0s autopkgtest [19:22:19]: starting date and time: 2025-03-15 19:22:19+0000 0s autopkgtest [19:22:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:22:19]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.s34oo0d0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade sweed --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-29.secgroup --name adt-plucky-s390x-sweed-20250315-192219-juju-7f2275-prod-proposed-migration-environment-2-86dad8f1-1207-4532-82f7-fb3092285b0b --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [19:23:57]: testbed dpkg architecture: s390x 98s autopkgtest [19:23:57]: testbed apt version: 2.9.33 98s autopkgtest [19:23:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s autopkgtest [19:23:58]: testbed release detected to be: None 99s autopkgtest [19:23:58]: updating testbed package index (apt update) 100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 100s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 100s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 100s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 100s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB] 100s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB] 100s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB] 100s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB] 100s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 100s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 100s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB] 100s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB] 100s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B] 100s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 100s Fetched 965 kB in 1s (1263 kB/s) 101s Reading package lists... 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Calculating upgrade... 102s Calculating upgrade... 102s The following packages were automatically installed and are no longer required: 102s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 102s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 102s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 102s linux-tools-6.11.0-8-generic 102s Use 'sudo apt autoremove' to remove them. 102s The following packages will be upgraded: 102s pinentry-curses python3-jinja2 strace 102s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Need to get 652 kB of archives. 102s After this operation, 27.6 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 103s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 103s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 103s Fetched 652 kB in 1s (1191 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 103s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 103s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 103s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 103s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 103s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 103s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 103s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 103s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 103s Setting up strace (6.13+ds-1ubuntu1) ... 103s Processing triggers for man-db (2.13.0-1) ... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s Solving dependencies... 104s The following packages will be REMOVED: 104s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 104s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 104s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 104s linux-tools-6.11.0-8-generic* 104s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 104s After this operation, 167 MB disk space will be freed. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 104s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 104s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 104s Removing libpython3.12t64:s390x (3.12.9-1) ... 104s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 104s Removing libnsl2:s390x (1.3.0-3build3) ... 104s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 104s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 105s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 105s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 105s Processing triggers for libc-bin (2.41-1ubuntu1) ... 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 105s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 105s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 106s autopkgtest [19:24:05]: upgrading testbed (apt dist-upgrade and autopurge) 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 106s Starting 2 pkgProblemResolver with broken count: 0 106s Done 106s Entering ResolveByKeep 106s 106s Calculating upgrade... 107s The following packages will be upgraded: 107s libc-bin libc-dev-bin libc6 libc6-dev locales 107s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s Need to get 9512 kB of archives. 107s After this operation, 8192 B of additional disk space will be used. 107s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 107s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 107s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 107s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 108s Preconfiguring packages ... 108s Fetched 9512 kB in 1s (10.3 MB/s) 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 108s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 108s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 108s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 108s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up libc6:s390x (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 108s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 108s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up libc-bin (2.41-1ubuntu2) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 108s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 108s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 108s Setting up locales (2.41-1ubuntu2) ... 109s Generating locales (this might take a while)... 110s en_US.UTF-8... done 110s Generation complete. 110s Setting up libc-dev-bin (2.41-1ubuntu2) ... 110s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 110s Processing triggers for man-db (2.13.0-1) ... 110s Processing triggers for systemd (257.3-1ubuntu3) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Starting pkgProblemResolver with broken count: 0 111s Starting 2 pkgProblemResolver with broken count: 0 111s Done 111s Solving dependencies... 112s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [19:24:11]: rebooting testbed after setup commands that affected boot 132s autopkgtest [19:24:31]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 135s autopkgtest [19:24:34]: @@@@@@@@@@@@@@@@@@@@ apt-source sweed 136s Get:1 http://ftpmaster.internal/ubuntu plucky/universe sweed 3.2.1+dfsg-6 (dsc) [1978 B] 136s Get:2 http://ftpmaster.internal/ubuntu plucky/universe sweed 3.2.1+dfsg-6 (tar) [62.1 kB] 136s Get:3 http://ftpmaster.internal/ubuntu plucky/universe sweed 3.2.1+dfsg-6 (diff) [7784 B] 137s gpgv: Signature made Tue Dec 3 10:24:07 2024 UTC 137s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 137s gpgv: issuer "tille@debian.org" 137s gpgv: Can't check signature: No public key 137s dpkg-source: warning: cannot verify inline signature for ./sweed_3.2.1+dfsg-6.dsc: no acceptable signature found 137s autopkgtest [19:24:36]: testing package sweed version 3.2.1+dfsg-6 137s autopkgtest [19:24:36]: build not needed 137s autopkgtest [19:24:36]: test run-unit-test: preparing testbed 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 138s The following NEW packages will be installed: 138s sweed 138s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 138s Need to get 70.3 kB of archives. 138s After this operation, 151 kB of additional disk space will be used. 138s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x sweed s390x 3.2.1+dfsg-6 [70.3 kB] 139s Fetched 70.3 kB in 0s (253 kB/s) 139s Selecting previously unselected package sweed. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 139s Preparing to unpack .../sweed_3.2.1+dfsg-6_s390x.deb ... 139s Unpacking sweed (3.2.1+dfsg-6) ... 139s Setting up sweed (3.2.1+dfsg-6) ... 139s Processing triggers for man-db (2.13.0-1) ... 140s autopkgtest [19:24:39]: test run-unit-test: [----------------------- 140s Test 1 140s 140s 140s _______________ 140s 140s SweeD 140s _______________ 140s 140s 140s 140s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 140s 140s 140s Command: 140s 140s SweeD -name test1 -input ms.out -grid 15 -length 1000 140s 140s 140s Alignment 1 140s 140s Sequences: 5 140s Sites: 6 140s Discarded sites: 0 140s 140s Processing: 0.00 seconds 140s 140s Position: 7.360000e+02 140s Likelihood: 1.716739e-01 140s Alpha: 1.012449e-01 140s 140s 140s Alignment 2 140s 140s Sequences: 5 140s Sites: 4 140s Discarded sites: 0 140s 140s Processing: 0.00 seconds 140s 140s Position: 4.260000e+02 140s Likelihood: 6.774829e-03 140s Alpha: 2.089549e-01 140s 140s 140s Total elapsed time 0.00 seconds. 140s 140s 140s PASS 140s Test 2 140s 140s 140s _______________ 140s 140s SweeD 140s _______________ 140s 140s 140s 140s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 140s 140s 140s Command: 140s 140s SweeD -name test3 -input macs.out -length 10000 -grid 100 140s 140s 140s Alignment 1 140s 140s Sequences: 40 140s Sites: 6 140s Discarded sites: 0 140s 140s Processing: 0.01 seconds 140s 140s Position: 1.197000e+03 140s Likelihood: 3.209704e-04 140s Alpha: 6.762359e-03 140s 140s 140s Alignment 2 140s 140s Sequences: 40 140s Sites: 5 140s Discarded sites: 0 140s 140s Processing: 0.01 seconds 140s 140s Position: 7.045000e+03 140s Likelihood: 9.160188e-01 140s Alpha: 5.543519e-03 140s 140s 140s Total elapsed time 0.03 seconds. 140s 140s 140s PASS 140s Test 3 140s 140s 140s _______________ 140s 140s SweeD 140s _______________ 140s 140s 140s 140s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 140s 140s 140s Command: 140s 140s SweeD -name test -input data.VCF -grid 15 140s 140s 140s Alignment 1 140s 140s Chromosome: 20 140s Sequences: 6 140s Sites: 3 140s Discarded sites: 2 140s 140s Processing: 0.00 seconds 140s 140s Position: 0.000000e+00 140s Likelihood: 0.000000e+00 140s Alpha: 0.000000e+00 140s 140s 140s Total elapsed time 0.00 seconds. 140s 140s 140s PASS 140s Test 4 140s 140s 140s _______________ 140s 140s SweeD 140s _______________ 140s 140s 140s 140s SweeD version 3.1 released by Nikolaos Alachiotis and Pavlos Pavlidis in January 2013. 140s 140s 140s Command: 140s 140s SweeD -name test -input data.FA -grid 15 140s 140s 140s Alignment 1 140s segsites: 60 length: 60 140s Outgroup: none 140s 140s Sequences: 4 140s Sites: 60 140s Discarded sites: 26 140s 140s Processing: 0.00 seconds 140s 140s Position: 0.000000e+00 140s Likelihood: 0.000000e+00 140s Alpha: 0.000000e+00 140s 140s 140s Alignment 2 140s segsites: 60 length: 60 140s Outgroup: none 140s 140s Sequences: 4 140s Sites: 60 140s Discarded sites: 26 140s 140s Processing: 0.00 seconds 140s 140s Position: 0.000000e+00 140s Likelihood: 0.000000e+00 140s Alpha: 0.000000e+00 140s 140s 140s Total elapsed time 0.00 seconds. 140s 140s 140s PASS 141s autopkgtest [19:24:40]: test run-unit-test: -----------------------] 141s autopkgtest [19:24:40]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 141s run-unit-test PASS 141s autopkgtest [19:24:40]: @@@@@@@@@@@@@@@@@@@@ summary 141s run-unit-test PASS 147s nova [W] Using flock in prodstack6-s390x 147s flock: timeout while waiting to get lock 147s Creating nova instance adt-plucky-s390x-sweed-20250315-192219-juju-7f2275-prod-proposed-migration-environment-2-86dad8f1-1207-4532-82f7-fb3092285b0b from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 147s nova [W] Timed out waiting for 2aa9c2bd-2b93-4be5-9a0f-bec6362981dc to get deleted.