0s autopkgtest [19:42:37]: starting date and time: 2025-03-15 19:42:37+0000
  0s autopkgtest [19:42:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [19:42:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.o6uuiwxl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade vt --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-19.secgroup --name adt-plucky-s390x-vt-20250315-194237-juju-7f2275-prod-proposed-migration-environment-2-8479bc02-e919-48e3-a8bc-9741b5879d29 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 99s autopkgtest [19:44:16]: testbed dpkg architecture: s390x
 99s autopkgtest [19:44:16]: testbed apt version: 2.9.33
100s autopkgtest [19:44:17]: @@@@@@@@@@@@@@@@@@@@ test bed setup
100s autopkgtest [19:44:17]: testbed release detected to be: None
100s autopkgtest [19:44:17]: updating testbed package index (apt update)
101s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
101s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
101s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
101s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
101s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
101s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB]
101s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
101s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB]
101s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
101s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
101s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB]
102s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB]
102s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B]
102s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
102s Fetched 965 kB in 1s (966 kB/s)
102s Reading package lists...
103s Reading package lists...
103s Building dependency tree...
103s Reading state information...
103s Calculating upgrade...
103s Calculating upgrade...
103s The following packages were automatically installed and are no longer required:
103s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
103s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
103s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
103s   linux-tools-6.11.0-8-generic
103s Use 'sudo apt autoremove' to remove them.
103s The following packages will be upgraded:
103s   pinentry-curses python3-jinja2 strace
104s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
104s Need to get 652 kB of archives.
104s After this operation, 27.6 kB of additional disk space will be used.
104s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
104s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
104s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
104s Fetched 652 kB in 1s (976 kB/s)
104s (Reading database ... 
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(Reading database ... 75%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
104s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
104s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
105s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
105s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
105s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
105s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
105s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
105s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
105s Setting up strace (6.13+ds-1ubuntu1) ...
105s Processing triggers for man-db (2.13.0-1) ...
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
106s Solving dependencies...
106s The following packages will be REMOVED:
106s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
106s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
106s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
106s   linux-tools-6.11.0-8-generic*
106s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
106s After this operation, 167 MB disk space will be freed.
106s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
106s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
106s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
106s Removing libpython3.12t64:s390x (3.12.9-1) ...
106s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
106s Removing libnsl2:s390x (1.3.0-3build3) ...
106s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
106s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
106s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
107s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
107s Processing triggers for libc-bin (2.41-1ubuntu1) ...
107s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
107s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
107s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
107s autopkgtest [19:44:24]: upgrading testbed (apt dist-upgrade and autopurge)
107s Reading package lists...
107s Building dependency tree...
107s Reading state information...
108s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
108s Starting 2 pkgProblemResolver with broken count: 0
108s Done
108s Entering ResolveByKeep
108s 
108s Calculating upgrade...
108s The following packages will be upgraded:
108s   libc-bin libc-dev-bin libc6 libc6-dev locales
108s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
108s Need to get 9512 kB of archives.
108s After this operation, 8192 B of additional disk space will be used.
108s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
109s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
109s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
109s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
109s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
109s Preconfiguring packages ...
109s Fetched 9512 kB in 1s (9083 kB/s)
109s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
109s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
109s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
109s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
109s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
109s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
110s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
110s Setting up libc6:s390x (2.41-1ubuntu2) ...
110s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
110s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
110s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
110s Setting up libc-bin (2.41-1ubuntu2) ...
110s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
110s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
110s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
110s Setting up locales (2.41-1ubuntu2) ...
110s Generating locales (this might take a while)...
111s   en_US.UTF-8... done
111s Generation complete.
111s Setting up libc-dev-bin (2.41-1ubuntu2) ...
111s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
111s Processing triggers for man-db (2.13.0-1) ...
112s Processing triggers for systemd (257.3-1ubuntu3) ...
113s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s Starting pkgProblemResolver with broken count: 0
113s Starting 2 pkgProblemResolver with broken count: 0
113s Done
113s Solving dependencies...
113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
113s autopkgtest [19:44:30]: rebooting testbed after setup commands that affected boot
133s autopkgtest [19:44:50]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
136s autopkgtest [19:44:53]: @@@@@@@@@@@@@@@@@@@@ apt-source vt
140s Get:1 http://ftpmaster.internal/ubuntu plucky/universe vt 0.57721+ds-3build2 (dsc) [2240 B]
140s Get:2 http://ftpmaster.internal/ubuntu plucky/universe vt 0.57721+ds-3build2 (tar) [18.6 MB]
140s Get:3 http://ftpmaster.internal/ubuntu plucky/universe vt 0.57721+ds-3build2 (diff) [8272 B]
140s gpgv: Signature made Mon Apr  1 08:33:26 2024 UTC
140s gpgv:                using RSA key A089FB36AAFBDAD5ACC1325069F790171A210984
140s gpgv: Can't check signature: No public key
140s dpkg-source: warning: cannot verify inline signature for ./vt_0.57721+ds-3build2.dsc: no acceptable signature found
140s autopkgtest [19:44:57]: testing package vt version 0.57721+ds-3build2
140s autopkgtest [19:44:57]: build not needed
142s autopkgtest [19:44:59]: test basic: preparing testbed
142s Reading package lists...
142s Building dependency tree...
142s Reading state information...
142s Starting pkgProblemResolver with broken count: 0
142s Starting 2 pkgProblemResolver with broken count: 0
142s Done
143s The following NEW packages will be installed:
143s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
143s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
143s   libgomp1 libgraphite2-3 libharfbuzz0b libhts3t64 libhtscodecs2 libice6
143s   libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 libpango-1.0-0
143s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0
143s   libsharpyuv0 libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6
143s   libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
143s   r-base-core unzip vt vt-examples x11-common xdg-utils zip
143s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
143s Need to get 59.6 MB of archives.
143s After this operation, 102 MB of additional disk space will be used.
143s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
143s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
143s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
144s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
144s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
144s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
144s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
144s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
144s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
144s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
144s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
144s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
144s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
144s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
144s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
144s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
144s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
144s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
144s Get:19 http://ftpmaster.internal/ubuntu plucky/universe s390x libhtscodecs2 s390x 1.6.1-2 [91.0 kB]
144s Get:20 http://ftpmaster.internal/ubuntu plucky/universe s390x libhts3t64 s390x 1.21+ds-1 [479 kB]
144s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
144s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
144s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
144s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
144s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
144s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
144s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
144s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
144s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
144s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
144s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
144s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
144s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
144s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
144s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
144s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
144s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
144s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
144s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
144s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
144s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
144s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
144s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
144s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
144s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
144s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
147s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x vt s390x 0.57721+ds-3build2 [640 kB]
147s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x vt-examples all 0.57721+ds-3build2 [18.4 MB]
149s Preconfiguring packages ...
149s Fetched 59.6 MB in 6s (9940 kB/s)
149s Selecting previously unselected package libfreetype6:s390x.
149s (Reading database ... 
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(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
149s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
149s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
149s Selecting previously unselected package fonts-dejavu-mono.
149s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
149s Unpacking fonts-dejavu-mono (2.37-8) ...
149s Selecting previously unselected package fonts-dejavu-core.
149s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
149s Unpacking fonts-dejavu-core (2.37-8) ...
149s Selecting previously unselected package fontconfig-config.
149s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
149s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
149s Selecting previously unselected package libfontconfig1:s390x.
149s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
149s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
149s Selecting previously unselected package fontconfig.
149s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
149s Unpacking fontconfig (2.15.0-2ubuntu1) ...
149s Selecting previously unselected package libblas3:s390x.
149s Preparing to unpack .../06-libblas3_3.12.1-2_s390x.deb ...
149s Unpacking libblas3:s390x (3.12.1-2) ...
149s Selecting previously unselected package libpixman-1-0:s390x.
149s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_s390x.deb ...
149s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
149s Selecting previously unselected package libxcb-render0:s390x.
149s Preparing to unpack .../08-libxcb-render0_1.17.0-2_s390x.deb ...
149s Unpacking libxcb-render0:s390x (1.17.0-2) ...
149s Selecting previously unselected package libxcb-shm0:s390x.
149s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_s390x.deb ...
149s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
149s Selecting previously unselected package libxrender1:s390x.
149s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
149s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
149s Selecting previously unselected package libcairo2:s390x.
149s Preparing to unpack .../11-libcairo2_1.18.2-2_s390x.deb ...
149s Unpacking libcairo2:s390x (1.18.2-2) ...
149s Selecting previously unselected package libdatrie1:s390x.
149s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_s390x.deb ...
149s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
149s Selecting previously unselected package libdeflate0:s390x.
149s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ...
149s Unpacking libdeflate0:s390x (1.23-1) ...
149s Selecting previously unselected package libgfortran5:s390x.
149s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
149s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
149s Selecting previously unselected package libgomp1:s390x.
149s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
149s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
149s Selecting previously unselected package libgraphite2-3:s390x.
149s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
149s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
149s Selecting previously unselected package libharfbuzz0b:s390x.
149s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_s390x.deb ...
149s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
149s Selecting previously unselected package libhtscodecs2:s390x.
149s Preparing to unpack .../18-libhtscodecs2_1.6.1-2_s390x.deb ...
149s Unpacking libhtscodecs2:s390x (1.6.1-2) ...
149s Selecting previously unselected package libhts3t64:s390x.
149s Preparing to unpack .../19-libhts3t64_1.21+ds-1_s390x.deb ...
149s Unpacking libhts3t64:s390x (1.21+ds-1) ...
149s Selecting previously unselected package x11-common.
149s Preparing to unpack .../20-x11-common_1%3a7.7+23ubuntu3_all.deb ...
149s Unpacking x11-common (1:7.7+23ubuntu3) ...
149s Selecting previously unselected package libice6:s390x.
149s Preparing to unpack .../21-libice6_2%3a1.1.1-1_s390x.deb ...
149s Unpacking libice6:s390x (2:1.1.1-1) ...
149s Selecting previously unselected package libjpeg-turbo8:s390x.
149s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
149s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
149s Selecting previously unselected package libjpeg8:s390x.
149s Preparing to unpack .../23-libjpeg8_8c-2ubuntu11_s390x.deb ...
149s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
149s Selecting previously unselected package liblapack3:s390x.
149s Preparing to unpack .../24-liblapack3_3.12.1-2_s390x.deb ...
149s Unpacking liblapack3:s390x (3.12.1-2) ...
149s Selecting previously unselected package libthai-data.
149s Preparing to unpack .../25-libthai-data_0.1.29-2build1_all.deb ...
149s Unpacking libthai-data (0.1.29-2build1) ...
149s Selecting previously unselected package libthai0:s390x.
149s Preparing to unpack .../26-libthai0_0.1.29-2build1_s390x.deb ...
149s Unpacking libthai0:s390x (0.1.29-2build1) ...
149s Selecting previously unselected package libpango-1.0-0:s390x.
149s Preparing to unpack .../27-libpango-1.0-0_1.56.2-1_s390x.deb ...
149s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
150s Selecting previously unselected package libpangoft2-1.0-0:s390x.
150s Preparing to unpack .../28-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
150s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
150s Selecting previously unselected package libpangocairo-1.0-0:s390x.
150s Preparing to unpack .../29-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
150s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
150s Selecting previously unselected package libpaper2:s390x.
150s Preparing to unpack .../30-libpaper2_2.2.5-0.3_s390x.deb ...
150s Unpacking libpaper2:s390x (2.2.5-0.3) ...
150s Selecting previously unselected package libpaper-utils.
150s Preparing to unpack .../31-libpaper-utils_2.2.5-0.3_s390x.deb ...
150s Unpacking libpaper-utils (2.2.5-0.3) ...
150s Selecting previously unselected package libsharpyuv0:s390x.
150s Preparing to unpack .../32-libsharpyuv0_1.5.0-0.1_s390x.deb ...
150s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
150s Selecting previously unselected package libsm6:s390x.
150s Preparing to unpack .../33-libsm6_2%3a1.2.4-1_s390x.deb ...
150s Unpacking libsm6:s390x (2:1.2.4-1) ...
150s Selecting previously unselected package libtcl8.6:s390x.
150s Preparing to unpack .../34-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
150s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
150s Selecting previously unselected package libjbig0:s390x.
150s Preparing to unpack .../35-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
150s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
150s Selecting previously unselected package libwebp7:s390x.
150s Preparing to unpack .../36-libwebp7_1.5.0-0.1_s390x.deb ...
150s Unpacking libwebp7:s390x (1.5.0-0.1) ...
150s Selecting previously unselected package libtiff6:s390x.
150s Preparing to unpack .../37-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
150s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
150s Selecting previously unselected package libxft2:s390x.
150s Preparing to unpack .../38-libxft2_2.3.6-1build1_s390x.deb ...
150s Unpacking libxft2:s390x (2.3.6-1build1) ...
150s Selecting previously unselected package libxss1:s390x.
150s Preparing to unpack .../39-libxss1_1%3a1.2.3-1build3_s390x.deb ...
150s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
150s Selecting previously unselected package libtk8.6:s390x.
150s Preparing to unpack .../40-libtk8.6_8.6.16-1_s390x.deb ...
150s Unpacking libtk8.6:s390x (8.6.16-1) ...
150s Selecting previously unselected package libxt6t64:s390x.
150s Preparing to unpack .../41-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
150s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
150s Selecting previously unselected package zip.
150s Preparing to unpack .../42-zip_3.0-14ubuntu2_s390x.deb ...
150s Unpacking zip (3.0-14ubuntu2) ...
150s Selecting previously unselected package unzip.
150s Preparing to unpack .../43-unzip_6.0-28ubuntu6_s390x.deb ...
150s Unpacking unzip (6.0-28ubuntu6) ...
150s Selecting previously unselected package xdg-utils.
150s Preparing to unpack .../44-xdg-utils_1.2.1-2ubuntu1_all.deb ...
150s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
150s Selecting previously unselected package r-base-core.
150s Preparing to unpack .../45-r-base-core_4.4.3-1_s390x.deb ...
150s Unpacking r-base-core (4.4.3-1) ...
150s Selecting previously unselected package vt.
150s Preparing to unpack .../46-vt_0.57721+ds-3build2_s390x.deb ...
150s Unpacking vt (0.57721+ds-3build2) ...
150s Selecting previously unselected package vt-examples.
150s Preparing to unpack .../47-vt-examples_0.57721+ds-3build2_all.deb ...
150s Unpacking vt-examples (0.57721+ds-3build2) ...
150s Setting up libhtscodecs2:s390x (1.6.1-2) ...
150s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
150s Setting up libpixman-1-0:s390x (0.44.0-3) ...
150s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
150s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
150s Setting up libdatrie1:s390x (0.2.13-3build1) ...
150s Setting up libxcb-render0:s390x (1.17.0-2) ...
150s Setting up unzip (6.0-28ubuntu6) ...
150s Setting up x11-common (1:7.7+23ubuntu3) ...
150s Setting up libdeflate0:s390x (1.23-1) ...
150s Setting up libxcb-shm0:s390x (1.17.0-2) ...
150s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
150s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
150s Setting up zip (3.0-14ubuntu2) ...
150s Setting up libblas3:s390x (3.12.1-2) ...
150s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
150s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
150s Setting up fonts-dejavu-mono (2.37-8) ...
150s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
150s Setting up fonts-dejavu-core (2.37-8) ...
150s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
150s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
150s Setting up libwebp7:s390x (1.5.0-0.1) ...
150s Setting up libhts3t64:s390x (1.21+ds-1) ...
150s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
150s Setting up libthai-data (0.1.29-2build1) ...
150s Setting up vt-examples (0.57721+ds-3build2) ...
150s Setting up libxss1:s390x (1:1.2.3-1build3) ...
150s Setting up libpaper2:s390x (2.2.5-0.3) ...
150s Setting up xdg-utils (1.2.1-2ubuntu1) ...
150s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
150s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
150s Setting up libice6:s390x (2:1.1.1-1) ...
150s Setting up liblapack3:s390x (3.12.1-2) ...
150s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
150s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
150s Setting up libpaper-utils (2.2.5-0.3) ...
150s Setting up libthai0:s390x (0.1.29-2build1) ...
150s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
150s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
150s Setting up libsm6:s390x (2:1.2.4-1) ...
150s Setting up fontconfig (2.15.0-2ubuntu1) ...
152s Regenerating fonts cache... done.
152s Setting up libxft2:s390x (2.3.6-1build1) ...
152s Setting up libtk8.6:s390x (8.6.16-1) ...
152s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
153s Setting up libcairo2:s390x (1.18.2-2) ...
153s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
153s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
153s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
153s Setting up r-base-core (4.4.3-1) ...
153s Creating config file /etc/R/Renviron with new version
153s Setting up vt (0.57721+ds-3build2) ...
153s Processing triggers for man-db (2.13.0-1) ...
153s Processing triggers for install-info (7.1.1-1) ...
153s Processing triggers for libc-bin (2.41-1ubuntu2) ...
155s autopkgtest [19:45:12]: test basic: [-----------------------
155s Help page on http://statgen.sph.umich.edu/wiki/Vt
155s autopkgtest [19:45:12]: test basic: -----------------------]
156s autopkgtest [19:45:13]: test basic:  - - - - - - - - - - results - - - - - - - - - -
156s basic                PASS
156s autopkgtest [19:45:13]: test run-unit-test: preparing testbed
156s Reading package lists...
156s Building dependency tree...
156s Reading state information...
157s Starting pkgProblemResolver with broken count: 0
157s Starting 2 pkgProblemResolver with broken count: 0
157s Done
157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
158s autopkgtest [19:45:15]: test run-unit-test: [-----------------------
158s ++++++++++++++++++++++
158s Tests for vt normalize
158s ++++++++++++++++++++++
158s testing normalize
158s              output VCF file : ok
158s +++++++++++++++++++++++++++++++
158s Tests for vt decompose_blocksub
158s +++++++++++++++++++++++++++++++
158s              output logs     : ok
158s testing decompose_blocksub of even-length blocks
158s              output VCF file : ok
158s              output logs     : ok
158s testing decompose_blocksub with alignment
158s              output VCF file : ok
158s              output logs     : ok
158s testing decompose_blocksub of phased even-length blocks
158s ++++++++++++++++++++++
158s Tests for vt decompose
158s ++++++++++++++++++++++
158s              output VCF file : ok
158s              output logs     : ok
158s testing decompose for a triallelic variant
158s              output VCF file : ok
158s              output logs     : ok
158s 
158s Passed tests : 5 / 5
158s autopkgtest [19:45:15]: test run-unit-test: -----------------------]
159s autopkgtest [19:45:16]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
159s run-unit-test        PASS
159s autopkgtest [19:45:16]: @@@@@@@@@@@@@@@@@@@@ summary
159s basic                PASS
159s run-unit-test        PASS
177s nova [W] Using flock in prodstack6-s390x
177s flock: timeout while waiting to get lock
177s Creating nova instance adt-plucky-s390x-vt-20250315-194237-juju-7f2275-prod-proposed-migration-environment-2-8479bc02-e919-48e3-a8bc-9741b5879d29 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
177s nova [W] Timed out waiting for 925f30ce-8a1f-4f6b-a0b9-6cca9ab31c38 to get deleted.