0s autopkgtest [19:24:37]: starting date and time: 2025-03-15 19:24:37+0000 0s autopkgtest [19:24:37]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:24:37]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.z5hk2bxz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade t-coffee --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-5.secgroup --name adt-plucky-s390x-t-coffee-20250315-192437-juju-7f2275-prod-proposed-migration-environment-2-474dd3bf-66e8-4bcc-9f08-e2791115f0a7 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 109s autopkgtest [19:26:26]: testbed dpkg architecture: s390x 109s autopkgtest [19:26:26]: testbed apt version: 2.9.33 109s autopkgtest [19:26:26]: @@@@@@@@@@@@@@@@@@@@ test bed setup 110s autopkgtest [19:26:27]: testbed release detected to be: None 110s autopkgtest [19:26:27]: updating testbed package index (apt update) 111s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 111s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 111s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 111s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 111s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 111s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 111s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 111s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 111s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 111s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 111s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 111s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 111s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 111s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 111s Fetched 965 kB in 1s (1119 kB/s) 112s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 113s Calculating upgrade... 113s The following packages were automatically installed and are no longer required: 113s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 113s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 113s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 113s linux-tools-6.11.0-8-generic 113s Use 'sudo apt autoremove' to remove them. 113s The following packages will be upgraded: 113s pinentry-curses python3-jinja2 strace 113s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Need to get 652 kB of archives. 113s After this operation, 27.6 kB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 114s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 114s Fetched 652 kB in 1s (1096 kB/s) 114s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 114s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 114s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 114s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 114s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 114s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 114s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 114s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 114s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 114s Setting up strace (6.13+ds-1ubuntu1) ... 114s Processing triggers for man-db (2.13.0-1) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Solving dependencies... 115s The following packages will be REMOVED: 115s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 115s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 115s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 115s linux-tools-6.11.0-8-generic* 115s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 115s After this operation, 167 MB disk space will be freed. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 115s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 115s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 115s Removing libpython3.12t64:s390x (3.12.9-1) ... 115s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 115s Removing libnsl2:s390x (1.3.0-3build3) ... 115s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 115s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 115s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 116s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 116s Processing triggers for libc-bin (2.41-1ubuntu1) ... 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 116s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 116s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 117s autopkgtest [19:26:34]: upgrading testbed (apt dist-upgrade and autopurge) 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 117s Starting 2 pkgProblemResolver with broken count: 0 117s Done 117s Entering ResolveByKeep 117s 117s Calculating upgrade... 118s The following packages will be upgraded: 118s libc-bin libc-dev-bin libc6 libc6-dev locales 118s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Need to get 9512 kB of archives. 118s After this operation, 8192 B of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 118s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 119s Preconfiguring packages ... 119s Fetched 9512 kB in 1s (8485 kB/s) 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 119s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Setting up libc6:s390x (2.41-1ubuntu2) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 119s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 119s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Setting up libc-bin (2.41-1ubuntu2) ... 119s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 119s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 119s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 119s Setting up locales (2.41-1ubuntu2) ... 120s Generating locales (this might take a while)... 121s en_US.UTF-8... done 121s Generation complete. 121s Setting up libc-dev-bin (2.41-1ubuntu2) ... 121s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 121s Processing triggers for man-db (2.13.0-1) ... 122s Processing triggers for systemd (257.3-1ubuntu3) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Starting pkgProblemResolver with broken count: 0 123s Starting 2 pkgProblemResolver with broken count: 0 123s Done 123s Solving dependencies... 123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 123s autopkgtest [19:26:40]: rebooting testbed after setup commands that affected boot 142s autopkgtest [19:26:59]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 145s autopkgtest [19:27:02]: @@@@@@@@@@@@@@@@@@@@ apt-source t-coffee 147s Get:1 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (dsc) [2391 B] 147s Get:2 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (tar) [3230 kB] 147s Get:3 http://ftpmaster.internal/ubuntu plucky/universe t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 (diff) [18.3 kB] 147s gpgv: Signature made Fri Nov 25 10:17:33 2022 UTC 147s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 147s gpgv: issuer "tille@debian.org" 147s gpgv: Can't check signature: No public key 147s dpkg-source: warning: cannot verify inline signature for ./t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1.dsc: no acceptable signature found 148s autopkgtest [19:27:05]: testing package t-coffee version 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 148s autopkgtest [19:27:05]: build not needed 149s autopkgtest [19:27:06]: test run-unit-test: preparing testbed 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Starting pkgProblemResolver with broken count: 0 150s Starting 2 pkgProblemResolver with broken count: 0 150s Done 150s The following NEW packages will be installed: 150s t-coffee t-coffee-examples 150s 0 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. 150s Need to get 3597 kB of archives. 150s After this operation, 8586 kB of additional disk space will be used. 150s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x t-coffee s390x 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [945 kB] 151s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x t-coffee-examples all 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 [2653 kB] 151s Fetched 3597 kB in 1s (4719 kB/s) 151s Selecting previously unselected package t-coffee. 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 151s Preparing to unpack .../t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_s390x.deb ... 151s Unpacking t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 151s Selecting previously unselected package t-coffee-examples. 151s Preparing to unpack .../t-coffee-examples_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1_all.deb ... 151s Unpacking t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 151s Setting up t-coffee (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 151s Setting up t-coffee-examples (13.45.0.4846264+really13.41.0.28bdc39+dfsg-1) ... 151s Processing triggers for man-db (2.13.0-1) ... 153s autopkgtest [19:27:10]: test run-unit-test: [----------------------- 153s 153s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 153s -full_log S [0] 153s -genepred_score S [0] nsd 153s -run_name S [0] 153s -mem_mode S [0] mem 153s -extend D [1] 1 153s -extend_mode S [0] very_fast_triplet 153s -max_n_pair D [0] 10 153s -seq_name_for_quadruplet S [0] all 153s -compact S [0] default 153s -clean S [0] no 153s -do_self FL [0] 0 153s -do_normalise D [0] 1000 153s -template_file S [0] 153s -setenv S [0] 0 153s -export S [0] 0 153s -template_mode S [0] 153s -flip D [0] 0 153s -remove_template_file D [0] 0 153s -profile_template_file S [0] 153s -in S [0] 153s -seq S [1] sample_rnaseq1.fasta 153s -aln S [0] 153s -method_limits S [0] 153s -method S [0] 153s -lib S [0] 153s -profile S [0] 153s -profile1 S [0] 153s -profile2 S [0] 153s -pdb S [0] 153s -relax_lib D [0] 1 153s -filter_lib D [0] 0 153s -shrink_lib D [0] 0 153s -out_lib W_F [0] no 153s -out_lib_mode S [0] primary 153s -lib_only D [0] 0 153s -outseqweight W_F [0] no 153s -seq_source S [0] ANY 153s -cosmetic_penalty D [0] 0 153s -gapopen D [0] 0 153s -gapext D [0] 0 153s -fgapopen D [0] 0 153s -fgapext D [0] 0 153s -nomatch D [0] 0 153s -newtree W_F [0] default 153s -tree W_F [0] NO 153s -usetree R_F [0] 153s -tree_mode S [0] nj 153s -distance_matrix_mode S [0] ktup 153s -distance_matrix_sim_mode S [0] idmat_sim1 153s -quicktree FL [0] 0 153s -outfile W_F [0] default 153s -maximise FL [1] 1 153s -output S [0] aln html 153s -len D [0] 0 153s -infile R_F [0] 153s -matrix S [0] default 153s -tg_mode D [0] 1 153s -profile_mode S [0] cw_profile_profile 153s -profile_comparison S [0] profile 153s -dp_mode S [0] linked_pair_wise 153s -ktuple D [0] 1 153s -ndiag D [0] 0 153s -diag_threshold D [0] 0 153s -diag_mode D [0] 0 153s -sim_matrix S [0] vasiliky 153s -transform S [0] 153s -extend_seq FL [0] 0 153s -outorder S [0] input 153s -inorder S [0] aligned 153s -seqnos S [0] off 153s -case S [0] keep 153s -cpu D [0] 0 153s -ulimit D [0] -1 153s -maxnseq D [0] -1 153s -maxlen D [0] -1 153s -sample_dp D [0] 0 153s -weight S [0] default 153s -seq_weight S [0] no 153s -align FL [1] 1 153s -mocca FL [0] 0 153s -domain FL [0] 0 153s -start D [0] 0 153s -len D [0] 0 153s -scale D [0] 0 153s -mocca_interactive FL [0] 0 153s -method_evaluate_mode S [0] default 153s -color_mode S [0] new 153s -aln_line_length D [0] 0 153s -evaluate_mode S [0] triplet 153s -get_type FL [0] 0 153s -clean_aln D [0] 0 153s -clean_threshold D [1] 1 153s -clean_iteration D [1] 1 153s -clean_evaluate_mode S [0] t_coffee_fast 153s -extend_matrix FL [0] 0 153s -prot_min_sim D [40] 40 153s -prot_max_sim D [90] 90 153s -prot_trim D [20] 20 153s -prot_min_cov D [40] 40 153s -pdb_type S [0] d 153s -pdb_min_sim D [35] 35 153s -pdb_max_sim D [100] 100 153s -pdb_min_cov D [50] 50 153s -pdb_blast_server W_F [0] EBI 153s -blast W_F [0] 153s -blast_server W_F [0] EBI 153s -pdb_db W_F [0] pdb 153s -protein_db W_F [0] uniref50 153s -method_log W_F [0] no 153s -struc_to_use S [0] 153s -cache W_F [0] use 153s -print_cache FL [0] 0 153s -align_pdb_param_file W_F [0] no 153s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 153s -external_aligner S [0] NO 153s -msa_mode S [0] tree 153s -et_mode S [0] et 153s -master S [0] no 153s -blast_nseq D [0] 0 153s -lalign_n_top D [0] 10 153s -iterate D [0] 0 153s -trim D [0] 0 153s -split D [0] 0 153s -trimfile S [0] default 153s -split D [0] 0 153s -split_nseq_thres D [0] 0 153s -split_score_thres D [0] 0 153s -check_pdb_status D [0] 0 153s -clean_seq_name D [0] 0 153s -seq_to_keep S [0] 153s -dpa_master_aln S [0] 153s -dpa_maxnseq D [0] 0 153s -dpa_min_score1 D [0] 153s -dpa_min_score2 D [0] 153s -dpa_keep_tmpfile FL [0] 0 153s -dpa_debug D [0] 0 153s -multi_core S [0] templates_jobs_relax_msa_evaluate 153s -n_core D [0] 1 153s -thread D [0] 1 153s -max_n_proc D [0] 0 153s -lib_list S [0] 153s -prune_lib_mode S [0] 5 153s -tip S [0] none 153s -rna_lib S [0] 153s -no_warning D [0] 0 153s -run_local_script D [0] 0 153s -proxy S [0] unset 153s -email S [0] 153s -clean_overaln D [0] 0 153s -overaln_param S [0] 153s -overaln_mode S [0] 153s -overaln_model S [0] 153s -overaln_threshold D [0] 0 153s -overaln_target D [0] 0 153s -overaln_P1 D [0] 0 153s -overaln_P2 D [0] 0 153s -overaln_P3 D [0] 0 153s -overaln_P4 D [0] 0 153s -exon_boundaries S [0] 153s -display D [0] 100 153s 153s INPUT FILES 153s Input File (S) sample_rnaseq1.fasta Format fasta_seq 153s Input File (M) proba_pair 153s 153s Identify Master Sequences [no]: 153s 153s Master Sequences Identified 153s INPUT SEQUENCES: 5 SEQUENCES [RNA] 153s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 153s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 153s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 153s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 153s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 153s 153s Multi Core Mode: 1 processors: 153s 153s --- Process Method/Library/Aln Ssample_rnaseq1.fasta 153s xxx Retrieved Ssample_rnaseq1.fasta 153s --- Process Method/Library/Aln Mproba_pair 153s xxx Retrieved Mproba_pair 153s 153s All Methods Retrieved 153s 153s MANUAL PENALTIES: gapopen=0 gapext=0 153s 153s Library Total Size: [7026] 153s 153s Library Relaxation: Multi_proc [1] 153s 153s ! [Relax Library][TOT= 5][ 0 %] ! [Relax Library][TOT= 5][ 40 %] ! [Relax Library][TOT= 5][ 60 %] ! [Relax Library][TOT= 5][ 80 %] ! [Relax Library][TOT= 5][100 %] 153s #Single Thread 153s 153s Relaxation Summary: [7026]--->[6316] 153s 153s 153s 153s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 153s 153s MAKE GUIDE TREE 153s [MODE=nj][DONE] 153s 153s PROGRESSIVE_ALIGNMENT [Tree Based] 153s Group 1: AC000104.1-17376_17496 153s Group 2: AC068303.10-12902_12788 153s Group 3: AC097725.2-33800_33915 153s Group 4: AL023594.2-7651_7766 153s Group 5: X15934.1-3_121 153s 153s 153s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 122][PID:1561]#Single Thread 153s 153s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 120][PID:1561]#Single Thread 153s 153s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1561]#Single Thread 153s 153s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 129][PID:1561] 153s 153s 153s ! [Final Evaluation][TOT= 129][ 0 %] ! [Final Evaluation][TOT= 129][ 1 %] ! [Final Evaluation][TOT= 129][ 2 %] ! [Final Evaluation][TOT= 129][ 3 %] ! [Final Evaluation][TOT= 129][ 4 %] ! [Final Evaluation][TOT= 129][ 5 %] ! [Final Evaluation][TOT= 129][ 6 %] ! [Final Evaluation][TOT= 129][ 7 %] ! [Final Evaluation][TOT= 129][ 8 %] ! [Final Evaluation][TOT= 129][ 9 %] ! [Final Evaluation][TOT= 129][ 10 %] ! [Final Evaluation][TOT= 129][ 11 %] ! [Final Evaluation][TOT= 129][ 12 %] ! [Final Evaluation][TOT= 129][ 13 %] ! [Final Evaluation][TOT= 129][ 14 %] ! [Final Evaluation][TOT= 129][ 15 %] ! [Final Evaluation][TOT= 129][ 16 %] ! [Final Evaluation][TOT= 129][ 17 %] ! [Final Evaluation][TOT= 129][ 18 %] ! [Final Evaluation][TOT= 129][ 19 %] ! [Final Evaluation][TOT= 129][ 20 %] ! [Final Evaluation][TOT= 129][ 21 %] ! [Final Evaluation][TOT= 129][ 22 %] ! [Final Evaluation][TOT= 129][ 23 %] ! [Final Evaluation][TOT= 129][ 24 %] ! [Final Evaluation][TOT= 129][ 25 %] ! [Final Evaluation][TOT= 129][ 26 %] ! [Final Evaluation][TOT= 129][ 27 %] ! [Final Evaluation][TOT= 129][ 28 %] ! [Final Evaluation][TOT= 129][ 29 %] ! [Final Evaluation][TOT= 129][ 30 %] ! [Final Evaluation][TOT= 129][ 31 %] ! [Final Evaluation][TOT= 129][ 32 %] ! [Final Evaluation][TOT= 129][ 33 %] ! [Final Evaluation][TOT= 129][ 34 %] ! [Final Evaluation][TOT= 129][ 35 %] ! [Final Evaluation][TOT= 129][ 36 %] ! [Final Evaluation][TOT= 129][ 37 %] ! [Final Evaluation][TOT= 129][ 38 %] ! [Final Evaluation][TOT= 129][ 39 %] ! [Final Evaluation][TOT= 129][ 40 %] ! [Final Evaluation][TOT= 129][ 41 %] ! [Final Evaluation][TOT= 129][ 42 %] ! [Final Evaluation][TOT= 129][ 43 %] ! [Final Evaluation][TOT= 129][ 44 %] ! [Final Evaluation][TOT= 129][ 45 %] ! [Final Evaluation][TOT= 129][ 46 %] ! [Final Evaluation][TOT= 129][ 47 %] ! [Final Evaluation][TOT= 129][ 48 %] ! [Final Evaluation][TOT= 129][ 49 %] ! [Final Evaluation][TOT= 129][ 50 %] ! [Final Evaluation][TOT= 129][ 51 %] ! [Final Evaluation][TOT= 129][ 52 %] ! [Final Evaluation][TOT= 129][ 53 %] ! [Final Evaluation][TOT= 129][ 54 %] ! [Final Evaluation][TOT= 129][ 55 %] ! [Final Evaluation][TOT= 129][ 56 %] ! [Final Evaluation][TOT= 129][ 57 %] ! [Final Evaluation][TOT= 129][ 58 %] ! [Final Evaluation][TOT= 129][ 59 %] ! [Final Evaluation][TOT= 129][ 60 %] ! [Final Evaluation][TOT= 129][ 61 %] ! [Final Evaluation][TOT= 129][ 62 %] ! [Final Evaluation][TOT= 129][ 63 %] ! [Final Evaluation][TOT= 129][ 64 %] ! [Final Evaluation][TOT= 129][ 65 %] ! [Final Evaluation][TOT= 129][ 66 %] ! [Final Evaluation][TOT= 129][ 67 %] ! [Final Evaluation][TOT= 129][ 68 %] ! [Final Evaluation][TOT= 129][ 69 %] ! [Final Evaluation][TOT= 129][ 70 %] ! [Final Evaluation][TOT= 129][ 71 %] ! [Final Evaluation][TOT= 129][ 72 %] ! [Final Evaluation][TOT= 129][ 73 %] ! [Final Evaluation][TOT= 129][ 74 %] ! [Final Evaluation][TOT= 129][ 75 %] ! [Final Evaluation][TOT= 129][ 76 %] ! [Final Evaluation][TOT= 129][ 77 %] ! [Final Evaluation][TOT= 129][ 78 %] ! [Final Evaluation][TOT= 129][ 79 %] ! [Final Evaluation][TOT= 129][ 80 %] ! [Final Evaluation][TOT= 129][ 81 %] ! [Final Evaluation][TOT= 129][ 82 %] ! [Final Evaluation][TOT= 129][ 83 %] ! [Final Evaluation][TOT= 129][ 84 %] ! [Final Evaluation][TOT= 129][ 85 %] ! [Final Evaluation][TOT= 129][ 86 %] ! [Final Evaluation][TOT= 129][ 87 %] ! [Final Evaluation][TOT= 129][ 88 %] ! [Final Evaluation][TOT= 129][ 89 %] ! [Final Evaluation][TOT= 129][ 90 %] ! [Final Evaluation][TOT= 129][ 91 %] ! [Final Evaluation][TOT= 129][ 92 %] ! [Final Evaluation][TOT= 129][ 93 %] ! [Final Evaluation][TOT= 129][ 94 %] ! [Final Evaluation][TOT= 129][ 95 %] ! [Final Evaluation][TOT= 129][ 96 %] ! [Final Evaluation][TOT= 129][ 97 %] ! [Final Evaluation][TOT= 129][ 98 %] ! [Final Evaluation][TOT= 129][ 99 %] ! [Final Evaluation][TOT= 129][100 %] 153s 153s 153s 153s OUTPUT RESULTS 153s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 153s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 153s #### File Type= MSA Format= html Name= sample_rnaseq1.html 153s 153s # Command Line: t_coffee sample_rnaseq1.fasta [PROGRAM:T-COFFEE] 153s # T-COFFEE Memory Usage: Current= 389.466 Mb, Max= 405.465 Mb 153s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 153s # T-COFFEE is available from http://www.tcoffee.org 153s # Register on: https://groups.google.com/group/tcoffee/ 153s #Single Thread 153s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=55, Nseq=5, Len=129 153s 153s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG-----AUCAUGUAAAUCUUUCGCCUUUUAUU 153s AC097725.2-33800_33915 A-CUCUGGUUUCUCUUCAAU---UGUCGAAUAAAUCUUUCGCCUUUUACU 153s X15934.1-3_121 A-GCCGUGUG-AUGAUGACA---UAGCGAACUAUUCUUUCGCCUUUUACU 153s AC000104.1-17376_17496 A-GCCAUGUG-GUGAGCACA---UAGCGAACUAUUCUUUCGCCUUUUACU 153s AL023594.2-7651_7766 G-UCAAAGCA-CUUUGCAAAAGCUAACGUAUCUGUUUCUUGCCUUUUACC 153s * * * * * * * ******** 153s 153s AC068303.10-12902_12788 AAAGAUUUCCAUGGGGAGGAACA--GUUAUGAGUCUUUAUCCAAUUUCU- 153s AC097725.2-33800_33915 AAAGAUUUCCGUGGAGAGGAACACUCUAAUGAGUCUAA-AAUAAUUUUUA 153s X15934.1-3_121 AAAGAAUACCGUGUCA-GCGUCACAAUUAGCGGCAUAC-GCUAGUUUUUG 153s AC000104.1-17376_17496 AAAGAAUACCGUGUGC-UCUCCACGCUAAGUGGCAUAC-GCCUAUUUUUG 153s AL023594.2-7651_7766 AGAAACAGCCGUUUGU-AAGGUGUGCUAAUUUGACUGU--AUAGUUUUUG 153s * * * ** * * * * * *** * 153s 153s AC068303.10-12902_12788 GAGG-CCUCGU-GUUU--CACCA--GGCU 153s AC097725.2-33800_33915 GUAG-UGCCCU-G--U--CGCAA--GACU 153s X15934.1-3_121 GAAGAGUUCUCAAUUU--UGAGG-GCUCU 153s AC000104.1-17376_17496 GAGG-GUUCCCACUUUACUGUGGGUCCCA 153s AL023594.2-7651_7766 UAA--UCUUUU-U-CU--UGAAA--CAUU 153s * 153s 153s 153s 154s 154s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 154s -full_log S [0] 154s -genepred_score S [0] nsd 154s -run_name S [0] 154s -mem_mode S [0] mem 154s -extend D [1] 1 154s -extend_mode S [1] matrix 154s -max_n_pair D [0] 10 154s -seq_name_for_quadruplet S [0] all 154s -compact S [0] default 154s -clean S [0] no 154s -do_self FL [0] 0 154s -do_normalise D [0] 1000 154s -template_file S [0] 154s -setenv S [0] 0 154s -export S [0] 0 154s -template_mode S [0] 154s -flip D [0] 0 154s -remove_template_file D [0] 0 154s -profile_template_file S [0] 154s -in S [1] Xblosum62mt 154s -seq S [1] sample_rnaseq1.fasta 154s -aln S [0] 154s -method_limits S [0] 154s -method S [0] 154s -lib S [0] 154s -profile S [0] 154s -profile1 S [0] 154s -profile2 S [0] 154s -pdb S [0] 154s -relax_lib D [0] 1 154s -filter_lib D [0] 0 154s -shrink_lib D [0] 0 154s -out_lib W_F [0] no 154s -out_lib_mode S [0] primary 154s -lib_only D [0] 0 154s -outseqweight W_F [0] no 154s -seq_source S [0] ANY 154s -cosmetic_penalty D [0] 0 154s -gapopen D [1] -25 154s -gapext D [1] -1 154s -fgapopen D [0] 0 154s -fgapext D [0] 0 154s -nomatch D [0] 0 154s -newtree W_F [0] default 154s -tree W_F [0] NO 154s -usetree R_F [0] 154s -tree_mode S [0] nj 154s -distance_matrix_mode S [1] ktup 154s -distance_matrix_sim_mode S [0] idmat_sim1 154s -quicktree FL [0] 0 154s -outfile W_F [0] default 154s -maximise FL [1] 1 154s -output S [0] aln html 154s -len D [0] 0 154s -infile R_F [0] 154s -matrix S [0] default 154s -tg_mode D [0] 1 154s -profile_mode S [0] cw_profile_profile 154s -profile_comparison S [0] profile 154s -dp_mode S [1] gotoh_pair_wise_lgp 154s -ktuple D [0] 1 154s -ndiag D [0] 0 154s -diag_threshold D [0] 0 154s -diag_mode D [0] 0 154s -sim_matrix S [0] vasiliky 154s -transform S [0] 154s -extend_seq FL [0] 0 154s -outorder S [0] input 154s -inorder S [0] aligned 154s -seqnos S [0] off 154s -case S [0] keep 154s -cpu D [0] 0 154s -ulimit D [0] -1 154s -maxnseq D [1] 10000 154s -maxlen D [0] -1 154s -sample_dp D [0] 0 154s -weight S [0] default 154s -seq_weight S [0] no 154s -align FL [1] 1 154s -mocca FL [0] 0 154s -domain FL [0] 0 154s -start D [0] 0 154s -len D [0] 0 154s -scale D [0] 0 154s -mocca_interactive FL [0] 0 154s -method_evaluate_mode S [0] default 154s -color_mode S [0] new 154s -aln_line_length D [0] 0 154s -evaluate_mode S [0] triplet 154s -get_type FL [0] 0 154s -clean_aln D [0] 0 154s -clean_threshold D [1] 1 154s -clean_iteration D [1] 1 154s -clean_evaluate_mode S [0] t_coffee_fast 154s -extend_matrix FL [0] 0 154s -prot_min_sim D [40] 40 154s -prot_max_sim D [90] 90 154s -prot_trim D [20] 20 154s -prot_min_cov D [40] 40 154s -pdb_type S [0] d 154s -pdb_min_sim D [35] 35 154s -pdb_max_sim D [100] 100 154s -pdb_min_cov D [50] 50 154s -pdb_blast_server W_F [0] EBI 154s -blast W_F [0] 154s -blast_server W_F [0] EBI 154s -pdb_db W_F [0] pdb 154s -protein_db W_F [0] uniref50 154s -method_log W_F [0] no 154s -struc_to_use S [0] 154s -cache W_F [0] use 154s -print_cache FL [0] 0 154s -align_pdb_param_file W_F [0] no 154s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 154s -external_aligner S [0] NO 154s -msa_mode S [0] tree 154s -et_mode S [0] et 154s -master S [0] no 154s -blast_nseq D [0] 0 154s -lalign_n_top D [0] 10 154s -iterate D [1] 0 154s -trim D [0] 0 154s -split D [0] 0 154s -trimfile S [0] default 154s -split D [0] 0 154s -split_nseq_thres D [0] 0 154s -split_score_thres D [0] 0 154s -check_pdb_status D [0] 0 154s -clean_seq_name D [0] 0 154s -seq_to_keep S [0] 154s -dpa_master_aln S [0] 154s -dpa_maxnseq D [1] 0 154s -dpa_min_score1 D [0] 154s -dpa_min_score2 D [0] 154s -dpa_keep_tmpfile FL [0] 0 154s -dpa_debug D [0] 0 154s -multi_core S [0] templates_jobs_relax_msa_evaluate 154s -n_core D [0] 1 154s -thread D [0] 1 154s -max_n_proc D [0] 0 154s -lib_list S [0] 154s -prune_lib_mode S [0] 5 154s -tip S [0] none 154s -rna_lib S [0] 154s -no_warning D [0] 0 154s -run_local_script D [0] 0 154s -proxy S [0] unset 154s -email S [0] 154s -clean_overaln D [0] 0 154s -overaln_param S [0] 154s -overaln_mode S [0] 154s -overaln_model S [0] 154s -overaln_threshold D [0] 0 154s -overaln_target D [0] 0 154s -overaln_P1 D [0] 0 154s -overaln_P2 D [0] 0 154s -overaln_P3 D [0] 0 154s -overaln_P4 D [0] 0 154s -exon_boundaries S [0] 154s -display D [0] 100 154s 154s INPUT FILES 154s Input File (X) blosum62mt 154s Input File (S) sample_rnaseq1.fasta Format fasta_seq 154s Input File (M) proba_pair 154s 154s Identify Master Sequences [no]: 154s 154s Master Sequences Identified 154s INPUT SEQUENCES: 5 SEQUENCES [RNA] 154s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 154s 154s blosum62mt [matrix] 154s 154s MANUAL PENALTIES: gapopen=-25 gapext=-1 154s 154s Library Total Size: [0] 154s 154s 154s 154s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 154s 154s MAKE GUIDE TREE 154s [MODE=nj][DONE] 154s 154s PROGRESSIVE_ALIGNMENT [Tree Based] 154s Group 1: AC000104.1-17376_17496 154s Group 2: AC068303.10-12902_12788 154s Group 3: AC097725.2-33800_33915 154s Group 4: AL023594.2-7651_7766 154s Group 5: X15934.1-3_121 154s 154s 154s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1600] 154s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1600] 154s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1600] 154s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1600] 154s 154s 154s 154s OUTPUT RESULTS 154s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 154s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 154s #### File Type= MSA Format= html Name= sample_rnaseq1.html 154s 154s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln [PROGRAM:T-COFFEE] 154s # T-COFFEE Memory Usage: Current= 406.848 Mb, Max= 408.019 Mb 154s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 154s # T-COFFEE is available from http://www.tcoffee.org 154s # Register on: https://groups.google.com/group/tcoffee/ 154s #Single Thread 154s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 154s 154s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 154s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 154s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 154s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 154s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 154s * * * * ** **** ******** 154s 154s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 154s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 154s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 154s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 154s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 154s * * * ** * * * * * *** 154s 154s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 154s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 154s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 154s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 154s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 154s * * * 154s 154s 154s 154s 154s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 154s -full_log S [0] 154s -genepred_score S [0] nsd 154s -run_name S [0] 154s -mem_mode S [0] mem 154s -extend D [1] 1 154s -extend_mode S [1] matrix 154s -max_n_pair D [0] 10 154s -seq_name_for_quadruplet S [0] all 154s -compact S [0] default 154s -clean S [0] no 154s -do_self FL [0] 0 154s -do_normalise D [0] 1000 154s -template_file S [0] 154s -setenv S [0] 0 154s -export S [0] 0 154s -template_mode S [0] 154s -flip D [0] 0 154s -remove_template_file D [0] 0 154s -profile_template_file S [0] 154s -in S [1] Xblosum62mt 154s -seq S [1] sample_rnaseq1.fasta 154s -aln S [0] 154s -method_limits S [0] 154s -method S [0] 154s -lib S [0] 154s -profile S [0] 154s -profile1 S [0] 154s -profile2 S [0] 154s -pdb S [0] 154s -relax_lib D [0] 1 154s -filter_lib D [0] 0 154s -shrink_lib D [0] 0 154s -out_lib W_F [0] no 154s -out_lib_mode S [0] primary 154s -lib_only D [0] 0 154s -outseqweight W_F [0] no 154s -seq_source S [0] ANY 154s -cosmetic_penalty D [0] 0 154s -gapopen D [1] -25 154s -gapext D [1] -1 154s -fgapopen D [0] 0 154s -fgapext D [0] 0 154s -nomatch D [0] 0 154s -newtree W_F [0] default 154s -tree W_F [0] NO 154s -usetree R_F [0] 154s -tree_mode S [0] nj 154s -distance_matrix_mode S [1] ktup 154s -distance_matrix_sim_mode S [0] idmat_sim1 154s -quicktree FL [0] 0 154s -outfile W_F [0] default 154s -maximise FL [1] 1 154s -output S [0] aln html 154s -len D [0] 0 154s -infile R_F [0] 154s -matrix S [0] default 154s -tg_mode D [0] 1 154s -profile_mode S [0] cw_profile_profile 154s -profile_comparison S [0] profile 154s -dp_mode S [1] gotoh_pair_wise_lgp 154s -ktuple D [0] 1 154s -ndiag D [1] 10 154s -diag_threshold D [0] 0 154s -diag_mode D [0] 0 154s -sim_matrix S [0] vasiliky 154s -transform S [0] 154s -extend_seq FL [0] 0 154s -outorder S [0] input 154s -inorder S [0] aligned 154s -seqnos S [0] off 154s -case S [0] keep 154s -cpu D [0] 0 154s -ulimit D [0] -1 154s -maxnseq D [1] 10000 154s -maxlen D [0] -1 154s -sample_dp D [0] 0 154s -weight S [0] default 154s -seq_weight S [0] no 154s -align FL [1] 1 154s -mocca FL [0] 0 154s -domain FL [0] 0 154s -start D [0] 0 154s -len D [0] 0 154s -scale D [0] 0 154s -mocca_interactive FL [0] 0 154s -method_evaluate_mode S [0] default 154s -color_mode S [0] new 154s -aln_line_length D [0] 0 154s -evaluate_mode S [0] triplet 154s -get_type FL [0] 0 154s -clean_aln D [0] 0 154s -clean_threshold D [1] 1 154s -clean_iteration D [1] 1 154s -clean_evaluate_mode S [0] t_coffee_fast 154s -extend_matrix FL [0] 0 154s -prot_min_sim D [40] 40 154s -prot_max_sim D [90] 90 154s -prot_trim D [20] 20 154s -prot_min_cov D [40] 40 154s -pdb_type S [0] d 154s -pdb_min_sim D [35] 35 154s -pdb_max_sim D [100] 100 154s -pdb_min_cov D [50] 50 154s -pdb_blast_server W_F [0] EBI 154s -blast W_F [0] 154s -blast_server W_F [0] EBI 154s -pdb_db W_F [0] pdb 154s -protein_db W_F [0] uniref50 154s -method_log W_F [0] no 154s -struc_to_use S [0] 154s -cache W_F [0] use 154s -print_cache FL [0] 0 154s -align_pdb_param_file W_F [0] no 154s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 154s -external_aligner S [0] NO 154s -msa_mode S [0] tree 154s -et_mode S [0] et 154s -master S [0] no 154s -blast_nseq D [0] 0 154s -lalign_n_top D [0] 10 154s -iterate D [1] 0 154s -trim D [0] 0 154s -split D [0] 0 154s -trimfile S [0] default 154s -split D [0] 0 154s -split_nseq_thres D [0] 0 154s -split_score_thres D [0] 0 154s -check_pdb_status D [0] 0 154s -clean_seq_name D [0] 0 154s -seq_to_keep S [0] 154s -dpa_master_aln S [0] 154s -dpa_maxnseq D [1] 0 154s -dpa_min_score1 D [0] 154s -dpa_min_score2 D [0] 154s -dpa_keep_tmpfile FL [0] 0 154s -dpa_debug D [0] 0 154s -multi_core S [0] templates_jobs_relax_msa_evaluate 154s -n_core D [0] 1 154s -thread D [0] 1 154s -max_n_proc D [0] 0 154s -lib_list S [0] 154s -prune_lib_mode S [0] 5 154s -tip S [0] none 154s -rna_lib S [0] 154s -no_warning D [0] 0 154s -run_local_script D [0] 0 154s -proxy S [0] unset 154s -email S [0] 154s -clean_overaln D [0] 0 154s -overaln_param S [0] 154s -overaln_mode S [0] 154s -overaln_model S [0] 154s -overaln_threshold D [0] 0 154s -overaln_target D [0] 0 154s -overaln_P1 D [0] 0 154s -overaln_P2 D [0] 0 154s -overaln_P3 D [0] 0 154s -overaln_P4 D [0] 0 154s -exon_boundaries S [0] 154s -display D [0] 100 154s 154s INPUT FILES 154s Input File (X) blosum62mt 154s Input File (S) sample_rnaseq1.fasta Format fasta_seq 154s Input File (M) proba_pair 154s 154s Identify Master Sequences [no]: 154s 154s Master Sequences Identified 154s INPUT SEQUENCES: 5 SEQUENCES [RNA] 154s Input File sample_rnaseq1.fasta Seq AC000104.1-17376_17496 Length 121 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq AC068303.10-12902_12788 Length 115 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq AC097725.2-33800_33915 Length 116 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq AL023594.2-7651_7766 Length 116 type RNA Struct Unchecked 154s Input File sample_rnaseq1.fasta Seq X15934.1-3_121 Length 119 type RNA Struct Unchecked 154s 154s blosum62mt [matrix] 154s 154s MANUAL PENALTIES: gapopen=-25 gapext=-1 154s 154s Library Total Size: [0] 154s 154s 154s 154s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 154s 154s MAKE GUIDE TREE 154s [MODE=nj][DONE] 154s 154s PROGRESSIVE_ALIGNMENT [Tree Based] 154s Group 1: AC000104.1-17376_17496 154s Group 2: AC068303.10-12902_12788 154s Group 3: AC097725.2-33800_33915 154s Group 4: AL023594.2-7651_7766 154s Group 5: X15934.1-3_121 154s 154s 154s Group 6: [Group 5 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 123][PID:1643] 154s Group 7: [Group 3 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 121][PID:1643] 154s Group 8: [Group 7 ( 2 seq)] with [Group 6 ( 2 seq)]-->[Len= 126][PID:1643] 154s Group 9: [Group 4 ( 1 seq)] with [Group 8 ( 4 seq)]-->[Len= 131][PID:1643] 154s 154s 154s 154s OUTPUT RESULTS 154s #### File Type= GUIDE_TREE Format= newick Name= sample_rnaseq1.dnd 154s #### File Type= MSA Format= aln Name= sample_rnaseq1.aln 154s #### File Type= MSA Format= html Name= sample_rnaseq1.html 154s 154s # Command Line: t_coffee sample_rnaseq1.fasta -mode quickaln -ndiag 10 [PROGRAM:T-COFFEE] 154s # T-COFFEE Memory Usage: Current= 406.849 Mb, Max= 408.021 Mb 154s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 154s # T-COFFEE is available from http://www.tcoffee.org 154s # Register on: https://groups.google.com/group/tcoffee/ 154s #Single Thread 154s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: quickaln ], CPU=0.00 sec, SCORE=3094, Nseq=5, Len=131 154s 154s AC068303.10-12902_12788 AACUCUUGUUUCUCUUCAG--AUCAUGUAAAUC--UUUC--GCCUUUUAU 154s AC097725.2-33800_33915 -ACUCUGGUUUCUCUUCAAUUGUCGAAUAAAUC--UUUC--GCCUUUUAC 154s X15934.1-3_121 AGC-CGUGUGA-UGAUGACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 154s AC000104.1-17376_17496 AGC-CAUGUGG-UGAGCACAUAGCGAACUAUUC--UUUC--GCCUUUUAC 154s AL023594.2-7651_7766 -G-UCAAAGCACUUUGCAAA-AGCUAACGUAUCUGUUUCUUGCCUUUUAC 154s * * * * ** **** ******** 154s 154s AC068303.10-12902_12788 UAAAGAUUUCCAUGGG-GAGGAACA--GUUAUGAGUCUUUAUCCAAUUUC 154s AC097725.2-33800_33915 UAAAGAUUUCCGUGGA-GAGGAACACUCUAAUGAGUCUAAAAUAAUUUUU 154s X15934.1-3_121 UAAAGAAUACCGUGU--CAGCGUCACAAUUA-GCGGCAUACGCUAGUUUU 154s AC000104.1-17376_17496 UAAAGAAUACCGUGUG-CU-CUCCACGCUAA-GUGGCAUACGCCUAUUUU 154s AL023594.2-7651_7766 CAGAAACAGCCGUUUGUAAGGUGUGC--UAAUUUGACUGUA--UAGUUUU 154s * * * ** * * * * * *** 154s 154s AC068303.10-12902_12788 UG--AG-G-CCUCGUGUUUCACCAGG---CU 154s AC097725.2-33800_33915 AGU-AGUG-CC-C-UG--UCGCAAGA---CU 154s X15934.1-3_121 UGGAAGAGUUCUCAAUUU--UGAGGG-CUCU 154s AC000104.1-17376_17496 UGG-AGGGUUCCCACUUUACUGUGGGUCCCA 154s AL023594.2-7651_7766 UGUAA----UC---UUUUUCU-UGAAACAUU 154s * * * 154s 154s 154s 154s 154s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 154s -full_log S [0] 154s -genepred_score S [0] nsd 154s -run_name S [0] 154s -mem_mode S [0] mem 154s -extend D [1] 1 154s -extend_mode S [0] very_fast_triplet 154s -max_n_pair D [0] 10 154s -seq_name_for_quadruplet S [0] all 154s -compact S [0] default 154s -clean S [0] no 154s -do_self FL [0] 0 154s -do_normalise D [0] 1000 154s -template_file S [0] 154s -setenv S [0] 0 154s -export S [0] 0 154s -template_mode S [0] 154s -flip D [0] 0 154s -remove_template_file D [0] 0 154s -profile_template_file S [0] 154s -in S [0] 154s -seq S [1] proteases_small.fasta 154s -aln S [1] g0.aln g5.aln g10.aln g15.aln 154s -method_limits S [0] 154s -method S [0] 154s -lib S [0] 154s -profile S [0] 154s -profile1 S [0] 154s -profile2 S [0] 154s -pdb S [0] 154s -relax_lib D [0] 1 154s -filter_lib D [0] 0 154s -shrink_lib D [0] 0 154s -out_lib W_F [0] no 154s -out_lib_mode S [0] primary 154s -lib_only D [0] 0 154s -outseqweight W_F [0] no 154s -seq_source S [0] ANY 154s -cosmetic_penalty D [0] 0 154s -gapopen D [0] 0 154s -gapext D [0] 0 154s -fgapopen D [0] 0 154s -fgapext D [0] 0 154s -nomatch D [0] 0 154s -newtree W_F [0] default 154s -tree W_F [0] NO 154s -usetree R_F [0] 154s -tree_mode S [0] nj 154s -distance_matrix_mode S [0] ktup 154s -distance_matrix_sim_mode S [0] idmat_sim1 154s -quicktree FL [0] 0 154s -outfile W_F [0] default 154s -maximise FL [1] 1 154s -output S [1] clustalw html 154s -len D [0] 0 154s -infile R_F [0] 154s -matrix S [0] default 154s -tg_mode D [0] 1 154s -profile_mode S [0] cw_profile_profile 154s -profile_comparison S [0] profile 154s -dp_mode S [0] linked_pair_wise 154s -ktuple D [0] 1 154s -ndiag D [0] 0 154s -diag_threshold D [0] 0 154s -diag_mode D [0] 0 154s -sim_matrix S [0] vasiliky 154s -transform S [0] 154s -extend_seq FL [0] 0 154s -outorder S [0] input 154s -inorder S [0] aligned 154s -seqnos S [0] off 154s -case S [0] keep 154s -cpu D [0] 0 154s -ulimit D [0] -1 154s -maxnseq D [0] -1 154s -maxlen D [0] -1 154s -sample_dp D [0] 0 154s -weight S [0] default 154s -seq_weight S [0] no 154s -align FL [1] 1 154s -mocca FL [0] 0 154s -domain FL [0] 0 154s -start D [0] 0 154s -len D [0] 0 154s -scale D [0] 0 154s -mocca_interactive FL [0] 0 154s -method_evaluate_mode S [0] default 154s -color_mode S [0] new 154s -aln_line_length D [0] 0 154s -evaluate_mode S [0] triplet 154s -get_type FL [0] 0 154s -clean_aln D [0] 0 154s -clean_threshold D [1] 1 154s -clean_iteration D [1] 1 154s -clean_evaluate_mode S [0] t_coffee_fast 154s -extend_matrix FL [0] 0 154s -prot_min_sim D [40] 40 154s -prot_max_sim D [90] 90 154s -prot_trim D [20] 20 154s -prot_min_cov D [40] 40 154s -pdb_type S [0] d 154s -pdb_min_sim D [35] 35 154s -pdb_max_sim D [100] 100 154s -pdb_min_cov D [50] 50 154s -pdb_blast_server W_F [0] EBI 154s -blast W_F [0] 154s -blast_server W_F [0] EBI 154s -pdb_db W_F [0] pdb 154s -protein_db W_F [0] uniref50 154s -method_log W_F [0] no 154s -struc_to_use S [0] 154s -cache W_F [0] use 154s -print_cache FL [0] 0 154s -align_pdb_param_file W_F [0] no 154s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 154s -external_aligner S [0] NO 154s -msa_mode S [0] tree 154s -et_mode S [0] et 154s -master S [0] no 154s -blast_nseq D [0] 0 154s -lalign_n_top D [0] 10 154s -iterate D [0] 0 154s -trim D [0] 0 154s -split D [0] 0 154s -trimfile S [0] default 154s -split D [0] 0 154s -split_nseq_thres D [0] 0 154s -split_score_thres D [0] 0 154s -check_pdb_status D [0] 0 154s -clean_seq_name D [0] 0 154s -seq_to_keep S [0] 154s -dpa_master_aln S [0] 154s -dpa_maxnseq D [0] 0 154s -dpa_min_score1 D [0] 154s -dpa_min_score2 D [0] 154s -dpa_keep_tmpfile FL [0] 0 154s -dpa_debug D [0] 0 154s -multi_core S [0] templates_jobs_relax_msa_evaluate 154s -n_core D [0] 1 154s -thread D [0] 1 154s -max_n_proc D [0] 0 154s -lib_list S [0] 154s -prune_lib_mode S [0] 5 154s -tip S [0] none 154s -rna_lib S [0] 154s -no_warning D [0] 0 154s -run_local_script D [0] 0 154s -proxy S [0] unset 154s -email S [0] 154s -clean_overaln D [0] 0 154s -overaln_param S [0] 154s -overaln_mode S [0] 154s -overaln_model S [0] 154s -overaln_threshold D [0] 0 154s -overaln_target D [0] 0 154s -overaln_P1 D [0] 0 154s -overaln_P2 D [0] 0 154s -overaln_P3 D [0] 0 154s -overaln_P4 D [0] 0 154s -exon_boundaries S [0] 154s -display D [0] 100 154s 154s INPUT FILES 154s Input File (S) proteases_small.fasta Format fasta_seq 154s Input File (A) g0.aln Format clustal_aln 154s Input File (A) g5.aln Format clustal_aln 154s Input File (A) g10.aln Format clustal_aln 154s Input File (A) g15.aln Format clustal_aln 155s 155s Identify Master Sequences [no]: 155s 155s Master Sequences Identified 155s INPUT SEQUENCES: 19 SEQUENCES [PROTEIN] 155s Input File proteases_small.fasta Seq sp|O35205|GRAK_MOUSE Length 263 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P00757|KLKB4_MOUSE Length 256 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P00773|ELA1_RAT Length 266 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P03953|CFAD_MOUSE Length 259 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P07338|CTRB1_RAT Length 263 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P08246|ELNE_HUMAN Length 267 type PROTEIN Struct Unchecked 155s Input File proteases_small.fasta Seq sp|P08884|GRAE_MOUSE Length 248 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P20160|CAP7_HUMAN Length 251 type PROTEIN Struct Unchecked 155s Input File proteases_small.fasta Seq sp|P21844|MCPT5_MOUSE Length 247 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P29786|TRY3_AEDAE Length 254 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P35037|TRY3_ANOGA Length 275 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|P80015|CAP7_PIG Length 219 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|Q00871|CTRB1_PENVA Length 271 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|Q03238|GRAM_RAT Length 258 type PROTEIN Struct Unchecked 155s Input File proteases_small.fasta Seq sp|Q06606|GRZ2_RAT Length 248 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|Q6H321|KLK2_HORSE Length 261 type PROTEIN Struct Unchecked 155s Input File proteases_small.fasta Seq sp|Q7YRZ7|GRAA_BOVIN Length 258 type PROTEIN Struct Unchecked 155s Input File g0.aln Seq sp|Q91VE3|KLK7_MOUSE Length 249 type PROTEIN Struct Unchecked 155s Input File proteases_small.fasta Seq sp|Q9Y5K2|KLK4_HUMAN Length 254 type PROTEIN Struct Unchecked 155s 155s Multi Core Mode: 1 processors: 155s 155s --- Process Method/Library/Aln Sproteases_small.fasta 155s xxx Retrieved Sproteases_small.fasta 155s --- Process Method/Library/Aln Ag0.aln 155s xxx Retrieved Ag0.aln 155s --- Process Method/Library/Aln Ag5.aln 155s xxx Retrieved Ag5.aln 155s --- Process Method/Library/Aln Ag10.aln 155s xxx Retrieved Ag10.aln 155s --- Process Method/Library/Aln Ag15.aln 155s xxx Retrieved Ag15.aln 155s 155s All Methods Retrieved 155s 155s MANUAL PENALTIES: gapopen=0 gapext=0 155s 155s Library Total Size: [12058] 155s 155s Library Relaxation: Multi_proc [1] 155s 155s ! [Relax Library][TOT= 19][ 0 %] ! [Relax Library][TOT= 19][ 10 %] ! [Relax Library][TOT= 19][ 15 %] ! [Relax Library][TOT= 19][ 21 %] ! [Relax Library][TOT= 19][ 26 %] ! [Relax Library][TOT= 19][ 31 %] ! [Relax Library][TOT= 19][ 36 %] ! [Relax Library][TOT= 19][ 42 %] ! [Relax Library][TOT= 19][ 47 %] ! [Relax Library][TOT= 19][ 52 %] ! [Relax Library][TOT= 19][ 57 %] ! [Relax Library][TOT= 19][ 63 %] ! [Relax Library][TOT= 19][ 68 %] ! [Relax Library][TOT= 19][ 73 %] ! [Relax Library][TOT= 19][ 78 %] ! [Relax Library][TOT= 19][ 84 %] ! [Relax Library][TOT= 19][ 89 %] ! [Relax Library][TOT= 19][ 94 %] ! [Relax Library][TOT= 19][100 %] 155s 155s Relaxation Summary: [12058]--->[12058] 155s 155s 155s 155s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 155s 155s MAKE GUIDE TREE 155s [MODE=nj][DONE] 155s 155s PROGRESSIVE_ALIGNMENT [Tree Based] 155s Group 1: sp|O35205|GRAK_MOUSE 155s Group 2: sp|P00757|KLKB4_MOUSE 155s Group 3: sp|P00773|ELA1_RAT 155s Group 4: sp|P03953|CFAD_MOUSE 155s Group 5: sp|P07338|CTRB1_RAT 155s Group 6: sp|P08246|ELNE_HUMAN 155s Group 7: sp|P08884|GRAE_MOUSE 155s Group 8: sp|P20160|CAP7_HUMAN 155s Group 9: sp|P21844|MCPT5_MOUSE 155s Group 10: sp|P29786|TRY3_AEDAE 155s Group 11: sp|P35037|TRY3_ANOGA 155s Group 12: sp|P80015|CAP7_PIG 155s Group 13: sp|Q00871|CTRB1_PENVA 155s Group 14: sp|Q03238|GRAM_RAT 155s Group 15: sp|Q06606|GRZ2_RAT 155s Group 16: sp|Q6H321|KLK2_HORSE 155s Group 17: sp|Q7YRZ7|GRAA_BOVIN 155s Group 18: sp|Q91VE3|KLK7_MOUSE 155s Group 19: sp|Q9Y5K2|KLK4_HUMAN 155s 155s #Single Thread 155s 155s Group 20: [Group 16 ( 1 seq)] with [Group 2 ( 1 seq)]-->[Len= 262][PID:1686]#Single Thread 155s #Single Thread 155s 155s Group 21: [Group 19 ( 1 seq)] with [Group 18 ( 1 seq)]-->[Len= 258][PID:1686] 155s Group 22: [Group 21 ( 2 seq)] with [Group 20 ( 2 seq)]-->[Len= 272][PID:1686]#Single Thread 155s 155s Group 23: [Group 4 ( 1 seq)] with [Group 1 ( 1 seq)]-->[Len= 268][PID:1686]#Single Thread 155s 155s Group 24: [Group 9 ( 1 seq)] with [Group 3 ( 1 seq)]-->[Len= 270][PID:1686]#Single Thread 155s 155s Group 25: [Group 24 ( 2 seq)] with [Group 23 ( 2 seq)]-->[Len= 285][PID:1686]#Single Thread 155s 155s Group 26: [Group 15 ( 1 seq)] with [Group 7 ( 1 seq)]-->[Len= 251][PID:1686]#Single Thread 155s 155s Group 27: [Group 14 ( 1 seq)] with [Group 26 ( 2 seq)]-->[Len= 268][PID:1686]#Single Thread 155s 155s Group 28: [Group 27 ( 3 seq)] with [Group 25 ( 4 seq)]-->[Len= 291][PID:1686]#Single Thread 155s 155s Group 29: [Group 17 ( 1 seq)] with [Group 28 ( 7 seq)]-->[Len= 295][PID:1686]#Single Thread 155s 155s Group 30: [Group 12 ( 1 seq)] with [Group 8 ( 1 seq)]-->[Len= 252][PID:1686]#Single Thread 155s 155s Group 31: [Group 30 ( 2 seq)] with [Group 6 ( 1 seq)]-->[Len= 272][PID:1686]#Single Thread 155s 155s Group 32: [Group 13 ( 1 seq)] with [Group 31 ( 3 seq)]-->[Len= 300][PID:1686]#Single Thread 155s 155s Group 33: [Group 32 ( 4 seq)] with [Group 29 ( 8 seq)]-->[Len= 329][PID:1686]#Single Thread 155s 155s Group 34: [Group 33 ( 12 seq)] with [Group 22 ( 4 seq)]-->[Len= 343][PID:1686]#Single Thread 155s 155s Group 35: [Group 11 ( 1 seq)] with [Group 10 ( 1 seq)]-->[Len= 275][PID:1686]#Single Thread 155s 155s Group 36: [Group 35 ( 2 seq)] with [Group 5 ( 1 seq)]-->[Len= 286][PID:1686]#Single Thread 155s 155s Group 37: [Group 36 ( 3 seq)] with [Group 34 ( 16 seq)]-->[Len= 351][PID:1686] 155s 155s 155s ! 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[Final Evaluation][TOT= 351][100 %] 155s 155s #Single Thread 155s CLUSTAL FORMAT for T-COFFEE Version_13.41.0.28bdc39 [http://www.tcoffee.org] [MODE: ], CPU=0.00 sec, SCORE=74, Nseq=19, Len=351 155s 155s sp|Q06606|GRZ2_RAT M----------F-LFLFFLVAI-----LPV--N-------TE-GG----- 155s sp|P08884|GRAE_MOUSE M----------P-PVLILLTLL-----LPL--G-------AG-AE----- 155s sp|P21844|MCPT5_MOUSE MH---------L-LTLHLLLLL-----LGS--S-------TK-A------ 155s sp|O35205|GRAK_MOUSE MR---------F-SSWALVSLV-----AGVY-M-------SS-EC----F 155s sp|Q9Y5K2|KLK4_HUMAN MATAGNPW-G-W-FLGY-LILG-----VAG--S-------LV-S------ 155s sp|Q7YRZ7|GRAA_BOVIN MN-IPF---PFSFPPAICLLLI-----PGV--F-------PV-S------ 155s sp|P29786|TRY3_AEDAE M---N--Q--FL-FVSFCALLD-----SA-------K-V-SA-AT--L-S 155s sp|P35037|TRY3_ANOGA MI-SN--KIAIL-LAVLVVAVACAQARVA----QQHR-SVQALPR--FLP 155s sp|P03953|CFAD_MOUSE MH-S-----S-V-YFVALVILG-----AAVC-A--------A-Q-----P 155s sp|P20160|CAP7_HUMAN ----MTRL-T-V-LALLAGLLA-----SS-R---------AG-SS----P 155s sp|P80015|CAP7_PIG -------------------------------------------------- 155s sp|P08246|ELNE_HUMAN MT-LGRRL-A-C-L-FLACVLP-----AL-L---------LG-GT----A 155s sp|Q00871|CTRB1_PENVA ----MIGK-L-S-LLLVCVAVA-----SGNPAAG--KPWHWKSPKPLVDP 155s sp|P07338|CTRB1_RAT M------A--FL-WLVSCFALV-----GA-------T-FGCGVPT--IQP 155s sp|P00773|ELA1_RAT ML---------R-FLVFASLVL-----YGH--S-------TQ-DF----P 155s sp|Q91VE3|KLK7_MOUSE M-----GV---W-LLSL-ITVL-----LSL--A-------LETA------ 155s sp|Q6H321|KLK2_HORSE M----------W-FLVLCLDLS-----LGE--T-------GA-L-----P 155s sp|P00757|KLKB4_MOUSE M----------W-FLILFLALS-----LGG--I-------DA-A-----P 155s sp|Q03238|GRAM_RAT L-------------LLL-LA-L-----KTL--W-------AV-GN----R 155s 155s 155s sp|Q06606|GRZ2_RAT --------EIIWGTESKPHSRPYM-AFIKFYDSNSEPHHCGGFLVAKDIV 155s sp|P08884|GRAE_MOUSE --------EIIGGHVVKPHSRPYM-AFVKSVDIEGNRRYCGGFLVQDDFV 155s sp|P21844|MCPT5_MOUSE -------GEIIGGTECIPHSRPYM-AYLEIVTSENYLSACSGFLIRRNFV 155s sp|O35205|GRAK_MOUSE ---H---TEIIGGREVQPHSRPFM-ASIQ-YRSK---HICGGVLIHPQWV 155s sp|Q9Y5K2|KLK4_HUMAN G-SC---SQIINGEDCSPHSQPWQAALVM--ENE---LFCSGVLVHPQWV 155s sp|Q7YRZ7|GRAA_BOVIN ---C---EGIIGGNEVAPHTRRYM-ALIK-G-L----KLCAGALIKENWV 155s sp|P29786|TRY3_AEDAE S------GRIVGGFQIDIAEVPHQ-VSLQ-RSGR---HFCGGSIISPRWV 155s sp|P35037|TRY3_ANOGA RPKYDVGHRIVGGFEIDVSETPYQ-VSLQ-YFNS---HRCGGSVLNSKWI 155s sp|P03953|CFAD_MOUSE ---R---GRILGGQEAAAHARPYM-ASVQ-VNGT---HVCGGTLLDEQWV 155s sp|P20160|CAP7_HUMAN L-----L-DIVGGRKARPRQFPFL-ASIQ-NQGR---HFCGGALIHARFV 155s sp|P80015|CAP7_PIG ---------IVGGRRAQPQEFPFL-ASIQ-KQGR---PFCAGALVHPRFV 155s sp|P08246|ELNE_HUMAN L-----ASEIVGGRRARPHAWPFM-VSLQ-LRGG---HFCGATLIAPNFV 155s sp|Q00871|CTRB1_PENVA RIHVNATPRIVGGVEATPHSWPHQ-AALF-IDDM---YFCGGSLISSEWV 155s sp|P07338|CTRB1_RAT VL--TGLSRIVNGEDAIPGSWPWQ-VSL--QDKTG-FHFCGGSLISEDWV 155s sp|P00773|ELA1_RAT E--TN--ARVVGGAEARRNSWPSQ-ISLQYLSGGSWYHTCGGTLIRRNWV 155s sp|Q91VE3|KLK7_MOUSE G-QG---ERIIDGYKCKEGSHPWQVALLK--GNQ---LHCGGVLVDKYWV 155s sp|Q6H321|KLK2_HORSE P-IQ---SRIIGGWECEKHSKPWQVAVYH--QGH---FQCGGVLVHPQWV 155s sp|P00757|KLKB4_MOUSE P-VQ---SQV----DCE-NSQPWHVAVYR--FNK---YQCGGVLLDRNWV 155s sp|Q03238|GRAM_RAT ---FE--AQIIGGREAVPHSRPYM-VSLQ-NTK-S--HMCGGVLVHQKWV 155s : *.. :: : 155s 155s sp|Q06606|GRZ2_RAT MTAAHCN----GR---NIKVTLGAHNIK-KQE-NTQVISVVKAKPHENYD 155s sp|P08884|GRAE_MOUSE LTAAHCR----NR---TMTVTLGAHNIKAKEE-TQQIIPVAKAIPHPDYN 155s sp|P21844|MCPT5_MOUSE LTAAHC--A-G-R---SITVLLGAHNKTSKED-TWQKLEVEKQFLHPKYD 155s sp|O35205|GRAK_MOUSE LTAAHCYSW-FPR-GHSPTVVLGAHSLSKNEP-MKQTFEIKKFIPFSRLQ 155s sp|Q9Y5K2|KLK4_HUMAN LSAAHCF---Q-N---SYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYN 155s sp|Q7YRZ7|GRAA_BOVIN LTAAHCD---L-K-G-NPQVILGAHSTSHKEK-LDQVFSIKKAIPYPCFD 155s sp|P29786|TRY3_AEDAE LTRAHCTTN-T-DPA-AYTIRAGSTDRTNGGI-IV---KVKSVIPHPQYN 155s sp|P35037|TRY3_ANOGA LTAAHCTVN-L-QPS-SLAVRLGSSRHASGGT-VV---RVARVLEHPNYD 155s sp|P03953|CFAD_MOUSE LSAAHCMDG-VTD-DDSVQVLLGAHSLSAPEP-YKRWYDVQSVVPHPGSR 155s sp|P20160|CAP7_HUMAN MTAASCFQS-Q-NPG-VSTVVLGAYDLRRRER-QSRQTFSISSMSENGYD 155s sp|P80015|CAP7_PIG LTAASCFRG-K-NSG-SASVVLGAYDLRQQE--QSRQTFSIRSISQNGYD 155s sp|P08246|ELNE_HUMAN MSAAHCVAN-V-NVR-AVRVVLGAHNLSRRE--PTRQVFAVQRIFENGYD 155s sp|Q00871|CTRB1_PENVA LTAAHCMDG-A-GF---VEVVLGAHNIRQNEA-SQVSITSTDFFTHENWN 155s sp|P07338|CTRB1_RAT VTAAHC--G-V-KT--SDVVVAGEFDQGSDEE-NIQVLKIAQVFKNPKFN 155s sp|P00773|ELA1_RAT MTAAHCV-S-SQM---TFRVVVGDHNLSQNDG-TEQYVSVQKIMVHPTWN 155s sp|Q91VE3|KLK7_MOUSE LTAAHCK---M-G---QYQVQLGSDKI-GDQ--SAQKIKATKSFRHPGYS 155s sp|Q6H321|KLK2_HORSE LTAAHCM---S-D---DYQIWLGRHNLSEDED-TAQFHQVSDSFLDPQFD 155s sp|P00757|KLKB4_MOUSE LTAAHCY---N-D---KYQVWLGKNNFLEDEP-SDQHRLVSKAIPHPDFN 155s sp|Q03238|GRAM_RAT LTAAHCL-SEPLQ---QLKLVFGLHSLHDPQD-PGLTFYIKQAIKHPGYN 155s :: * * : * 155s 155s sp|Q06606|GRZ2_RAT RD-SH----------F--NDIMLLKLERKAQLNGVVKTIALPR-SQDWVK 155s sp|P08884|GRAE_MOUSE AT-AF----------F--SDIMLLKLESKAKRTKAVRPLKLPR-PNARVK 155s sp|P21844|MCPT5_MOUSE EN-LV----------V--HDIMLLKLKEKAKLTLGVGTLPLSA-NFNFIP 155s sp|O35205|GRAK_MOUSE SG-SA----------S--HDIMLIKLRTAAELNKNVQLLHLG--SKNYLR 155s sp|Q9Y5K2|KLK4_HUMAN R---------PLL---A-NDLMLIKLDESVSESDTIRSISIAS-QCPTA- 155s sp|Q7YRZ7|GRAA_BOVIN PQ-TF----------E--GDLQLLQLEGKATMTKAVGILQLPR-TEDDVK 155s sp|P29786|TRY3_AEDAE GD-TY----------N--YDFSLLELDESIGFSRSIEAIALPD-ASETVA 155s sp|P35037|TRY3_ANOGA DS-TI----------D--YDFSLMELESELTFSDVVQPVSLPD-QDEAVE 155s sp|P03953|CFAD_MOUSE PD-SL----------E--DDLILFKLSQNASLGPHVRPLPLQY-EDKEVE 155s sp|P20160|CAP7_HUMAN PQQNL-------------NDLMLLQLDREANLTSSVTILPLPL-QNATVE 155s sp|P80015|CAP7_PIG PRQNL-------------NDVLLLQLDREARLTPSVALVPLPP-QNATVE 155s sp|P08246|ELNE_HUMAN PV-NL----------L--NDIVILQLNGSATINANVQVAQLPA-QGRRLG 155s sp|Q00871|CTRB1_PENVA SW-LL----------T--NDIALIRLPSPVSLNSNIKTVKLP--S-SDVS 155s sp|P07338|CTRB1_RAT MF-TV----------R--NDITLLKLATPAQFSETVSAVCLPN-VDDDFP 155s sp|P00773|ELA1_RAT SN-NV----------AAGYDIALLRLAQSVTLNNYVQLAVLPQ-EGTILA 155s sp|Q91VE3|KLK7_MOUSE T---------KTH---V-NDIMLVRLDEPVKMSSKVEAVQLPE-HCEPP- 155s sp|Q6H321|KLK2_HORSE LS-LLKKKYLRPYDDIS-HDLMLLRLAQPARITDAVKILDLPT-QEPKL- 155s sp|P00757|KLKB4_MOUSE MS-LLNEHTPQPEDDYS-NDLMLLRLSKPADITDVVKPITLPT-EEPKL- 155s sp|Q03238|GRAM_RAT LK--Y----------E--NDLALLKLDGRVKPSKNVKPLALPRKPRDKPA 155s *. :..* : : 155s 155s sp|Q06606|GRZ2_RAT PGQVCTVAGWG--RL-ANCTSSNTLQEVNLEVQKGQKCQ-DM-----SED 155s sp|P08884|GRAE_MOUSE PGDVCSVAGWGSRSI-NDTKASARLREAQLVIQEDEECK-KR-----FRH 155s sp|P21844|MCPT5_MOUSE PGRMCRAVGWG-RTN-VNEPASDTLQEVKMRLQEPQACKHF-TSF-RH-N 155s sp|O35205|GRAK_MOUSE DGTKCQVTGWGTTKP-DLLTASDTLREVTVTIISRKRCN-S-QSYYNHKP 155s sp|Q9Y5K2|KLK4_HUMAN -GNSCLVSGWGLLAN--G-RMPTVLQCVNVSVVSEEVCS-K--L---YDP 155s sp|Q7YRZ7|GRAA_BOVIN PHTKCHVAGWGSTKK-DACQMSNALREANVTVIDRKICN-DAQH-YNFNP 155s sp|P29786|TRY3_AEDAE DGAMCTVSGWGDTKN-VF-EMNTLLRAVNVPSYNQAECA-A--A-LVNVV 155s sp|P35037|TRY3_ANOGA DGTMTIVSGWGNTQS-AA-ESNAILRAANVPTVNQKECT-I--A-YSSSG 155s sp|P03953|CFAD_MOUSE PGTLCDVAGWGVVTH-AG-RRPDVLHQLRVSIMNRTTCN-L--RTYH-DG 155s sp|P20160|CAP7_HUMAN AGTRCQVAGWGSQRS-GG-RLSRFPRFVNVTVTPEDQCR-P--N---N-V 155s sp|P80015|CAP7_PIG AGTNCQVAGWGTQRL-RR-LFSRFPRVLNVTVTS-NPCL-P--R---D-M 155s sp|P08246|ELNE_HUMAN NGVQCLAMGWGLLGR-NR-GIASVLQELNVTVVT-SLCR-R--S---N-V 155s sp|Q00871|CTRB1_PENVA VGTTVTPTGWGRPSD-SASGISDVLRQVNVPVMTNADCD-S--V--YG-- 155s sp|P07338|CTRB1_RAT PGTVCATTGWGKTKY-NALKTPEKLQQAALPIVSEADCK-K--S--WGSK 155s sp|P00773|ELA1_RAT NNNPCYITGWGRTRT-NG-QLSQTLQQAYLPSVDYSICS---SSSYWGST 155s sp|Q91VE3|KLK7_MOUSE -GTSCTVSGWGTTTS-PDVTFPSDLMCSDVKLISSRECK-K--V---YKD 155s sp|Q6H321|KLK2_HORSE -GSTCYTSGWGLIST-FTNRGSGTLQCVELRLQSNEKCA-R--A---YPE 155s sp|P00757|KLKB4_MOUSE -GSTCLASGWG-STTPIKFKYPDDLQCVNLKLLPNEDCD-K--A---HEM 155s sp|Q03238|GRAM_RAT EGSRCSTAGWGITHQ-RG-QLAKSLQELDLRLLDTRMCN-NSRF---WNG 155s *** : * 155s 155s sp|Q06606|GRZ2_RAT YNDSI-QLCVGNPSEGK-A-TGKGDSGGPFV---CD-GVAQGIVSYR--L 155s sp|P08884|GRAE_MOUSE YTETT-EICAGDLKKIK-T-PFKGDSGGPLV---CD-NKAYGLLAYA--K 155s sp|P21844|MCPT5_MOUSE -S----QLCVGNPKKMQ-N-VYKGDSGGPLL---CA-GIAQGIASYV--H 155s sp|O35205|GRAK_MOUSE VITKD-MICAGD-ARGQKD-SCKGDSGGPLI---CK-GIFHALVSQG--Y 155s sp|Q9Y5K2|KLK4_HUMAN LYHPS-MFCAGGGQDQK-D-SCNGDSGGPLI---CN-GYLQGLVSFG--K 155s sp|Q7YRZ7|GRAA_BOVIN VIDLS-MICAGG-RKGEDD-SCEGDSGSPLI---CD-NVFRGVTSFG--- 155s sp|P29786|TRY3_AEDAE PVTEQ-MICAGYAAGGK-D-SCQGDSGGPLVS---G-DKLVGVVSWG--K 155s sp|P35037|TRY3_ANOGA GITDR-MLCAGYKRGGK-D-ACQGDSGGPLVV---D-GKLVGVVSWG--F 155s sp|P03953|CFAD_MOUSE VVTIN-MMCA-E-SNRR-D-TCRGDS 155s 155s OUTPUT RESULTS 155s #### File Type= GUIDE_TREE Format= newick Name= proteases_small.dnd 155s #### File Type= MSA Format= clustalw Name= proteases_small.clustalw 155s #### File Type= MSA Format= html Name= proteases_small.html 155s 155s # Command Line: t_coffee proteases_small.fasta -aln g0.aln g5.aln g10.aln g15.aln -output clustalw html [PROGRAM:T-COFFEE] 155s # T-COFFEE Memory Usage: Current= 390.841 Mb, Max= 406.172 Mb 155s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 155s # T-COFFEE is available from http://www.tcoffee.org 155s # Register on: https://groups.google.com/group/tcoffee/ 155s GSPLV---CG-DAVEGVVTWG--S 155s sp|P20160|CAP7_HUMAN -CT-G-VL--TR-RGG----ICNGDGGTPLV---CE-GLAHGVASFSL-G 155s sp|P80015|CAP7_PIG -CI-G-VF--SR-RGR----ISQGDRGTPLV---CN-GLAQGVASF-LRR 155s sp|P08246|ELNE_HUMAN -CT-L-VR--GR-QAG----VCFGDSGSPLV---CN-GLIHGIASF-VRG 155s sp|Q00871|CTRB1_PENVA -IVGDGVVCIDG-TGGK-S-TCNGDSGGPLN---LN-GMTYGITSFG--S 155s sp|P07338|CTRB1_RAT -IT-D-VMTCA-GASGV-S-SCMGDSGGPLVCQKDGVWTLAGIVSWG--S 155s sp|P00773|ELA1_RAT -V-KT-TMVCAG-GDGV-RSGCQGDSGGPLHCLVNGQYSVHGVTSFV--S 155s sp|Q91VE3|KLK7_MOUSE LLGKT-MLCAGIPDSKT-N-TCNGDSGGPLV---CN-DTLQGLVSWG--T 155s sp|Q6H321|KLK2_HORSE KMTEF-VLCATHRDDSG-S-ICLGDSGGALI---CD-GVFQGITSWG--Y 155s sp|P00757|KLKB4_MOUSE KVTDA-MLCAGEMDGGS-Y-TCEHDSGGPLI---CD-GILQGITSWG--P 155s sp|Q03238|GRAM_RAT VLTDS-MLCLKAGAKGQ-A-PCKGDSGGPLV---CGKGKVDGILSFS--S 155s * * .: .: : 155s 155s sp|Q06606|GRZ2_RAT -C-TGTL---PRVFTRISS-FIPWIQKT-MKVLQ-----------QS--- 155s sp|P08884|GRAE_MOUSE -N-RTIS---SGVFTKIVH-FLPWISRN-MKL--------------L--- 155s sp|P21844|MCPT5_MOUSE -R--N-AKP-PAVFTRISH-YRPWINKI-LRE--------------N--- 155s sp|O35205|GRAK_MOUSE -K-CGIAKK-PGIYTLLTKKYQTWIKSKLAPS-R-----------AH--- 155s sp|Q9Y5K2|KLK4_HUMAN AP-CGQVGV-PGVYTNLCK-FTEWIEKTVQA-S----------------- 155s sp|Q7YRZ7|GRAA_BOVIN K--CGNPQK-PGIYILLTKKHLNWIKKTIAGAI----------------- 155s sp|P29786|TRY3_AEDAE -G-CALPNL-PGVYARVST-VRQWIREV-SEV------------------ 155s sp|P35037|TRY3_ANOGA -G-CAMPGY-PGVYARVAV-VRDWVREN-SGA------------------ 155s sp|P03953|CFAD_MOUSE -RVCGNGKK-PGVYTRVSS-YRMWIE-NITNGNM-----------TS--- 155s sp|P20160|CAP7_HUMAN -P-CGR-G--PDFFTRVAL-FRDWIDGV-L----NNPGP-----GPA--- 155s sp|P80015|CAP7_PIG -R-FRR-S--SGFFTRVAL-FRNWIDSV-L----NNPP------------ 155s sp|P08246|ELNE_HUMAN -G-CASGLY-PDAFAPVAQ-FVNWIDSI-IQRSEDNPCPHPRDPDPASRT 155s sp|Q00871|CTRB1_PENVA SAGCEK-GY-PAAFTRVYY-YLDWIQQK--------T-----GVTP---- 155s sp|P07338|CTRB1_RAT -G-VCSTST-PAVYSRVTA-LMPWVQQI-LEA------------------ 155s sp|P00773|ELA1_RAT SM-GCNVSKKPTVFTRVSA-YISWMNNV-IAY--------------T--- 155s sp|Q91VE3|KLK7_MOUSE YP-CGQPND-PGVYTQVCK-YKRWVMETMKTHR----------------- 155s sp|Q6H321|KLK2_HORSE SE-CADFND-NFVFTKVMP-HLKWIKETIEKNS----------------- 155s sp|P00757|KLKB4_MOUSE EP-CGEPTE-PSVYTKLIK-FSSWIRETMANNP----------------- 155s sp|Q03238|GRAM_RAT KN-CTDIFK-PTVATAVAP-YSSWIRKV-IGRWS-----------PQPLT 155s : *: 155s 155s sp|Q06606|GRZ2_RAT - 155s sp|P08884|GRAE_MOUSE - 155s sp|P21844|MCPT5_MOUSE - 155s sp|O35205|GRAK_MOUSE - 155s sp|Q9Y5K2|KLK4_HUMAN - 155s sp|Q7YRZ7|GRAA_BOVIN - 155s sp|P29786|TRY3_AEDAE - 155s sp|P35037|TRY3_ANOGA - 155s sp|P03953|CFAD_MOUSE - 155s sp|P20160|CAP7_HUMAN - 155s sp|P80015|CAP7_PIG - 155s sp|P08246|ELNE_HUMAN H 155s sp|Q00871|CTRB1_PENVA - 155s sp|P07338|CTRB1_RAT N 155s sp|P00773|ELA1_RAT - 155s sp|Q91VE3|KLK7_MOUSE - 155s sp|Q6H321|KLK2_HORSE - 155s sp|P00757|KLKB4_MOUSE - 155s sp|Q03238|GRAM_RAT - 155s 155s 155s 155s 156s 156s PROGRAM: T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 156s -full_log S [0] 156s -genepred_score S [0] nsd 156s -run_name S [0] 156s -mem_mode S [0] mem 156s -extend D [1] 1 156s -extend_mode S [0] very_fast_triplet 156s -max_n_pair D [0] 10 156s -seq_name_for_quadruplet S [0] all 156s -compact S [0] default 156s -clean S [0] no 156s -do_self FL [0] 0 156s -do_normalise D [0] 1000 156s -template_file S [0] 156s -setenv S [0] 0 156s -export S [0] 0 156s -template_mode S [0] 156s -flip D [0] 0 156s -remove_template_file D [0] 0 156s -profile_template_file S [0] 156s -in S [0] 156s -seq S [0] 156s -aln S [0] 156s -method_limits S [0] 156s -method S [0] 156s -lib S [1] sample_aln1.tc_lib 156s -profile S [0] 156s -profile1 S [0] 156s -profile2 S [0] 156s -pdb S [0] 156s -relax_lib D [0] 1 156s -filter_lib D [0] 0 156s -shrink_lib D [0] 0 156s -out_lib W_F [0] no 156s -out_lib_mode S [0] primary 156s -lib_only D [0] 0 156s -outseqweight W_F [0] no 156s -seq_source S [0] ANY 156s -cosmetic_penalty D [0] 0 156s -gapopen D [0] 0 156s -gapext D [0] 0 156s -fgapopen D [0] 0 156s -fgapext D [0] 0 156s -nomatch D [0] 0 156s -newtree W_F [0] default 156s -tree W_F [0] NO 156s -usetree R_F [0] 156s -tree_mode S [0] nj 156s -distance_matrix_mode S [0] ktup 156s -distance_matrix_sim_mode S [0] idmat_sim1 156s -quicktree FL [0] 0 156s -outfile W_F [0] default 156s -maximise FL [1] 1 156s -output S [1] score_ascii html 156s -len D [0] 0 156s -infile R_F [1] sample_aln1.aln 156s -matrix S [0] default 156s -tg_mode D [0] 1 156s -profile_mode S [0] cw_profile_profile 156s -profile_comparison S [0] profile 156s -dp_mode S [0] linked_pair_wise 156s -ktuple D [0] 1 156s -ndiag D [0] 0 156s -diag_threshold D [0] 0 156s -diag_mode D [0] 0 156s -sim_matrix S [0] vasiliky 156s -transform S [0] 156s -extend_seq FL [0] 0 156s -outorder S [0] input 156s -inorder S [0] aligned 156s -seqnos S [0] off 156s -case S [0] keep 156s -cpu D [0] 0 156s -ulimit D [0] -1 156s -maxnseq D [0] -1 156s -maxlen D [0] -1 156s -sample_dp D [0] 0 156s -weight S [0] default 156s -seq_weight S [0] no 156s -align FL [1] 1 156s -mocca FL [0] 0 156s -domain FL [0] 0 156s -start D [0] 0 156s -len D [0] 0 156s -scale D [0] 0 156s -mocca_interactive FL [0] 0 156s -method_evaluate_mode S [0] default 156s -color_mode S [0] new 156s -aln_line_length D [0] 0 156s -evaluate_mode S [0] triplet 156s -get_type FL [0] 0 156s -clean_aln D [0] 0 156s -clean_threshold D [1] 1 156s -clean_iteration D [1] 1 156s -clean_evaluate_mode S [0] t_coffee_fast 156s -extend_matrix FL [0] 0 156s -prot_min_sim D [40] 40 156s -prot_max_sim D [90] 90 156s -prot_trim D [20] 20 156s -prot_min_cov D [40] 40 156s -pdb_type S [0] d 156s -pdb_min_sim D [35] 35 156s -pdb_max_sim D [100] 100 156s -pdb_min_cov D [50] 50 156s -pdb_blast_server W_F [0] EBI 156s -blast W_F [0] 156s -blast_server W_F [0] EBI 156s -pdb_db W_F [0] pdb 156s -protein_db W_F [0] uniref50 156s -method_log W_F [0] no 156s -struc_to_use S [0] 156s -cache W_F [0] use 156s -print_cache FL [0] 0 156s -align_pdb_param_file W_F [0] no 156s -align_pdb_hasch_mode W_F [0] hasch_ca_trace_bubble 156s -external_aligner S [0] NO 156s -msa_mode S [0] tree 156s -et_mode S [0] et 156s -master S [0] no 156s -blast_nseq D [0] 0 156s -lalign_n_top D [0] 10 156s -iterate D [1] 0 156s -trim D [0] 0 156s -split D [0] 0 156s -trimfile S [0] default 156s -split D [0] 0 156s -split_nseq_thres D [0] 0 156s -split_score_thres D [0] 0 156s -check_pdb_status D [0] 0 156s -clean_seq_name D [0] 0 156s -seq_to_keep S [0] 156s -dpa_master_aln S [0] 156s -dpa_maxnseq D [0] 0 156s -dpa_min_score1 D [0] 156s -dpa_min_score2 D [0] 156s -dpa_keep_tmpfile FL [0] 0 156s -dpa_debug D [0] 0 156s -multi_core S [0] templates_jobs_relax_msa_evaluate 156s -n_core D [0] 1 156s -thread D [0] 1 156s -max_n_proc D [0] 0 156s -lib_list S [0] 156s -prune_lib_mode S [0] 5 156s -tip S [0] none 156s -rna_lib S [0] 156s -no_warning D [0] 0 156s -run_local_script D [0] 0 156s -proxy S [0] unset 156s -email S [0] 156s -clean_overaln D [0] 0 156s -overaln_param S [0] 156s -overaln_mode S [0] 156s -overaln_model S [0] 156s -overaln_threshold D [0] 0 156s -overaln_target D [0] 0 156s -overaln_P1 D [0] 0 156s -overaln_P2 D [0] 0 156s -overaln_P3 D [0] 0 156s -overaln_P4 D [0] 0 156s -exon_boundaries S [0] 156s -display D [0] 100 156s 156s INPUT FILES 156s Input File (S) sample_aln1.aln Format clustal_aln 156s Input File (L) sample_aln1.tc_lib 156s 156s Identify Master Sequences [no]: 156s 156s Master Sequences Identified 156s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 156s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 156s 156s Multi Core Mode: 1 processors: 156s 5 156s -tip S [0] none 156s -rna_lib S [0] 156s -no_warning D [0] 0 156s -run_local_script D [0] 0 156s -proxy S [0] unset 156s -email S [0] 156s -clean_overaln D [0] 0 156s -overaln_param S [0] 156s -overaln_mode S [0] 156s -overaln_model S [0] 156s -overaln_threshold D [0] 0 156s -overaln_target D [0] 0 156s -overaln_P1 D [0] 0 156s -overaln_P2 D [0] 0 156s -overaln_P3 D [0] 0 156s -overaln_P4 D [0] 0 156s -exon_boundaries S [0] 156s -display D [0] 100 156s 156s INPUT FILES 156s Input File (S) sample_aln1.aln Format clustal_aln 156s Input File (L) sample_aln1.tc_lib 156s 156s Identify Master Sequences [no]: 156s 156s Master Sequences Identified 156s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 156s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 156s 156s Multi Core Mode: 1 processors: 156s 156s --- Process Method/Library/Aln Ssample_aln1.aln 156s xxx Retrieved Ssample_aln1.aln 5 156s -tip S [0] none 156s -rna_lib S [0] 156s -no_warning D [0] 0 156s -run_local_script D [0] 0 156s -proxy S [0] unset 156s -email S [0] 156s -clean_overaln D [0] 0 156s -overaln_param S [0] 156s -overaln_mode S [0] 156s -overaln_model S [0] 156s -overaln_threshold D [0] 0 156s -overaln_target D [0] 0 156s -overaln_P1 D [0] 0 156s -overaln_P2 D [0] 0 156s -overaln_P3 D [0] 0 156s -overaln_P4 D [0] 0 156s -exon_boundaries S [0] 156s -display D [0] 100 156s 156s INPUT FILES 156s Input File (S) sample_aln1.aln Format clustal_aln 156s Input File (L) sample_aln1.tc_lib 156s 156s Identify Master Sequences [no]: 156s 156s Master Sequences Identified 156s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 156s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 156s 156s Multi Core Mode: 1 processors: 156s 156s --- Process Method/Library/Aln Ssample_aln1.aln 156s xxx Retrieved Ssample_aln1.aln 156s --- Process Method/Library/Aln Lsample_aln1.tc_lib 156s xxx Retrieved Lsample_aln1.tc_lib 156s 156s All Methods Retrieved 156s 156s MANUAL PENALTIES: gapopen=0 gapext=0 156s 156s Library Total Size: [2422] 156s 156s Library Relaxation: Multi_proc [1] 156s 156s ! [Relax Library][TOT= 10][ 0 %] ! [Relax Library][TOT= 10][ 20 %] ! [Relax Library][TOT= 10][ 30 %] ! [Relax Library][TOT= 10][ 40 %] ! [Relax Library][TOT= 10][ 50 %] ! [Relax Library][TOT= 10][ 60 %] ! [Relax Library][TOT= 10][ 70 %] ! [Relax Library][TOT= 10][ 80 %] ! [Relax Library][TOT= 10][ 90 %] ! [Relax Library][TOT= 10][100 %] 156s 156s ! [Final Evaluation][TOT= 217][ 0 %] ! [Final Evaluation][TOT= 217][ 1 %] ! [Final Evaluation][TOT= 217][ 2 %] ! [Final Evaluation][TOT= 217][ 3 %] ! [Final Evaluation][TOT= 217][ 4 %] ! [Final Evaluation][TOT= 217][ 5 %] ! [Final Evaluation][TOT= 217][ 6 %] ! [Final Evaluation][TOT= 217][ 7 %] ! [Final Evaluation][TOT= 217][ 8 %] ! [Final Evaluation][TOT= 217][ 9 %] ! [Final Evaluation][TOT= 217][ 10 %] ! [Final Evaluation][TOT= 217][ 11 %] ! [Final Evaluation][TOT= 217][ 12 %] ! [Final Evaluation][TOT= 217][ 13 %] ! [Final Evaluation][TOT= 217][ 14 %] ! [Final Evaluation][TOT= 217][ 15 %] ! [Final Evaluation][TOT= 217][ 16 %] ! 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[Final Evaluation][TOT= 217][ 69 %] ! [Final Evaluation][TOT= 217][ 70 %] ! [Final Evaluation][TOT= 217][ 71 %] ! [Final Evaluation][TOT= 217][ 72 %] ! [Final Evaluation][TOT= 217][ 73 %] ! [Final Evaluation][TOT= 217][ 74 %] ! [Final Evaluation][TOT= 217][ 75 %] ! [Final Evaluation][TOT= 217][ 76 %] ! [Final Evaluation][TOT= 217][ 77 %] ! [Final Evaluation][TOT= 217][ 78 %] ! [Final Evaluation][TOT= 217][ 79 %] ! [Final Evaluation][TOT= 217][ 80 %] ! [Final Evaluation][TOT= 217][ 81 %] ! [Final Evaluation][TOT= 217][ 82 %] ! [Final Evaluation][TOT= 217][ 83 %] ! [Final Evaluation][TOT= 217][ 84 %] ! [Final Evaluation][TOT= 217][ 85 %] ! [Final Evaluation][TOT= 217][ 86 %] ! [Final Evaluation][TOT= 217][ 87 %] ! [Final Evaluation][TOT= 217][ 88 %] ! [Final Evaluation][TOT= 217][ 89 %] ! [Final Evaluation][TOT= 217][ 90 %] ! [Final Evaluation][TOT= 217][ 91 %] ! [Final Evaluation][TOT= 217][ 92 %] ! [Final Evaluation][TOT= 217][ 93 %] ! [Final Evaluation][TOT= 217][ 94 %] ! [Final Evaluation][TOT= 217][ 95 %] ! [Final Evaluation][TOT= 217][ 96 %] ! [Final Evaluation][TOT= 217][ 97 %] ! [Final Evaluation][TOT= 217][ 98 %] ! [Final Evaluation][TOT= 217][ 99 %] ! [Final Evaluation][TOT= 217][100 %] 156s 156s 5 156s -tip S [0] none 156s -rna_lib S [0] 156s -no_warning D [0] 0 156s -run_local_script D [0] 0 156s -proxy S [0] unset 156s -email S [0] 156s -clean_overaln D [0] 0 156s -overaln_param S [0] 156s -overaln_mode S [0] 156s -overaln_model S [0] 156s -overaln_threshold D [0] 0 156s -overaln_target D [0] 0 156s -overaln_P1 D [0] 0 156s -overaln_P2 D [0] 0 156s -overaln_P3 D [0] 0 156s -overaln_P4 D [0] 0 156s -exon_boundaries S [0] 156s -display D [0] 100 156s 156s INPUT FILES 156s Input File (S) sample_aln1.aln Format clustal_aln 156s Input File (L) sample_aln1.tc_lib 156s 156s Identify Master Sequences [no]: 156s 156s Master Sequences Identified 156s INPUT SEQUENCES: 10 SEQUENCES [PROTEIN] 156s Input File sample_aln1.aln Seq 1cms Length 175 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 1cms_1 Length 148 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 2apr Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 3app Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4ape Length 178 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq 4pep Length 174 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgb_chite Length 74 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_trybr Length 67 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgl_wheat Length 79 type PROTEIN Struct Unchecked 156s Input File sample_aln1.aln Seq hmgt_mouse Length 71 type PROTEIN Struct Unchecked 156s 156s Multi Core Mode: 1 processors: 156s 156s --- Process Method/Library/Aln Ssample_aln1.aln 156s xxx Retrieved Ssample_aln1.aln 156s --- Process Method/Library/Aln Lsample_aln1.tc_lib 156s xxx Retrieved Lsample_aln1.tc_lib 156s 156s All Methods Retrieved 156s 156s MANUAL PENALTIES: gapopen=0 gapext=0 156s 156s Library Total Size: [2422] 156s 156s Library Relaxation: Multi_proc [1] 156s 156s Relaxation Summary: [2422]--->[992] 156s 156s 156s 156s UN-WEIGHTED MODE: EVERY SEQUENCE WEIGHTS 1 156s 156s 156s OUTPUT RESULTS 156s #### File Type= MSA Format= score_ascii Name= sample_aln1.score_ascii 156s #### File Type= MSA Format= html Name= sample_aln1.html 156s 156s # Command Line: t_coffee -infile sample_aln1.aln -lib sample_aln1.tc_lib -special_mode evaluate [PROGRAM:T-COFFEE] 156s # T-COFFEE Memory Usage: Current= 389.265 Mb, Max= 405.442 Mb 156s # Results Produced with T-COFFEE Version_13.41.0.28bdc39 (2019-11-30 10:21:53 - Revision 5d5a1c1 - Build 465) 156s # T-COFFEE is available from http://www.tcoffee.org 156s # Register on: https://groups.google.com/group/tcoffee/ 157s CLUSTAL W (1.83) multiple sequence alignment 157s 157s sp|Q06606|GRZ2_RAT -------------------------------------------mflflff 157s sp|P08884|GRAE_MOUSE -------------------------m--------ppvlilltlllplgag 157s sp|P21844|MCPT5_MOUSE ------------------------mh--------lltlhllllllgsstk 157s sp|O35205|GRAK_MOUSE --------------------mrfssw--------alvslvagvymssecf 157s sp|Q9Y5K2|KLK4_HUMAN ---------------matagnpwgwf--------lgylilgvagslvsgs 157s sp|Q7YRZ7|GRAA_BOVIN -----------------mnipfpfsf--------ppaiclllipgvfpvs 157s sp|Q00871|CTRB1_PENVA migklslllvcvavasgnpaagkpwh--------wkspkplvdprihvna 157s sp|P08246|ELNE_HUMAN ----------------mtlgrrlacl--------flacvlpalllggtal 157s sp|P03953|CFAD_MOUSE --------------------mhssvy--------fvalvilgaavcaaqp 157s sp|Q91VE3|KLK7_MOUSE --------------------mgvwll--------slitvllslaletagq 157s sp|Q6H321|KLK2_HORSE ---------------------mwflv--------lcldlslgetgalppi 157s sp|Q03238|GRAM_RAT -------------------------l--------llllalktlwavgnrf 157s sp|P20160|CAP7_HUMAN -------------------mtrltvl--------allagllassragssp 157s sp|P07338|CTRB1_RAT --------------------maflwlvscfalvgatfgcgvptiqpvltg 157s sp|P00757|KLKB4_MOUSE ----------------------------------mwflilflalslggid 157s sp|P80015|CAP7_PIG -------------------------------------------------- 157s sp|P29786|TRY3_AEDAE ------mnqflfvsfcalldsakvsa--------------------atls 157s sp|P35037|TRY3_ANOGA -----misnkiaillavlvvavacaqarvaqqhrsvqalprflprpkydv 157s sp|P00773|ELA1_RAT -------------------mlrflvf--------aslvlyghstqdfpet 157s 157s 157s sp|Q06606|GRZ2_RAT lvailpvnteggeiiwgteskphsrpymafik---fy----dsnsephhc 157s sp|P08884|GRAE_MOUSE aeeii-----ggh-----vvkphsrpymafvk---svdiegnr----ryc 157s sp|P21844|MCPT5_MOUSE ageii-----ggt-----eciphsrpymayleivtse----ny-l--sac 157s sp|O35205|GRAK_MOUSE hteii-----ggr-----evqphsrpfmasiq---yr----sk----hic 157s sp|Q9Y5K2|KLK4_HUMAN csqii-----nge-----dcsphsqpwqaalv---me----ne----lfc 157s sp|Q7YRZ7|GRAA_BOVIN cegii-----ggn-----evaphtrrymalik--gl------k-----lc 157s sp|Q00871|CTRB1_PENVA tpriv-----ggv-----eatphswphqaalf---id----dm----yfc 157s sp|P08246|ELNE_HUMAN aseiv-----ggr-----rarphawpfmvslq---lr----gg----hfc 157s sp|P03953|CFAD_MOUSE rgril-----ggq-----eaaaharpymasvq---vn----gt----hvc 157s sp|Q91VE3|KLK7_MOUSE gerii-----dgy-----kckegshpwqvall---kg----nq----lhc 157s sp|Q6H321|KLK2_HORSE qsrii-----ggw-----ecekhskpwqvavy---hq----gh----fqc 157s sp|Q03238|GRAM_RAT eaqii-----ggr-----eavphsrpymvslq---nt----ks----hmc 157s sp|P20160|CAP7_HUMAN lldiv-----ggr-----karprqfpflasiq---nq----gr----hfc 157s sp|P07338|CTRB1_RAT lsriv-----nge-----daipgswpwqvslq---dk---tgf----hfc 157s sp|P00757|KLKB4_MOUSE aappv-----qsq-----vdcensqpwhvavy---rf----nk----yqc 157s sp|P80015|CAP7_PIG ---iv-----ggr-----raqpqefpflasiq---kq----gr----pfc 157s sp|P29786|TRY3_AEDAE sgriv-----ggf-----qidiaevphqvslq--rsg-----r----hfc 157s sp|P35037|TRY3_ANOGA ghriv-----ggf-----eidvsetpyqvslq--yfn-----s----hrc 157s sp|P00773|ELA1_RAT narvv-----gga-----earrnswpsqislq---ylsggswy----htc 157s : . : * 157s 157s sp|Q06606|GRZ2_RAT ggflvakdivmtaahc----ng-------r----nik---vtlgahni-- 157s sp|P08884|GRAE_MOUSE ggflvqddfvltaahc----rn-------r----tmt---vtlgahni-- 157s sp|P21844|MCPT5_MOUSE sgflirrnfvltaahc----ag-------r----sit---vllgahnk-- 157s sp|O35205|GRAK_MOUSE ggvlihpqwvltaahc----y-swfprg-h----spt---vvlgahsl-- 157s sp|Q9Y5K2|KLK4_HUMAN sgvlvhpqwvlsaahc----fq-------n----syt---iglglhsl-e 157s sp|Q7YRZ7|GRAA_BOVIN agalikenwvltaahc----dlk------g----npq---vilgahst-- 157s sp|Q00871|CTRB1_PENVA ggslissewvltaahc----md-------g--agfv---evvlgahni-- 157s sp|P08246|ELNE_HUMAN gatliapnfvmsaahc----van------v----nvravrvvlgahnl-- 157s sp|P03953|CFAD_MOUSE ggtlldeqwvlsaahc----mdgvtddd------svq---vllgahsl-- 157s sp|Q91VE3|KLK7_MOUSE ggvlvdkywvltaahc----km-------g----qyq---vqlgsdki-- 157s sp|Q6H321|KLK2_HORSE ggvlvhpqwvltaahc----ms-------d----dyq---iwlgrhnl-- 157s sp|Q03238|GRAM_RAT ggvlvhqkwvltaahc----lse----plq----qlk---lvfglhslhd 157s sp|P20160|CAP7_HUMAN ggaliharfvmtaasc----fqs---qnpg----vs---tvvlgaydl-- 157s sp|P07338|CTRB1_RAT ggslisedwvvtaahc----gvk------ts----dv---vvagefdq-- 157s sp|P00757|KLKB4_MOUSE ggvlldrnwvltaahc----yn-------d----kyq---vwlgknnf-- 157s sp|P80015|CAP7_PIG agalvhprfvltaasc----frg---knsg----sa---svvlgaydl-- 157s sp|P29786|TRY3_AEDAE ggsiisprwvltrahc----tt-------ntdpaayt---iragstd--- 157s sp|P35037|TRY3_ANOGA ggsvlnskwiltaahctvnlqp-------ss----la---vrlgssr--- 157s sp|P00773|ELA1_RAT ggtlirrnwvmtaahc----vss------q----mtf--rvvvgdhnl-- 157s .. :: ::: * * : * 157s 157s sp|Q06606|GRZ2_RAT -kkqe-ntq-visvvkakphenydr-----------dsh-----fndiml 157s sp|P08884|GRAE_MOUSE -kake-etqqiipvakaiphpdyna-----------taf-----fsdiml 157s sp|P21844|MCPT5_MOUSE -tske-dtwqklevekqflhpkyde-----------nlv-----vhdiml 157s sp|O35205|GRAK_MOUSE -skne-pmkqtfeikkfipfsrlqs-----------gsa-----shdiml 157s sp|Q9Y5K2|KLK4_HUMAN ad-qe-pgsqmveaslsvrhpeyn-----------rpll-----andlml 157s sp|Q7YRZ7|GRAA_BOVIN -shke-kldqvfsikkaipypcfdp-----------qtf-----egdlql 157s sp|Q00871|CTRB1_PENVA -rqnea-sqvsitstdffthenwns-----------wll-----tndial 157s sp|P08246|ELNE_HUMAN -srre-ptrqvfavqrifen-gydp-----------vnl-----lndivi 157s sp|P03953|CFAD_MOUSE -sape-pykrwydvqsvvphpgsrp-----------dsl-----eddlil 157s sp|Q91VE3|KLK7_MOUSE -gdq---saqkikatksfrhpgys-----------tkth-----vndiml 157s sp|Q6H321|KLK2_HORSE -sede-dtaqfhqvsdsfldpqfdlsllkkkylrpyddi-----shdlml 157s sp|Q03238|GRAM_RAT pqdp----gltfyikqaikhpgynl------------ky-----endlal 157s sp|P20160|CAP7_HUMAN -rrrerqsrqtfsissmsen-gydp-----------qqn-----lndlml 157s sp|P07338|CTRB1_RAT -gsde-eniqvlkiaqvfknpkf----------------nmftvrnditl 157s sp|P00757|KLKB4_MOUSE -lede-psdqhrlvskaiphpdfnmsllnehtpqpeddy-----sndlml 157s sp|P80015|CAP7_PIG -rqqe-qsrqtfsirsisqn-gydp-----------rqn-----lndvll 157s sp|P29786|TRY3_AEDAE -rtng-gi--ivkvksviphpqyn---------gdtyny-------dfsl 157s sp|P35037|TRY3_ANOGA -hasg-gt--vvrvarvlehpnyd-----------dstid-----ydfsl 157s sp|P00773|ELA1_RAT -sqnd-gteqyvsvqkimvhptwns-----------nnv---aagydial 157s *. : 157s 157s sp|Q06606|GRZ2_RAT lklerkaqlngvvktia-lp--rsq-dw-vkpgqvctvagwgr-----la 157s sp|P08884|GRAE_MOUSE lkleskakrtkavrplk-lp--rpn-ar-vkpgdvcsvagwgsrsindt- 157s sp|P21844|MCPT5_MOUSE lklkekakltlgvgtlp-ls--an-fnf-ippgrmcravgwgr-----tn 157s sp|O35205|GRAK_MOUSE iklrtaaelnknvqllh-lg--s--kny-lrdgtkcqvtgwgt-----tk 157s sp|Q9Y5K2|KLK4_HUMAN ikldesvsesdtirsis-ia--s---qc-ptagnsclvsgwgl-----la 157s sp|Q7YRZ7|GRAA_BOVIN lqlegkatmtkavgilq-lp--rt-edd-vkphtkchvagwgs-----tk 157s sp|Q00871|CTRB1_PENVA irlpspvslnsniktvk-lp--s---sd-vsvgttvtptgwgr-----ps 157s sp|P08246|ELNE_HUMAN lqlngsatinanvqvaq-lp--aq-grr-lgngvqclamgwgl-----lg 157s sp|P03953|CFAD_MOUSE fklsqnaslgphvrplplqy-----edkevepgtlcdvagwgv-----vt 157s sp|Q91VE3|KLK7_MOUSE vrldepvkmsskveavq-lp--e---hc-eppgtsctvsgwgt-----tt 157s sp|Q6H321|KLK2_HORSE lrlaqparitdavkild-lp--t---qe-pklgstcytsgwgl-----is 157s sp|Q03238|GRAM_RAT lkldgrvkpsknvkpla-lp--rkprdk-paegsrcstagwgi-----th 157s sp|P20160|CAP7_HUMAN lqldreanltssvtilp-lp--lq-nat-veagtrcqvagwgs-----qr 157s sp|P07338|CTRB1_RAT lklatpaqfsetvsavc-lp--nvd-dd-fppgtvcattgwgk-----tk 157s sp|P00757|KLKB4_MOUSE lrlskpaditdvvkpit-lp--t---ee-pklgstclasgwgs-----tt 157s sp|P80015|CAP7_PIG lqldrearltpsvalvp-lp--pq-nat-veagtncqvagwgt-----qr 157s sp|P29786|TRY3_AEDAE leldesigfsrsieaia-lpdase---t-vadgamctvsgwgd-----t- 157s sp|P35037|TRY3_ANOGA meleseltfsdvvqpvs-lp--dqd-ea-vedgtmtivsgwgn-----tq 157s sp|P00773|ELA1_RAT lrlaqsvtlnnyvqlav-lp--qe-gti-lannnpcyitgwgr-----tr 157s ..* : *** 157s 157s sp|Q06606|GRZ2_RAT n-c-t--s-snt---lqevnlevqkgqkcqd----mse--dynd-siqlc 157s sp|P08884|GRAE_MOUSE ----------kasarlreaqlviqedeeckk----rfr--hy-tetteic 157s sp|P21844|MCPT5_MOUSE vne-p--a-sdt---lqevkmrlqepqackh-----ft--sfrh-nsqlc 157s sp|O35205|GRAK_MOUSE pdllt--a-sdt---lrevtvtiisrkrcns--qsyynhkpvit-kdmic 157s sp|Q9Y5K2|KLK4_HUMAN --ngr--m-ptv---lqcvnvsvvseevcsk----lyd--plyh-psmfc 157s sp|Q7YRZ7|GRAA_BOVIN kdacq--m-sna---lreanvtvidrkicnd--aqhynfnpvid-lsmic 157s sp|Q00871|CTRB1_PENVA dsasg--i-sdv---lrqvnvpvmtnadcds----vyg---ivg-dgvvc 157s sp|P08246|ELNE_HUMAN rnr-g--i-asv---lqelnvtvvt-slc--------------r-rsnvc 157s sp|P03953|CFAD_MOUSE hag-r--r-pdv---lhqlrvsimnrttcnl--rtyhd--gvvt-inmmc 157s sp|Q91VE3|KLK7_MOUSE spdvt--f-psd---lmcsdvklissreckk----vyk--dllg-ktmlc 157s sp|Q6H321|KLK2_HORSE tftnr--g-sgt---lqcvelrlqsnekcar----ayp--ekmt-efvlc 157s sp|Q03238|GRAM_RAT qrg-q--l-aks---lqeldlrlldtrmcnn--srfwn--gvlt-dsmlc 157s sp|P20160|CAP7_HUMAN sgg-r--l-srf---prfvnvtvtpedqc--------------r-pnnvc 157s sp|P07338|CTRB1_RAT y---nalktpek---lqqaalpivseadck----kswg--skit-dvmtc 157s sp|P00757|KLKB4_MOUSE pikfk--y-pdd---lqcvnlkllpnedcdk----ahe--mkvt-damlc 157s sp|P80015|CAP7_PIG lr--r--lfsrf---prvlnvtvt-snpc--------------l-prdmc 157s sp|P29786|TRY3_AEDAE knv-f---emnt--llravnvpsynqaecaaalvnvvp----vt-eqmic 157s sp|P35037|TRY3_ANOGA sa--a---esna--ilraanvptvnqkect----iaysssggit-drmlc 157s sp|P00773|ELA1_RAT tng-q--l-sqt---lqqaylpsvdysicss--ssywg--stvk-ttmvc 157s : * * 157s 157s sp|Q06606|GRZ2_RAT vg--npse--g--k--atgkgdsggpfvcd----g--vaqgivsyrl-c- 157s sp|P08884|GRAE_MOUSE ag--dlkk--i--k--tpfkgdsggplvcd----n--kaygllayak-n- 157s sp|P21844|MCPT5_MOUSE vg--npkk--m--q--nvykgdsggpllca----g--iaqgiasyvh-r- 157s sp|O35205|GRAK_MOUSE ag--d--a--r--gqkdsckgdsggplick----g--ifhalvsqgy-k- 157s sp|Q9Y5K2|KLK4_HUMAN ag--g--g--qdqk--dscngdsggplicn------gylqglvsfgk--a 157s sp|Q7YRZ7|GRAA_BOVIN ag--g--r--k--geddscegdsgsplicd------nvfrgvtsfg---- 157s sp|Q00871|CTRB1_PENVA id--g--t--g--g-kstcngdsggplnln------gmtygitsfgs-sa 157s sp|P08246|ELNE_HUMAN tl--v--rgrq--a--gvcfgdsgsplvcn------glihgiasfvr-g- 157s sp|P03953|CFAD_MOUSE ae--s--n--r--r--dtcrgdsgsplvcg----d--avegvvtwgs-r- 157s sp|Q91VE3|KLK7_MOUSE ag--i--p--dskt--ntcngdsggplvcn------dtlqglvswgt--y 157s sp|Q6H321|KLK2_HORSE athrd--d----sg--siclgdsggalicd------gvfqgitswgy--s 157s sp|Q03238|GRAM_RAT lk--agak--g--q--apckgdsggplvcg----k-gkvdgilsfss-k- 157s sp|P20160|CAP7_HUMAN tg--v--ltrr--g--gicngdggtplvce------glahgvasfsl-g- 157s sp|P07338|CTRB1_RAT ag--a--s--g--v--sscmgdsggplvcqkd--gvwtlagivswgs-g- 157s sp|P00757|KLKB4_MOUSE ag--e--m--dggs--ytcehdsggplicd------gilqgitswgp--e 157s sp|P80015|CAP7_PIG ig--v--fsrr--g--risqgdrgtplvcn------glaqgvasflr-r- 157s sp|P29786|TRY3_AEDAE ag--y--aa-g--g-kdscqgdsggplvsg------dklvgvvswgk-g- 157s sp|P35037|TRY3_ANOGA ag--y--krgg--k--dacqgdsggplvvd------gklvgvvswgf-g- 157s sp|P00773|ELA1_RAT ag--g--d-gv--r--sgcqgdsggplhclvngqy--svhgvtsfvssm- 157s * * .: .: : 157s 157s sp|Q06606|GRZ2_RAT tg-t----l-p-rvftriss-fipwiqktmk--vlqqs------------ 157s sp|P08884|GRAE_MOUSE ---rti-ss-g--vftkivh-flpwisrnmkl-l---------------- 157s sp|P21844|MCPT5_MOUSE na-k------ppavftrish-yrpwinkilren----------------- 157s sp|O35205|GRAK_MOUSE -c-g-i-akkp-giytlltkkyqtwiksklapsrah-------------- 157s sp|Q9Y5K2|KLK4_HUMAN pcgq-v-gv-p-gvytnlck-ftewiektvqa-s---------------- 157s sp|Q7YRZ7|GRAA_BOVIN kc-g-n-pqkp-giyilltkkhlnwikktiagai---------------- 157s sp|Q00871|CTRB1_PENVA gc-e-k-gy-p-aaftrvyy-yldwiqqktgvtp---------------- 157s sp|P08246|ELNE_HUMAN gcas-g-ly-p-dafapvaq-fvnwidsiiq-rsednpcphprdpdpasr 157s sp|P03953|CFAD_MOUSE vc-g-n-gkkp-gvytrvss-yrmwienitngnmts-------------- 157s sp|Q91VE3|KLK7_MOUSE pcgq-p-nd-p-gvytqvck-ykrwvmetmkthr---------------- 157s sp|Q6H321|KLK2_HORSE ec-a-d-fndn-fvftkvmp-hlkwiketiekns---------------- 157s sp|Q03238|GRAM_RAT nc-tdi-fk-p-tvatavap-ysswirkvigr-wspqplt---------- 157s sp|P20160|CAP7_HUMAN pc-g-r--g-p-dfftrval-frdwidgvlnnpgpgpa------------ 157s sp|P07338|CTRB1_RAT vc-s-t-st-p-avysrvta-lmpwvqqilean----------------- 157s sp|P00757|KLKB4_MOUSE pc-g-epte-p-svytklik-fsswiretmannp---------------- 157s sp|P80015|CAP7_PIG rf-r-r--s-s-gfftrval-frnwidsvlnnpp---------------- 157s sp|P29786|TRY3_AEDAE -c-a-l-pnlp-gvyarvst-vrqwirevsev------------------ 157s sp|P35037|TRY3_ANOGA ca-m-p-gy-p-gvyarvav-vrdwvrensga------------------ 157s sp|P00773|ELA1_RAT gc-nvs-kk-p-tvftrvsa-yiswmnnviayt----------------- 157s : *: 157s 157s sp|Q06606|GRZ2_RAT -- 157s sp|P08884|GRAE_MOUSE -- 157s sp|P21844|MCPT5_MOUSE -- 157s sp|O35205|GRAK_MOUSE -- 157s sp|Q9Y5K2|KLK4_HUMAN -- 157s sp|Q7YRZ7|GRAA_BOVIN -- 157s sp|Q00871|CTRB1_PENVA -- 157s sp|P08246|ELNE_HUMAN th 157s sp|P03953|CFAD_MOUSE -- 157s sp|Q91VE3|KLK7_MOUSE -- 157s sp|Q6H321|KLK2_HORSE -- 157s sp|Q03238|GRAM_RAT -- 157s sp|P20160|CAP7_HUMAN -- 157s sp|P07338|CTRB1_RAT -- 157s sp|P00757|KLKB4_MOUSE -- 157s sp|P80015|CAP7_PIG -- 157s sp|P29786|TRY3_AEDAE -- 157s sp|P35037|TRY3_ANOGA -- 157s sp|P00773|ELA1_RAT -- 157s 157s 157s 157s 157s CLUSTAL W (1.83) multiple sequence alignment 157s 157s hmgb_chite AD---KPKRPLSaY------M---------------LWLNSARESI---- 157s hmgt_mouse K-----PKRPRSAY------N---------------IYVSESFQEA---- 157s hmgl_wheat DP--NKPKRAPSAF------F---------------VFMGEFREEF---- 157s hmgl_trybr KKDSNAPKRAMTSF------M---------------FFSSDFRSKH---- 157s 1cms GE---VASVPLTNY------LDSQYFGKIYLGTPPQEFTVLFDTGSSDFW 157s 4pep -----IGDEPLENY------LDTEYFGTIGIGTPAQDFTVIFDTGSSNLW 157s 4ape STG-SATTTPIDS-------LDDAYITPVQIGTPAQTLNLDFDTGSSDLW 157s 3app AASGVATNTPTA--------NDEEYITPVTIGG--TTLNLNFDTGSADLW 157s 2apr AG---VGTVPMTDYG-----NDIEYYGQVTIGTPGKKFNLDFDTGSSDLW 157s 1cms_1 YTG-SLHWVPVTVQQYWQFTVDSVTISGVVVACEG-GCQAILDTGTSKLV 157s . 157s 157s hmgb_chite --------------KRENPDF-KVTEVAK-KGGELWR------------- 157s hmgt_mouse ------------------KDD-SAQGKLK-LVNEAWK------------- 157s hmgl_wheat --------------KQKNPKNKSVAAVGK-AAGERWK------------- 157s hmgl_trybr ------------------SDL-SIVEMSK-AAGAAWK------------- 157s 1cms VPSIYCKSNACKNHQRFDPRKSS---TFQ-NLGKPLSIHYGTGS-MQGIL 157s 4pep VPSVYCSSLACSDHNQFNPDDSS---TFE-ATSQELSITYGTGS-MTGIL 157s 4ape VFSSETTASEVDGQTIYTPSKST---TAKLLSGATWSISYGDGSSSSGDV 157s 3app VFSTELPASQQSGHSVYNPSA-----TGKELSGYTWSISYGDGSSASGNV 157s 2apr IASTLCTN-CGSGQTKYDPNQSS---TYQ-ADGRTWSISYGDGSSASGIL 157s 1cms_1 GPSS---------------------------------------------- 157s 157s 157s hmgb_chite -----------------GLK--DKSEWE---------------------- 157s hmgt_mouse -----------------NLSPEEKQAYI---------------------- 157s hmgl_wheat -----------------SLSESEKAPYV---------------------- 157s hmgl_trybr -----------------ELGPEERKVYE---------------------- 157s 1cms GYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFD--------GILGMAYP 157s 4pep GYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFD--------GILGLAYP 157s 4ape YTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTID--------GLLGLAFS 157s 3app FTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNND--------GLLGLAFS 157s 2apr AKDNVNLGGLLIKGQTIELAKREAASFAS-GPND--------GLLGLGFD 157s 1cms_1 --------DILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYP 157s 157s 157s hmgb_chite ------------------------AKA--AT------AKQNYIRALQEYE 157s hmgt_mouse ------------------------QLA--KD------DRIRYDNEMKSWE 157s hmgl_wheat ------------------------AKA--NK------LKGEYNKAIAAYN 157s hmgl_trybr ------------------------EMA--EK------DKERYKREM---- 157s 1cms SLASEY---SIPV--------F--DNMMNRH----LVAQDLFSVYM-DRN 157s 4pep SISASG---ATPV--------F--DNLWDQG----LVSQDLFSVYL-SSN 157s 4ape TLNTVSPTQQKTF--------F--DNA--KA----SLDSPVFTADL-GYH 157s 3app SINTVQPQSQTTF--------F--DTV--KS----SLAQPLFAVAL-KHQ 157s 2apr TITTVRG--VKTP--------M--DNLISQG----LISRPIFGVYL-GKA 157s 1cms_1 LTPSAY---TS-QDQGFCTSGFQSENHSQKWILGDVFIREYYSVFD-RAN 157s : 157s 157s hmgb_chite R--NG-----------G 157s hmgt_mouse E--QM--A--------E 157s hmgl_wheat K--GE--S--------A 157s hmgl_trybr ----------------- 157s 1cms G--QESMLTLGAIDPSY 157s 4pep DD-SGSVVLLGGIDSSY 157s 4ape ---APGTYNFGFIDTTA 157s 3app ---QPGVYDFGFIDSSK 157s 2apr KNGGGGEYIFGGYDSTK 157s 1cms_1 N--LVGLA--KAI---- 157s 157s 157s 157s 158s CLUSTAL W (1.83) multiple sequence alignment 158s 158s hmgb_chite ad---kpkrplsay------m---------------lwlnsaresi---- 158s hmgt_mouse k-----pkrprsay------n---------------iyvsesfqea---- 158s hmgl_wheat dp--nkpkrapsaf------f---------------vfmgefreef---- 158s hmgl_trybr kkdsnapkramtsf------m---------------ffssdfrskh---- 158s 1cms ge---vasvpltny------ldsqyfgkiylgtppqeftvlfdtgssdfw 158s 4pep -----igdepleny------ldteyfgtigigtpaqdftvifdtgssnlw 158s 4ape stg-satttpids-------lddayitpvqigtpaqtlnldfdtgssdlw 158s 3app aasgvatntpta--------ndeeyitpvtigg--ttlnlnfdtgsadlw 158s 2apr ag---vgtvpmtdyg-----ndieyygqvtigtpgkkfnldfdtgssdlw 158s 1cms_1 ytg-slhwvpvtvqqywqftvdsvtisgvvvaceg-gcqaildtgtsklv 158s . 158s 158s hmgb_chite --------------krenpdf-kvtevak-kggelwr------------- 158s hmgt_mouse ------------------kdd-saqgklk-lvneawk------------- 158s hmgl_wheat --------------kqknpknksvaavgk-aagerwk------------- 158s hmgl_trybr ------------------sdl-sivemsk-aagaawk------------- 158s 1cms vpsiycksnacknhqrfdprkss---tfq-nlgkplsihygtgs-mqgil 158s 4pep vpsvycsslacsdhnqfnpddss---tfe-atsqelsitygtgs-mtgil 158s 4ape vfssettasevdgqtiytpskst---takllsgatwsisygdgssssgdv 158s 3app vfstelpasqqsghsvynpsa-----tgkelsgytwsisygdgssasgnv 158s 2apr iastlctn-cgsgqtkydpnqss---tyq-adgrtwsisygdgssasgil 158s 1cms_1 gpss---------------------------------------------- 158s 158s 158s hmgb_chite -----------------glk--dksewe---------------------- 158s hmgt_mouse -----------------nlspeekqayi---------------------- 158s hmgl_wheat -----------------slsesekapyv---------------------- 158s hmgl_trybr -----------------elgpeerkvye---------------------- 158s 1cms gydtvtvsnivdiqqtvglstqepgdvftyaefd--------gilgmayp 158s 4pep gydtvqvggisdtnqifglsetepgsflyyapfd--------gilglayp 158s 4ape ytdtvsvggltvtgqavesakkvsssftedstid--------gllglafs 158s 3app ftdsvtvggvtahgqavqaaqqisaqfqqdtnnd--------gllglafs 158s 2apr akdnvnlggllikgqtielakreaasfas-gpnd--------gllglgfd 158s 1cms_1 --------dilniqqaigatqnqygefdidcdnlsymptvvfeingkmyp 158s 158s 158s hmgb_chite ------------------------aka--at------akqnyiralqeye 158s hmgt_mouse ------------------------qla--kd------drirydnemkswe 158s hmgl_wheat ------------------------aka--nk------lkgeynkaiaayn 158s hmgl_trybr ------------------------ema--ek------dkerykrem---- 158s 1cms slasey---sipv--------f--dnmmnrh----lvaqdlfsvym-drn 158s 4pep sisasg---atpv--------f--dnlwdqg----lvsqdlfsvyl-ssn 158s 4ape tlntvsptqqktf--------f--dna--ka----sldspvftadl-gyh 158s 3app sintvqpqsqttf--------f--dtv--ks----slaqplfaval-khq 158s 2apr tittvrg--vktp--------m--dnlisqg----lisrpifgvyl-gka 158s 1cms_1 ltpsay---ts-qdqgfctsgfqsenhsqkwilgdvfireyysvfd-ran 158s : 158s 158s hmgb_chite r--ng-----------g 158s hmgt_mouse e--qm--a--------e 158s hmgl_wheat k--ge--s--------a 158s hmgl_trybr ----------------- 158s 1cms g--qesmltlgaidpsy 158s 4pep dd-sgsvvllggidssy 158s 4ape ---apgtynfgfidtta 158s 3app ---qpgvydfgfidssk 158s 2apr knggggeyifggydstk 158s 1cms_1 n--lvgla--kai---- 158s 158s 158s 158s 158s >sp|P08311|CATG_HUMAN Cathepsin G precursor (EC 3.4.21.20) (CG) - Homo sapiens (Human). 158s MQPLLLLLAFLLPTGAEAGEIIGGRESRPHSRPYMAYLQIQSPAGQSRCG 158s GFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY 158s NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRV 158s SMRRGTDTLREVQLRVQRDRQCLRIFGSYDPRRQICVGDRRERKAAFKGD 158s SGGPLLCNNVAHGIVSYGKSSGVPPEVFTRVSSFLPWIRTTMRSFKLLDQ 158s METPL 158s >sp|P28293|CATG_MOUSE Cathepsin G precursor (EC 3.4.21.20) (Vimentin-specific protease) (VSP) - Mus musculus (Mouse). 158s MQPLLLLLTFILLQGDEAGKIIGGREARPHSYPYMAFLLIQSPEGLSACG 158s GFLVREDFVLTAAHCLGSSINVTLGAHNIQMRERTQQLITVLRAIRHPDY 158s NPQNIRNDIMLLQLRRRARRSGSVKPVALPQASKKLQPGDLCTVAGWGRV 158s SQSRGTNVLQEVQLRVQMDQMCANRFQFYNSQTQICVGNPRERKSAFRGD 158s SGGPLVCSNVAQGIVSYGSNNGNPPAVFTKIQSFMPWIKRTMRRFAPRYQ 158s RPANSLSQAQT 158s >sp|P80931|MCT1A_SHEEP Mast cell protease 1A precursor (EC 3.4.21.-) (SMCP-1A) - Ovis aries (Sheep). 158s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQIKISGKSYRCGG 158s FLVHEDFVLTAAHCLGSSISVTLGAHNIVDRERTQQVIQVRRAIPHPHYN 158s DKTLANDIMLLQLTRKAEMSDAVSPINLPRSLEKVKPGMMCSVAGWGQLG 158s VNMPSADKLQEVNLEVQSEEECIARFKNYIPITQICAGDSTKRKNSFSGD 158s SGGPLVCNGVAQGIVSYGKDDGTTPDVYTRISSFLSWIQRTMRRY 158s >sp|O46683|MCPT3_SHEEP Mast cell protease 3 precursor (EC 3.4.21.-) (SMCP-3) - Ovis aries (Sheep). 158s MVLFLLLVALLSPAGEAGKIIGGHEAKPHSRPYMAFLQFKISGKSYICGG 158s FLVREDFVLTAAHCLGSSINVTLGAHTITDQERTQQVIQVRRAIPHPDYN 158s DETCANDIMLLQLTRKAEMTDAVSLINLPRSLEKVKPGMMCSVAGWGQLG 158s VNMPSADKLQEVDLEVQREEKCIARFKDYIPVTQICAGDPSKRKDSFLGD 158s SGGPLVCDGVAQGIVSYGKDDGTTPNVYTRISSFLSWIQRTMRQYKNQGS 158s A 158s >sp|P80219|DDN1_BOVIN Duodenase-1 (EC 3.4.21.-) (Duodenase I) (Duodenum serine protease) - Bos taurus (Bovine). 158s IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSIN 158s VTLGAHNIMERERTQQVIPVRRPIPHPDYNDETLANDIMLLKLTRKADIT 158s DKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEE 158s KCIARFKNYIPFTQICAGDPSKRRNSFSGDSGGPLVCNGVAQGIVSYGKN 158s DGTTPDVYTRISSFLPWIKRVMYLFK 158s >sp|P20718|GRAH_HUMAN Granzyme H precursor (EC 3.4.21.-) (Cytotoxic T-lymphocyte proteinase) (Cathepsin G-like 2) (CTSGL2) (CCP-X) (Cytotoxic serine protease C) (CSP-C) - Homo sapiens (Human). 158s MQPFLLLLAFLLTPGAGTEEIIGGHEAKPHSRPYMAFVQFLQEKSRKRCG 158s GILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAY 158s NPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYV 158s SMSTLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTGFKG 158s DSGGPLVCKDVAQGILSYGNKKGTPPGVYIKVSHFLPWIKRTMKRL 158s >sp|P10144|GRAB_HUMAN Granzyme B precursor (EC 3.4.21.79) (T-cell serine protease 1-3E) (Cytotoxic T-lymphocyte proteinase 2) (Lymphocyte protease) (SECT) (Granzyme-2) (Cathepsin G-like 1) (CTSGL1) (CTLA-1) (Fragmentin-2) (Human lymphocyte protein) (HLP) 158s MQPILLLLAFLLLPRADAGEIIGGHEAKPHSRPYMAYLMIWDQKSLKRCG 158s GFLIQDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAY 158s NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQT 158s APLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFK 158s GDSGGPLVCNKVAQGIVSYGRNNGMPPRACTKVSSFVHWIKKTMKRY 158s >sp|P04187|GRAB_MOUSE Granzyme B(G,H) precursor (EC 3.4.21.79) (Cytotoxic cell protease 1) (CCP1) (CTLA-1) (Fragmentin-2) - Mus musculus (Mouse). 158s MKILLLLLTLSLASRTKAGEIIGGHEVKPHSRPYMALLSIKDQQPEAICG 158s GFLIREDFVLTAAHCEGSIINVTLGAHNIKEQEKTQQVIPMVKCIPHPDY 158s NPKTFSNDIMLLKLKSKAKRTRAVRPLNLPRRNVNVKPGDVCYVAGWGRM 158s APMGKYSNTLQEVELTVQKDRECESYFKNRYNKTNQICAGDPKTKRASFR 158s GDSGGPLVCKKVAAGIVSYGYKDGSPPRAFTKVSSFLSWIKKTMKSS 158s >sp|P18291|NKP1_RAT Natural killer cell protease 1 precursor (EC 3.4.21.-) (RNKP-1) (Fragmentin) (Granzyme B) - Rattus norvegicus (Rat). 158s MKLLLLLLSFSLAPKTEAGEIIGGHEAKPHSRPYMAYLQIMDEYSGSKKC 158s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKMQQIIPVVKIIPHPA 158s YNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGK 158s LGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASF 158s RGDSGGPLVCKKVAAGIVSYGQNDGSTPRAFTKVSTFLSWIKKTMKKS 158s >sp|Q06605|GRZ1_RAT Granzyme-like protein 1 precursor (EC 3.4.21.-) (GLP-1) (Granzyme-like protein I) (GLP I) - Rattus norvegicus (Rat). 158s MNLLLLLLTVSLAPTTEAAEIIGGHEADPHSRPYMAYLQYKNEDSRDTIC 158s GGFLIREDFVLTAAHCSGSKINVTLGAHNIKEQEKTQQVIPVVKIIPHPA 158s YNAKTISNDIMLLKLKSKAKRTRAVKTLSLPRSNFKVKPGDVCYVAGWGK 158s LGPMGKFPDKLQEVELTVQEDQECETYLKNAYDKANQICAGDPKIKCASF 158s QGDSGGPLVCKKVAAGIVSYGRKDGSTPRAFTKVSTFLSWIEETMKKS 158s >sp|P21812|MCPT4_MOUSE Mast cell protease 4 precursor (EC 3.4.21.-) (MMCP-4) (Serosal mast cell protease) (MSMCP) (Myonase) - Mus musculus (Mouse). 158s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGFTATC 158s GGFLITRQFVMTAAHCSGREITVTLGAHDVSKTESTQQKIKVEKQIVHPK 158s YNFYSNLHDIMLLKLQKKAKETPSVNVIPLPRPSDFIKPGKMCRAAGWGR 158s TGVTEPTSDTLREVKLRIMDKEACKNYWHYDYNLQVCVGSPRKKRSAYKG 158s DSGGPLLCAGVAHGIVSYGRGDAKPPAVFTRISSYVPWINRVIKGE 158s >sp|P23946|MCPT1_HUMAN Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Homo sapiens (Human). 158s MLLLPLPLLLFLLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKF 158s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHP 158s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 158s RTGVLKPGSDTLQEVKLRLMDPQACSHFRDFDHNLQLCVGNPRKTKSAFK 158s GDSGGPLLCAGVAQGIVSYGRSDAKPPAVFTRISHYRPWINQILQAN 158s >sp|P43430|MCPT8_MOUSE Mast cell protease 8 precursor (EC 3.4.21.-) (MMCP-8) - Mus musculus (Mouse). 158s MFLLLVLLVAALPVNAEGGEIIWGTESKPHSRPYMAYIRFNDSKSVYRCG 158s GFLVARDIVMTAAHCNGKVINVTLGIHNLKKKKNTQLIPVSEAIPHESFD 158s NETLVNDIMLLKLERKAQLNSAVDTIALPKSKDWVKPGQVCTVAGWGKLA 158s NCTLSDTLQEVNLEVQKGQKCRSMSQTYNDSIQLCVGNPSENKATGKGDS 158s GGPFVCNGVVQGIVSCRLCTGTLPRVFTRISSFMPWIRKTMKLLQQP 158s >sp|P52195|MCPT1_PAPHA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Papio hamadryas (Hamadryas baboon). 158s MLLLPLPLLLLFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 158s CGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEKEDTWQELEVIKQFRHP 158s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 158s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 158s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 158s >sp|P56435|MCPT1_MACFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Macaca fascicularis (Crab eating macaque) (Cynomolgus monkey). 158s MLLLPLPLLLFFLCSRAEAGEIIGGTECKPHSRPYMAYLEIVTSNGPSKS 158s CGGFLIRRNFVLTAVHCAGRSITVTLGAHNITEKEDTWQKLEVIKQFRHP 158s KYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWG 158s RTGVLKPGSDTLQEVKLRLMDPQACSHFRYFDHNLQLCVGNPRKTKSAFK 158s GDSGGPLLCAGVAQGIVSYGRLDAKPPAVFTRISHYRPWINKILQAN 158s >sp|Q06606|GRZ2_RAT Granzyme-like protein 2 precursor (EC 3.4.21.-) (GLP-2) (Granzyme-like protein II) (GLP II) (Mast cell protease X) (rMCP-X) (rMCP-10) - Rattus norvegicus (Rat). 158s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMAFIKFYDSNSEPHHC 158s GGFLVAKDIVMTAAHCNGRNIKVTLGAHNIKKQENTQVISVVKAKPHENY 158s DRDSHFNDIMLLKLERKAQLNGVVKTIALPRSQDWVKPGQVCTVAGWGRL 158s ANCTSSNTLQEVNLEVQKGQKCQDMSEDYNDSIQLCVGNPSEGKATGKGD 158s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKVLQQS 158s >sp|P13366|GRAG_MOUSE Granzyme G precursor (EC 3.4.21.-) (CTL serine protease 1) (MCSP-1) - Mus musculus (Mouse). 158s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMAFIKSVDIEGKKKYC 158s GGFLVQDDFVLTAAHCRNRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPA 158s FNRKHGTNDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGK 158s TSINATKASARLREAQLIIQEDEECKKLWYTYSKTTQICAGDPKKVQAPY 158s EGESGGPLVCDNLAYGVVSYGINRTITPGVFTKVVHFLPWISTNMKLL 158s >sp|P79204|MCPT2_SHEEP Mast cell protease 2 precursor (EC 3.4.21.-) (SMCP-2) - Ovis aries (Sheep). 158s MHRPPLPLVLLLLCCRAQAGEIIGGTESKPHSRPYMAYLEIVTSQEKQVA 158s CGGFLIRRDFVLTAAHCAGRSVTVTLGAHNIQKKEDTWQRLEVIKQFPYP 158s KYEPVGVHDIMLLKLKEKANLTLAVGTLPLPPHVTFIRPGRMCQVAGWGR 158s TGVKEPASSTLQEVKLRLMEPRACRHFRAFDHNLQLCVGNPQSTKSAFKG 158s DSGGPLLCAGVAQGIVSYGLSSAKPPAVFTRISPYRPWIDEVLKEN 158s >sp|P11034|MCPT1_MOUSE Mast cell protease 1 precursor (EC 3.4.21.-) (MMCP-1) - Mus musculus (Mouse). 158s MQALLFLMALLLPSGAGAEEIIGGVEARPHSRPYMAHLKIITDRGSEDRC 158s GGFLIAPQFVLTAAHCKGREITVTLGAHDVSKSESTQQRIKVEKQIIHKN 158s YNVSFNLYDIMLLKLEEKAELTPTVDVIPLPGPSDFIDPGKMCWTAGWGK 158s TGEKEPTSETLREVELRIMDKEACKMYKHYDYNFQVCVGSSTKLKTAYMG 158s DSGGPLLCAGVAHGIVSYGDSHGKPPAVFTRISAYVPWIKTVINGK 158s >sp|P21842|MCPT1_CANFA Chymase precursor (EC 3.4.21.39) (Mast cell protease I) - Canis familiaris (Dog). 158s MHCLPLTLLLLLLCSRAEAEEIIGGTESKPHSRPYMAHLEILTLRNHLAS 158s CGGFLIRRNFVLTAAHCAGRFIMVTLGAHNIQKKEDTWQKLEVIKQFPHP 158s KYDDLTLRHDIMLLKLKEKANLTLAVGTLPLSPQFNFVPPGRMCRVAGWG 158s KRQVNGSGSDTLQEVKLRLMDPQACRHYMAFDHNLQLCVGNPRKTKSAFK 158s GDSGGPLLCAGVAQGIVSYGQNDAKPPAVFTRISHYRPWINKVLKQNKA 158s >sp|P08882|GRAC_MOUSE Granzyme C precursor (EC 3.4.21.-) (Cytotoxic cell protease 2) (CCP2) (B10) - Mus musculus (Mouse). 158s MPPVLILLTLLLPLRAGAEEIIGGNEISPHSRPYMAYYEFLKVGGKKMFC 158s GGFLVRDKFVLTAAHCKGSSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 158s YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGK 158s VTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASF 158s EEDSGGPLVCKRAAAGIVSYGQTDGSAPQVFTRVLSFVSWIKKTMKHS 158s >sp|P97594|MCPT8_RAT Mast cell protease 8 precursor (EC 3.4.21.-) (Mast cell protease VIII) (rMCP-VIII) (rMCP-8) - Rattus norvegicus (Rat). 158s MFLFLFFLVAILPVNTEGGEIIWGTESKPHSRPYMASLMFYYGNSYRHYC 158s GGFLVAKDIVMTAAHCNGSNIKVTLGAHNIKKQEKTQVIAVVKAKPHENY 158s DRHSRFNDIMLLKLERKAQLNGAVKTIALPRSQDWVKPGQVCTVAGWGCL 158s ANCSLSNTLQEVNLEVQEGQKCEDMSRNYNDSIQLCVGNPSEGKATGKGD 158s SGGPFVCDGVAQGIVSYRLCTGTLPRVFTRISSFIPWIQKTMKLLQQS 158s >sp|P09650|MCPT1_RAT Mast cell protease 1 precursor (EC 3.4.21.39) (Mast cell protease I) (RMCP-I) (RMCP-1) (Chymase) (Chymotrysin-like protease) (CLIP protein) - Rattus norvegicus (Rat). 158s MQALLFLMALLLPSGAGAEEIIGGVESRPHSRPYMAHLEITTERGYKATC 158s GGFLVTRQFVMTAAHCKGRETTVTLGVHDVSKTESTQQKIKVEKQIVHPN 158s YNFYSNLHDIMLLKLQKKAKVTPAVDVIPLPQPSDFLKPGKMCRAAGWGQ 158s TGVTKPTSNTLREVKQRIMDKEACKNYFHYNYNFQVCVGSPRKIRSAYKG 158s DSGGPLVCAGVAHGIVSYGRGDAKPPAVFTRISPYVPWINKVIKGKDLTS 158s LSLHESESPS 158s >sp|P50340|MCPT1_MERUN Mast cell protease 1 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 158s MQALLFLLALLWPPEAGAEEIIGGVESKPHSRPYMAHLTITTKQGFTASC 158s GGFLINPQFVMTAAHCKGREITVTLGAHDVSKKESTQQKIKVAKQIAHPS 158s YSFYSNLHDIMLLKLQKKAKVTASVDVISLPSPSDFINPGKVCRAAGWGR 158s TGVTEPTSDKLREVKLRIMTKAACKNYEHYDYNFQVCVGSPSKIRSAYKG 158s DSGGPLVCAGVAHGIVSYGRIDAKPPAVFTRISPYVPWINLVIRGK 158s >sp|P08883|GRAF_MOUSE Granzyme F precursor (EC 3.4.21.-) (Cytotoxic cell protease 4) (CCP4) (CTL serine protease 3) (C134) (Cytotoxic serine protease 3) (MCSP3) - Mus musculus (Mouse). 158s MPPILILLTLLLPLRAGAEEIIGGHEVKPHSRPYMARVRFVKDNGKRHSC 158s GGFLVQDYFVLTAAHCTGSSMRVILGAHNIRAKEETQQIIPVAKAIPHPA 158s YDDKDNTSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGHVCSVAGWGR 158s TSINATQRSSCLREAQLIIQKDKECKKYFYKYFKTMQICAGDPKKIQSTY 158s SGDSGGPLVCNNKAYGVLTYGLNRTIGPGVFTKVVHYLPWISRNMKLL 158s >sp|P08884|GRAE_MOUSE Granzyme E precursor (EC 3.4.21.-) (Cytotoxic cell protease 3) (CCP3) (CTL serine protease 2) (D12) (Cytotoxic serine protease 2) (MCSP2) - Mus musculus (Mouse). 158s MPPVLILLTLLLPLGAGAEEIIGGHVVKPHSRPYMAFVKSVDIEGNRRYC 158s GGFLVQDDFVLTAAHCRNRTMTVTLGAHNIKAKEETQQIIPVAKAIPHPD 158s YNATAFFSDIMLLKLESKAKRTKAVRPLKLPRPNARVKPGDVCSVAGWGS 158s RSINDTKASARLREAQLVIQEDEECKKRFRHYTETTEICAGDLKKIKTPF 158s KGDSGGPLVCDNKAYGLLAYAKNRTISSGVFTKIVHFLPWISRNMKLL 158s >sp|P00770|MCPT2_RAT Mast cell protease 2 precursor (EC 3.4.21.-) (Mast cell protease II) (rMCP-II) (rMCP-2) (Group-specific protease) - Rattus norvegicus (Rat). 158s MQALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMAHLDIVTEKGLRVIC 158s GGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHES 158s YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGK 158s TGVRDPTSYTLREVELRIMDEKACVDYRYYEYKFQVCVGSPTTLRAAFMG 158s DSGGPLLCAGVAHGIVSYGHPDAKPPAIFTRVSTYVPWINAVINTSS 158s >sp|P11033|GRAD_MOUSE Granzyme D precursor (EC 3.4.21.-) - Mus musculus (Mouse). 158s MPPILILLTLLLPLRAGAEEIIGGHVVKPHSRPYMAFVMSVDIKGNRIYC 158s GGFLIQDDFVLTAAHCKNSSMTVTLGAHNITAKEETQQIIPVAKDIPHPD 158s YNATIFYSDIMLLKLESKAKRTKAVRPLKLPRSNARVKPGDVCSVAGWGS 158s RSINDTKASARLREVQLVIQEDEECKKRFRYYTETTEICAGDLKKIKTPF 158s KGDSGGPLVCHNQAYGLFAYAKNGTISSGIFTKVVHFLPWISWNMKLL 158s >sp|P97592|MCPT4_RAT Mast cell protease 4 precursor (EC 3.4.21.-) (Mast cell protease IV) (rMCP-IV) (rMCP-4) - Rattus norvegicus (Rat). 158s MKALLFLMALLLPSGAGAEEIIGGVESIPHSRPYMALLKIVTEEGHVTFC 158s GGFLISLQFVLTAAHCHGREITVTLGAHDMSKRESTQQKIKVVKQIFPLK 158s YNLFSNFRDIMLLKLEQKAVLTPSVNVIPLPQSSDIIKPGTMCLAAGWGQ 158s TGVKEPNSNTLREVMLRIMEMKACKDYRHYDNRFQICVGIPQMLKLAYKG 158s DSGGPLVCAGVAHGIVSHGPGRGIPPIIFTRISSYVSWINRVIRGN 158s >sp|O35164|MCPT9_MOUSE Mast cell protease 9 precursor (EC 3.4.21.-) (MMCP-9) - Mus musculus (Mouse). 158s MQALLFLMALLLPSRAGAEEIIGGVESEPHSRPYMAYVNTFSKKGYVAIC 158s GGFLIAPQFVMTAAHCSGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 158s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 158s TGVKKSISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 158s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGE 158s >sp|Q00356|MCPTX_MOUSE Mast cell protease-like protein precursor (EC 3.4.21.-) - Mus musculus (Mouse). 158s MQALLFLMALLLPSGAGAEEIIGGVESEPHSRPYMAYVNTFRRKGYVAIC 158s GGFLITPQFVMTAAHCRGRRMTVTLGAHNVRKRECTQQKIKVEKYILPPN 158s YNVSSKFNDIVLLKLKKQANLTSAVDVVPLPGPSDFAKPGTMCWAAGWGR 158s TGVKKIISHTLREVELKIVGEKACKIFRHYKDSLQICVGSSTKVASVYMG 158s DSGGPLLCAGVAHGIVSSGRGNAKPPAIFTRISPHVPWINRVIKGK 158s >sp|P50339|MCPT3_RAT Mast cell protease 3 precursor (EC 3.4.21.-) (Mast cell protease III) (rMCP-III) (rMCP-3) (Chymase 1) - Rattus norvegicus (Rat). 158s MNLHALCLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSDNYLSA 158s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTYKEDTWQKLEVEKQFIHP 158s NYDKRLVLHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 158s RTNVNEPASDTLQEVKMRLQEPQSCKHFTSFQHKSQLCVGNPKKMQNVYK 158s GDSGGPLLCAGIAQGIASYVHPNAKPPAVFTRISHYRPWINKILREN 158s >sp|P21844|MCPT5_MOUSE Mast cell protease 5 precursor (EC 3.4.21.-) (MMCP-5) (Mast cell chymase 1) - Mus musculus (Mouse). 158s MHLLTLHLLLLLLGSSTKAGEIIGGTECIPHSRPYMAYLEIVTSENYLSA 158s CSGFLIRRNFVLTAAHCAGRSITVLLGAHNKTSKEDTWQKLEVEKQFLHP 158s KYDENLVVHDIMLLKLKEKAKLTLGVGTLPLSANFNFIPPGRMCRAVGWG 158s RTNVNEPASDTLQEVKMRLQEPQACKHFTSFRHNSQLCVGNPKKMQNVYK 158s GDSGGPLLCAGIAQGIASYVHRNAKPPAVFTRISHYRPWINKILREN 158s >sp|P50341|MCPT2_MERUN Mast cell protease 2 precursor (EC 3.4.21.-) - Meriones unguiculatus (Mongolian jird) (Mongolian gerbil). 158s MHLLALHLLLFLLGSRAKAGEIIGGTECKPHSRPYMAYLEIATSKNYLST 158s CSGFLIRRNFVLTAAHCSGRSITVLLGAHNKTAKEDTWQKIEVEKQFPHP 158s KYDDYSVLHDIMLLKLKEKAKLTLAVGTLPLPAKFSFIPPGRVCRAVGWG 158s KTNVNEPTSDTLQEVKMRLLEAEGCKHFTNFYHSSQLCVGNPKKMQNVYK 158s GDSGGPLLCAGIAQGIASYVRRNARPPAVFTRISHYRPWINKILREN 158s >sp|P15119|MCPT2_MOUSE Mast cell protease 2 precursor (EC 3.4.21.-) (MMCP-2) - Mus musculus (Mouse). 158s MQALLFLMALLLPSGAGAEEIIGGVEAKPHSRPYMAYLKFTTKNGSKERC 158s GGFLIAPQFVMTAAHCNGSEISVILGAHNINKNEPTQQIIKTEKTFVHPK 158s FQYLSGFYDIMLLKLQKKAELNSDVDVISLPSSSDFIKPGKMCWTAGWGK 158s TGKNNPLSVTLREVELRIMDQEACKDHSDYDYQLQVCAGSPTTSKSIGQG 158s DSGGPLVCDSVAHGIASSYEAKAPAVFTRISYYLPWIYKVLKSK 158s >sp|P35033|TRY3_SALSA Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Fragment) - Salmo salar (Atlantic salmon). 158s FAVAFAAPIDDEDDKIVGGYECRKNSASYQASLQSGYHFCGGSLISSTWV 158s VSAAHCYKSRIQVRLGEHNIAVNEGTEQFIDSVKVIMHPSYNSRNLDNDI 158s MLIKLSKPASLNSYVSTVALPSSCASSGTRCLVSGWGNLSGSSSNYPDTL 158s RCLDLPILSSSSCNSAYPGQITSNMFCAGFMEGGKDSCQGDSGGPVVCNG 158s QLQGVVSWGYGCAQRNKPGVYTKVCNYRSWISSTMSSN 158s >sp|P70059|TRY2_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 158s MKFLVILVLLGAAVAFEDDDKIVGGFTCAKNAVPYQVSLNAGYHFCGGSL 158s INSQWVVSAAHCYKSRIQVRLGEHNIALNEGTEQFIDSQKVIKHPNYNSR 158s NLDNDIMLIKLSTTARLSANIQSVPLPSACASAGTNCLISGWGNTLSSGT 158s NYPDLLQCLNAPILTDSQCSNSYPGEITKNMFCAGFLAGGKDSCQGDSGG 158s PVVCNGQLQGVVSWGYGCAQRNYPGVYTKVCNFVTWIQSTISSN 158s >sp|P35032|TRY2_SALSA Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Fragment) - Salmo salar (Atlantic salmon). 158s AAFATEDDKIVGGYECKAYSQPHQVSLNSGYHFCGGSLVNENWVVSAAHC 158s YQSRVEVRLGEHNIQVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLS 158s KPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTADKNKLQCLNIPI 158s LSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGELQGVVS 158s WGYGCAEPGNPGVYAKVCIFNDWLTSTMATY 158s >sp|P00762|TRY1_RAT Anionic trypsin-1 precursor (EC 3.4.21.4) (Anionic trypsin I) (Pretrypsinogen I) - Rattus norvegicus (Rat). 158s MSALLILALVGAAVAFPLEDDDKIVGGYTCPEHSVPYQVSLNSGYHFCGG 158s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGDEQFINAAKIIKHPNYS 158s SWTLNNDIMLIKLSSPVKLNARVAPVALPSACAPAGTQCLISGWGNTLSN 158s GVNNPDLLQCVDAPVLSQADCEAAYPGEITSSMICVGFLEGGKDSCQGDS 158s GGPVVCNGQLQGIVSWGYGCALPDNPGVYTKVCNFVGWIQDTIAAN 158s >sp|P35031|TRY1_SALSA Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Salmo salar (Atlantic salmon). 158s MISLVFVLLIGAAFATEDDKIVGGYECKAYSQTHQVSLNSGYHFCGGSLV 158s NENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYN 158s IDNDIMLIKLSKPATLNTYVQPVALPTSCAPAGTMCTVSGWGNTMSSTAD 158s SNKLQCLNIPILSYSDCNNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPV 158s VCNGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMASY 158s >sp|P06872|TRY2_CANFA Anionic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 158s MNPLLILAFLGAAVATPTDDDDKIVGGYTCEENSVPYQVSLNAGYHFCGG 158s SLISDQWVVSAAHCYKSRIQVRLGEYNIDVLEGNEQFINSAKVIRHPNYN 158s SWILDNDIMLIKLSSPAVLNARVATISLPRACAAPGTQCLISGWGNTLSS 158s GTNYPELLQCLDAPILTQAQCEASYPGQITENMICAGFLEGGKDSCQGDS 158s GGPVVCNGELQGIVSWGYGCAQKNKPGVYTKVCNFVDWIQSTIAANS 158s >sp|P24158|PRTN3_HUMAN Myeloblastin precursor (EC 3.4.21.76) (Leukocyte proteinase 3) (PR-3) (PR3) (AGP7) (Wegener's autoantigen) (P29) (C-ANCA antigen) (Neutrophil proteinase 4) (NP-4) - Homo sapiens (Human). 158s MAHRPPSPALASVLLALLLSGAARAAEIVGGHEAQPHSRPYMASLQMRGN 158s PGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHF 158s SVAQVFLNNYDAENKLNDVLLIQLSSPANLSASVATVQLPQQDQPVPHGT 158s QCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICF 158s GDSGGPLICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLRRV 158s EAKGRP 158s >sp|P07477|TRY1_HUMAN Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) (Cationic trypsinogen) - Homo sapiens (Human). 158s MNPLLILTFVAAALAAPFDDDDKIVGGYNCEENSVPYQVSLNSGYHFCGG 158s SLINEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPQYD 158s RKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLISGWGNTASS 158s GADYPDELQCLDAPVLSQAKCEASYPGKITSNMFCVGFLEGGKDSCQGDS 158s GGPVVCNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 158s >sp|P16049|TRY1_GADMO Trypsin-1 precursor (EC 3.4.21.4) (Trypsin I) - Gadus morhua (Atlantic cod). 158s MKSLIFVLLLGAVFAEEDKIVGGYECTKHSQAHQVSLNSGYHFCGGSLVS 158s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQYISSSSVIRHPNYSSYNI 158s NNDIMLIKLTKPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVADG 158s DKLQCLSLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 158s CNGVLQGVVSWGYGCAERDHPGVYAKVCVLSGWVRDTMANY 158s >sp|Q9UKR3|KLK13_HUMAN Kallikrein-13 precursor (EC 3.4.21.-) (Kallikrein-like protein 4) (KLK-L4) - Homo sapiens (Human). 158s MWPLALVIASLTLALSGGVSQESSKVLNTNGTSGFLPGGYTCFPHSQPWQ 158s AALLVQGRLLCGGVLVHPKWVLTAAHCLKEGLKVYLGKHALGRVEAGEQV 158s REVVHSIPHPEYRRSPTHLNHDHDIMLLELQSPVQLTGYIQTLPLSHNNR 158s LTPGTTCRVSGWGTTTSPQVNYPKTLQCANIQLRSDEECRQVYPGKITDN 158s MLCAGTKEGGKDSCEGDSGGPLVCNRTLYGIVSWGDFPCGQPDRPGVYTR 158s VSRYVLWIRETIRKYETQQQKWLKGPQ 158s >sp|Q91041|TRYX_GADMO Trypsin-10 precursor (EC 3.4.21.4) (Trypsin X) - Gadus morhua (Atlantic cod). 158s MKSLIFVLLLGAVFAEEDKIVGGYECTRHSQAHQVSLNSGYHFCGGSLVS 158s KDWVVSAAHCYKSVLRVRLGEHHIRVNEGTEQFISSSSVIRHPNYSSYNI 158s DNDIMLIKLTEPATLNQYVHAVALPTECAADATMCTVSGWGNTMSSVDDG 158s DKLQCLNLPILSHADCANSYPGMITQSMFCAGYLEGGKDSCQGDSGGPVV 158s CNGVLQGVVSWGYGCAERDNPGVYAKVCVLSGWVRDTMASY 158s >sp|Q90627|TRY1_CHICK Trypsin I-P1 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 158s MKFLVLVAFVGVTVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 158s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 158s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 158s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 158s DSGGPVVCNGQLQGIVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 158s >sp|P51779|CFAD_PIG Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Sus scrofa (Pig). 158s MADRSGHLAALILLGAAVCVAQPRGRILGGQEAKSHERPYMASVQVNGKH 158s VCGGFLVSEQWVLSAAHCLEDVAEGKLQVLLGAHSLSQPEPSKRLYDVLR 158s AVPHPDSQPDTIDHDLLLLKLSEKAELGPAVQPLAWQREDHEVPAGTLCD 158s VAGWGVVSHTGRRPDRLQHLLLPVLDRTTCNLRTYHDGTITERMMCAESN 158s RRDSCKGDSGGPLVCGGVAEGVVTSGSRVCGNRKKPGIYTRLASYVAWID 158s GVMADSAAA 158s >sp|P00746|CFAD_HUMAN Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) - Homo sapiens (Human). 158s MHSSVYFAVLVLLGAAACAARPRGRILGGREAEAHARPYMASVQLNGAHL 158s CGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRA 158s VPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDV 158s AGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR 158s RDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 158s VLA 158s >sp|Q9H2R5|KLK15_HUMAN Kallikrein-15 precursor (EC 3.4.21.-) (ACO protease) - Homo sapiens (Human). 158s MWLLLTLSFLLASTAAQDGDKLLEGDECAPHSQPWQVALYERGRFNCGAS 158s LISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTTSRVIPHPRYEA 158s RSHRNDIMLLRLVQPARLNPQVRPAVLPTRCPHPGEACVVSGWGLVSHNE 158s PGTAGSPRSQVSLPDTLHCANISIISDTSCDKSYPGRLTNTMVCAGAEGR 158s GAESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCHYLEWIR 158s ETMKRN 158s >sp|P00761|TRYP_PIG Trypsin precursor (EC 3.4.21.4) - Sus scrofa (Pig). 158s FPTDDDDKIVGGYTCAANSIPYQVSLNSGSHFCGGSLINSQWVVSAAHCY 158s KSRIQVRLGEHNIDVLEGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSS 158s PATLNSRVATVSLPRSCAAAGTECLISGWGNTKSSGSSYPSLLQCLKAPV 158s LSDSSCKSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQLQGIVS 158s WGYGCAQKNKPGVYTKVCNYVNWIQQTIAAN 158s >sp|P08426|TRY3_RAT Cationic trypsin-3 precursor (EC 3.4.21.4) (Cationic trypsin III) (Pretrypsinogen III) - Rattus norvegicus (Rat). 158s MKALIFLAFLGAAVALPLDDDDDKIVGGYTCQKNSLPYQVSLNAGYHFCG 158s GSLINSQWVVSAAHCYKSRIQVRLGEHNIDVVEGGEQFIDAAKIIRHPSY 158s NANTFDNDIMLIKLNSPATLNSRVSTVSLPRSCGSSGTKCLVSGWGNTLS 158s SGTNYPSLLQCLDAPVLSDSSCKSSYPGKITSNMFCLGFLEGGKDSCQGD 158s SGGPVVCNGQLQGVVSWGYGCAQKGKPGVYTKVCNYVNWIQQTVAAN 158s >sp|P12544|GRAA_HUMAN Granzyme A precursor (EC 3.4.21.78) (Cytotoxic T-lymphocyte proteinase 1) (Hanukkah factor) (H factor) (HF) (Granzyme-1) (CTL tryptase) (Fragmentin-1) - Homo sapiens (Human). 158s MRNSYRFLASSLSVVVSLLLIPEDVCEKIIGGNEVTPHSRPYMVLLSLDR 158s KTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKE 158s FPYPCYDPATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQV 158s AGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNPVIGMNMVCAGS 158s LRGGRDSCNGDSGSPLLCEGVFRGVTSFGLENKCGDPRGPGVYILLSKKH 158s LNWIIMTIKGAV 158s >sp|Q90628|TRY2_CHICK Trypsin I-P38 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 158s MKFLVLVAFLGVAVAFPISDEDDDKIVGGYSCARSAAPYQVSLNSGYHFC 158s GGSLISSQWVLSAAHCYKSSIQVKLGEYNLAAQDGSEQTISSSKVIRHSG 158s YNANTLNNDIMLIKLSKAATLNSYVNTVPLPTSCVTAGTTCLISGWGNTL 158s SSGSLYPDVLQCLNAPVLSSSQCSSAYPGRITSNMICIGYLNGGKDSCQG 158s DSGGPVVCNGQLQGFVSWGIGCAQKGYPGVYTKVCNYVSWIKTTMSSN 158s >sp|Q9P0G3|KLK14_HUMAN Kallikrein-14 precursor (EC 3.4.21.-) (Kallikrein-like protein 6) (KLK-L6) - Homo sapiens (Human). 158s MFLLLTALQVLAIAMTQSQEDENKIIGGHTCTRSSQPWQAALLAGPRRRF 158s LCGGALLSGQWVITAAHCGRPILQVALGKHNLRRWEATQQVLRVVRQVTH 158s PNYNSRTHDNDLMLLQLQQPARIGRAVRPIEVTQACASPGTSCRVSGWGT 158s ISSPIARYPASLQCVNINISPDEVCQKAYPRTITPGMVCAGVPQGGKDSC 158s QGDSGGPLVCRGQLQGLVSWGMERCALPGYPGVYTNLCKYRSWIEETMRD 158s K 158s >sp|P00763|TRY2_RAT Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Rattus norvegicus (Rat). 158s MRALLFLALVGAAVAFPVDDDDKIVGGYTCQENSVPYQVSLNSGYHFCGG 158s SLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFD 158s RKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGWGNTLSS 158s GVNEPDLLQCLDAPLLPQADCEASYPGKITDNMVCVGFLEGGKDSCQGDS 158s GGPVVCNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAAN 158s >sp|P07146|TRY2_MOUSE Anionic trypsin-2 precursor (EC 3.4.21.4) (Anionic trypsin II) (Pretrypsinogen II) - Mus musculus (Mouse). 158s MSALLILALVGAAVAFPVDDDDKIVGGYTCRESSVPYQVSLNAGYHFCGG 158s SLINDQWVVSAAHCYKYRIQVRLGEHNINVLEGNEQFVDSAKIIRHPNYN 158s SWTLDNDIMLIKLASPVTLNARVASVPLPSSCAPAGTQCLISGWGNTLSN 158s GVNNPDLLQCVDAPVLPQADCEASYPGDITNNMICVGFLEGGKDSCQGDS 158s GGPVVCNGELQGIVSWGYGCAQPDAPGVYTKVCNYVDWIQNTIADN 158s >sp|P35030|TRY3_HUMAN Trypsin-3 precursor (EC 3.4.21.4) (Trypsin III) (Brain trypsinogen) (Mesotrypsinogen) (Trypsin IV) - Homo sapiens (Human). 158s MCGPDDRCPARWPGPGRAVKCGKGLAAARPGRVERGGAQRGGAGLELHPL 158s LGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPYQVSLNS 158s GSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKI 158s IRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISG 158s WGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGK 158s DSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTI 158s AANS 158s >sp|Q7JIG6|KLK15_SAGOE Kallikrein-15 precursor (EC 3.4.21.-) - Saguinus oedipus (Cotton-top tamarin). 158s MWLLLPLSFLLTSTAQDGGKLLEGEECAPHSQPWQVALYERGRFNCGASL 158s ISPHWVLSAAHCQSRFMRVRLGEHNLRKRDGPEQLRTASRVIPHPRYEAR 158s SHRHDIMLLRLVQPARLTPQVRPVVLPTRCPHPGEACVVSGWGLVSHNEP 158s GTTGRPQSQVSLPDTLHCANISIISDASCDKNYPGRLTNTMVCAGAEGRG 158s AESCEGDSGGPLVCGGILQGIVSWGDVPCDNTTKPGVYTKVCRYVKWIRE 158s TMKRN 158s >sp_vs|P35030-2|P35030 Isoform B of P35030 158s MELHPLLGGRTWRAARDADGCEALGTVAVPFDDDDKIVGGYTCEENSLPY 158s QVSLNSGSHFCGGSLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQF 158s INAAKIIRHPKYNRDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGT 158s ECLISGWGNTLSFGADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVG 158s FLEGGKDSCQRDSGGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVD 158s WIKDTIAANS 158s >sp_vs|P35030-3|P35030 Isoform C of P35030 158s MNPFLILAFVGAAVAVPFDDDDKIVGGYTCEENSLPYQVSLNSGSHFCGG 158s SLISEQWVVSAAHCYKTRIQVRLGEHNIKVLEGNEQFINAAKIIRHPKYN 158s RDTLDNDIMLIKLSSPAVINARVSTISLPTAPPAAGTECLISGWGNTLSF 158s GADYPDELKCLDAPVLTQAECKASYPGKITNSMFCVGFLEGGKDSCQRDS 158s GGPVVCNGQLQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKDTIAANS 158s >sp|P11032|GRAA_MOUSE Granzyme A precursor (EC 3.4.21.78) (T cell-specific serine protease 1) (TSP-1) (CTLA-3) (Fragmentin-1) (Autocrine thymic lymphoma granzyme-like serine protease) - Mus musculus (Mouse). 158s MRNASGPRGPSLATLLFLLLIPEGGCERIIGGDTVVPHSRPYMALLKLSS 158s NTICAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAF 158s PYPCYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVA 158s GWGRFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDL 158s RGGKDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLN 158s WIKKIMKGSV 158s >sp_vs|P11032-2|P11032 Isoform HF2 of P11032 158s MSKEMNEILLSWEINLSSKRGGCERIIGGDTVVPHSRPYMALLKLSSNTI 158s CAGALIEKNWVLTAAHCNVGKRSKFILGAHSINKEPEQQILTVKKAFPYP 158s CYDEYTREGDLQLVRLKKKATVNRNVAILHLPKKGDDVKPGTRCRVAGWG 158s RFGNKSAPSETLREVNITVIDRKICNDEKHYNFHPVIGLNMICAGDLRGG 158s KDSCNGDSGSPLLCDGILRGITSFGGEKCGDRRWPGVYTFLSDKHLNWIK 158s KIMKGSV 158s >sp|P06871|TRY1_CANFA Cationic trypsin precursor (EC 3.4.21.4) - Canis familiaris (Dog). 158s MKTFIFLALLGATVAFPIDDDDKIVGGYTCSRNSVPYQVSLNSGYHFCGG 158s SLINSQWVVSAAHCYKSRIQVRLGEYNIAVSEGGEQFINAAKIIRHPRYN 158s ANTIDNDIMLIKLSSPATLNSRVSAIALPKSCPAAGTQCLISGWGNTQSI 158s GQNYPDVLQCLKAPILSDSVCRNAYPGQISSNMMCLGYMEGGKDSCQGDS 158s GGPVVCNGELQGVVSWGAGCAQKGKPGVSPKVCKYVSWIQQTIAAN 158s >sp|P07478|TRY2_HUMAN Trypsin-2 precursor (EC 3.4.21.4) (Trypsin II) (Anionic trypsinogen) - Homo sapiens (Human). 158s MNLLLILTFVAAAVAAPFDDDDKIVGGYICEENSVPYQVSLNSGYHFCGG 158s SLISEQWVVSAGHCYKSRIQVRLGEHNIEVLEGNEQFINAAKIIRHPKYN 158s SRTLDNDILLIKLSSPAVINSRVSAISLPTAPPAAGTESLISGWGNTLSS 158s GADYPDELQCLDAPVLSQAECEASYPGKITNNMFCVGFLEGGKDSCQGDS 158s GGPVVSNGELQGIVSWGYGCAQKNRPGVYTKVYNYVDWIKDTIAANS 158s >sp|P19799|TRY1_XENLA Trypsin precursor (EC 3.4.21.4) - Xenopus laevis (African clawed frog). 158s MKFLLLCVLLGAAAAFDDDKIIGGATCAKSSVPYIVSLNSGYHFCGGSLI 158s TNQWVVSAAHCYKASIQVRLGEHNIALSEGTEQFISSSKVIRHSGYNSYT 158s LDNDIMLIKLSSPASLNAAVNTVPLPSGCSAAGTSCLISGWGNTLSNGSN 158s YPDLLQCLNAPILTNAQCNSAYPGEITANMICVGYMEGGKDSCQGDSGGP 158s VVCNGQLQGVVSWGYGCAMRNYPGVYTKVCNYNAWIQNTIAAN 158s >sp|P49864|GRAK_RAT Granzyme K precursor (EC 3.4.21.-) (NK-tryptase-2) (NK-Tryp-2) - Rattus norvegicus (Rat). 158s MSFSSSALVFLVAGIYMSSESFHTEIIGGREVQPHSRPFMASIQYRGKHI 158s CGGVLIHPQWVLTAAHCYSRGHSPTVVLGAHSLSKNEPMKQTFEIKEFIP 158s FSGFKSGTNDIMLIKLRTAAELNKHVQLLHLRSKNYIRDGTKCQVTGWGS 158s TKPDVLTTSDTLQEVTVTIISRKRCNSQSYYNHKPVITKDMICAGDRRGE 158s KDSCKGDSGGPLICKGVFHALVSGGYKCGISNKPGVYTLLTKKYQTWIKS 158s KLAPSSAH 158s >sp|Q90629|TRY3_CHICK Trypsin II-P29 precursor (EC 3.4.21.4) - Gallus gallus (Chicken). 158s MKFLFLILSCLGAAVAFPGGADDDKIVGGYTCPEHSVPYQVSLNSGYHFC 158s GGSLINSQWVLSAAHCYKSRIQVRLGEYNIDVQEDSEVVRSSSVIIRHPK 158s YSSITLNNDIMLIKLASAVEYSADIQPIALPSSCAKAGTECLISGWGNTL 158s SNGYNYPELLQCLNAPILSDQECQEAYPGDITSNMICVGFLEGGKDSCQG 158s DSGGPVVCNGELQGIVSWGIGCALKGYPGVYTKVCNYVDWIQETIAAY 158s >sp|P49863|GRAK_HUMAN Granzyme K precursor (EC 3.4.21.-) (Granzyme-3) (NK-tryptase-2) (NK- TRYP-2) (Fragmentin-3) - Homo sapiens (Human). 158s MTKFSSFSLFFLIVGAYMTHVCFNMEIIGGKEVSPHSRPFMASIQYGGHH 158s VCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIK 158s KFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCK 158s VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCA 158s GDAKGQKDSCKGDSGGPLICKGVFHAIVSGGHECGVATKPGIYTLLTKKY 158s QTWIKSNLVPPHTN 158s >sp|O35205|GRAK_MOUSE Granzyme K precursor (EC 3.4.21.-) - Mus musculus (Mouse). 158s MRFSSWALVSLVAGVYMSSECFHTEIIGGREVQPHSRPFMASIQYRSKHI 158s CGGVLIHPQWVLTAAHCYSWFPRGHSPTVVLGAHSLSKNEPMKQTFEIKK 158s FIPFSRLQSGSASHDIMLIKLRTAAELNKNVQLLHLGSKNYLRDGTKCQV 158s TGWGTTKPDLLTASDTLREVTVTIISRKRCNSQSYYNHKPVITKDMICAG 158s DARGQKDSCKGDSGGPLICKGIFHALVSQGYKCGIAKKPGIYTLLTKKYQ 158s TWIKSKLAPSRAH 158s >sp|P32822|TRYB_RAT Trypsin V-B precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 158s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 158s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 158s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 158s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 158s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIQQTVAAN 158s >sp|P00760|TRY1_BOVIN Cationic trypsin precursor (EC 3.4.21.4) (Beta-trypsin) [Contains: Alpha-trypsin chain 1; Alpha-trypsin chain 2] (Fragment) - Bos taurus (Bovine). 158s FIFLALLGAAVAFPVDDDDKIVGGYTCGANTVPYQVSLNSGYHFCGGSLI 158s NSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNT 158s LNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTS 158s YPDVLKCLKAPILSDSSCKSAYPGQITSNMFCAGYLEGGKDSCQGDSGGP 158s VVCSGKLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN 158s >sp|Q92876|KLK6_HUMAN Kallikrein-6 precursor (EC 3.4.21.-) (Protease M) (Neurosin) (Zyme) (SP59) - Homo sapiens (Human). 158s MKKLMVVLSLIAAAWAEEQNKLVHGGPCDKTSHPYQAALYTSGHLLCGGV 158s LIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDA 158s ASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADGD 158s FPDTIQCAYIHLVSREECEHAYPGQITQNMLCAGDEKYGKDSCQGDSGGP 158s LVCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQAK 158s >sp|Q9Y5K2|KLK4_HUMAN Kallikrein-4 precursor (EC 3.4.21.-) (Prostase) (Kallikrein-like protein 1) (KLK-L1) (Enamel matrix serine proteinase 1) - Homo sapiens (Human). 158s MATAGNPWGWFLGYLILGVAGSLVSGSCSQIINGEDCSPHSQPWQAALVM 158s ENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEAS 158s LSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLV 158s SGWGLLANGRMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQK 158s DSCNGDSGGPLICNGYLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 158s VQAS 158s >sp|P32821|TRYA_RAT Trypsin V-A precursor (EC 3.4.21.4) - Rattus norvegicus (Rat). 158s MKICIFFTLLGTVAAFPTEDNDDRIVGGYTCQEHSVPYQVSLNAGSHICG 158s GSLITDQWVLSAAHCYHPQLQVRLGEHNIYEIEGAEQFIDAAKMILHPDY 158s DKWTVDNDIMLIKLKSPATLNSKVSTIPLPQYCPTAGTECLVSGWGVLKF 158s GFESPSVLQCLDAPVLSDSVCHKAYPRQITNNMFCLGFLEGGKDSCQYDS 158s GGPVVCNGEVQGIVSWGDGCALEGKPGVYTKVCNYLNWIHQTIAEN 158s >sp|P12788|TRY4_RAT Trypsin-4 precursor (EC 3.4.21.4) (Trypsin IV) (Pretrypsinogen IV) - Rattus norvegicus (Rat). 158s MKISIFFAFLGAAVALPVNDDDKIVGGYTCPKHLVPYQVSLHDGISHQCG 158s GSLISDQWVLSAAHCYKRKLQVRLGEHNIHVLEGGEQFIDAEKIIRHPEY 158s NKDTLDNDIMLIKLKSPAVLNSQVSTVSLPRSCASTDAQCLVSGWGNTVS 158s IGGKYPALLQCLEAPVLSASSCKKSYPGQITSNMFCLGFLEGGKDSCDGD 158s SGGPVVCNGEIQGIVSWGSVCAMRGKPGVYTKVCNYLSWIQETMANN 158s >sp|Q61096|PRTN3_MOUSE Myeloblastin precursor (EC 3.4.21.76) (Proteinase 3) (PR-3) - Mus musculus (Mouse). 158s MSGSYPSPKGIHPFLLLALVVGGAVQASKIVGGHEARPHSRPYVASLQLS 158s RFPGSHFCGGTLIHPRFVLTAAHCLQDISWQLVTVVLGAHDLLSSEPEQQ 158s KFTISQVFQNNYNPEENLNDVLLLQLNRTASLGKEVAVASLPQQDQTLSQ 158s GTQCLAMGWGRLGTQAPTPRVLQELNVTVVTFLCREHNVCTLVPRRAAGI 158s CFGDSGGPLICNGILHGVDSFVIRECASLQFPDFFARVSMYVDWIQNVLR 158s GAEP 158s >sp|P00764|TRYP_SQUAC Trypsin precursor (EC 3.4.21.4) - Squalus acanthias (Spiny dogfish). 158s APDDDDKIVGGYECPKHAAPWTVSLNVGYHFCGGSLIAPGWVVSAAHCYQ 158s RRIQVRLGEHDISANEGDETYIDSSMVIRHPNYSGYDLDNDIMLIKLSKP 158s AALNRNVDLISLPTGCAYAGEMCLISGWGNTMDGAVSGDQLQCLDAPVLS 158s DAECKGAYPGMITNNMMCVGYMEGGKDSCQGDSGGPVVCNGMLQGIVSWG 158s YGCAERDHPGVYTRVCHYVSWIHETIASV 158s >sp|P32038|CFAD_RAT Complement factor D precursor (EC 3.4.21.46) (C3 convertase activator) (Properdin factor D) (Adipsin) (Endogenous vascular elastase) - Rattus norvegicus (Rat). 158s MHSSVYLVALVVLEAAVCVAQPRGRILGGQEAMAHARPYMASVQVNGTHV 158s CGGTLVDEQWVLSAAHCMDGVTKDEVVQVLLGAHSLSSPEPYKHLYDVQS 158s VVLHPGSRPDSVEDDLMLFKLSHNASLGPHVRPLPLQREDREVKPGTLCD 158s VAGWGVVTHAGRRPDVLQQLTVSIMDRNTCNLRTYHDGAITKNMMCAESN 158s RRDTCRGDSGGPLVCGDAVEAVVTWGSRVCGNRRKPGVFTRVATYVPWIE 158s NVLSGNVSVNVTA 158s >sp|Q7YRZ7|GRAA_BOVIN Granzyme A precursor (EC 3.4.21.78) - Bos taurus (Bovine). 158s MNIPFPFSFPPAICLLLIPGVFPVSCEGIIGGNEVAPHTRRYMALIKGLK 158s LCAGALIKENWVLTAAHCDLKGNPQVILGAHSTSHKEKLDQVFSIKKAIP 158s YPCFDPQTFEGDLQLLQLEGKATMTKAVGILQLPRTEDDVKPHTKCHVAG 158s WGSTKKDACQMSNALREANVTVIDRKICNDAQHYNFNPVIDLSMICAGGR 158s KGEDDSCEGDSGSPLICDNVFRGVTSFGKCGNPQKPGIYILLTKKHLNWI 158s KKTIAGAI 160s autopkgtest [19:27:17]: test run-unit-test: -----------------------] 161s run-unit-test PASS 161s autopkgtest [19:27:18]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 161s autopkgtest [19:27:18]: @@@@@@@@@@@@@@@@@@@@ summary 161s run-unit-test PASS 180s nova [W] Using flock in prodstack6-s390x 180s Creating nova instance adt-plucky-s390x-t-coffee-20250315-192437-juju-7f2275-prod-proposed-migration-environment-2-474dd3bf-66e8-4bcc-9f08-e2791115f0a7 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 180s nova [W] Timed out waiting for 7f245005-c4a1-4372-9b3e-c7eab3a263b4 to get deleted.