0s autopkgtest [18:02:21]: starting date and time: 2025-03-15 18:02:21+0000 0s autopkgtest [18:02:21]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:02:21]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ugik1d_a/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade yaha --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-12.secgroup --name adt-plucky-s390x-yaha-20250315-180221-juju-7f2275-prod-proposed-migration-environment-15-4e8728fe-28f1-493c-93a4-dd802b139a4e --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 134s autopkgtest [18:04:35]: testbed dpkg architecture: s390x 134s autopkgtest [18:04:35]: testbed apt version: 2.9.33 135s autopkgtest [18:04:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 135s autopkgtest [18:04:36]: testbed release detected to be: None 136s autopkgtest [18:04:37]: updating testbed package index (apt update) 136s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 138s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 138s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 139s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 139s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 139s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 139s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 139s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 139s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 139s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 139s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 141s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 141s + lsb_release --codename --short 141s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 141s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 141s Fetched 1073 kB in 4s (287 kB/s) 141s Reading package lists... 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Calculating upgrade...+ RELEASE=plucky 141s + cat 141s + [ plucky != trusty ] 141s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 141s 141s Calculating upgrade... 141s The following packages were automatically installed and are no longer required: 141s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 141s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 141s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 141s linux-tools-6.11.0-8-generic 141s Use 'sudo apt autoremove' to remove them. 141s The following packages will be upgraded: 141s pinentry-curses python3-jinja2 strace 141s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Need to get 652 kB of archives. 141s After this operation, 27.6 kB of additional disk space will be used. 141s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 142s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 142s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 142s Fetched 652 kB in 1s (706 kB/s) 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 143s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 143s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 143s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 143s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 143s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 143s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 143s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 143s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 143s Setting up strace (6.13+ds-1ubuntu1) ... 143s Processing triggers for man-db (2.13.0-1) ... 143s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 143s + /usr/lib/apt/apt-helper analyze-pattern ?true 143s + uname -r 143s + sed s/\./\\./g 143s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 143s + apt list ?obsolete 143s + + cut -d/ -f1 143s tail -n+2 143s + grep -v ^linux-.*6\.14\.0-10-generic.* 144s + obsolete_pkgs=linux-headers-6.11.0-8-generic 144s linux-headers-6.11.0-8 144s linux-modules-6.11.0-8-generic 144s linux-tools-6.11.0-8-generic 144s linux-tools-6.11.0-8 144s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Solving dependencies... 144s The following packages will be REMOVED: 144s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 144s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 144s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 144s linux-tools-6.11.0-8-generic* 144s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 144s After this operation, 167 MB disk space will be freed. 144s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 144s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 144s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 144s Removing libpython3.12t64:s390x (3.12.9-1) ... 144s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 144s Removing libnsl2:s390x (1.3.0-3build3) ... 144s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 144s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 144s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 145s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 145s Processing triggers for libc-bin (2.41-1ubuntu1) ... 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 145s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 145s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 145s + grep -q trusty /etc/lsb-release 145s + [ ! -d /usr/share/doc/unattended-upgrades ] 145s + [ ! -d /usr/share/doc/lxd ] 145s + [ ! -d /usr/share/doc/lxd-client ] 145s + [ ! -d /usr/share/doc/snapd ] 145s + type iptables 145s + cat 145s + chmod 755 /etc/rc.local 145s + . /etc/rc.local 145s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 145s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 145s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 145s + uname -m 145s + [ s390x = ppc64le ] 145s + [ -d /run/systemd/system ] 145s + systemd-detect-virt --quiet --vm 145s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 145s + cat 145s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 145s + echo COMPRESS=lz4 145s autopkgtest [18:04:46]: upgrading testbed (apt dist-upgrade and autopurge) 145s Reading package lists... 146s Building dependency tree... 146s Reading state information... 146s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 146s Starting 2 pkgProblemResolver with broken count: 0 146s Done 146s Entering ResolveByKeep 146s 146s Calculating upgrade... 146s The following packages will be upgraded: 146s libc-bin libc-dev-bin libc6 libc6-dev locales 146s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 9512 kB of archives. 146s After this operation, 8192 B of additional disk space will be used. 146s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 148s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 148s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 150s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 151s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 155s Preconfiguring packages ... 155s Fetched 9512 kB in 9s (1113 kB/s) 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 155s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up libc6:s390x (2.41-1ubuntu2) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 155s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 155s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 155s Setting up libc-bin (2.41-1ubuntu2) ... 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 155s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 155s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 156s Setting up locales (2.41-1ubuntu2) ... 156s Generating locales (this might take a while)... 157s en_US.UTF-8... done 157s Generation complete. 157s Setting up libc-dev-bin (2.41-1ubuntu2) ... 157s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 157s Processing triggers for man-db (2.13.0-1) ... 157s Processing triggers for systemd (257.3-1ubuntu3) ... 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 158s Starting pkgProblemResolver with broken count: 0 158s Starting 2 pkgProblemResolver with broken count: 0 158s Done 159s Solving dependencies... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [18:05:00]: rebooting testbed after setup commands that affected boot 163s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 178s autopkgtest [18:05:19]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 182s autopkgtest [18:05:23]: @@@@@@@@@@@@@@@@@@@@ apt-source yaha 284s Get:1 http://ftpmaster.internal/ubuntu plucky/universe yaha 0.1.83-3 (dsc) [1941 B] 284s Get:2 http://ftpmaster.internal/ubuntu plucky/universe yaha 0.1.83-3 (tar) [104 MB] 284s Get:3 http://ftpmaster.internal/ubuntu plucky/universe yaha 0.1.83-3 (diff) [5124 B] 284s gpgv: Signature made Sun Aug 15 17:24:36 2021 UTC 284s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 284s gpgv: issuer "npatra974@gmail.com" 284s gpgv: Can't check signature: No public key 284s dpkg-source: warning: cannot verify inline signature for ./yaha_0.1.83-3.dsc: no acceptable signature found 285s autopkgtest [18:07:06]: testing package yaha version 0.1.83-3 286s autopkgtest [18:07:07]: build not needed 291s autopkgtest [18:07:12]: test run-unit-test: preparing testbed 291s Reading package lists... 291s Building dependency tree... 291s Reading state information... 291s Starting pkgProblemResolver with broken count: 0 292s Starting 2 pkgProblemResolver with broken count: 0 292s Done 292s The following NEW packages will be installed: 292s yaha 292s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 292s Need to get 42.2 kB of archives. 292s After this operation, 98.3 kB of additional disk space will be used. 292s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x yaha s390x 0.1.83-3 [42.2 kB] 292s Fetched 42.2 kB in 0s (139 kB/s) 292s Selecting previously unselected package yaha. 292s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 292s Preparing to unpack .../yaha_0.1.83-3_s390x.deb ... 292s Unpacking yaha (0.1.83-3) ... 292s Setting up yaha (0.1.83-3) ... 292s Processing triggers for man-db (2.13.0-1) ... 294s autopkgtest [18:07:15]: test run-unit-test: [----------------------- 294s YAHA version 0.1.83 294s Compressing hg18L100E10Q100K.fasta into hg18L100E10Q100K.nib2. 294s Finished compressing hg18L100E10Q100K.nib2, now forming index. 294s Creating index file hg18L100E10Q100K.X13_13_10000S. 295s Randomly Sampling hits for 13-mers that occur more than 10000 times in the reference. 295s 0 13-mers had more than 10000 hits. 295s Index hg18L100E10Q100K.X13_13_10000S created. 295s Number of non-IO page faults: 200177, Number of IO page faults: 0. 295s Operation on hg18L100E10Q100K.nib2 used 0.608S User, 0.384S System, Total: 0.992S in 1S wall time. 295s YAHA version 0.1.83 303s Query setup and hashing took: 0.506S User CPU time (6.51%). 303s Sorting k-mers and forming fragments took: 0.273S User CPU time (3.51%). 303s Collecting fragments into clumps (using graph) took: 0.238S User CPU time (3.06%). 303s Aligning and scoring clumps took: PASS Test 303s 1.898S User CPU time (24.39%). 303s Filtering clumps took: 4.394S User CPU time (56.48%). 303s Printing clumps took: 0.471S User CPU time (6.05%). 303s Number of non-IO page faults: 8638, Number of IO page faults: 0. 303s Operation on hg18L100E05Q100K.fasta used 7.795S User, 0.175S System, Total: 7.970S in 8S wall time. 304s autopkgtest [18:07:25]: test run-unit-test: -----------------------] 304s run-unit-test PASS 304s autopkgtest [18:07:25]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 304s autopkgtest [18:07:25]: @@@@@@@@@@@@@@@@@@@@ summary 304s run-unit-test PASS 314s nova [W] Using flock in prodstack6-s390x 314s Creating nova instance adt-plucky-s390x-yaha-20250315-180221-juju-7f2275-prod-proposed-migration-environment-15-4e8728fe-28f1-493c-93a4-dd802b139a4e from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 314s nova [W] Timed out waiting for df3ac22a-db17-455a-aee4-9d6d1ee592cc to get deleted.