0s autopkgtest [19:41:48]: starting date and time: 2025-03-15 19:41:48+0000 0s autopkgtest [19:41:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:41:48]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qhkwyqau/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade vmatch --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-14.secgroup --name adt-plucky-s390x-vmatch-20250315-194147-juju-7f2275-prod-proposed-migration-environment-20-0f1f0ec0-3cbf-4360-9a88-f0d105f48583 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 129s autopkgtest [19:43:57]: testbed dpkg architecture: s390x 130s autopkgtest [19:43:58]: testbed apt version: 2.9.33 130s autopkgtest [19:43:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup 130s autopkgtest [19:43:58]: testbed release detected to be: None 131s autopkgtest [19:43:59]: updating testbed package index (apt update) 131s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 131s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 132s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 132s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 132s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 132s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 132s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 132s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 132s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 132s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 132s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 132s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 132s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 132s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 133s Fetched 965 kB in 1s (645 kB/s) 133s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 134s Calculating upgrade... 134s Calculating upgrade... 134s The following packages were automatically installed and are no longer required: 134s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 134s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 134s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 134s linux-tools-6.11.0-8-generic 134s Use 'sudo apt autoremove' to remove them. 134s The following packages will be upgraded: 134s pinentry-curses python3-jinja2 strace 134s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 652 kB of archives. 134s After this operation, 27.6 kB of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 135s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 135s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 136s Fetched 652 kB in 1s (646 kB/s) 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 136s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 136s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 136s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 136s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 136s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 136s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 136s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 136s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 136s Setting up strace (6.13+ds-1ubuntu1) ... 136s Processing triggers for man-db (2.13.0-1) ... 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Solving dependencies... 137s The following packages will be REMOVED: 137s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 137s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 137s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 137s linux-tools-6.11.0-8-generic* 137s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 137s After this operation, 167 MB disk space will be freed. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 137s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 137s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 137s Removing libpython3.12t64:s390x (3.12.9-1) ... 137s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 137s Removing libnsl2:s390x (1.3.0-3build3) ... 137s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 137s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 137s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 138s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 138s Processing triggers for libc-bin (2.41-1ubuntu1) ... 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 138s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 138s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 138s autopkgtest [19:44:06]: upgrading testbed (apt dist-upgrade and autopurge) 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 139s Starting 2 pkgProblemResolver with broken count: 0 139s Done 139s Entering ResolveByKeep 139s 139s Calculating upgrade... 139s The following packages will be upgraded: 139s libc-bin libc-dev-bin libc6 libc6-dev locales 139s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 9512 kB of archives. 139s After this operation, 8192 B of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 141s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 141s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 144s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 144s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 148s Preconfiguring packages ... 149s Fetched 9512 kB in 9s (1103 kB/s) 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 149s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 149s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 149s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 149s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Setting up libc6:s390x (2.41-1ubuntu2) ... 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 149s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 149s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Setting up libc-bin (2.41-1ubuntu2) ... 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 149s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 149s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 149s Setting up locales (2.41-1ubuntu2) ... 149s Generating locales (this might take a while)... 150s en_US.UTF-8... done 150s Generation complete. 150s Setting up libc-dev-bin (2.41-1ubuntu2) ... 150s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 150s Processing triggers for man-db (2.13.0-1) ... 150s Processing triggers for systemd (257.3-1ubuntu3) ... 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s Solving dependencies... 152s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 152s autopkgtest [19:44:20]: rebooting testbed after setup commands that affected boot 170s autopkgtest [19:44:38]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 173s autopkgtest [19:44:41]: @@@@@@@@@@@@@@@@@@@@ apt-source vmatch 176s Get:1 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (dsc) [2074 B] 176s Get:2 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (tar) [2121 kB] 176s Get:3 http://ftpmaster.internal/ubuntu plucky/universe vmatch 2.3.1+dfsg-9 (diff) [79.6 kB] 176s gpgv: Signature made Fri Dec 15 12:41:29 2023 UTC 176s gpgv: using RSA key 5B34BA5AAB5507E903426E85E8D37AE2F09F4872 176s gpgv: Can't check signature: No public key 176s dpkg-source: warning: cannot verify inline signature for ./vmatch_2.3.1+dfsg-9.dsc: no acceptable signature found 177s autopkgtest [19:44:45]: testing package vmatch version 2.3.1+dfsg-9 177s autopkgtest [19:44:45]: build not needed 179s autopkgtest [19:44:47]: test run-example: preparing testbed 179s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 179s The following NEW packages will be installed: 179s libvmatch-dev vmatch 179s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 1242 kB of archives. 179s After this operation, 6676 kB of additional disk space will be used. 179s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x libvmatch-dev s390x 2.3.1+dfsg-9 [780 kB] 180s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x vmatch s390x 2.3.1+dfsg-9 [462 kB] 181s Fetched 1242 kB in 1s (1060 kB/s) 181s Selecting previously unselected package libvmatch-dev. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 181s Preparing to unpack .../libvmatch-dev_2.3.1+dfsg-9_s390x.deb ... 181s Unpacking libvmatch-dev (2.3.1+dfsg-9) ... 181s Selecting previously unselected package vmatch. 181s Preparing to unpack .../vmatch_2.3.1+dfsg-9_s390x.deb ... 181s Unpacking vmatch (2.3.1+dfsg-9) ... 181s Setting up libvmatch-dev (2.3.1+dfsg-9) ... 181s Setting up vmatch (2.3.1+dfsg-9) ... 181s Processing triggers for man-db (2.13.0-1) ... 183s autopkgtest [19:44:51]: test run-example: [----------------------- 183s reading file "U89959_genomic.fas" 183s for this input size and alphabet size, the maximal prefixlength 183s (argument of option -pl) is 7, 183s the recommended prefixlength is 6 183s total length of sequences: 106973 183s alphabet "aAcCgGtTuUnsywrkvbdhmNSYWRKVBDHM" (size 32) mapped to "acgtn" (size 5) 183s create file "U89959_genomic.fas.tis" 183s create file "U89959_genomic.fas.ois" 183s create file "U89959_genomic.fas.des" 183s create file "U89959_genomic.fas.sds" 183s create file "U89959_genomic.fas.lcp" 183s initializing data structures 183s sorting suffixes according to prefix of length 6 183s sorting all buckets 183s create file "U89959_genomic.fas.llv" 183s create file "U89959_genomic.fas.bck" 183s create file "U89959_genomic.fas.suf" 183s create file "U89959_genomic.fas.sti1" 183s create file "U89959_genomic.fas.bwt" 183s create file "U89959_genomic.fas.prj" 183s create file "U89959_genomic.fas.al1" 183s create file "U89959_genomic.fas.skp" 183s overall space peak: main=1.15 MB (11.24 bytes/symbol), secondary=0.21 MB 183s autopkgtest [19:44:51]: test run-example: -----------------------] 184s autopkgtest [19:44:52]: test run-example: - - - - - - - - - - results - - - - - - - - - - 184s run-example PASS 184s autopkgtest [19:44:52]: @@@@@@@@@@@@@@@@@@@@ summary 184s run-example PASS 201s nova [W] Using flock in prodstack6-s390x 201s flock: timeout while waiting to get lock 201s Creating nova instance adt-plucky-s390x-vmatch-20250315-194147-juju-7f2275-prod-proposed-migration-environment-20-0f1f0ec0-3cbf-4360-9a88-f0d105f48583 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 201s nova [W] Timed out waiting for 916f0128-c1ee-481c-91fd-8a96d20cbf40 to get deleted.