0s autopkgtest [19:29:16]: starting date and time: 2025-03-15 19:29:16+0000 0s autopkgtest [19:29:16]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:29:16]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8s0qojl4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade tigr-glimmer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-7.secgroup --name adt-plucky-s390x-tigr-glimmer-20250315-192915-juju-7f2275-prod-proposed-migration-environment-15-8a32a036-74e8-4def-930d-83d5227df025 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [19:30:54]: testbed dpkg architecture: s390x 98s autopkgtest [19:30:54]: testbed apt version: 2.9.33 99s autopkgtest [19:30:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s autopkgtest [19:30:55]: testbed release detected to be: None 100s autopkgtest [19:30:56]: updating testbed package index (apt update) 100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 100s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 100s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 100s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 100s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 101s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 101s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 101s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 101s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 101s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 101s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 101s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 101s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 101s Fetched 965 kB in 1s (903 kB/s) 101s Reading package lists... 102s + lsb_release --codename --short 102s + RELEASE=plucky 102s + cat 102s + [ plucky != trusty ] 102s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Calculating upgrade... 102s Calculating upgrade... 102s The following packages were automatically installed and are no longer required: 102s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 102s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 102s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 102s linux-tools-6.11.0-8-generic 102s Use 'sudo apt autoremove' to remove them. 102s The following packages will be upgraded: 102s pinentry-curses python3-jinja2 strace 103s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Need to get 652 kB of archives. 103s After this operation, 27.6 kB of additional disk space will be used. 103s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 103s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 103s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 103s Fetched 652 kB in 1s (1017 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 103s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 103s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 103s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 103s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 103s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 104s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 104s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 104s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 104s Setting up strace (6.13+ds-1ubuntu1) ... 104s Processing triggers for man-db (2.13.0-1) ... 104s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 104s + /usr/lib/apt/apt-helper analyze-pattern ?true 104s + uname -r 104s + sed s/\./\\./g 104s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 104s + apt list ?obsolete 104s + tail -n+2 104s + + grep -v ^linux-.*6\.14\.0-10-generic.* 104s cut -d/ -f1 104s + obsolete_pkgs=linux-headers-6.11.0-8-generic 104s linux-headers-6.11.0-8 104s linux-modules-6.11.0-8-generic 104s linux-tools-6.11.0-8-generic 104s linux-tools-6.11.0-8 104s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Solving dependencies... 105s The following packages will be REMOVED: 105s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 105s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 105s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 105s linux-tools-6.11.0-8-generic* 105s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 105s After this operation, 167 MB disk space will be freed. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 105s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 105s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 105s Removing libpython3.12t64:s390x (3.12.9-1) ... 105s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 105s Removing libnsl2:s390x (1.3.0-3build3) ... 105s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 105s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 105s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 106s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 106s Processing triggers for libc-bin (2.41-1ubuntu1) ... 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 106s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 106s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 106s + grep -q trusty /etc/lsb-release 106s + [ ! -d /usr/share/doc/unattended-upgrades ] 106s + [ ! -d /usr/share/doc/lxd ] 106s + [ ! -d /usr/share/doc/lxd-client ] 106s + [ ! -d /usr/share/doc/snapd ] 106s + type iptables 106s + cat 106s + chmod 755 /etc/rc.local 106s + . /etc/rc.local 106s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 106s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 106s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 106s + uname -m 106s + [ s390x = ppc64le ] 106s + [ -d /run/systemd/system ] 106s + systemd-detect-virt --quiet --vm 106s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 106s + cat 106s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 106s + echo COMPRESS=lz4 106s autopkgtest [19:31:02]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 106s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s Entering ResolveByKeep 107s 107s Calculating upgrade... 107s The following packages will be upgraded: 107s libc-bin libc-dev-bin libc6 libc6-dev locales 107s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 9512 kB of archives. 107s After this operation, 8192 B of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 108s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 108s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 108s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 108s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 108s Preconfiguring packages ... 108s Fetched 9512 kB in 1s (7882 kB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 108s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 108s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 109s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 109s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up libc6:s390x (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 109s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 109s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up libc-bin (2.41-1ubuntu2) ... 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 109s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 109s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 109s Setting up locales (2.41-1ubuntu2) ... 109s Generating locales (this might take a while)... 110s en_US.UTF-8... done 110s Generation complete. 110s Setting up libc-dev-bin (2.41-1ubuntu2) ... 110s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 110s Processing triggers for man-db (2.13.0-1) ... 111s Processing triggers for systemd (257.3-1ubuntu3) ... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Starting pkgProblemResolver with broken count: 0 112s Starting 2 pkgProblemResolver with broken count: 0 112s Done 112s Solving dependencies... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [19:31:08]: rebooting testbed after setup commands that affected boot 133s autopkgtest [19:31:29]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 136s autopkgtest [19:31:32]: @@@@@@@@@@@@@@@@@@@@ apt-source tigr-glimmer 138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (dsc) [2104 B] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (tar) [5638 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/universe tigr-glimmer 3.02b-6 (diff) [20.5 kB] 138s gpgv: Signature made Sat Oct 16 18:40:48 2021 UTC 138s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 138s gpgv: issuer "emollier@debian.org" 138s gpgv: Can't check signature: No public key 138s dpkg-source: warning: cannot verify inline signature for ./tigr-glimmer_3.02b-6.dsc: no acceptable signature found 138s autopkgtest [19:31:34]: testing package tigr-glimmer version 3.02b-6 138s autopkgtest [19:31:34]: build not needed 139s autopkgtest [19:31:35]: test run-unit-test: preparing testbed 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Starting pkgProblemResolver with broken count: 0 140s Starting 2 pkgProblemResolver with broken count: 0 140s Done 140s The following NEW packages will be installed: 140s tigr-glimmer 140s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 140s Need to get 272 kB of archives. 140s After this operation, 593 kB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x tigr-glimmer s390x 3.02b-6 [272 kB] 141s Fetched 272 kB in 0s (623 kB/s) 141s Selecting previously unselected package tigr-glimmer. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 141s Preparing to unpack .../tigr-glimmer_3.02b-6_s390x.deb ... 141s Unpacking tigr-glimmer (3.02b-6) ... 141s Setting up tigr-glimmer (3.02b-6) ... 141s Processing triggers for man-db (2.13.0-1) ... 142s autopkgtest [19:31:38]: test run-unit-test: [----------------------- 142s Begin Test 142s Starting at Sat Mar 15 19:31:38 2025 142s 142s Sequence file = example.fa 142s Excluded regions file = none 142s Circular genome = true 142s Initial minimum gene length = 90 bp 142s Determine optimal min gene length to maximize number of genes 142s Maximum overlap bases = 30 142s Start codons = atg,gtg,ttg 142s Stop codons = taa,tag,tga 142s Sequence length = 149 142s Final minimum gene length = 90 142s Number of genes = 1 142s Total bases = 114 142s ---------------Passed!---------------------------- 142s Starting at Sat Mar 15 19:31:38 2025 142s 142s Sequence file = example.fa 142s Number of sequences = 4 142s ICM model file = test1.icm 142s Excluded regions file = none 142s List of orfs file = none 142s Input is NOT separate orfs 142s Independent (non-coding) scores are used 142s Circular genome = true 142s Truncated orfs = false 142s Minimum gene length = 100 bp 142s Maximum overlap bases = 30 142s Threshold score = 30 142s Use first start codon = false 142s Start codons = atg,gtg,ttg 142s Start probs = 0.600,0.300,0.100 142s Stop codons = taa,tag,tga 142s GC percentage = 81.4% 142s Ignore score on orfs longer than 3683 142s Analyzing Sequence #1 142s Start Find_Orfs 142s Start Score_Orfs 142s Start Process_Events 142s Start Trace_Back 142s Analyzing Sequence #2 142s Start Find_Orfs 142s Start Score_Orfs 142s Start Process_Events 142s Start Trace_Back 142s Analyzing Sequence #3 142s Start Find_Orfs 142s Start Score_Orfs 142s Start Process_Events 142s Start Trace_Back 142s Analyzing Sequence #4 142s Start Find_Orfs 142s Start Score_Orfs 142s Start Process_Events 142s Start Trace_Back 142s autopkgtest [19:31:38]: test run-unit-test: -----------------------] 143s autopkgtest [19:31:39]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 143s run-unit-test PASS 143s autopkgtest [19:31:39]: @@@@@@@@@@@@@@@@@@@@ summary 143s run-unit-test PASS 148s nova [W] Using flock in prodstack6-s390x 148s flock: timeout while waiting to get lock 148s Creating nova instance adt-plucky-s390x-tigr-glimmer-20250315-192915-juju-7f2275-prod-proposed-migration-environment-15-8a32a036-74e8-4def-930d-83d5227df025 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 148s nova [W] Timed out waiting for 70ed26d9-91d1-4236-8bf5-8723e6e879ac to get deleted.