0s autopkgtest [19:33:16]: starting date and time: 2025-03-15 19:33:16+0000 0s autopkgtest [19:33:16]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:33:16]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.f_102ufp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade transtermhp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-4.secgroup --name adt-plucky-s390x-transtermhp-20250315-193316-juju-7f2275-prod-proposed-migration-environment-2-a7efe4c4-31c4-4e13-ba07-885d7cf43045 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 124s autopkgtest [19:35:20]: testbed dpkg architecture: s390x 124s autopkgtest [19:35:20]: testbed apt version: 2.9.33 125s autopkgtest [19:35:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 125s autopkgtest [19:35:21]: testbed release detected to be: None 126s autopkgtest [19:35:22]: updating testbed package index (apt update) 126s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 126s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 126s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 126s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 127s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 127s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 127s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 127s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 127s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 127s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 127s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 127s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 127s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 127s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 127s Fetched 965 kB in 1s (1116 kB/s) 128s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Calculating upgrade... 129s Calculating upgrade... 129s The following packages were automatically installed and are no longer required: 129s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 129s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 129s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 129s linux-tools-6.11.0-8-generic 129s Use 'sudo apt autoremove' to remove them. 129s The following packages will be upgraded: 129s pinentry-curses python3-jinja2 strace 129s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 652 kB of archives. 129s After this operation, 27.6 kB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 129s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 129s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 130s Fetched 652 kB in 1s (1100 kB/s) 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 130s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 130s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 130s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 130s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 130s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 130s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 130s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 130s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 130s Setting up strace (6.13+ds-1ubuntu1) ... 130s Processing triggers for man-db (2.13.0-1) ... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Solving dependencies... 131s The following packages will be REMOVED: 131s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 131s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 131s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 131s linux-tools-6.11.0-8-generic* 131s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 131s After this operation, 167 MB disk space will be freed. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 131s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 131s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 131s Removing libpython3.12t64:s390x (3.12.9-1) ... 131s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 131s Removing libnsl2:s390x (1.3.0-3build3) ... 131s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 131s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 131s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 132s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 132s Processing triggers for libc-bin (2.41-1ubuntu1) ... 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 132s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 132s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 132s autopkgtest [19:35:28]: upgrading testbed (apt dist-upgrade and autopurge) 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 133s Entering ResolveByKeep 133s 133s Calculating upgrade... 133s The following packages will be upgraded: 133s libc-bin libc-dev-bin libc6 libc6-dev locales 133s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 9512 kB of archives. 133s After this operation, 8192 B of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 134s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 134s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 134s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 135s Preconfiguring packages ... 135s Fetched 9512 kB in 1s (8622 kB/s) 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 135s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 135s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 135s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 135s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up libc6:s390x (2.41-1ubuntu2) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 135s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 135s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up libc-bin (2.41-1ubuntu2) ... 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 135s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 135s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 135s Setting up locales (2.41-1ubuntu2) ... 136s Generating locales (this might take a while)... 136s en_US.UTF-8... done 136s Generation complete. 137s Setting up libc-dev-bin (2.41-1ubuntu2) ... 137s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 137s Processing triggers for man-db (2.13.0-1) ... 137s Processing triggers for systemd (257.3-1ubuntu3) ... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 139s Solving dependencies... 139s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [19:35:35]: rebooting testbed after setup commands that affected boot 159s autopkgtest [19:35:55]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 162s autopkgtest [19:35:58]: @@@@@@@@@@@@@@@@@@@@ apt-source transtermhp 164s Get:1 http://ftpmaster.internal/ubuntu plucky/universe transtermhp 2.09-5 (dsc) [2099 B] 164s Get:2 http://ftpmaster.internal/ubuntu plucky/universe transtermhp 2.09-5 (tar) [71.3 kB] 164s Get:3 http://ftpmaster.internal/ubuntu plucky/universe transtermhp 2.09-5 (diff) [15.9 kB] 164s gpgv: Signature made Thu Aug 20 15:06:33 2020 UTC 164s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 164s gpgv: issuer "npatra974@gmail.com" 164s gpgv: Can't check signature: No public key 164s dpkg-source: warning: cannot verify inline signature for ./transtermhp_2.09-5.dsc: no acceptable signature found 164s autopkgtest [19:36:00]: testing package transtermhp version 2.09-5 164s autopkgtest [19:36:00]: build not needed 165s autopkgtest [19:36:01]: test run-unit-test: preparing testbed 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 166s The following NEW packages will be installed: 166s transtermhp 166s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 166s Need to get 134 kB of archives. 166s After this operation, 554 kB of additional disk space will be used. 166s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x transtermhp s390x 2.09-5 [134 kB] 166s Fetched 134 kB in 0s (360 kB/s) 166s Selecting previously unselected package transtermhp. 166s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 166s Preparing to unpack .../transtermhp_2.09-5_s390x.deb ... 166s Unpacking transtermhp (2.09-5) ... 166s Setting up transtermhp (2.09-5) ... 166s Processing triggers for man-db (2.13.0-1) ... 168s autopkgtest [19:36:04]: test run-unit-test: [----------------------- 168s calibrate.sh 168s expterm.dat 168s infile.fasta 168s make_expterm.py 168s mfold_rna.sh 168s random_fasta.py 168s Test 1 168s TransTerm Options = 168s NOTE: warnings about 'using version 1.0 confidence' are expected and OK. 168s TransTermHP v2.08 (built on Aug 20 2020) 168s WARNING: USING VERSION 1.0 CONFIDENCE. 168s (use -p expterm.dat to use v2.0 confidence) 168s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 168s 168s --gc=-2.3 --au=-0.9 --gu=1.3 --mm=3.5 --gap=6 168s --max-len=59 --min-stem=4 --max-loop=13 --min-loop=3 168s --uwin-length=6 --uwin-require=3 --max-hp-score=-2 --max-tail-score=-2.5 168s --loop-penalty=1,2,3,4,5,6,7,8,9,10,11 168s --start-cut=0 --end-cut=25 168s 168s 168s warning: no examples in genes; can't compute conf. 168s 168s Each terminator entry starts in column 3 and is of the form: 168s term # start - end +/- regionconf hp tail | notes 168s Followed by the sequence of the 5' tail, 5' stem, loop, 3' stem, and 3' tail. 168s Genes are interspersed, and start the first column. 168s 168s 168s Wall clock time = 0 seconds. 168s calibrate.sh: Running TransTerm on random sequence with %AT = 0.26 180s WARNING: USING VERSION 1.0 CONFIDENCE. 180s (use -p expterm.dat to use v2.0 confidence) 180s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 197s Seq: random (length 20000000, 14818 genes) 197s 198s Wall clock time = -68 seconds. 198s calibrate.sh: Running TransTerm on random sequence with %AT = 0.28 210s WARNING: USING VERSION 1.0 CONFIDENCE. 210s (use -p expterm.dat to use v2.0 confidence) 210s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 229s Seq: random (length 20000000, 14735 genes) 229s 230s Wall clock time = 20 seconds. 230s calibrate.sh: Running TransTerm on random sequence with %AT = 0.30 242s WARNING: USING VERSION 1.0 CONFIDENCE. 242s (use -p expterm.dat to use v2.0 confidence) 242s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 264s Seq: random (length 20000000, 14751 genes) 264s 264s Wall clock time = 22 seconds. 264s calibrate.sh: Running TransTerm on random sequence with %AT = 0.32 277s WARNING: USING VERSION 1.0 CONFIDENCE. 277s (use -p expterm.dat to use v2.0 confidence) 277s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 301s Seq: random (length 20000000, 14819 genes) 301s 302s Wall clock time = 25 seconds. 302s calibrate.sh: Running TransTerm on random sequence with %AT = 0.34 314s WARNING: USING VERSION 1.0 CONFIDENCE. 314s (use -p expterm.dat to use v2.0 confidence) 314s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 341s Seq: random (length 20000000, 14869 genes) 341s 341s Wall clock time = 27 seconds. 341s calibrate.sh: Running TransTerm on random sequence with %AT = 0.36 354s WARNING: USING VERSION 1.0 CONFIDENCE. 354s (use -p expterm.dat to use v2.0 confidence) 354s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 383s Seq: random (length 20000000, 14730 genes) 383s 383s Wall clock time = 29 seconds. 383s calibrate.sh: Running TransTerm on random sequence with %AT = 0.38 396s WARNING: USING VERSION 1.0 CONFIDENCE. 396s (use -p expterm.dat to use v2.0 confidence) 396s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 427s Seq: random (length 20000000, 14681 genes) 427s 428s Wall clock time = 32 seconds. 428s calibrate.sh: Running TransTerm on random sequence with %AT = 0.40 440s WARNING: USING VERSION 1.0 CONFIDENCE. 440s (use -p expterm.dat to use v2.0 confidence) 440s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 474s Seq: random (length 20000000, 14890 genes) 474s 474s Wall clock time = 34 seconds. 474s calibrate.sh: Running TransTerm on random sequence with %AT = 0.42 487s WARNING: USING VERSION 1.0 CONFIDENCE. 487s (use -p expterm.dat to use v2.0 confidence) 487s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 522s Seq: random (length 20000000, 14775 genes) 522s 523s Wall clock time = 36 seconds. 523s calibrate.sh: Running TransTerm on random sequence with %AT = 0.44 535s WARNING: USING VERSION 1.0 CONFIDENCE. 535s (use -p expterm.dat to use v2.0 confidence) 535s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 572s Seq: random (length 20000000, 14860 genes) 572s 573s Wall clock time = 38 seconds. 573s calibrate.sh: Running TransTerm on random sequence with %AT = 0.46 586s WARNING: USING VERSION 1.0 CONFIDENCE. 586s (use -p expterm.dat to use v2.0 confidence) 586s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 626s Seq: random (length 20000000, 14797 genes) 626s 627s Wall clock time = 42 seconds. 627s calibrate.sh: Running TransTerm on random sequence with %AT = 0.48 640s WARNING: USING VERSION 1.0 CONFIDENCE. 640s (use -p expterm.dat to use v2.0 confidence) 640s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 681s Seq: random (length 20000000, 14822 genes) 681s 682s Wall clock time = 42 seconds. 682s calibrate.sh: Running TransTerm on random sequence with %AT = 0.50 695s WARNING: USING VERSION 1.0 CONFIDENCE. 695s (use -p expterm.dat to use v2.0 confidence) 695s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 738s Seq: random (length 20000000, 14775 genes) 738s 738s Wall clock time = 43 seconds. 738s calibrate.sh: Running TransTerm on random sequence with %AT = 0.52 751s WARNING: USING VERSION 1.0 CONFIDENCE. 751s (use -p expterm.dat to use v2.0 confidence) 751s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 795s Seq: random (length 20000000, 14792 genes) 795s 796s Wall clock time = 45 seconds. 796s calibrate.sh: Running TransTerm on random sequence with %AT = 0.54 809s WARNING: USING VERSION 1.0 CONFIDENCE. 809s (use -p expterm.dat to use v2.0 confidence) 809s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 855s Seq: random (length 20000000, 14766 genes) 855s 855s Wall clock time = 46 seconds. 855s calibrate.sh: Running TransTerm on random sequence with %AT = 0.56 868s WARNING: USING VERSION 1.0 CONFIDENCE. 868s (use -p expterm.dat to use v2.0 confidence) 868s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 916s Seq: random (length 20000000, 14804 genes) 916s 917s Wall clock time = 49 seconds. 917s calibrate.sh: Running TransTerm on random sequence with %AT = 0.58 930s WARNING: USING VERSION 1.0 CONFIDENCE. 930s (use -p expterm.dat to use v2.0 confidence) 930s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 979s Seq: random (length 20000000, 14863 genes) 979s 979s Wall clock time = 49 seconds. 979s calibrate.sh: Running TransTerm on random sequence with %AT = 0.60 992s WARNING: USING VERSION 1.0 CONFIDENCE. 992s (use -p expterm.dat to use v2.0 confidence) 992s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1045s Seq: random (length 20000000, 14652 genes) 1045s 1045s Wall clock time = 53 seconds. 1045s calibrate.sh: Running TransTerm on random sequence with %AT = 0.62 1059s WARNING: USING VERSION 1.0 CONFIDENCE. 1059s (use -p expterm.dat to use v2.0 confidence) 1059s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1111s Seq: random (length 20000000, 14838 genes) 1111s 1112s Wall clock time = 53 seconds. 1112s calibrate.sh: Running TransTerm on random sequence with %AT = 0.64 1125s WARNING: USING VERSION 1.0 CONFIDENCE. 1125s (use -p expterm.dat to use v2.0 confidence) 1125s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1177s Seq: random (length 20000000, 14858 genes) 1177s 1177s Wall clock time = 52 seconds. 1177s calibrate.sh: Running TransTerm on random sequence with %AT = 0.66 1190s WARNING: USING VERSION 1.0 CONFIDENCE. 1190s (use -p expterm.dat to use v2.0 confidence) 1190s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1246s Seq: random (length 20000000, 14833 genes) 1246s 1246s Wall clock time = 56 seconds. 1246s calibrate.sh: Running TransTerm on random sequence with %AT = 0.68 1259s WARNING: USING VERSION 1.0 CONFIDENCE. 1259s (use -p expterm.dat to use v2.0 confidence) 1259s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1315s Seq: random (length 20000000, 14714 genes) 1315s 1315s Wall clock time = 56 seconds. 1315s calibrate.sh: Running TransTerm on random sequence with %AT = 0.70 1329s WARNING: USING VERSION 1.0 CONFIDENCE. 1329s (use -p expterm.dat to use v2.0 confidence) 1329s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1384s Seq: random (length 20000000, 14752 genes) 1384s 1385s Wall clock time = 56 seconds. 1385s calibrate.sh: Running TransTerm on random sequence with %AT = 0.72 1397s WARNING: USING VERSION 1.0 CONFIDENCE. 1397s (use -p expterm.dat to use v2.0 confidence) 1397s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1450s Seq: random (length 20000000, 14805 genes) 1450s 1450s Wall clock time = 53 seconds. 1450s calibrate.sh: Running TransTerm on random sequence with %AT = 0.74 1463s WARNING: USING VERSION 1.0 CONFIDENCE. 1463s (use -p expterm.dat to use v2.0 confidence) 1463s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1515s Seq: random (length 20000000, 14865 genes) 1515s 1515s Wall clock time = 52 seconds. 1515s calibrate.sh: Running TransTerm on random sequence with %AT = 0.76 1528s WARNING: USING VERSION 1.0 CONFIDENCE. 1528s (use -p expterm.dat to use v2.0 confidence) 1528s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1580s Seq: random (length 20000000, 14808 genes) 1580s 1580s Wall clock time = 53 seconds. 1580s calibrate.sh: Running TransTerm on random sequence with %AT = 0.78 1593s WARNING: USING VERSION 1.0 CONFIDENCE. 1593s (use -p expterm.dat to use v2.0 confidence) 1593s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1645s Seq: random (length 20000000, 14757 genes) 1645s 1646s Wall clock time = 53 seconds. 1646s calibrate.sh: Running TransTerm on random sequence with %AT = 0.80 1658s WARNING: USING VERSION 1.0 CONFIDENCE. 1658s (use -p expterm.dat to use v2.0 confidence) 1658s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1711s Seq: random (length 20000000, 14846 genes) 1711s 1711s Wall clock time = 53 seconds. 1711s calibrate.sh: Running TransTerm on random sequence with %AT = 0.82 1724s WARNING: USING VERSION 1.0 CONFIDENCE. 1724s (use -p expterm.dat to use v2.0 confidence) 1724s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1777s Seq: random (length 20000000, 14642 genes) 1777s 1778s Wall clock time = 54 seconds. 1778s calibrate.sh: Running TransTerm on random sequence with %AT = 0.84 1790s WARNING: USING VERSION 1.0 CONFIDENCE. 1790s (use -p expterm.dat to use v2.0 confidence) 1790s Version 1 confidence scheme exists only for debugging andhistorical reasons. Use the updated scoring system. 1844s Seq: random (length 20000000, 14738 genes) 1844s 1845s Wall clock time = 55 seconds. 1845s Creating distribution file in expterm.dat 1846s You must specify a background distribution file with '-p expterm.dat'. 1846s Done. You can run transterm with this background distribution using '-r expterm.dat' 1846s PASS 1846s Test 2 1846s 2ndscore (Aug 20 2020) 1846s 1846s --gc=-2.1 --au=-1.3 --gu=-0.8 --mm=3.5 --gap=3.9 1846s --max-len=59 --max-loop=13 --min-loop=3 1846s --loop-penalty=4.1,4.9,4.4,4.7,5,5.1,5.2,5.3,5.4,5.5,5.6 1846s 1846s 1. Seq: 9258 (length 34) 1846s 2. Seq: 9361 (length 611) 1846s 3. Seq: 9365 (length 796) 1846s 4. Seq: 9371 (length 762) 1846s 5. Seq: 9544 (length PASS 1846s 810) 1846s 6. Seq: 9598 (length 797) 1846s 7. Seq: 9606 (length 797) 1846s 8. Seq: 9615 (length 802) 1846s 9. Seq: 9685 (length 687) 1846s 10. Seq: 9785 (length 793) 1846s 11. Seq: 9796 (length 806) 1846s 12. Seq: 9913 (length 798) 1846s 13. Seq: 9986 (length 789) 1846s 14. Seq: 10090 (length 770) 1846s 15. Seq: 10116 (length 832) 1846s 16. Seq: 10141 (length 327) 1846s 17. Seq: 13616 (length 884) 1846s 18. Seq: 28377 (length 87) 1846s 19. Seq: 42254 (length 372) 1847s autopkgtest [20:04:03]: test run-unit-test: -----------------------] 1847s autopkgtest [20:04:03]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 1847s run-unit-test PASS 1848s autopkgtest [20:04:04]: @@@@@@@@@@@@@@@@@@@@ summary 1848s run-unit-test PASS 1866s nova [W] Using flock in prodstack6-s390x 1866s Creating nova instance adt-plucky-s390x-transtermhp-20250315-193316-juju-7f2275-prod-proposed-migration-environment-2-a7efe4c4-31c4-4e13-ba07-885d7cf43045 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 1866s nova [W] Timed out waiting for 3f030738-2b05-44b3-bf78-a790f0f5e997 to get deleted.