0s autopkgtest [19:35:26]: starting date and time: 2025-03-15 19:35:26+0000
  0s autopkgtest [19:35:26]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [19:35:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.0kzd2cqk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade uc-echo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-20.secgroup --name adt-plucky-s390x-uc-echo-20250315-193526-juju-7f2275-prod-proposed-migration-environment-2-c1dcbdd7-5dcf-4db1-ac49-e2d01eea7593 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
125s autopkgtest [19:37:31]: testbed dpkg architecture: s390x
126s autopkgtest [19:37:32]: testbed apt version: 2.9.33
126s autopkgtest [19:37:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup
126s autopkgtest [19:37:32]: testbed release detected to be: None
127s autopkgtest [19:37:33]: updating testbed package index (apt update)
127s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
128s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
128s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
128s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
128s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
128s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
128s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB]
128s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB]
128s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
128s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
128s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB]
128s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB]
128s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B]
128s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
129s Fetched 965 kB in 1s (737 kB/s)
129s Reading package lists...
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
130s Calculating upgrade...
130s Calculating upgrade...
130s The following packages were automatically installed and are no longer required:
130s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
130s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
130s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
130s   linux-tools-6.11.0-8-generic
130s Use 'sudo apt autoremove' to remove them.
130s The following packages will be upgraded:
130s   pinentry-curses python3-jinja2 strace
130s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
130s Need to get 652 kB of archives.
130s After this operation, 27.6 kB of additional disk space will be used.
130s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
131s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
131s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
131s Fetched 652 kB in 1s (708 kB/s)
131s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
131s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
131s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
131s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
131s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
132s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
132s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
132s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
132s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
132s Setting up strace (6.13+ds-1ubuntu1) ...
132s Processing triggers for man-db (2.13.0-1) ...
132s Reading package lists...
132s Building dependency tree...
132s Reading state information...
132s Solving dependencies...
133s The following packages will be REMOVED:
133s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
133s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
133s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
133s   linux-tools-6.11.0-8-generic*
133s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
133s After this operation, 167 MB disk space will be freed.
133s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
133s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
133s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
133s Removing libpython3.12t64:s390x (3.12.9-1) ...
133s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
133s Removing libnsl2:s390x (1.3.0-3build3) ...
133s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
133s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
133s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
134s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
134s Processing triggers for libc-bin (2.41-1ubuntu1) ...
134s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
134s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
134s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
134s autopkgtest [19:37:40]: upgrading testbed (apt dist-upgrade and autopurge)
134s Reading package lists...
134s Building dependency tree...
134s Reading state information...
134s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
134s Starting 2 pkgProblemResolver with broken count: 0
134s Done
135s Entering ResolveByKeep
135s 
135s Calculating upgrade...
135s The following packages will be upgraded:
135s   libc-bin libc-dev-bin libc6 libc6-dev locales
135s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
135s Need to get 9512 kB of archives.
135s After this operation, 8192 B of additional disk space will be used.
135s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
137s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
137s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
140s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
141s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
145s Preconfiguring packages ...
145s Fetched 9512 kB in 10s (971 kB/s)
145s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
145s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
145s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
145s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
145s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Setting up libc6:s390x (2.41-1ubuntu2) ...
145s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
145s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
145s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
145s Setting up libc-bin (2.41-1ubuntu2) ...
145s (Reading database ... 
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(Reading database ... 70%
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
145s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
145s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
146s Setting up locales (2.41-1ubuntu2) ...
146s Generating locales (this might take a while)...
147s   en_US.UTF-8... done
147s Generation complete.
147s Setting up libc-dev-bin (2.41-1ubuntu2) ...
147s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
147s Processing triggers for man-db (2.13.0-1) ...
147s Processing triggers for systemd (257.3-1ubuntu3) ...
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
149s Starting pkgProblemResolver with broken count: 0
149s Starting 2 pkgProblemResolver with broken count: 0
149s Done
149s Solving dependencies...
149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
149s autopkgtest [19:37:55]: rebooting testbed after setup commands that affected boot
168s autopkgtest [19:38:14]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
171s autopkgtest [19:38:17]: @@@@@@@@@@@@@@@@@@@@ apt-source uc-echo
173s Get:1 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (dsc) [2113 B]
173s Get:2 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (tar) [461 kB]
173s Get:3 http://ftpmaster.internal/ubuntu plucky/universe uc-echo 1.12-19 (diff) [8988 B]
173s gpgv: Signature made Wed Jun  5 12:30:13 2024 UTC
173s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
173s gpgv:                issuer "tille@debian.org"
173s gpgv: Can't check signature: No public key
173s dpkg-source: warning: cannot verify inline signature for ./uc-echo_1.12-19.dsc: no acceptable signature found
173s autopkgtest [19:38:19]: testing package uc-echo version 1.12-19
173s autopkgtest [19:38:19]: build not needed
174s autopkgtest [19:38:20]: test runtest: preparing testbed
174s Reading package lists...
174s Building dependency tree...
174s Reading state information...
174s Starting pkgProblemResolver with broken count: 0
174s Starting 2 pkgProblemResolver with broken count: 0
174s Done
175s The following NEW packages will be installed:
175s   libblas3 libgfortran5 liblapack3 liblbfgsb0 python3-decorator python3-numpy
175s   python3-numpy-dev python3-scipy uc-echo
175s 0 upgraded, 9 newly installed, 0 to remove and 0 not upgraded.
175s Need to get 26.5 MB of archives.
175s After this operation, 106 MB of additional disk space will be used.
175s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy-dev s390x 1:2.2.3+ds-5 [147 kB]
175s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
175s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
176s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
178s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:2.2.3+ds-5 [4396 kB]
182s Get:6 http://ftpmaster.internal/ubuntu plucky/universe s390x liblbfgsb0 s390x 3.0+dfsg.4-1build1 [32.4 kB]
182s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x python3-decorator all 5.1.1-5 [10.1 kB]
182s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-scipy s390x 1.14.1-4ubuntu2 [18.0 MB]
196s Get:9 http://ftpmaster.internal/ubuntu plucky/universe s390x uc-echo s390x 1.12-19 [83.5 kB]
196s Fetched 26.5 MB in 21s (1251 kB/s)
196s Selecting previously unselected package python3-numpy-dev:s390x.
196s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
196s Preparing to unpack .../0-python3-numpy-dev_1%3a2.2.3+ds-5_s390x.deb ...
196s Unpacking python3-numpy-dev:s390x (1:2.2.3+ds-5) ...
196s Selecting previously unselected package libblas3:s390x.
196s Preparing to unpack .../1-libblas3_3.12.1-2_s390x.deb ...
196s Unpacking libblas3:s390x (3.12.1-2) ...
196s Selecting previously unselected package libgfortran5:s390x.
196s Preparing to unpack .../2-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
196s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
196s Selecting previously unselected package liblapack3:s390x.
196s Preparing to unpack .../3-liblapack3_3.12.1-2_s390x.deb ...
196s Unpacking liblapack3:s390x (3.12.1-2) ...
196s Selecting previously unselected package python3-numpy.
196s Preparing to unpack .../4-python3-numpy_1%3a2.2.3+ds-5_s390x.deb ...
196s Unpacking python3-numpy (1:2.2.3+ds-5) ...
196s Selecting previously unselected package liblbfgsb0:s390x.
196s Preparing to unpack .../5-liblbfgsb0_3.0+dfsg.4-1build1_s390x.deb ...
196s Unpacking liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
196s Selecting previously unselected package python3-decorator.
196s Preparing to unpack .../6-python3-decorator_5.1.1-5_all.deb ...
196s Unpacking python3-decorator (5.1.1-5) ...
196s Selecting previously unselected package python3-scipy.
196s Preparing to unpack .../7-python3-scipy_1.14.1-4ubuntu2_s390x.deb ...
196s Unpacking python3-scipy (1.14.1-4ubuntu2) ...
197s Selecting previously unselected package uc-echo.
197s Preparing to unpack .../8-uc-echo_1.12-19_s390x.deb ...
197s Unpacking uc-echo (1.12-19) ...
197s Setting up python3-decorator (5.1.1-5) ...
197s Setting up libblas3:s390x (3.12.1-2) ...
197s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
197s Setting up python3-numpy-dev:s390x (1:2.2.3+ds-5) ...
197s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
197s Setting up liblapack3:s390x (3.12.1-2) ...
197s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
197s Setting up python3-numpy (1:2.2.3+ds-5) ...
198s Setting up liblbfgsb0:s390x (3.0+dfsg.4-1build1) ...
198s Setting up python3-scipy (1.14.1-4ubuntu2) ...
200s Setting up uc-echo (1.12-19) ...
200s Processing triggers for man-db (2.13.0-1) ...
201s Processing triggers for libc-bin (2.41-1ubuntu2) ...
202s autopkgtest [19:38:48]: test runtest: [-----------------------
202s Test for sample data
219s 2025_03_15-19_38_48: Run with parameters: ['/usr/lib/uc-echo/ErrorCorrection.py', '-o', 'output/sample_data.fastq', 'sample_data.txt']
219s 
219s 2025_03_15-19_38_48: Temporary Directory: /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/
219s 
219s 2025_03_15-19_38_48: Starting...
219s 
219s 2025_03_15-19_38_48: Data preprocessing complete.
219s 
219s 2025_03_15-19_38_48: Use parameter k = 15
219s 
219s 2025_03_15-19_38_48: Overlap search range: [38, 50]
219s 
219s 2025_03_15-19_38_48: Error tolerance search range: [0.050000, 0.150000]
219s 
219s 2025_03_15-19_38_48: Total number of hash files: 1
219s 
219s 2025_03_15-19_38_48: /usr/lib/uc-echo/hashing -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -nhash 1 -ihash_st 0 -ihash_ed 1 -K 15 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0
219s 
219s b''
219s 2025_03_15-19_38_49: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/0.hash /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/t_1_0.hash
219s 
219s b''
219s 2025_03_15-19_38_49: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/0.index /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/t_1_0.index
219s 
219s b''
219s 2025_03_15-19_38_49: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/t_1_0.hash /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash
219s 
219s b''
219s 2025_03_15-19_38_49: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/t_1_0.index /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
219s 
219s b''
219s 2025_03_15-19_38_49: /usr/lib/uc-echo/NeighborJoinParam -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 196024 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
219s 
219s b''
219s 2025_03_15-19_38_51: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_1_0_0_0.list
219s 
219s b''
219s 2025_03_15-19_38_51: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_1_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list
219s 
219s b''
219s 2025_03_15-19_38_51: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_38_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_52: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_38_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_53: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_38_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_53: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_40_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_54: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_40_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_55: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_40_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_56: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_42_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_57: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_42_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_58: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_42_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_58: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_38_59: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_00: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_01: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_46_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_02: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_46_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_03: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_46_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_03: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_48_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_04: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_48_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
219s 
219s b''
219s 2025_03_15-19_39_05: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_48_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_06: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_50_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_06: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_50_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_07: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_50_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(38), np.float64(0.05)), (np.float64(0.18561481981238556), 9))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(38), np.float64(0.1)), (np.float64(0.08050669238864594), 10))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(38), np.float64(0.15000000000000002)), (np.float64(0.0674653484541072), 10))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(40), np.float64(0.05)), (np.float64(0.16540680314588493), 9))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(40), np.float64(0.1)), (np.float64(0.07524134994153966), 10))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(40), np.float64(0.15000000000000002)), (np.float64(0.04913554862227255), 10))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(42), np.float64(0.05)), (np.float64(0.17318357548530208), 8))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(42), np.float64(0.1)), (np.float64(0.07287133664741463), 9))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(42), np.float64(0.15000000000000002)), (np.float64(0.06951233466640981), 9))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(44), np.float64(0.05)), (np.float64(0.15190234890424495), 8))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(44), np.float64(0.1)), (np.float64(0.07362103430296754), 9))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(44), np.float64(0.15000000000000002)), (np.float64(0.041210786504705506), 9))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(46), np.float64(0.05)), (np.float64(0.1661747116608638), 7))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(46), np.float64(0.1)), (np.float64(0.07082303987206366), 8))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(46), np.float64(0.15000000000000002)), (np.float64(0.06701208244754069), 8))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(48), np.float64(0.05)), (np.float64(0.15221559427752018), 7))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(48), np.float64(0.1)), (np.float64(0.07360013388104585), 8))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(48), np.float64(0.15000000000000002)), (np.float64(0.04259444984456105), 8))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(50), np.float64(0.05)), (np.float64(0.15215983254603388), 7))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(50), np.float64(0.1)), (np.float64(0.06593337756230981), 7))
229s 
229s 2025_03_15-19_39_08: Total Variation: ((np.int64(50), np.float64(0.15000000000000002)), (np.float64(0.064772801292618), 7))
229s 
229s 2025_03_15-19_39_08: Estimated Coverage: 9
229s 
229s 2025_03_15-19_39_08: param: h=44 e=0.15000000000000002 cov=9 max_cov=24 min_cov=0
229s 
229s 2025_03_15-19_39_08: h, e, mu selection complete.
229s 
229s 2025_03_15-19_39_08: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_09: EM Iteration 0: relative error = 0.000235350798576072
229s 
229s 2025_03_15-19_39_09: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_10: EM Iteration 1: relative error = 6.577855579460539e-06
229s 
229s 2025_03_15-19_39_10: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_11: EM Iteration 2: relative error = 2.591177699282294e-07
229s 
229s 2025_03_15-19_39_11: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_12: EM Iteration 3: relative error = 2.5646124798903106e-08
229s 
229s 2025_03_15-19_39_12: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_13: EM Iteration 4: relative error = 1.1565933113109722e-09
229s 
229s 2025_03_15-19_39_13: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_13: EM Iteration 5: relative error = 1.2105262006751484e-10
229s 
229s 2025_03_15-19_39_13: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
229s 
229s b''
229s 2025_03_15-19_39_14: EM Iteration 6: relative error = 1.5789472182111667e-11
229s 
229s 2025_03_15-19_39_14: cp /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confmat_0_44_0.150000.txt /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confMatEst.txt
229s 
229s b''
229s 2025_03_15-19_39_14: EM complete.
229s 
229s 2025_03_15-19_39_14: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 24503 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
229s 
229s b''
229s 2025_03_15-19_39_15: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 1_0_0 -ihash_st 24503 -ihash_ed 49006 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_15: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 2_0_0 -ihash_st 49006 -ihash_ed 73509 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_16: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 3_0_0 -ihash_st 73509 -ihash_ed 98012 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_16: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 4_0_0 -ihash_st 98012 -ihash_ed 122515 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_16: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 5_0_0 -ihash_st 122515 -ihash_ed 147018 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_17: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 6_0_0 -ihash_st 147018 -ihash_ed 171521 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_17: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 7_0_0 -ihash_st 171521 -ihash_ed 196024 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/all.index
234s 
234s b''
234s 2025_03_15-19_39_18: /usr/lib/uc-echo/NeighborMerge -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 1_0_0_0 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_1_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_2_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_3_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_4_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_5_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_6_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_7_0_0.list
234s 
234s b''
234s 2025_03_15-19_39_19: rm /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_1_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_2_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_3_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_4_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_5_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_6_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_7_0_0.list
234s 
234s b''
234s 2025_03_15-19_39_19: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_1_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list
234s 
234s b''
234s 2025_03_15-19_39_19: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/confMatEst.txt -max_cov 24 -min_cov 0 -cov 9
234s 
234s b''
234s 2025_03_15-19_39_19: Deleting Neighbor Files...
234s 
234s 2025_03_15-19_39_19: find /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmp1rg593ux/ -name neighbor* -delete
234s 
234s b''
234s 2025_03_15-19_39_19: Error correction complete.
234s 
234s 2025_03_15-19_39_19: Removing Temporary Directory...
234s 
234s 2025_03_15-19_39_19: Output is in file: output/sample_data.fastq
234s 
234s 2025_03_15-19_39_19: Total running time (h:m:s): 0:00:31.333774
234s 
234s 2025_03_15-19_39_19: End...
234s 
234s Run with 4 threads
243s 2025_03_15-19_39_20: Run with parameters: ['/usr/lib/uc-echo/ErrorCorrection.py', '--ncpu', '4', '-o', 'output/sample_data.fastq', 'sample_data.txt']
243s 
243s 2025_03_15-19_39_20: Temporary Directory: /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/
243s 
243s 2025_03_15-19_39_20: Starting...
243s 
243s 2025_03_15-19_39_20: Data preprocessing complete.
243s 
243s 2025_03_15-19_39_20: Use parameter k = 15
243s 
243s 2025_03_15-19_39_20: Overlap search range: [38, 50]
243s 
243s 2025_03_15-19_39_20: Error tolerance search range: [0.050000, 0.150000]
243s 
243s 2025_03_15-19_39_20: Total number of hash files: 1
243s 
243s 2025_03_15-19_39_20: /usr/lib/uc-echo/hashing -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -nhash 1 -ihash_st 0 -ihash_ed 1 -K 15 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0
243s 
243s b''
243s 2025_03_15-19_39_21: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/0.hash /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/t_1_0.hash
243s 
243s b''
243s 2025_03_15-19_39_21: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/0.index /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/t_1_0.index
243s 
243s b''
243s 2025_03_15-19_39_21: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/t_1_0.hash /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash
243s 
243s b''
243s 2025_03_15-19_39_21: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/t_1_0.index /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
243s 
243s b''
243s 2025_03_15-19_39_21: /usr/lib/uc-echo/NeighborJoinParam -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 196024 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
243s 
243s b''
243s 2025_03_15-19_39_23: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_1_0_0_0.list
243s 
243s b''
243s 2025_03_15-19_39_23: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_1_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list
243s 
243s b''
243s 2025_03_15-19_39_23: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_38_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s 2025_03_15-19_39_23: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_38_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s 2025_03_15-19_39_23: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 38 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_38_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s 2025_03_15-19_39_23: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_40_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_24: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_40_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_24: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 40 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_40_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_24: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_42_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_24: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_42_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_26: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 42 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_42_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_26: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_26: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_26: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_27: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_46_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_28: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_46_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_28: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 46 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_46_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_28: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_48_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_29: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_48_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
243s 
243s b''
243s 2025_03_15-19_39_29: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 48 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_48_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_29: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.050000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_50_0.050000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_29: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.100000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_50_0.100000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_31: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 50 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_50_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -save_stats 1
252s 
252s b''
252s b''
252s b''
252s b''
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(38), np.float64(0.05)), (np.float64(0.18561481981238556), 9))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(38), np.float64(0.1)), (np.float64(0.08050669238864594), 10))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(38), np.float64(0.15000000000000002)), (np.float64(0.0674653484541072), 10))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(40), np.float64(0.05)), (np.float64(0.16540680314588493), 9))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(40), np.float64(0.1)), (np.float64(0.07524134994153966), 10))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(40), np.float64(0.15000000000000002)), (np.float64(0.04913554862227255), 10))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(42), np.float64(0.05)), (np.float64(0.17318357548530208), 8))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(42), np.float64(0.1)), (np.float64(0.07287133664741463), 9))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(42), np.float64(0.15000000000000002)), (np.float64(0.06951233466640981), 9))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(44), np.float64(0.05)), (np.float64(0.15190234890424495), 8))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(44), np.float64(0.1)), (np.float64(0.07362103430296754), 9))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(44), np.float64(0.15000000000000002)), (np.float64(0.041210786504705506), 9))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(46), np.float64(0.05)), (np.float64(0.1661747116608638), 7))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(46), np.float64(0.1)), (np.float64(0.07082303987206366), 8))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(46), np.float64(0.15000000000000002)), (np.float64(0.06701208244754069), 8))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(48), np.float64(0.05)), (np.float64(0.15221559427752018), 7))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(48), np.float64(0.1)), (np.float64(0.07360013388104585), 8))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(48), np.float64(0.15000000000000002)), (np.float64(0.04259444984456105), 8))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(50), np.float64(0.05)), (np.float64(0.15215983254603388), 7))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(50), np.float64(0.1)), (np.float64(0.06593337756230981), 7))
252s 
252s 2025_03_15-19_39_31: Total Variation: ((np.int64(50), np.float64(0.15000000000000002)), (np.float64(0.064772801292618), 7))
252s 
252s 2025_03_15-19_39_31: Estimated Coverage: 9
252s 
252s 2025_03_15-19_39_31: param: h=44 e=0.15000000000000002 cov=9 max_cov=24 min_cov=0
252s 
252s 2025_03_15-19_39_31: h, e, mu selection complete.
252s 
252s 2025_03_15-19_39_31: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_32: EM Iteration 0: relative error = 0.000235350798576072
252s 
252s 2025_03_15-19_39_32: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_33: EM Iteration 1: relative error = 6.577855579460539e-06
252s 
252s 2025_03_15-19_39_33: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_34: EM Iteration 2: relative error = 2.591177699282294e-07
252s 
252s 2025_03_15-19_39_34: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_35: EM Iteration 3: relative error = 2.5646124798903106e-08
252s 
252s 2025_03_15-19_39_35: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_36: EM Iteration 4: relative error = 1.1565933113109722e-09
252s 
252s 2025_03_15-19_39_36: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_37: EM Iteration 5: relative error = 1.2105262006751484e-10
252s 
252s 2025_03_15-19_39_37: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt -max_cov 24 -min_cov 0 -cov 9 -save_stats 1
252s 
252s b''
252s 2025_03_15-19_39_38: EM Iteration 6: relative error = 1.5789472182111667e-11
252s 
252s 2025_03_15-19_39_38: cp /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confmat_0_44_0.150000.txt /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confMatEst.txt
252s 
252s b''
252s 2025_03_15-19_39_38: EM complete.
252s 
252s 2025_03_15-19_39_38: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_0_0 -ihash_st 0 -ihash_ed 24503 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
252s 
252s b''
252s 2025_03_15-19_39_38: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 1_0_0 -ihash_st 24503 -ihash_ed 49006 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_39: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 2_0_0 -ihash_st 49006 -ihash_ed 73509 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_39: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 3_0_0 -ihash_st 73509 -ihash_ed 98012 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_40: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 4_0_0 -ihash_st 98012 -ihash_ed 122515 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_40: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 5_0_0 -ihash_st 122515 -ihash_ed 147018 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_41: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 6_0_0 -ihash_st 147018 -ihash_ed 171521 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_41: /usr/lib/uc-echo/NeighborJoin -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -st2 0 -ed2 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 7_0_0 -ihash_st 171521 -ihash_ed 196024 -max_cov 24 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.hash -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/all.index
257s 
257s b''
257s 2025_03_15-19_39_41: /usr/lib/uc-echo/NeighborMerge -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 1_0_0_0 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_1_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_2_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_3_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_4_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_5_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_6_0_0.list -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_7_0_0.list
257s 
257s b''
257s 2025_03_15-19_39_42: rm /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_1_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_2_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_3_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_4_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_5_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_6_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_7_0_0.list
257s 
257s b''
257s 2025_03_15-19_39_42: mv /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_1_0_0_0.list /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list
257s 
257s b''
257s 2025_03_15-19_39_42: /usr/lib/uc-echo/Voting -read /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/revdataMMAP.txt -st 0 -ed 20000 -K 15 -h 44 -e 0.150000 -fpre /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -fsuf 0_44_0.150000 -input /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/neighbors_0_0.list -confMat /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/confMatEst.txt -max_cov 24 -min_cov 0 -cov 9
257s 
257s b''
257s 2025_03_15-19_39_43: Deleting Neighbor Files...
257s 
257s 2025_03_15-19_39_43: find /tmp/autopkgtest.lWdJgK/build.WFH/src/tmp/tmpb20g353h/ -name neighbor* -delete
257s 
257s b''
257s 2025_03_15-19_39_43: Error correction complete.
257s 
257s 2025_03_15-19_39_43: Removing Temporary Directory...
257s 
257s 2025_03_15-19_39_43: Output is in file: output/sample_data.fastq
257s 
257s 2025_03_15-19_39_43: Total running time (h:m:s): 0:00:23.191866
257s 
257s 2025_03_15-19_39_43: End...
257s 
257s cleaning up ...
257s autopkgtest [19:39:43]: test runtest: -----------------------]
258s autopkgtest [19:39:44]: test runtest:  - - - - - - - - - - results - - - - - - - - - -
258s runtest              PASS
258s autopkgtest [19:39:44]: @@@@@@@@@@@@@@@@@@@@ summary
258s runtest              PASS
277s nova [W] Using flock in prodstack6-s390x
277s Creating nova instance adt-plucky-s390x-uc-echo-20250315-193526-juju-7f2275-prod-proposed-migration-environment-2-c1dcbdd7-5dcf-4db1-ac49-e2d01eea7593 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
277s nova [W] Timed out waiting for e890fe68-5dd5-4316-9bc7-f31fb433dae8 to get deleted.