0s autopkgtest [19:44:45]: starting date and time: 2025-03-15 19:44:45+0000 0s autopkgtest [19:44:45]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:44:45]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.flq8ws2w/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade wham-align --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-4.secgroup --name adt-plucky-s390x-wham-align-20250315-194445-juju-7f2275-prod-proposed-migration-environment-15-a35a34f4-917c-4d06-b7da-3af9fef9151c --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 133s autopkgtest [19:46:57]: testbed dpkg architecture: s390x 133s autopkgtest [19:46:57]: testbed apt version: 2.9.33 133s autopkgtest [19:46:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 133s autopkgtest [19:46:58]: testbed release detected to be: None 133s autopkgtest [19:46:58]: updating testbed package index (apt update) 134s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 134s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 134s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 134s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 134s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 134s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 134s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 135s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 135s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 135s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 135s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 135s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 135s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 135s Fetched 965 kB in 1s (688 kB/s) 136s Reading package lists... 136s + lsb_release --codename --short 136s + RELEASE=plucky 136s + cat 136s + [ plucky != trusty ] 136s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s Calculating upgrade... 137s Calculating upgrade... 137s The following packages were automatically installed and are no longer required: 137s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 137s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 137s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 137s linux-tools-6.11.0-8-generic 137s Use 'sudo apt autoremove' to remove them. 137s The following packages will be upgraded: 137s pinentry-curses python3-jinja2 strace 137s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Need to get 652 kB of archives. 137s After this operation, 27.6 kB of additional disk space will be used. 137s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 137s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 138s Fetched 652 kB in 1s (806 kB/s) 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 138s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 138s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 138s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 138s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 138s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 138s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 138s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 138s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 138s Setting up strace (6.13+ds-1ubuntu1) ... 138s Processing triggers for man-db (2.13.0-1) ... 139s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 139s + /usr/lib/apt/apt-helper analyze-pattern ?true 139s + uname+ -r 139s sed s/\./\\./g 139s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 139s + apt list ?obsolete 139s + tail -n+2 139s + cut+ grep -v ^linux-.*6\.14\.0-10-generic.* 139s -d/ -f1 139s + obsolete_pkgs=linux-headers-6.11.0-8-generic 139s linux-headers-6.11.0-8 139s linux-modules-6.11.0-8-generic 139s linux-tools-6.11.0-8-generic 139s linux-tools-6.11.0-8 139s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 139s Solving dependencies... 139s The following packages will be REMOVED: 139s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 139s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 139s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 139s linux-tools-6.11.0-8-generic* 140s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 140s After this operation, 167 MB disk space will be freed. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 140s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 140s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 140s Removing libpython3.12t64:s390x (3.12.9-1) ... 140s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 140s Removing libnsl2:s390x (1.3.0-3build3) ... 140s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 140s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 140s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 141s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 141s Processing triggers for libc-bin (2.41-1ubuntu1) ... 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 141s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 141s + grep -q trusty /etc/lsb-release 141s + [ ! -d /usr/share/doc/unattended-upgrades ] 141s + [ ! -d /usr/share/doc/lxd ] 141s + [ ! -d /usr/share/doc/lxd-client ] 141s + [ ! -d /usr/share/doc/snapd ] 141s + type iptables 141s + cat 141s + chmod 755 /etc/rc.local 141s + . /etc/rc.local 141s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 141s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 141s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 141s + uname -m 141s + [ s390x = ppc64le ] 141s + [ -d /run/systemd/system ] 141s + systemd-detect-virt --quiet --vm 141s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 141s + cat 141s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 141s + echo COMPRESS=lz4 141s autopkgtest [19:47:06]: upgrading testbed (apt dist-upgrade and autopurge) 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 142s Entering ResolveByKeep 142s 142s Calculating upgrade... 142s The following packages will be upgraded: 142s libc-bin libc-dev-bin libc6 libc6-dev locales 142s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s Need to get 9512 kB of archives. 142s After this operation, 8192 B of additional disk space will be used. 142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 144s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 144s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 147s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 148s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 152s Preconfiguring packages ... 152s Fetched 9512 kB in 10s (977 kB/s) 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 152s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 152s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 152s Setting up libc6:s390x (2.41-1ubuntu2) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 153s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 153s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 153s Setting up libc-bin (2.41-1ubuntu2) ... 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 153s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 153s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 153s Setting up locales (2.41-1ubuntu2) ... 153s Generating locales (this might take a while)... 154s en_US.UTF-8... done 154s Generation complete. 154s Setting up libc-dev-bin (2.41-1ubuntu2) ... 154s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 154s Processing triggers for man-db (2.13.0-1) ... 155s Processing triggers for systemd (257.3-1ubuntu3) ... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Starting pkgProblemResolver with broken count: 0 156s Starting 2 pkgProblemResolver with broken count: 0 156s Done 156s Solving dependencies... 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s autopkgtest [19:47:21]: rebooting testbed after setup commands that affected boot 174s autopkgtest [19:47:39]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 176s autopkgtest [19:47:41]: @@@@@@@@@@@@@@@@@@@@ apt-source wham-align 178s Get:1 http://ftpmaster.internal/ubuntu plucky/universe wham-align 0.1.5-8 (dsc) [1987 B] 178s Get:2 http://ftpmaster.internal/ubuntu plucky/universe wham-align 0.1.5-8 (tar) [120 kB] 178s Get:3 http://ftpmaster.internal/ubuntu plucky/universe wham-align 0.1.5-8 (diff) [7760 B] 178s gpgv: Signature made Fri Feb 19 07:13:34 2021 UTC 178s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 178s gpgv: issuer "npatra974@gmail.com" 178s gpgv: Can't check signature: No public key 178s dpkg-source: warning: cannot verify inline signature for ./wham-align_0.1.5-8.dsc: no acceptable signature found 178s autopkgtest [19:47:43]: testing package wham-align version 0.1.5-8 179s autopkgtest [19:47:44]: build not needed 179s autopkgtest [19:47:44]: test run-unit-test: preparing testbed 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 0 180s Starting 2 pkgProblemResolver with broken count: 0 180s Done 180s The following NEW packages will be installed: 180s wham-align 180s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 166 kB of archives. 180s After this operation, 688 kB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x wham-align s390x 0.1.5-8 [166 kB] 181s Fetched 166 kB in 0s (377 kB/s) 181s Selecting previously unselected package wham-align. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 181s Preparing to unpack .../wham-align_0.1.5-8_s390x.deb ... 181s Unpacking wham-align (0.1.5-8) ... 181s Setting up wham-align (0.1.5-8) ... 181s Processing triggers for man-db (2.13.0-1) ... 182s autopkgtest [19:47:47]: test run-unit-test: [----------------------- 182s .: 182s reads 182s ref 182s sequences 182s 182s ./reads: 182s sample.fq 182s sample_pair_1.fq 182s sample_pair_2.fq 182s 182s ./ref: 182s README.test_data 182s output1 182s output2 182s output3 182s output4 182s output5 182s output6 182s output7 182s 182s ./sequences: 182s chr1_100k.fa 182s Test 1 182s length: 60, #mismatch: 2, #partition: 0 182s loading reference sequences... 182s Preprocessing reference sequences... 182s preprocessing sequences/chr1_100k.fa... 182s 182s loading reference sequences... 182s [ ] 0% ] 1% ] 2%# ] 3%# ] 4%## ] 5%## ] 6%## ] 7%### ] 8%### ] 9%#### ] 10%#### ] 11%#### ] 12%##### ] 13%##### ] 14%###### ] 15%###### ] 16%###### ] 17%####### ] 18%####### ] 19%######## ] 20%######## ] 21%######## ] 22%######### ] 23%######### ] 24%########## ] 25%########## ] 26%########## ] 27%########### ] 28%########### ] 29%############ ] 30%############ ] 31%############ ] 32%############# ] 33%############# ] 34%############## ] 35%############## ] 36%############## ] 37%############### ] 38%############### ] 39%################ ] 40%################ ] 41%################ ] 42%################# ] 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the reference sequences... 182s optimizer chooses 3 fragments 182s building WHAM index... 182s preprocessing... 182s [ ] 0% ] 1% ] 2%# ] 3%# ] 4%## ] 5%## ] 6%## ] 7%### ] 8%### ] 9%#### ] 10%#### ] 11%#### ] 12%##### ] 13%##### ] 14%###### ] 15%###### ] 16%###### ] 17%####### ] 18%####### ] 19%######## ] 20%######## ] 21%######## ] 22%######### ] 23%######### ] 24%########## ] 25%########## ] 26%########## ] 27%########### ] 28%########### ] 29%############ ] 30%############ ] 31%############ ] 32%############# ] 33%############# ] 34%############## ] 35%############## ] 36%############## ] 37%############### ] 38%############### ] 39%################ ] 40%################ ] 41%################ ] 42%################# ] 43%################# ] 44%################## ] 45%################## ] 46%################## ] 47%################### ] 48%################### ] 49%#################### ] 50%#################### ] 51%#################### ] 52%##################### ] 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92%##################################### ] 93%##################################### ] 94%###################################### ] 95%###################################### ] 96%###################################### ] 97%####################################### ] 98%####################################### ] 99%########################################] 100% 182s saving... 182s building time: 0.013259 sec 182s Complete. 182s Passed 182s 182s Test 2 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0%########## ] 25%#################### ] 50%############################## ] 75%########################################] 100% 182s 182s *************************** 182s Total Align Time: 0.000053 sec 182s Valid Reads: 3/5=60.00% 182s Valid Alignments: 3 182s *************************** 182s 182s see output1 for all valid alignments. 182s Passed 182s 182s Test 3 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0%########## ] 25%#################### ] 50%############################## ] 75%########################################] 100% 182s 182s *************************** 182s Total Align Time: 0.000057 sec 182s Valid Reads: 3/5=60.00% 182s Valid Alignments: 9 182s *************************** 182s 182s see output2 for all valid alignments. 182s Passed 182s 182s Test 4 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0%########## ] 25%#################### ] 50%############################## ] 75%########################################] 100% 182s 182s *************************** 182s Total Align Time: 0.000050 sec 182s Valid Reads: 2/5=40.00% 182s Valid Alignments: 3 182s *************************** 182s 182s see output3 for all valid alignments. 182s Passed 182s 182s Test 5 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0%########## ] 25%#################### ] 50%############################## ] 75%########################################] 100% 182s 182s *************************** 182s Total Align Time: 0.000045 sec 182s Valid Reads: 4/5=80.00% 182s Valid Alignments: 4 182s *************************** 182s 182s see output4 for all valid alignments. 182s Passed 182s 182s Test 6 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0%########## ] 25%#################### ] 50%############################## ] 75%########################################] 100% 182s 182s *************************** 182s Total Align Time: 0.000057 sec 182s Valid Reads: 0/5=0.00% 182s Valid Alignments: 0 182s *************************** 182s 182s see output5 for all valid alignments. 182s Passed 182s 182s Test 7 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0%########## ] 25%#################### ] 50%############################## ] 75%########################################] 100% 182s 182s *************************** 182s Total Align Time: 0.000060 sec 182s Valid Reads: 3/5=60.00% 182s Valid Alignments: 3 182s *************************** 182s 182s see output6 for all valid alignments. 182s Passed 182s 182s Test 8 182s loading short reads... 182s loading WHAM indexes... 182s loading time: 0 sec 182s align reads using indexes... 182s [ ] 0% ] -9223372036854775808% 182s 182s Thread 0: Valid Reads: 1/1, Valid Alignments: 1 182s Thread 1: Valid Reads: 1/1, Valid Alignments: 1 182s Thread 2: Valid Reads: 1/1, Valid Alignments: 1 182s Thread 3: Valid Reads: 0/1, Valid Alignments: 0 182s Thread 4: Valid Reads: 0/1, Valid Alignments: 0 182s Thread 5: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 6: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 7: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 8: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 9: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 10: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 11: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 12: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 13: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 14: Valid Reads: 0/0, Valid Alignments: 0 182s Thread 15: Valid Reads: 0/0, Valid Alignments: 0 182s collect results... 182s 182s *************************** 182s Total Align Time: 0.000102 sec 182s Valid Reads: 3/5=60.00% 182s Valid Alignments: 3 182s *************************** 182s 182s see output7 for all valid alignments. 182s Passed 182s 182s autopkgtest [19:47:47]: test run-unit-test: -----------------------] 183s autopkgtest [19:47:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 183s run-unit-test PASS 183s autopkgtest [19:47:48]: @@@@@@@@@@@@@@@@@@@@ summary 183s run-unit-test PASS 202s nova [W] Using flock in prodstack6-s390x 202s flock: timeout while waiting to get lock 202s Creating nova instance adt-plucky-s390x-wham-align-20250315-194445-juju-7f2275-prod-proposed-migration-environment-15-a35a34f4-917c-4d06-b7da-3af9fef9151c from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 202s nova [W] Timed out waiting for e5fde98b-6fa2-4d80-bb53-dbcd5e0a6fed to get deleted.