ... 411s Unpacking python3-all (3.13.3-1) ... 411s Selecting previously unselected package unicode-data. 411s Preparing to unpack .../154-unicode-data_15.1.0-1_all.deb ... 411s Unpacking unicode-data (15.1.0-1) ... 411s Selecting previously unselected package python3-fonttools. 411s Preparing to unpack .../155-python3-fonttools_4.55.3-2build1_amd64.deb ... 411s Unpacking python3-fonttools (4.55.3-2build1) ... 411s Selecting previously unselected package python3-importlib-resources. 411s Preparing to unpack .../156-python3-importlib-resources_6.5.2-1_all.deb ... 411s Unpacking python3-importlib-resources (6.5.2-1) ... 411s Selecting previously unselected package python3-kiwisolver. 411s Preparing to unpack .../157-python3-kiwisolver_1.4.7-3build1_amd64.deb ... 411s Unpacking python3-kiwisolver (1.4.7-3build1) ... 411s Selecting previously unselected package libqhull-r8.0:amd64. 411s Preparing to unpack .../158-libqhull-r8.0_2020.2-6build1_amd64.deb ... 411s Unpacking libqhull-r8.0:amd64 (2020.2-6build1) ... 411s Selecting previously unselected package python3-matplotlib. 411s Preparing to unpack .../159-python3-matplotlib_3.8.3-7build1_amd64.deb ... 411s Unpacking python3-matplotlib (3.8.3-7build1) ... 411s Selecting previously unselected package fonts-font-awesome. 411s Preparing to unpack .../160-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 411s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 412s Selecting previously unselected package sphinx-rtd-theme-common. 412s Preparing to unpack .../161-sphinx-rtd-theme-common_3.0.2+dfsg-2_all.deb ... 412s Unpacking sphinx-rtd-theme-common (3.0.2+dfsg-2) ... 412s Selecting previously unselected package python3-mrcfile. 412s Preparing to unpack .../162-python3-mrcfile_1.5.4-2_all.deb ... 412s Unpacking python3-mrcfile (1.5.4-2) 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Unpacking libx11-xcb1:amd64 (2:1.8.12-1) ... 412s Selecting previously unselected package libxcb-dri3-0:amd64. 412s Preparing to unpack .../174-libxcb-dri3-0_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-dri3-0:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxcb-present0:amd64. 412s Preparing to unpack .../175-libxcb-present0_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-present0:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxcb-randr0:amd64. 412s Preparing to unpack .../176-libxcb-randr0_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-randr0:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxcb-sync1:amd64. 412s Preparing to unpack .../177-libxcb-sync1_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-sync1:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxcb-xfixes0:amd64. 412s Preparing to unpack .../178-libxcb-xfixes0_1.17.0-2_amd64.deb ... 412s Unpacking libxcb-xfixes0:amd64 (1.17.0-2) ... 412s Selecting previously unselected package libxshmfence1:amd64. 412s Preparing to unpack .../179-libxshmfence1_1.3.3-1_amd64.deb ... 412s Unpacking libxshmfence1:amd64 (1.3.3-1) ... 412s Selecting previously unselected package mesa-libgallium:amd64. 412s Preparing to unpack .../180-mesa-libgallium_25.0.3-1ubuntu2_amd64.deb ... 412s Unpacking mesa-libgallium:amd64 (25.0.3-1ubuntu2) ... 413s Selecting previously unselected package libgbm1:amd64. 413s Preparing to unpack .../181-libgbm1_25.0.3-1ubuntu2_amd64.deb ... 413s Unpacking libgbm1:amd64 (25.0.3-1ubuntu2) ... 413s Selecting previously unselected package libwayland-client0:amd64. 413s Preparing to unpack .../182-libwayland-client0_1.23.1-3_amd64.deb ... 413s Unpacking libwayland-client0:amd64 (1.23.1-3) ... 413s Selecting previously unselected package libxcb-shm0:amd64. 413s Preparing to unpack .../183-libxcb-shm0_1.17.0-2_amd64.deb ... 413s Unpacking libxcb-shm0:amd64 (1.17.0-2) ... 413s Selecting previously unselected package libegl-mesa0:amd64. 413s Preparing to unpack .../184-libegl-mesa0_25.0.3-1ubuntu2_amd64.deb ... 413s Unpacking libegl-mesa0:amd64 (25.0.3-1ubuntu2) ... 413s Selecting previously unselected package libegl1:amd64. 413s Preparing to unpack .../185-libegl1_1.7.0-1build1_amd64.deb ... 413s Unpacking libegl1:amd64 (1.7.0-1build1) ... 413s Selecting previously unselected package libxcb-glx0:amd64. 413s Preparing to unpack .../186-libxcb-glx0_1.17.0-2_amd64.deb ... 413s Unpacking libxcb-glx0:amd64 (1.17.0-2) ... 413s Selecting previously unselected package libxxf86vm1:amd64. 413s Preparing to unpack .../187-libxxf86vm1_1%3a1.1.4-1build4_amd64.deb ... 413s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build4) ... 413s Selecting previously unselected package libvulkan1:amd64. 413s Preparing to unpack .../188-libvulkan1_1.4.309.0-1_amd64.deb ... 413s Unpacking libvulkan1:amd64 (1.4.309.0-1) ... 413s Selecting previously unselected package libgl1-mesa-dri:amd64. 413s Preparing to unpack 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Unpacking libglu1-mesa:amd64 (9.0.2-1.1build1) ... 413s Selecting previously unselected package libxi6:amd64. 413s Preparing to unpack .../195-libxi6_2%3a1.8.2-1_amd64.deb ... 413s Unpacking libxi6:amd64 (2:1.8.2-1) ... 413s Selecting previously unselected package libglut3.12:amd64. 413s Preparing to unpack .../196-libglut3.12_3.4.0-4_amd64.deb ... 413s Unpacking libglut3.12:amd64 (3.4.0-4) ... 413s Selecting previously unselected package python3-opengl. 413s Preparing to unpack .../197-python3-opengl_3.1.9+dfsg-1syncable1_all.deb ... 413s Unpacking python3-opengl (3.1.9+dfsg-1syncable1) ... 414s Selecting previously unselected package python3-pyqt5.sip. 414s Preparing to unpack .../198-python3-pyqt5.sip_12.17.0-1build1_amd64.deb ... 414s Unpacking python3-pyqt5.sip (12.17.0-1build1) ... 414s Selecting previously unselected package libdouble-conversion3:amd64. 414s Preparing to unpack .../199-libdouble-conversion3_3.3.1-1_amd64.deb ... 414s Unpacking libdouble-conversion3:amd64 (3.3.1-1) ... 414s Selecting previously unselected package libpcre2-16-0:amd64. 414s Preparing to unpack .../200-libpcre2-16-0_10.45-1_amd64.deb ... 414s Unpacking libpcre2-16-0:amd64 (10.45-1) ... 414s Selecting previously unselected package libqt5core5t64:amd64. 414s Preparing to unpack .../201-libqt5core5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 414s Unpacking libqt5core5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 414s Selecting previously unselected package libqt5dbus5t64:amd64. 414s Preparing to unpack .../202-libqt5dbus5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 414s Unpacking libqt5dbus5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 414s Selecting previously unselected package fontconfig. 414s Preparing to unpack .../203-fontconfig_2.15.0-2.2ubuntu1_amd64.deb ... 414s Unpacking fontconfig (2.15.0-2.2ubuntu1) ... 414s Selecting previously unselected package libice6:amd64. 414s Preparing to unpack .../204-libice6_2%3a1.1.1-1_amd64.deb ... 414s Unpacking libice6:amd64 (2:1.1.1-1) ... 414s Selecting previously unselected package libmtdev1t64:amd64. 414s Preparing to unpack .../205-libmtdev1t64_1.1.7-1_amd64.deb ... 414s Unpacking libmtdev1t64:amd64 (1.1.7-1) ... 414s Selecting previously unselected package libwacom-common. 414s Preparing to unpack .../206-libwacom-common_2.14.0-1_all.deb ... 414s Unpacking libwacom-common (2.14.0-1) ... 414s Selecting previously unselected package libwacom9:amd64. 414s Preparing to unpack .../207-libwacom9_2.14.0-1_amd64.deb ... 414s Unpacking libwacom9:amd64 (2.14.0-1) ... 414s Selecting previously unselected package libinput-bin. 414s Preparing to unpack .../208-libinput-bin_1.28.1-1_amd64.deb ... 414s Unpacking libinput-bin (1.28.1-1) ... 414s Selecting previously unselected package libinput10:amd64. 414s Preparing to unpack .../209-libinput10_1.28.1-1_amd64.deb ... 414s Unpacking libinput10:amd64 (1.28.1-1) ... 414s Selecting previously unselected package libmd4c0:amd64. 414s Preparing to unpack .../210-libmd4c0_0.5.2-2_amd64.deb ... 414s Unpacking libmd4c0:amd64 (0.5.2-2) ... 414s Selecting previously unselected package libqt5network5t64:amd64. 414s Preparing to unpack .../211-libqt5network5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 414s Unpacking libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 414s Selecting previously unselected package libsm6:amd64. 414s Preparing to unpack .../212-libsm6_2%3a1.2.6-1_amd64.deb ... 414s Unpacking libsm6:amd64 (2:1.2.6-1) ... 414s Selecting previously unselected package libxcb-icccm4:amd64. 414s Preparing to unpack .../213-libxcb-icccm4_0.4.2-1_amd64.deb ... 414s Unpacking libxcb-icccm4:amd64 (0.4.2-1) ... 414s Selecting previously unselected package libxcb-util1:amd64. 415s Preparing to unpack .../214-libxcb-util1_0.4.1-1_amd64.deb ... 415s Unpacking libxcb-util1:amd64 (0.4.1-1) ... 415s Selecting previously unselected package libxcb-image0:amd64. 415s Preparing to unpack .../215-libxcb-image0_0.4.0-2build1_amd64.deb ... 415s Unpacking libxcb-image0:amd64 (0.4.0-2build1) ... 415s Selecting previously unselected package libxcb-keysyms1:amd64. 415s Preparing to unpack .../216-libxcb-keysyms1_0.4.1-1_amd64.deb ... 415s Unpacking libxcb-keysyms1:amd64 (0.4.1-1) ... 415s Selecting previously unselected package libxcb-render0:amd64. 415s Preparing to unpack .../217-libxcb-render0_1.17.0-2_amd64.deb ... 415s Unpacking libxcb-render0:amd64 (1.17.0-2) ... 415s Selecting previously unselected package libxcb-render-util0:amd64. 415s Preparing to unpack .../218-libxcb-render-util0_0.3.10-1_amd64.deb ... 415s Unpacking libxcb-render-util0:amd64 (0.3.10-1) ... 415s Selecting previously unselected package libxcb-shape0:amd64. 415s Preparing to unpack .../219-libxcb-shape0_1.17.0-2_amd64.deb ... 415s Unpacking libxcb-shape0:amd64 (1.17.0-2) ... 415s Selecting previously unselected package libxcb-xinerama0:amd64. 415s Preparing to unpack .../220-libxcb-xinerama0_1.17.0-2_amd64.deb ... 415s Unpacking libxcb-xinerama0:amd64 (1.17.0-2) ... 415s Selecting previously unselected package libxcb-xinput0:amd64. 415s Preparing to unpack .../221-libxcb-xinput0_1.17.0-2_amd64.deb ... 415s Unpacking libxcb-xinput0:amd64 (1.17.0-2) ... 415s Selecting previously unselected package libxcb-xkb1:amd64. 415s Preparing to unpack .../222-libxcb-xkb1_1.17.0-2_amd64.deb ... 415s Unpacking libxcb-xkb1:amd64 (1.17.0-2) ... 415s Selecting previously unselected package libxkbcommon-x11-0:amd64. 415s Preparing to unpack .../223-libxkbcommon-x11-0_1.7.0-2_amd64.deb ... 415s Unpacking libxkbcommon-x11-0:amd64 (1.7.0-2) ... 415s Selecting previously unselected package libqt5gui5t64:amd64. 415s Preparing to unpack .../224-libqt5gui5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 415s Unpacking libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 415s Selecting previously unselected package libqt5widgets5t64:amd64. 415s Preparing to unpack .../225-libqt5widgets5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 415s Unpacking libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 415s Selecting previously unselected package libqt5xml5t64:amd64. 415s Preparing to unpack .../226-libqt5xml5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 415s Unpacking libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 415s Selecting previously unselected package libqt5designer5:amd64. 415s Preparing to unpack .../227-libqt5designer5_5.15.15-6build1_amd64.deb ... 415s Unpacking libqt5designer5:amd64 (5.15.15-6build1) ... 415s Selecting previously unselected package libqt5sql5t64:amd64. 415s Preparing to unpack .../228-libqt5sql5t64_5.15.15+dfsg-4ubuntu1_amd64.deb ... 415s Unpacking libqt5sql5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 415s Selecting previously unselected package libqt5help5:amd64. 415s Preparing to unpack .../229-libqt5help5_5.15.15-6build1_amd64.deb ... 415s Unpacking libqt5help5:amd64 (5.15.15-6build1) ... 415s Selecting previously unselected package libavahi-common-data:amd64. 415s Preparing to unpack .../230-libavahi-common-data_0.8-16ubuntu2_amd64.deb ... 415s Unpacking libavahi-common-data:amd64 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Preparing to unpack .../240-libnetcdf22_1%3a4.9.3-1_amd64.deb ... 416s Unpacking libnetcdf22:amd64 (1:4.9.3-1) ... 416s Selecting previously unselected package pymol-data. 416s Preparing to unpack .../241-pymol-data_3.1.0+dfsg-1_all.deb ... 416s Unpacking pymol-data (3.1.0+dfsg-1) ... 416s Selecting previously unselected package python3-pymol. 416s Preparing to unpack .../242-python3-pymol_3.1.0+dfsg-1_amd64.deb ... 416s Unpacking python3-pymol (3.1.0+dfsg-1) ... 416s Selecting previously unselected package python3-tqdm. 416s Preparing to unpack .../243-python3-tqdm_4.67.1-3_all.deb ... 416s Unpacking python3-tqdm (4.67.1-3) ... 416s Selecting previously unselected package libpcre2-32-0:amd64. 416s Preparing to unpack .../244-libpcre2-32-0_10.45-1_amd64.deb ... 416s Unpacking libpcre2-32-0:amd64 (10.45-1) ... 416s Selecting previously unselected package libwxbase3.2-1t64:amd64. 416s Preparing to unpack .../245-libwxbase3.2-1t64_3.2.6+dfsg-2ubuntu1_amd64.deb ... 416s Unpacking 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unpack .../256-libthai0_0.1.29-2build1_amd64.deb ... 417s Unpacking libthai0:amd64 (0.1.29-2build1) ... 417s Selecting previously unselected package libpango-1.0-0:amd64. 417s Preparing to unpack .../257-libpango-1.0-0_1.56.3-1_amd64.deb ... 417s Unpacking libpango-1.0-0:amd64 (1.56.3-1) ... 417s Selecting previously unselected package libpangoft2-1.0-0:amd64. 417s Preparing to unpack .../258-libpangoft2-1.0-0_1.56.3-1_amd64.deb ... 417s Unpacking libpangoft2-1.0-0:amd64 (1.56.3-1) ... 417s Selecting previously unselected package libpangocairo-1.0-0:amd64. 417s Preparing to unpack .../259-libpangocairo-1.0-0_1.56.3-1_amd64.deb ... 417s Unpacking libpangocairo-1.0-0:amd64 (1.56.3-1) ... 417s Selecting previously unselected package libwayland-cursor0:amd64. 417s Preparing to unpack .../260-libwayland-cursor0_1.23.1-3_amd64.deb ... 417s Unpacking libwayland-cursor0:amd64 (1.23.1-3) ... 417s Selecting previously unselected package libwayland-egl1:amd64. 417s Preparing to unpack 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unselected package python3-pandas-lib:amd64. 419s Preparing to unpack .../281-python3-pandas-lib_2.2.3+dfsg-8build1_amd64.deb ... 419s Unpacking python3-pandas-lib:amd64 (2.2.3+dfsg-8build1) ... 419s Selecting previously unselected package python3-pandas. 419s Preparing to unpack .../282-python3-pandas_2.2.3+dfsg-8build1_all.deb ... 419s Unpacking python3-pandas (2.2.3+dfsg-8build1) ... 419s Selecting previously unselected package python3-psutil. 419s Preparing to unpack .../283-python3-psutil_5.9.8-2build3_amd64.deb ... 419s Unpacking python3-psutil (5.9.8-2build3) ... 419s Selecting previously unselected package python3-fabio. 419s Preparing to unpack .../284-python3-fabio_2024.9.0-7_amd64.deb ... 419s Unpacking python3-fabio (2024.9.0-7) ... 419s Selecting previously unselected package python3-numexpr. 419s Preparing to unpack .../285-python3-numexpr_2.10.2-1build2_amd64.deb ... 419s Unpacking python3-numexpr (2.10.2-1build2) ... 420s Selecting previously unselected package python3-mako. 420s Preparing to unpack .../286-python3-mako_1.3.9-1_all.deb ... 420s Unpacking python3-mako (1.3.9-1) ... 420s Selecting previously unselected package libpocl2-common. 420s Preparing to unpack .../287-libpocl2-common_6.0-6_all.deb ... 420s Unpacking libpocl2-common (6.0-6) ... 420s Selecting previously unselected package libllvmspirvlib18.1:amd64. 420s Preparing to unpack .../288-libllvmspirvlib18.1_18.1.11-1_amd64.deb ... 420s Unpacking libllvmspirvlib18.1:amd64 (18.1.11-1) ... 420s Selecting previously unselected package llvm-spirv-18. 420s Preparing to unpack .../289-llvm-spirv-18_18.1.11-1_amd64.deb ... 420s Unpacking llvm-spirv-18 (18.1.11-1) ... 420s Selecting previously unselected package libpocl2t64:amd64. 420s Preparing to unpack .../290-libpocl2t64_6.0-6_amd64.deb ... 420s Unpacking libpocl2t64:amd64 (6.0-6) ... 420s Selecting previously unselected package pocl-opencl-icd:amd64. 420s Preparing to unpack .../291-pocl-opencl-icd_6.0-6_amd64.deb ... 420s Unpacking pocl-opencl-icd:amd64 (6.0-6) ... 420s Selecting previously unselected package python3-pytools. 420s Preparing to unpack .../292-python3-pytools_2025.1.2-1_all.deb ... 420s Unpacking python3-pytools (2025.1.2-1) ... 420s Selecting previously unselected package python3-pyopencl. 420s Preparing to unpack .../293-python3-pyopencl_2024.1-3build1_amd64.deb ... 420s Unpacking python3-pyopencl (2024.1-3build1) ... 420s Selecting previously unselected package libqt5svg5:amd64. 420s Preparing to unpack .../294-libqt5svg5_5.15.15-2_amd64.deb ... 420s Unpacking libqt5svg5:amd64 (5.15.15-2) ... 420s Selecting previously unselected package python3-pyqt5.qtsvg. 420s Preparing to unpack .../295-python3-pyqt5.qtsvg_5.15.11+dfsg-2_amd64.deb ... 420s Unpacking python3-pyqt5.qtsvg (5.15.11+dfsg-2) ... 420s Selecting previously unselected package python3-comm. 420s Preparing to unpack .../296-python3-comm_0.2.1-1_all.deb ... 420s Unpacking python3-comm (0.2.1-1) ... 420s Selecting previously unselected package libbabeltrace1:amd64. 420s Preparing to unpack .../297-libbabeltrace1_1.5.11-4build2_amd64.deb ... 420s Unpacking libbabeltrace1:amd64 (1.5.11-4build2) ... 420s Selecting previously unselected package libipt2. 420s Preparing to unpack .../298-libipt2_2.1.2-1_amd64.deb ... 420s Unpacking libipt2 (2.1.2-1) ... 420s Selecting previously unselected package libsource-highlight-common. 420s Preparing to unpack .../299-libsource-highlight-common_3.1.9-4.3build1_all.deb ... 420s Unpacking libsource-highlight-common (3.1.9-4.3build1) ... 420s Selecting previously unselected package libsource-highlight4t64:amd64. 420s Preparing to unpack .../300-libsource-highlight4t64_3.1.9-4.3build1_amd64.deb ... 420s Unpacking libsource-highlight4t64:amd64 (3.1.9-4.3build1) ... 420s Selecting previously unselected package gdb. 420s Preparing to unpack .../301-gdb_16.2-8ubuntu1_amd64.deb ... 420s Unpacking gdb (16.2-8ubuntu1) ... 421s Selecting previously unselected package python3-coverage. 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422s Unpacking python3-pure-eval (0.2.3-1) ... 422s Selecting previously unselected package python3-stack-data. 422s Preparing to unpack .../313-python3-stack-data_0.6.3-1_all.deb ... 422s Unpacking python3-stack-data (0.6.3-1) ... 422s Selecting previously unselected package python3-ipython. 422s Preparing to unpack .../314-python3-ipython_8.35.0-1_all.deb ... 422s Unpacking python3-ipython (8.35.0-1) ... 422s Selecting previously unselected package python3-tornado. 422s Preparing to unpack .../315-python3-tornado_6.4.2-1_amd64.deb ... 422s Unpacking python3-tornado (6.4.2-1) ... 422s Selecting previously unselected package libnorm1t64:amd64. 422s Preparing to unpack .../316-libnorm1t64_1.5.9+dfsg-3.1build1_amd64.deb ... 422s Unpacking libnorm1t64:amd64 (1.5.9+dfsg-3.1build1) ... 422s Selecting previously unselected package libpgm-5.3-0t64:amd64. 422s Preparing to unpack .../317-libpgm-5.3-0t64_5.3.128~dfsg-2.1build1_amd64.deb ... 422s Unpacking libpgm-5.3-0t64:amd64 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libwebpdemux2:amd64 (1.5.0-0.1) ... 435s Setting up libxcursor1:amd64 (1:1.2.3-1) ... 435s Setting up libgl1-mesa-dri:amd64 (25.0.3-1ubuntu2) ... 435s Setting up libqt5network5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 435s Setting up libavahi-common3:amd64 (0.8-16ubuntu2) ... 435s Setting up libqt5xml5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 435s Setting up libobjc4:amd64 (15-20250404-0ubuntu1) ... 435s Setting up dconf-service (0.40.0-5) ... 435s Setting up libsource-highlight4t64:amd64 (3.1.9-4.3build1) ... 435s Setting up python3-nbformat (5.9.1-1) ... 435s Setting up libqt5test5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 435s Setting up libhwloc-plugins:amd64 (2.12.0-4) ... 435s Setting up libccp4f0t64:amd64 (8.0.0-4) ... 435s Setting up libinput-bin (1.28.1-1) ... 435s Setting up python3-matplotlib-inline (0.1.7-1) ... 435s Setting up python3-comm (0.2.1-1) ... 435s Setting up python3-pint (0.24.4-1) ... 436s Setting up libthai0:amd64 (0.1.29-2build1) ... 436s Setting up libegl-mesa0:amd64 (25.0.3-1ubuntu2) ... 436s Setting up gdb (16.2-8ubuntu1) ... 436s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 436s Setting up python3-ipython (8.35.0-1) ... 436s Setting up python3-zmq (26.2.1-1build1) ... 436s Setting up libraqm0:amd64 (0.10.2-1) ... 436s Setting up libpython3.13-dev:amd64 (3.13.3-1) ... 436s Setting up libpmix2t64:amd64 (5.0.7-1) ... 436s Setting up python3-plotly (5.20.0+dfsg-1) ... 441s Setting up python3-numpy (1:2.2.4+ds-1) ... 443s Setting up libjs-sphinxdoc (8.1.3-5) ... 443s Setting up llvm-spirv-18 (18.1.11-1) ... 443s Setting up libhdf5-310:amd64 (1.14.5+repack-3) ... 443s Setting up python3-pytest-mock (3.14.0-2) ... 443s Setting up python3-lxml:amd64 (5.4.0-1) ... 443s Setting up libtiff6:amd64 (4.7.0-3ubuntu1) ... 443s Setting up libwayland-cursor0:amd64 (1.23.1-3) ... 443s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 443s Setting up libegl1:amd64 (1.7.0-1build1) ... 443s Setting up python3-jupyter-client (8.6.3-2) ... 443s Setting up libgdk-pixbuf-2.0-0:amd64 (2.42.12+dfsg-2) ... 443s Setting up python3-contourpy (1.3.1-1build1) ... 443s Setting up libfontconfig1:amd64 (2.15.0-2.2ubuntu1) ... 443s Setting up libgcc-14-dev:amd64 (14.2.0-19ubuntu2) ... 443s Setting up python3-dials-data (2.4.0-2) ... 443s Setting up libstdc++-14-dev:amd64 (14.2.0-19ubuntu2) ... 443s Setting up libsm6:amd64 (2:1.2.6-1) ... 443s Setting up libavahi-client3:amd64 (0.8-16ubuntu2) ... 443s Setting up liblbfgsb0:amd64 (3.0+dfsg.4-1build1) ... 443s Setting up python3-mrcfile (1.5.4-2) ... 444s Setting up libatk-bridge2.0-0t64:amd64 (2.56.2-1) ... 444s Setting up libinput10:amd64 (1.28.1-1) ... 444s Setting up gtk-update-icon-cache (4.18.5+ds-1) ... 444s Setting up libhdf5-hl-310:amd64 (1.14.5+repack-3) ... 444s Setting up fontconfig (2.15.0-2.2ubuntu1) ... 446s Regenerating fonts cache... done. 446s Setting up libxft2:amd64 (2.3.6-1build1) ... 446s Setting up libboost1.83-dev:amd64 (1.83.0-4.2ubuntu1) ... 446s Setting up libglx-mesa0:amd64 (25.0.3-1ubuntu2) ... 446s Setting up python3-scipy (1.14.1-4ubuntu2) ... 448s Setting up libpython3-dev:amd64 (3.13.3-1) ... 448s Setting up libcbf1t64:amd64 (0.9.7+dfsg1-5build1) ... 448s Setting up python3-pytest-xdist (3.6.1-1) ... 448s Setting up libglx0:amd64 (1.7.0-1build1) ... 448s Setting up dconf-gsettings-backend:amd64 (0.40.0-5) ... 448s Setting up libccp4-dev:amd64 (8.0.0-4) ... 448s Setting up python3.13-dev (3.13.3-1) ... 448s Setting up libtk8.6:amd64 (8.6.16-1) ... 448s Setting up python3-pandas-lib:amd64 (2.2.3+dfsg-8build1) ... 448s Setting up libpango-1.0-0:amd64 (1.56.3-1) ... 448s Setting up libnetcdf22:amd64 (1:4.9.3-1) ... 448s Setting up python3-sklearn-lib:amd64 (1.4.2+dfsg-8) ... 448s Setting up python3-h5py-serial (3.13.0-1) ... 448s Setting up libobjc-14-dev:amd64 (14.2.0-19ubuntu2) ... 448s Setting up python3-debugpy (1.8.8+ds-2ubuntu1) ... 449s Setting up libcairo2:amd64 (1.18.4-1) ... 449s Setting up python3.13-tk (3.13.3-1) ... 449s Setting up python3-pil:amd64 (11.1.0-5build1) ... 449s Setting up libgl1:amd64 (1.7.0-1build1) ... 449s Setting up python3-pandas (2.2.3+dfsg-8build1) ... 452s Setting up libamdhip64-5 (5.7.1-5.1) ... 452s Setting up adwaita-icon-theme (48.0-1) ... 453s update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode 453s Setting up libglut3.12:amd64 (3.4.0-4) ... 453s Setting up libnotify4:amd64 (0.8.6-1) ... 453s Setting up python3-dev (3.13.3-1) ... 453s Setting up libboost-python1.83-dev (1.83.0-4.2ubuntu1) ... 453s Setting up python3-pycbf (0.9.7+dfsg1-5build1) ... 453s Setting up python3-ipykernel (6.29.5-2) ... 453s Setting up python3-h5py (3.13.0-1) ... 453s Setting up python3-sklearn (1.4.2+dfsg-8) ... 454s Setting up python3-numexpr (2.10.2-1build2) ... 454s Setting up python3-pytools (2025.1.2-1) ... 455s Setting up libglew2.2:amd64 (2.2.0-4build1) ... 455s Setting up python3-hdf5plugin (5.1.0-1) ... 455s Setting up libcairo-gobject2:amd64 (1.18.4-1) ... 455s Setting up libpangoft2-1.0-0:amd64 (1.56.3-1) ... 455s Setting up python3-nxmx (0.0.4-1) ... 455s Setting up libcups2t64:amd64 (2.4.12-0ubuntu1) ... 455s Setting up libgtk-3-common (3.24.49-2ubuntu1) ... 455s Setting up libpangocairo-1.0-0:amd64 (1.56.3-1) ... 455s Setting up libcctbx0 (2024.10+ds2+~3.22.1+ds1-4build2) ... 455s Setting up tk8.6-blt2.5 (2.5.3+dfsg-8) ... 455s Setting up libucx0:amd64 (1.18.1+ds-2) ... 455s Setting up blt (2.5.3+dfsg-8) ... 455s Setting up python3-tk:amd64 (3.13.3-1) ... 455s Setting up clang-18 (1:18.1.8-17) ... 455s Setting up python3-opengl (3.1.9+dfsg-1syncable1) ... 455s /usr/lib/python3/dist-packages/OpenGL/GL/AMD/vertex_shader_tessellator.py:30: SyntaxWarning: invalid escape sequence '\ ' 455s |\ |\ 456s Setting up python3-qtconsole (5.6.1-4) ... 456s Setting up libboost-python-dev (1.83.0.2ubuntu1) ... 456s Setting up libqt5gui5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 456s Setting up python3-pil.imagetk:amd64 (11.1.0-5build1) ... 456s Setting up libcctbx-dev (2024.10+ds2+~3.22.1+ds1-4build2) ... 456s Setting up libopenmpi40:amd64 (5.0.7-1) ... 456s Setting up libqt5widgets5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 456s Setting up libpocl2t64:amd64 (6.0-6) ... 456s Setting up libqt5svg5:amd64 (5.15.15-2) ... 456s Setting up libhdf5-openmpi-310:amd64 (1.14.5+repack-3) ... 456s Setting up libqt5help5:amd64 (5.15.15-6build1) ... 456s Setting up pocl-opencl-icd:amd64 (6.0-6) ... 456s Setting up libqt5opengl5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 456s Setting up python3-pyopencl (2024.1-3build1) ... 457s Setting up libqt5printsupport5t64:amd64 (5.15.15+dfsg-4ubuntu1) ... 457s Setting up bitshuffle (0.5.2-1build2) ... 457s Setting up libqt5designer5:amd64 (5.15.15-6build1) ... 457s Setting up python3-pyqt5 (5.15.11+dfsg-2) ... 457s Setting up python3-pyqt5.qtsvg (5.15.11+dfsg-2) ... 457s Setting up python3-pyqt5.qtopengl (5.15.11+dfsg-2) ... 457s Setting up python3-pymol (3.1.0+dfsg-1) ... 457s Setting up python3-fonttools (4.55.3-2build1) ... 458s Setting up python3-ufolib2 (0.17.1+dfsg1-1) ... 458s Setting up python3-matplotlib (3.8.3-7build1) ... 459s Setting up python3-fabio (2024.9.0-7) ... 460s Setting up python3-silx (2.2.1+dfsg-3) ... 461s Setting up python3-pyfai (2025.03-1) ... 461s Processing triggers for libc-bin (2.41-6ubuntu1) ... 462s Processing triggers for man-db (2.13.1-1) ... 462s Processing triggers for libglib2.0-0t64:amd64 (2.84.1-2) ... 462s Setting up libgtk-3-0t64:amd64 (3.24.49-2ubuntu1) ... 462s Processing triggers for udev (257.4-1ubuntu3) ... 463s Setting up libwxgtk3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 463s Setting up libwxgtk-gl3.2-1t64:amd64 (3.2.6+dfsg-2ubuntu1) ... 463s Setting up python3-wxgtk4.0 (4.2.2+dfsg-3build1) ... 464s Setting up python3-cctbx (2024.10+ds2+~3.22.1+ds1-4build2) ... 466s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:18: SyntaxWarning: invalid escape sequence '\{' 466s []_,.;:"&<>()/\{}'`~!@#$%*|+- 466s /usr/lib/python3/dist-packages/iotbx/pdb/utils.py:46: SyntaxWarning: invalid escape sequence '\/' 466s special_characters = """[]_,.;:"&<>()\/\{}'`~!@#$%*|+-""" 474s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:724: SyntaxWarning: invalid escape sequence '\o' 474s width=pairwise_differences_db, label='$\omega_{hkl}$' 474s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:739: SyntaxWarning: invalid escape sequence '\o' 474s axes[0].set_ylabel('Distribution of $\omega_{hbk}$') 474s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:740: SyntaxWarning: invalid escape sequence '\o' 474s axes[0].set_xlabel('Normalized PD ($\omega_{hbk}$)') 474s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:759: SyntaxWarning: invalid escape sequence '\o' 474s axes[1].set_xlabel('Sorted Normalized PD ($\omega_{hbk}$)') 474s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:778: SyntaxWarning: invalid escape sequence '\s' 474s axes[2].set_ylabel('Standard Deviation of $I_{hbk}/\sigma_{hbk}$') 474s /usr/lib/python3/dist-packages/xfel/merging/application/errors/error_modifier_mm24.py:807: SyntaxWarning: invalid escape sequence '\m' 474s axes_sadd.set_ylabel('$s_{\mathrm{fac}}^2 \\times s_{\mathrm{add}}^2$') 474s Setting up python3-dials (3.22.1+dfsg3-1build1) ... 475s Setting up dials (3.22.1+dfsg3-1build1) ... 475s Processing triggers for libc-bin (2.41-6ubuntu1) ... 476s autopkgtest [12:00:01]: test command1: set -efu ; for py in $(py3versions -r 2>/dev/null) ; do cp -r tests conftest.py "$AUTOPKGTEST_TMP" || true ; cd "$AUTOPKGTEST_TMP" ; echo "Testing dials with $py:" ; DIALS_DATA="$AUTOPKGTEST_TMP" $py -m pytest --verbosity=2 ; done 476s autopkgtest [12:00:01]: test command1: [----------------------- 476s Testing dials with python3.13: 477s ============================= test session starts ============================== 477s platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 -- /usr/bin/python3.13 477s cachedir: .pytest_cache 477s rootdir: /tmp/autopkgtest.eBLL1O/autopkgtest_tmp 477s plugins: dials-data-2.4.0, typeguard-4.4.2, xdist-3.6.1, mock-3.14.0 485s collecting ... collected 1272 items / 10 errors 485s 485s ==================================== ERRORS ==================================== 485s _ ERROR collecting tests/algorithms/indexing/lattice_search/test_lattice_search.py _ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/algorithms/indexing/lattice_search/test_lattice_search.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/algorithms/indexing/lattice_search/test_lattice_search.py:10: in 485s from dials.algorithms.indexing import lattice_search, stills_indexer 485s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/__init__.py:19: in 485s from .pinkindexer import PinkIndexer 485s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/pinkindexer.py:5: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s _______ ERROR collecting tests/algorithms/merging/test_french_wilson.py ________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/algorithms/merging/test_french_wilson.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/algorithms/merging/test_french_wilson.py:8: in 485s from dials.algorithms.merging import french_wilson, merge 485s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 485s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 485s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s ___________ ERROR collecting tests/algorithms/merging/test_merge.py ____________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/algorithms/merging/test_merge.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/algorithms/merging/test_merge.py:8: in 485s from dials.algorithms.merging.merge import ( 485s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 485s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 485s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s ___________ ERROR collecting tests/algorithms/scaling/test_scale.py ____________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/algorithms/scaling/test_scale.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/algorithms/scaling/test_scale.py:22: in 485s from dials.algorithms.scaling.algorithm import ScalingAlgorithm, prepare_input 485s /usr/lib/python3/dist-packages/dials/algorithms/scaling/algorithm.py:37: in 485s from dials.command_line.cosym import cosym 485s /usr/lib/python3/dist-packages/dials/command_line/cosym.py:20: in 485s from dials.command_line.symmetry import ( 485s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 485s from dials.algorithms.merging.merge import prepare_merged_reflection_table 485s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 485s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 485s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s ______________ ERROR collecting tests/command_line/test_cosym.py _______________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/command_line/test_cosym.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/command_line/test_cosym.py:11: in 485s import dials.command_line.cosym as dials_cosym 485s /usr/lib/python3/dist-packages/dials/command_line/cosym.py:20: in 485s from dials.command_line.symmetry import ( 485s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 485s from dials.algorithms.merging.merge import prepare_merged_reflection_table 485s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 485s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 485s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s _________ ERROR collecting tests/command_line/test_damage_analysis.py __________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/command_line/test_damage_analysis.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/command_line/test_damage_analysis.py:12: in 485s from dials.command_line.damage_analysis import PychefRunner, phil_scope, run 485s /usr/lib/python3/dist-packages/dials/command_line/damage_analysis.py:48: in 485s from dials.command_line.symmetry import median_unit_cell 485s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 485s from dials.algorithms.merging.merge import prepare_merged_reflection_table 485s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 485s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 485s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s ______________ ERROR collecting tests/command_line/test_export.py ______________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/command_line/test_export.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/command_line/test_export.py:8: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s ____________ ERROR collecting tests/command_line/test_ssx_index.py _____________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/command_line/test_ssx_index.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/libtbx/utils.py:1613: in __init__ 485s try: module = __import__(module_path) 485s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/__init__.py:19: in 485s from .pinkindexer import PinkIndexer 485s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/pinkindexer.py:5: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s 485s During handling of the above exception, another exception occurred: 485s /usr/lib/python3/dist-packages/libtbx/utils.py:1613: in __init__ 485s try: module = __import__(module_path) 485s /usr/lib/python3/dist-packages/dials/command_line/index.py:57: in 485s phil_scope = iotbx.phil.parse( 485s /usr/lib/python3/dist-packages/iotbx/phil.py:79: in parse 485s return libtbx.phil.parse( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2197: in parse 485s result = result.process_includes( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2004: in process_includes 485s result.append(object.process_includes( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:1994: in process_includes 485s result.extend(process_include_scope( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2037: in process_include_scope 485s imported = import_python_object( 485s /usr/lib/python3/dist-packages/libtbx/utils.py:1615: in __init__ 485s raise ImportError("%sno module %s%s or possibly import errors in " 485s E ImportError: include scope: no module dials.algorithms.indexing.lattice_search (input line 5) or possibly import errors in module dials.algorithms.indexing.lattice_search 485s 485s During handling of the above exception, another exception occurred: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/command_line/test_ssx_index.py:13: in 485s from dials.command_line.ssx_index import run 485s /usr/lib/python3/dist-packages/dials/command_line/ssx_index.py:80: in 485s phil_scope = phil.parse( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2197: in parse 485s result = result.process_includes( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:1994: in process_includes 485s result.extend(process_include_scope( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2037: in process_include_scope 485s imported = import_python_object( 485s /usr/lib/python3/dist-packages/libtbx/utils.py:1615: in __init__ 485s raise ImportError("%sno module %s%s or possibly import errors in " 485s E ImportError: include scope: no module dials.command_line.index (input line 20) or possibly import errors in module dials.command_line.index 485s __________ ERROR collecting tests/command_line/test_stills_process.py __________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/command_line/test_stills_process.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/libtbx/utils.py:1613: in __init__ 485s try: module = __import__(module_path) 485s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/__init__.py:19: in 485s from .pinkindexer import PinkIndexer 485s /usr/lib/python3/dist-packages/dials/algorithms/indexing/lattice_search/pinkindexer.py:5: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s 485s During handling of the above exception, another exception occurred: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/command_line/test_stills_process.py:17: in 485s from dials.command_line.stills_process import Processor, phil_scope 485s /usr/lib/python3/dist-packages/dials/command_line/stills_process.py:343: in 485s phil_scope = parse(control_phil_str + dials_phil_str, process_includes=True).fetch( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2197: in parse 485s result = result.process_includes( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2004: in process_includes 485s result.append(object.process_includes( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:1994: in process_includes 485s result.extend(process_include_scope( 485s /usr/lib/python3/dist-packages/libtbx/phil/__init__.py:2037: in process_include_scope 485s imported = import_python_object( 485s /usr/lib/python3/dist-packages/libtbx/utils.py:1615: in __init__ 485s raise ImportError("%sno module %s%s or possibly import errors in " 485s E ImportError: include scope: no module dials.algorithms.indexing.lattice_search (input line 158) or possibly import errors in module dials.algorithms.indexing.lattice_search 485s _____________ ERROR collecting tests/command_line/test_symmetry.py _____________ 485s ImportError while importing test module '/tmp/autopkgtest.eBLL1O/autopkgtest_tmp/tests/command_line/test_symmetry.py'. 485s Hint: make sure your test modules/packages have valid Python names. 485s Traceback: 485s /usr/lib/python3/dist-packages/_pytest/python.py:493: in importtestmodule 485s mod = import_path( 485s /usr/lib/python3/dist-packages/_pytest/pathlib.py:587: in import_path 485s importlib.import_module(module_name) 485s /usr/lib/python3.13/importlib/__init__.py:88: in import_module 485s return _bootstrap._gcd_import(name[level:], package, level) 485s :1387: in _gcd_import 485s ??? 485s :1360: in _find_and_load 485s ??? 485s :1331: in _find_and_load_unlocked 485s ??? 485s :935: in _load_unlocked 485s ??? 485s /usr/lib/python3/dist-packages/_pytest/assertion/rewrite.py:185: in exec_module 485s exec(co, module.__dict__) 485s tests/command_line/test_symmetry.py:19: in 485s from dials.command_line import symmetry 485s /usr/lib/python3/dist-packages/dials/command_line/symmetry.py:19: in 485s from dials.algorithms.merging.merge import prepare_merged_reflection_table 485s /usr/lib/python3/dist-packages/dials/algorithms/merging/merge.py:49: in 485s from dials.util.export_mtz import MADMergedMTZWriter, MergedMTZWriter 485s /usr/lib/python3/dist-packages/dials/util/export_mtz.py:12: in 485s import gemmi 485s E ModuleNotFoundError: No module named 'gemmi' 485s =============================== warnings summary =============================== 485s ../../../usr/lib/python3/dist-packages/dials/extensions/__init__.py:3 485s /usr/lib/python3/dist-packages/dials/extensions/__init__.py:3: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html 485s import pkg_resources 485s 485s ../../../usr/lib/python3/dist-packages/pytools/persistent_dict.py:52 485s /usr/lib/python3/dist-packages/pytools/persistent_dict.py:52: RecommendedHashNotFoundWarning: Unable to import recommended hash 'siphash24.siphash13', falling back to 'hashlib.sha256'. Run 'python3 -m pip install siphash24' to install the recommended hash. 485s warn("Unable to import recommended hash 'siphash24.siphash13', " 485s 485s -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html 485s =========================== short test summary info ============================ 485s ERROR tests/algorithms/indexing/lattice_search/test_lattice_search.py 485s ERROR tests/algorithms/merging/test_french_wilson.py 485s ERROR tests/algorithms/merging/test_merge.py 485s ERROR tests/algorithms/scaling/test_scale.py 485s ERROR tests/command_line/test_cosym.py 485s ERROR tests/command_line/test_damage_analysis.py 485s ERROR tests/command_line/test_export.py 485s ERROR tests/command_line/test_ssx_index.py 485s ERROR tests/command_line/test_stills_process.py 485s ERROR tests/command_line/test_symmetry.py 485s !!!!!!!!!!!!!!!!!!! Interrupted: 10 errors during collection !!!!!!!!!!!!!!!!!!! 485s ======================== 2 warnings, 10 errors in 8.28s ======================== 486s autopkgtest [12:00:11]: test command1: -----------------------] 487s autopkgtest [12:00:12]: test command1: - - - - - - - - - - results - - - - - - - - - - 487s command1 FAIL non-zero exit status 2 487s autopkgtest [12:00:12]: @@@@@@@@@@@@@@@@@@@@ summary 487s command1 FAIL non-zero exit status 2 504s nova [W] Skipping flock for amd64 504s Creating nova instance adt-questing-amd64-dials-20250506-115205-juju-7f2275-prod-proposed-migration-environment-23-8cf65ba1-5c2e-41e8-8b26-08fe6cac16e1 from image adt/ubuntu-questing-amd64-server-20250506.img (UUID f1864fa2-149c-4e5d-800d-c5107d8a2f35)... 504s nova [W] nova quota exceeded (attempt #0) 504s nova [W] Timed out waiting for b6e0bda1-aaad-4306-a053-f3ae5a1c8378 to get deleted.