0s autopkgtest [05:24:17]: starting date and time: 2025-02-22 05:24:17+0000 0s autopkgtest [05:24:17]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [05:24:17]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nzcxvlrg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glib2.0 --apt-upgrade wise --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glib2.0/2.83.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-10.secgroup --name adt-plucky-s390x-wise-20250222-052417-juju-7f2275-prod-proposed-migration-environment-20-dd9c5ece-bb22-48be-959d-59d19ee13060 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 103s autopkgtest [05:26:00]: testbed dpkg architecture: s390x 103s autopkgtest [05:26:00]: testbed apt version: 2.9.30ubuntu1 104s autopkgtest [05:26:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s autopkgtest [05:26:01]: testbed release detected to be: None 104s autopkgtest [05:26:01]: updating testbed package index (apt update) 105s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 105s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [508 kB] 105s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [13.5 kB] 105s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [3120 B] 105s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [80.1 kB] 105s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [123 kB] 105s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [760 B] 105s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [423 kB] 106s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [2816 B] 106s Fetched 1265 kB in 1s (1392 kB/s) 106s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Calculating upgrade... 107s Calculating upgrade... 107s The following packages were automatically installed and are no longer required: 107s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 107s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 107s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 107s linux-tools-6.11.0-8-generic 107s Use 'sudo apt autoremove' to remove them. 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Solving dependencies... 108s The following packages will be REMOVED: 108s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 108s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 108s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 108s linux-tools-6.11.0-8-generic* 108s 0 upgraded, 0 newly installed, 9 to remove and 3 not upgraded. 108s After this operation, 167 MB disk space will be freed. 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81030 files and directories currently installed.) 108s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 108s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 108s Removing libpython3.12t64:s390x (3.12.9-1) ... 108s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 108s Removing libnsl2:s390x (1.3.0-3build3) ... 108s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 108s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 108s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 109s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 109s Processing triggers for libc-bin (2.40-4ubuntu1) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55930 files and directories currently installed.) 109s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 109s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 110s autopkgtest [05:26:07]: upgrading testbed (apt dist-upgrade and autopurge) 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 110s Entering ResolveByKeep 110s 111s Calculating upgrade... 111s The following packages will be upgraded: 111s gir1.2-glib-2.0 libglib2.0-0t64 libglib2.0-data 111s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 111s Need to get 1819 kB of archives. 111s After this operation, 1024 B disk space will be freed. 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x gir1.2-glib-2.0 s390x 2.83.4-1 [182 kB] 111s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libglib2.0-0t64 s390x 2.83.4-1 [1584 kB] 111s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libglib2.0-data all 2.83.4-1 [52.9 kB] 112s Fetched 1819 kB in 1s (2858 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55928 files and directories currently installed.) 112s Preparing to unpack .../gir1.2-glib-2.0_2.83.4-1_s390x.deb ... 112s Unpacking gir1.2-glib-2.0:s390x (2.83.4-1) over (2.83.3-2) ... 112s Preparing to unpack .../libglib2.0-0t64_2.83.4-1_s390x.deb ... 112s Unpacking libglib2.0-0t64:s390x (2.83.4-1) over (2.83.3-2) ... 112s Preparing to unpack .../libglib2.0-data_2.83.4-1_all.deb ... 112s Unpacking libglib2.0-data (2.83.4-1) over (2.83.3-2) ... 112s Setting up libglib2.0-0t64:s390x (2.83.4-1) ... 112s No schema files found: doing nothing. 112s Setting up libglib2.0-data (2.83.4-1) ... 112s Setting up gir1.2-glib-2.0:s390x (2.83.4-1) ... 112s Processing triggers for libc-bin (2.40-4ubuntu1) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 112s Solving dependencies... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [05:26:10]: rebooting testbed after setup commands that affected boot 133s autopkgtest [05:26:30]: testbed running kernel: Linux 6.12.0-15-generic #15-Ubuntu SMP Tue Feb 4 15:05:57 UTC 2025 136s autopkgtest [05:26:33]: @@@@@@@@@@@@@@@@@@@@ apt-source wise 139s Get:1 http://ftpmaster.internal/ubuntu plucky/universe wise 2.4.1-25 (dsc) [2305 B] 139s Get:2 http://ftpmaster.internal/ubuntu plucky/universe wise 2.4.1-25 (tar) [3410 kB] 139s Get:3 http://ftpmaster.internal/ubuntu plucky/universe wise 2.4.1-25 (diff) [39.9 kB] 139s gpgv: Signature made Thu Aug 15 10:43:37 2024 UTC 139s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 139s gpgv: issuer "emollier@debian.org" 139s gpgv: Can't check signature: No public key 139s dpkg-source: warning: cannot verify inline signature for ./wise_2.4.1-25.dsc: no acceptable signature found 139s autopkgtest [05:26:36]: testing package wise version 2.4.1-25 140s autopkgtest [05:26:37]: build not needed 142s autopkgtest [05:26:39]: test run-unit-test: preparing testbed 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 143s The following NEW packages will be installed: 143s wise wise-data 143s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 1018 kB of archives. 143s After this operation, 4372 kB of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x wise-data all 2.4.1-25 [83.0 kB] 143s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x wise s390x 2.4.1-25 [935 kB] 143s Fetched 1018 kB in 1s (1836 kB/s) 143s Selecting previously unselected package wise-data. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55928 files and directories currently installed.) 143s Preparing to unpack .../wise-data_2.4.1-25_all.deb ... 143s Unpacking wise-data (2.4.1-25) ... 144s Selecting previously unselected package wise. 144s Preparing to unpack .../wise_2.4.1-25_s390x.deb ... 144s Unpacking wise (2.4.1-25) ... 144s Setting up wise-data (2.4.1-25) ... 144s Setting up wise (2.4.1-25) ... 144s Processing triggers for man-db (2.13.0-1) ... 145s autopkgtest [05:26:42]: test run-unit-test: [----------------------- 145s >>> Doing promoterwise promoterwise standard test 145s >>> Calling [promoterwise -silent pw.human pw.mouse > TEMP-PW] 145s >>> promoterwise ... Failed 145s >>> Doing basic-cdna cdna test case (protein v cdna), all outputs 145s >>> Calling [estwise short.pep short.dna -indel 1e-5 -subs 1e-5 -pretty -para -sum -alb -pal -silent -alg 333 > TEMP] 145s >>> basic-cdna ... Failed 145s >>> Doing basic-genomic genomic test case (protein v genomic), all outputs 145s >>> Calling [genewise short.pep short.dna -pretty -para -genes -sum -cdna -trans -ace -gener -alb -pal -quiet -dymem linear > TEMP] 145s Warning Error 145s Strangely truncated line in fasta file 145s Warning Error 145s Strangely truncated line in fasta file 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:0 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:1 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:2 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:3 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:4 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:5 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:6 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:7 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:8 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:9 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:10 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:11 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:12 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:13 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:14 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:15 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:16 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:17 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:18 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:19 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:20 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:21 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:22 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:23 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:24 (they must 145s be bound between 0:26, returning 0 here 145s Warning Error 145s Attempting to access CompMat with aminoacid numbers 190:25 (they must 145s be bound between 0:26, returning 0 here 145s >>> basic-genomic ... Failed 145s >>> Doing hmm-binary-cdna cdna test case (protein v cdna), all outputs 145s >>> Calling [estwise HMM.binary -indel 1e-5 -subs 1e-5 -hmmer short.dna -pretty -para -sum -alb -pal -quiet -alg 333L > TEMP] 145s Warning Error 145s Strangely truncated line in fasta file 145s FATAL: No support for non-protein, non-nucleic acid alphabets. 145s >>> Bad exit status - 256 (system - ) 145s >>> hmm-binary-cdna ... Failed 145s >>> Doing hmm-wrong-dna HMMs vs DNA sequence when there is no match 145s >>> Calling [genewise wrong.hmm -hmmer short.dna -alg 623 -pal > TEMP] 145s Warning Error 145s Strangely truncated line in fasta file 145s Information 145s In making HSHNCPA1 a genomic sequence, converted 3 bases (0.7%) to 145s N's from non ATGCN 145s GeneWise6 Matrix calculation: [ 0] Cells 0%[ 1000] Cells 3%[ 2000] Cells 6%[ 3000] Cells 9%[ 4000] Cells 12%[ 5000] Cells 15%[ 6000] Cells 18%[ 7000] Cells 21%[ 8000] Cells 24%[ 9000] Cells 27%[ 10000] Cells 30%[ 11000] Cells 33%[ 12000] Cells 36%[ 13000] Cells 39%[ 14000] Cells 42%[ 15000] Cells 45%[ 16000] Cells 48%[ 17000] Cells 51%[ 18000] Cells 54%[ 19000] Cells 57%[ 20000] Cells 60%[ 21000] Cells 63%[ 22000] Cells 66%[ 23000] Cells 69%[ 24000] Cells 73%[ 25000] Cells 76%[ 26000] Cells 79%[ 27000] Cells 82%[ 28000] Cells 85%[ 29000] Cells 88%[ 30000] Cells 91%[ 31000] Cells 94%[ 32000] Cells 97% 145s >>> hmm-wrong-dna ... Passed 145s >>> Doing hmm-wrong-dna-est HMMs vs DNA sequence when there is no match 145s >>> Calling [estwise wrong.hmm -hmmer short.dna -alg 333 -pal > TEMP] 145s Warning Error 145s Strangely truncated line in fasta file 145s Information 145s In making HSHNCPA1 a cdna sequence, converted 3 bases (0.7%) to N's 145s from non ATGCN 145s EstWise3 Matrix calculation: [ 0] Cells 0%[ 1000] Cells 3%[ 2000] Cells 6%[ 3000] Cells 9%[ 4000] Cells 12%[ 5000] Cells 15%[ 6000] Cells 18%[ 7000] Cells 21%[ 8000] Cells 24%[ 9000] Cells 27%[ 10000] Cells 30%[ 11000] Cells 33%[ 12000] Cells 36%[ 13000] Cells 39%[ 14000] Cells 42%[ 15000] Cells 45%[ 16000] Cells 48%[ 17000] Cells 51%[ 18000] Cells 54%[ 19000] Cells 57%[ 20000] Cells 60%[ 21000] Cells 63%[ 22000] Cells 66%[ 23000] Cells 69%[ 24000] Cells 73%[ 25000] Cells 76%[ 26000] Cells 79%[ 27000] Cells 82%[ 28000] Cells 85%[ 29000] Cells 88%[ 30000] Cells 91%[ 31000] Cells 94%[ 32000] Cells 97% 145s EstWise3 Matrix calculation: [ 0] Cells 0%[ 1000] Cells 3%[ 2000] Cells 6%[ 3000] Cells 9%[ 4000] Cells 12%[ 5000] Cells 15%[ 6000] Cells 18%[ 7000] Cells 21%[ 8000] Cells 24%[ 9000] Cells 27%[ 10000] Cells 30%[ 11000] Cells 33%[ 12000] Cells 36%[ 13000] Cells 39%[ 14000] Cells 42%[ 15000] Cells 45%[ 16000] Cells 48%[ 17000] Cells 51%[ 18000] Cells 54%[ 19000] Cells 57%[ 20000] Cells 60%[ 21000] Cells 63%[ 22000] Cells 66%[ 23000] Cells 69%[ 24000] Cells 73%[ 25000] Cells 76%[ 26000] Cells 79%[ 27000] Cells 82%[ 28000] Cells 85%[ 29000] Cells 88%[ 30000] Cells 91%[ 31000] Cells 94%[ 32000] Cells 97% 145s >>> hmm-wrong-dna-est ... Failed 145s >>> Doing hmm-ascii-genomic cdna test case (protein v cdna), all outputs 145s >>> Calling [genewise -init local HMM.ascii -hmmer short.dna -pretty -para -genes -sum -cdna -trans -ace -gener -alb -pal -quiet > TEMP] 145s Warning Error 145s Strangely truncated line in fasta file 145s FATAL: No support for non-protein, non-nucleic acid alphabets. 145s >>> Bad exit status - 256 (system - ) 145s >>> hmm-ascii-genomic ... Failed 145s >>> Doing genewise-db genewisedb hmm vs DNA sequences. Could take a while 145s >>> Calling [genewisedb rrm.HMM -hmmer dna.db -pretty -para -gener -genes -cdna -trans -ace -quiet -init global > TEMP] 145s Warning Error 145s DB searching: just finished [Query Pos: 0] [Target Pos: 5] 145s Strangely truncated line in fasta file 145s Warning Error 145s Strangely truncated line in fasta file 145s >>> genewise-db ... Passed 145s >>> Doing genewise-db-lite genewisedb hmm vs DNA sequences, using GWLITE. Could take a while 145s >>> Calling [genewisedb rrm.HMM -hmmer dna.db -pretty -para -gener -genes -cdna -trans -ace -quiet -init global -alg 6LITE > TEMP] 145s Warning Error 145s DB searching: just finished [Query Pos: 0] [Target Pos: 5] 145s Strangely truncated line in fasta file 145s Warning Error 145s Strangely truncated line in fasta file 145s >>> genewise-db-lite ... Passed 145s >>> Doing estwise-db estwisedb hmm vs DNA sequences. Could take a while 145s >>> Calling [estwisedb -init local rrm.HMM -hmmer dna.db -pretty -para -alb -quiet -alg 333 -aalg 333 > TEMP] 145s Warning Error 145s DB searching: just finished [Query Pos: 0] [Target Pos: 5] 145s Strangely truncated line in fasta file 145s Warning Error 145s Strangely truncated line in fasta file 145s >>> estwise-db ... Passed 145s >>> Doing pswdb Protein smith waterman db search 145s >>> Calling [pswdb road.pep pep.fa -quiet > TEMP ] 145s Warning Error 145s Strangely truncated line in fasta file 145s Warning Error 145s Before any actual search in db searching 145s Out of memory, trying to realloc 1696416052 bytes 145s 145s Fatal Error 145s Before any actual search in db searching 145s Cannot realloc histogram... going to die... sorry! 145s >>> Bad exit status - 512 (system - ) 145s >>> pswdb ... Failed 145s >>> Doing genewisedb-pfam-mode genewisedb designed for Pfam searching 145s >>> Calling [genewisedb -pfam rrm.HMM -dnas short.dna -pretty -para -alb -quiet -alg 623 -aalg 623L > TEMP] 145s Warning Error 145s Strangely truncated line in fasta file 145s >>> genewisedb-pfam-mode ... Failed 145s Tests failed 145s PLEASE: email ewan birney (birney@sanger.ac.uk) with the test.results file 145s 146s autopkgtest [05:26:43]: test run-unit-test: -----------------------] 146s run-unit-test PASS 146s autopkgtest [05:26:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 147s autopkgtest [05:26:44]: @@@@@@@@@@@@@@@@@@@@ summary 147s run-unit-test PASS 164s nova [W] Using flock in prodstack6-s390x 164s Creating nova instance adt-plucky-s390x-wise-20250222-052417-juju-7f2275-prod-proposed-migration-environment-20-dd9c5ece-bb22-48be-959d-59d19ee13060 from image adt/ubuntu-plucky-s390x-server-20250222.img (UUID ae633cda-0dee-481c-9805-d0ef3f3b5166)... 164s nova [W] Timed out waiting for 37d5483f-191b-4eb0-b061-5d62885f976d to get deleted.