0s autopkgtest [19:33:35]: starting date and time: 2025-03-15 19:33:35+0000 0s autopkgtest [19:33:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:33:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._ay3_0d5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade trf --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-10.secgroup --name adt-plucky-s390x-trf-20250315-193335-juju-7f2275-prod-proposed-migration-environment-2-0b3f9f8b-9c2d-4e49-a6e2-0fcba6e9dc66 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [19:35:20]: testbed dpkg architecture: s390x 105s autopkgtest [19:35:20]: testbed apt version: 2.9.33 106s autopkgtest [19:35:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s autopkgtest [19:35:21]: testbed release detected to be: None 107s autopkgtest [19:35:22]: updating testbed package index (apt update) 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 107s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 107s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 108s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 108s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 108s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 108s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 108s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 108s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 108s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 108s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 108s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 108s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 108s Fetched 965 kB in 1s (1097 kB/s) 109s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s Calculating upgrade... 110s Calculating upgrade... 110s The following packages were automatically installed and are no longer required: 110s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 110s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 110s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 110s linux-tools-6.11.0-8-generic 110s Use 'sudo apt autoremove' to remove them. 110s The following packages will be upgraded: 110s pinentry-curses python3-jinja2 strace 110s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Need to get 652 kB of archives. 110s After this operation, 27.6 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 110s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 111s Fetched 652 kB in 1s (1064 kB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 111s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 111s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 111s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 111s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 111s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 111s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 111s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 111s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 111s Setting up strace (6.13+ds-1ubuntu1) ... 111s Processing triggers for man-db (2.13.0-1) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Solving dependencies... 112s The following packages will be REMOVED: 112s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 112s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 112s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 112s linux-tools-6.11.0-8-generic* 112s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 112s After this operation, 167 MB disk space will be freed. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 112s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 112s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 112s Removing libpython3.12t64:s390x (3.12.9-1) ... 112s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 112s Removing libnsl2:s390x (1.3.0-3build3) ... 112s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 112s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 112s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 113s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 113s Processing triggers for libc-bin (2.41-1ubuntu1) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 113s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 113s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 113s autopkgtest [19:35:28]: upgrading testbed (apt dist-upgrade and autopurge) 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 114s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 114s Starting 2 pkgProblemResolver with broken count: 0 114s Done 114s Entering ResolveByKeep 114s 114s Calculating upgrade... 114s The following packages will be upgraded: 114s libc-bin libc-dev-bin libc6 libc6-dev locales 115s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Need to get 9512 kB of archives. 115s After this operation, 8192 B of additional disk space will be used. 115s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 115s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 115s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 116s Preconfiguring packages ... 116s Fetched 9512 kB in 1s (8243 kB/s) 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 116s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 116s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 116s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 116s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Setting up libc6:s390x (2.41-1ubuntu2) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 116s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 116s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Setting up libc-bin (2.41-1ubuntu2) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 116s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 116s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 116s Setting up locales (2.41-1ubuntu2) ... 117s Generating locales (this might take a while)... 118s en_US.UTF-8... done 118s Generation complete. 118s Setting up libc-dev-bin (2.41-1ubuntu2) ... 118s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 118s Processing triggers for man-db (2.13.0-1) ... 118s Processing triggers for systemd (257.3-1ubuntu3) ... 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 120s Solving dependencies... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [19:35:35]: rebooting testbed after setup commands that affected boot 144s autopkgtest [19:35:59]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 147s autopkgtest [19:36:02]: @@@@@@@@@@@@@@@@@@@@ apt-source trf 149s Get:1 http://ftpmaster.internal/ubuntu plucky/universe trf 4.09.1-6 (dsc) [2054 B] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/universe trf 4.09.1-6 (tar) [274 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky/universe trf 4.09.1-6 (diff) [16.1 kB] 149s gpgv: Signature made Sun Oct 2 13:33:54 2022 UTC 149s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 149s gpgv: issuer "emollier@debian.org" 149s gpgv: Can't check signature: No public key 149s dpkg-source: warning: cannot verify inline signature for ./trf_4.09.1-6.dsc: no acceptable signature found 149s autopkgtest [19:36:04]: testing package trf version 4.09.1-6 150s autopkgtest [19:36:05]: build not needed 151s autopkgtest [19:36:06]: test run-unit-test: preparing testbed 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s The following NEW packages will be installed: 152s bc html2text trf trf-examples 152s 0 upgraded, 4 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 246 kB of archives. 152s After this operation, 761 kB of additional disk space will be used. 152s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x bc s390x 1.07.1-4 [90.2 kB] 152s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x html2text s390x 2.2.3-3 [88.8 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/universe s390x trf s390x 4.09.1-6 [52.0 kB] 152s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x trf-examples all 4.09.1-6 [14.6 kB] 152s Fetched 246 kB in 0s (508 kB/s) 152s Selecting previously unselected package bc. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 153s Preparing to unpack .../archives/bc_1.07.1-4_s390x.deb ... 153s Unpacking bc (1.07.1-4) ... 153s Selecting previously unselected package html2text. 153s Preparing to unpack .../html2text_2.2.3-3_s390x.deb ... 153s Unpacking html2text (2.2.3-3) ... 153s Selecting previously unselected package trf. 153s Preparing to unpack .../trf_4.09.1-6_s390x.deb ... 153s Unpacking trf (4.09.1-6) ... 153s Selecting previously unselected package trf-examples. 153s Preparing to unpack .../trf-examples_4.09.1-6_all.deb ... 153s Unpacking trf-examples (4.09.1-6) ... 153s Setting up trf-examples (4.09.1-6) ... 153s Setting up bc (1.07.1-4) ... 153s Setting up trf (4.09.1-6) ... 153s Setting up html2text (2.2.3-3) ... 153s Processing triggers for man-db (2.13.0-1) ... 153s Processing triggers for install-info (7.1.1-1) ... 155s autopkgtest [19:36:10]: test run-unit-test: [----------------------- 155s 155s . 155s 155s . 155s 155s ...................... 155s comparing test results of test_seqs.fasta.s3.2.5.7.80.10.50.2000.1.html ... 155s |       | Size |Number|  Size   |Matches|Indels |     |   |   |   |   | (0-2) | 155s |1--1225|  35  | 35.0 |   35    |  100  |   0   |2450 |28 |22 |20 |28 | 1.98  | 155s Compare consensus size 155s Comparing entropy 155s PASS 155s comparing test results of test_seqs.fasta.s2.2.5.7.80.10.50.2000.1.html ... 155s 155s Tandem Repeats Finder, Version 4.09 155s Copyright (C) Dr. Gary Benson 1999-2012. All rights reserved. 155s 155s Loading sequence... 155s Allocating Memory... 155s Initializing data structures... 155s Computing TR Model Statistics... 155s Scanning Sequence 1... 155s Freeing Memory... 155s Resolving output... 155s Done. 155s Loading sequence file... 155s Allocating Memory... 155s Initializing data structures... 155s Computing TR Model Statistics... 155s Scanning Sequence 2... 155s Freeing Memory... 155s Resolving output... 155s Done. 155s Loading sequence file... 155s Allocating Memory... 155s Initializing data structures... 155s Computing TR Model Statistics... 155s Scanning Sequence 3... 155s Freeing Memory... 155s Resolving output... 155s Done./tmp/autopkgtest.0KYP1a/build.AcE/src/debian/tests/run-unit-test: line 49: [:  Size : integer expression expected 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s |       | Size |Number|  Size   |Matches|Indels |     |   |   |   |   | (0-2) | 155s | 1--84 |  12  | 7.0  |   12    |  100  |   0   | 168 |16 |41 |25 |16 | 1.89  | 155s Compare consensus size 155s Comparing entropy 155s /tmp/autopkgtest.0KYP1a/build.AcE/src/debian/tests/run-unit-test: line 49: [:  Size : integer expression expected 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s /tmp/autopkgtest.0KYP1a/build.AcE/src/debian/tests/run-unit-test: line 49: [:  Size : integer expression expected 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s PASS 155s comparing test results of test_seqs.fasta.s1.2.5.7.80.10.50.2000.1.html ... 155s |       | Size |Number|  Size   |Matches|Indels |     |   |   |   |   | (0-2) | 155s | 1--35 |  7   | 5.0  |    7    |  100  |   0   | 70  |14 |28 |28 |28 | 1.95  | 155s Compare consensus size 155s Comparing entropy 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s (standard_in) 1: illegal character: ^H 155s PASS 155s autopkgtest [19:36:10]: test run-unit-test: -----------------------] 156s run-unit-test PASS 156s autopkgtest [19:36:11]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 156s autopkgtest [19:36:11]: @@@@@@@@@@@@@@@@@@@@ summary 156s run-unit-test PASS 175s nova [W] Using flock in prodstack6-s390x 175s flock: timeout while waiting to get lock 175s Creating nova instance adt-plucky-s390x-trf-20250315-193335-juju-7f2275-prod-proposed-migration-environment-2-0b3f9f8b-9c2d-4e49-a6e2-0fcba6e9dc66 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 175s nova [W] Timed out waiting for c1d57477-79f3-429c-ad09-593178d9ff2f to get deleted.