0s autopkgtest [19:33:03]: starting date and time: 2025-03-15 19:33:03+0000 0s autopkgtest [19:33:03]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:33:03]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.d08ugrgc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade transrate-tools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-9.secgroup --name adt-plucky-s390x-transrate-tools-20250315-193303-juju-7f2275-prod-proposed-migration-environment-15-c8619fb2-a2ae-40b2-bb57-b25107ffe783 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 108s autopkgtest [19:34:51]: testbed dpkg architecture: s390x 108s autopkgtest [19:34:51]: testbed apt version: 2.9.33 109s autopkgtest [19:34:52]: @@@@@@@@@@@@@@@@@@@@ test bed setup 109s autopkgtest [19:34:52]: testbed release detected to be: None 110s autopkgtest [19:34:53]: updating testbed package index (apt update) 110s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 110s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 110s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 111s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 111s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 111s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 111s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 111s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 111s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 111s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 111s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 111s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 111s Fetched 965 kB in 1s (1075 kB/s) 112s Reading package lists... 112s + lsb_release --codename --short 112s + RELEASE=plucky 112s + cat 112s + [ plucky != trusty ] 112s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 112s Calculating upgrade... 113s The following packages were automatically installed and are no longer required: 113s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 113s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 113s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 113s linux-tools-6.11.0-8-generic 113s Use 'sudo apt autoremove' to remove them. 113s The following packages will be upgraded: 113s pinentry-curses python3-jinja2 strace 113s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 652 kB of archives. 113s After this operation, 27.6 kB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 113s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 113s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 113s Fetched 652 kB in 1s (1133 kB/s) 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 114s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 114s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 114s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 114s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 114s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 114s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 114s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 114s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 114s Setting up strace (6.13+ds-1ubuntu1) ... 114s Processing triggers for man-db (2.13.0-1) ... 114s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 114s + /usr/lib/apt/apt-helper analyze-pattern ?true 114s + uname -r 114s + sed s/\./\\./g 114s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 114s + apt list ?obsolete 114s + tail -n+2 114s + cut -d/ -f1 114s + grep -v ^linux-.*6\.14\.0-10-generic.* 114s + obsolete_pkgs=linux-headers-6.11.0-8-generic 114s linux-headers-6.11.0-8 114s linux-modules-6.11.0-8-generic 114s linux-tools-6.11.0-8-generic 114s linux-tools-6.11.0-8 114s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 114s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Solving dependencies... 115s The following packages will be REMOVED: 115s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 115s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 115s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 115s linux-tools-6.11.0-8-generic* 115s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 115s After this operation, 167 MB disk space will be freed. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 115s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 115s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 115s Removing libpython3.12t64:s390x (3.12.9-1) ... 115s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 115s Removing libnsl2:s390x (1.3.0-3build3) ... 115s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 115s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 115s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 116s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 116s Processing triggers for libc-bin (2.41-1ubuntu1) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 116s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 116s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 116s + grep -q trusty /etc/lsb-release 116s + [ ! -d /usr/share/doc/unattended-upgrades ] 116s + [ ! -d /usr/share/doc/lxd ] 116s + [ ! -d /usr/share/doc/lxd-client ] 116s + [ ! -d /usr/share/doc/snapd ] 116s + type iptables 116s + cat 116s + chmod 755 /etc/rc.local 116s + . /etc/rc.local 116s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 116s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 116s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 116s + uname -m 116s + [ s390x = ppc64le ] 116s + [ -d /run/systemd/system ] 116s + systemd-detect-virt --quiet --vm 116s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 116s + cat 116s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 116s + echo COMPRESS=lz4 116s autopkgtest [19:34:59]: upgrading testbed (apt dist-upgrade and autopurge) 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 117s Entering ResolveByKeep 117s 117s Calculating upgrade... 117s The following packages will be upgraded: 117s libc-bin libc-dev-bin libc6 libc6-dev locales 117s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Need to get 9512 kB of archives. 117s After this operation, 8192 B of additional disk space will be used. 117s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 118s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 119s Preconfiguring packages ... 119s Fetched 9512 kB in 2s (5835 kB/s) 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 119s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Setting up libc6:s390x (2.41-1ubuntu2) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 120s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 120s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 120s Setting up libc-bin (2.41-1ubuntu2) ... 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 120s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 120s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 120s Setting up locales (2.41-1ubuntu2) ... 120s Generating locales (this might take a while)... 121s en_US.UTF-8... done 121s Generation complete. 121s Setting up libc-dev-bin (2.41-1ubuntu2) ... 121s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 121s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for systemd (257.3-1ubuntu3) ... 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Starting pkgProblemResolver with broken count: 0 123s Starting 2 pkgProblemResolver with broken count: 0 123s Done 123s Solving dependencies... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [19:35:06]: rebooting testbed after setup commands that affected boot 143s autopkgtest [19:35:26]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 145s autopkgtest [19:35:28]: @@@@@@@@@@@@@@@@@@@@ apt-source transrate-tools 147s Get:1 http://ftpmaster.internal/ubuntu plucky/universe transrate-tools 1.0.0-5 (dsc) [2093 B] 147s Get:2 http://ftpmaster.internal/ubuntu plucky/universe transrate-tools 1.0.0-5 (tar) [6167 B] 147s Get:3 http://ftpmaster.internal/ubuntu plucky/universe transrate-tools 1.0.0-5 (diff) [265 kB] 147s gpgv: Signature made Fri Nov 25 21:08:23 2022 UTC 147s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 147s gpgv: issuer "tille@debian.org" 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./transrate-tools_1.0.0-5.dsc: no acceptable signature found 147s autopkgtest [19:35:30]: testing package transrate-tools version 1.0.0-5 148s autopkgtest [19:35:31]: build not needed 148s autopkgtest [19:35:31]: test run-unit-test: preparing testbed 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Starting pkgProblemResolver with broken count: 0 148s Starting 2 pkgProblemResolver with broken count: 0 148s Done 149s The following NEW packages will be installed: 149s libbamtools2.5.2 transrate-tools 149s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 149s Need to get 420 kB of archives. 149s After this operation, 701 kB of additional disk space will be used. 149s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x libbamtools2.5.2 s390x 2.5.2+dfsg-6build1 [142 kB] 149s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x transrate-tools s390x 1.0.0-5 [278 kB] 149s Fetched 420 kB in 1s (741 kB/s) 149s Selecting previously unselected package libbamtools2.5.2:s390x. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 150s Preparing to unpack .../libbamtools2.5.2_2.5.2+dfsg-6build1_s390x.deb ... 150s Unpacking libbamtools2.5.2:s390x (2.5.2+dfsg-6build1) ... 150s Selecting previously unselected package transrate-tools. 150s Preparing to unpack .../transrate-tools_1.0.0-5_s390x.deb ... 150s Unpacking transrate-tools (1.0.0-5) ... 150s Setting up libbamtools2.5.2:s390x (2.5.2+dfsg-6build1) ... 150s Setting up transrate-tools (1.0.0-5) ... 150s Processing triggers for man-db (2.13.0-1) ... 150s Processing triggers for libc-bin (2.41-1ubuntu2) ... 151s autopkgtest [19:35:34]: test run-unit-test: [----------------------- 151s Test 1 151s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 151s NC_045512.2,4.23343e+07,0,29903,0,0,0,0,20434,0.983136 151s Passed 151s 151s Test 2 151s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 151s NC_045512.2,4.80395e+07,0,29903,0,0,0,0,26785,0.997311 151s Passed 151s 151s Test 3 151s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 151s NC_045512.2,8.39219e+06,0,29903,0,0,0,0,27314,0.997307 151s Passed 151s 151s Test 4 151s name,p_seq_true,bridges,length,fragments_mapped,both_mapped,properpair,good,bases_uncovered,p_not_segmented 151s NC_045512.2,1.67646e+07,0,29903,0,0,0,0,22889,0.994879 151s Passed 151s 151s autopkgtest [19:35:34]: test run-unit-test: -----------------------] 152s autopkgtest [19:35:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 152s run-unit-test PASS 152s autopkgtest [19:35:35]: @@@@@@@@@@@@@@@@@@@@ summary 152s run-unit-test PASS 170s nova [W] Using flock in prodstack6-s390x 170s Creating nova instance adt-plucky-s390x-transrate-tools-20250315-193303-juju-7f2275-prod-proposed-migration-environment-15-c8619fb2-a2ae-40b2-bb57-b25107ffe783 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 170s nova [W] Timed out waiting for abb3b8f4-b33f-427a-a277-d6fc9e2e8ff2 to get deleted.