0s autopkgtest [19:17:19]: starting date and time: 2025-03-15 19:17:19+0000
  0s autopkgtest [19:17:19]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [19:17:19]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.n2z2cldy/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade stacks --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup --name adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
1018s nova [W] Using flock in prodstack6-s390x
1018s flock: timeout while waiting to get lock
1018s Creating nova instance adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
1018s nova [E] nova boot failed (attempt #0):
1018s nova [E] DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
1018s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
1018s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
1018s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
1018s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://keystone.ps6.canonical.com:5000/v3 -H "Accept: application/json" -H "User-Agent: nova keystoneauth1/4.0.0 python-requests/2.22.0 CPython/3.8.10"
1018s DEBUG (connectionpool:962) Starting new HTTPS connection (1): keystone.ps6.canonical.com:5000
1018s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "GET /v3 HTTP/1.1" 200 267
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 267 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:26 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) Vary: X-Auth-Token x-openstack-request-id: req-06d37c68-cc32-4bfb-8df3-e75802ad62ab
1018s DEBUG (session:580) RESP BODY: {"version": {"id": "v3.14", "status": "stable", "updated": "2020-04-07T00:00:00Z", "links": [{"rel": "self", "href": "https://keystone.ps6.canonical.com:5000/v3/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.identity-v3+json"}]}}
1018s DEBUG (session:946) GET call to https://keystone.ps6.canonical.com:5000/v3 used request id req-06d37c68-cc32-4bfb-8df3-e75802ad62ab
1018s DEBUG (base:182) Making authentication request to https://keystone.ps6.canonical.com:5000/v3/auth/tokens
1018s DEBUG (connectionpool:429) https://keystone.ps6.canonical.com:5000 "POST /v3/auth/tokens HTTP/1.1" 201 12521
1018s DEBUG (base:187) {"token": {"methods": ["password"], "user": {"domain": {"id": "default", "name": "Default"}, "id": "fda033b8c7ea463db1c3747f74a59d10", "name": "prod-proposed-migration-s390x", "password_expires_at": null}, "audit_ids": ["kcQDbEQeRSWf9aZiHlfIIA"], "expires_at": "2025-03-16T19:18:27.000000Z", "issued_at": "2025-03-15T19:18:27.000000Z", "project": {"domain": {"id": "default", "name": "Default"}, "id": "ad292334f14047cc96e9c50587dfe285", "name": "prod-proposed-migration-s390x_project"}, "is_domain": false, "roles": [{"id": "80674fb26dab46e9a6bd57e7f8193360", "name": "load-balancer_member"}, {"id": "86bf3043974746c2bf52c2a9f362f986", "name": "reader"}, {"id": "15cf997650e345b7b21c02b5cdb7d84a", "name": "member"}], "is_admin_project": false, "catalog": [{"endpoints": [{"id": "213cdf38198c4581bd5b7d6d0836923b", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "67061eee26944a1a8009f9d07be19738", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/", "region": "prodstack6"}, {"id": "fc88c52c749a47d08a24a2c7efbde01b", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/", "region": "prodstack6"}], "id": "06e4714942634054bf9aa11715312b4e", "type": "s3", "name": "s3"}, {"endpoints": [{"id": "8aa44c94b63746bd9b37f1008ad55fa8", "interface": "admin", "region_id": "prodstack6", "url": "https://aodh-admin.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "92cf08a80a0242ebbca8ec893cf332b1", "interface": "public", "region_id": "prodstack6", "url": "https://aodh.ps6.canonical.com:8042", "region": "prodstack6"}, {"id": "d8139c6e11ae4edcb78981c12bd53212", "interface": "internal", "region_id": "prodstack6", "url": "https://aodh-internal.ps6.canonical.com:8042", "region": "prodstack6"}], "id": "2fb939b0b969435c8f0c5fa4edb4de94", "type": "alarming", "name": "aodh"}, {"endpoints": [{"id": "a49fcc80e658411885f88cdd8432a571", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "b23866fddba8415885b06c064c34b94b", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8000/v1", "region": "prodstack6"}, {"id": "f84ae55197f94b8392a678f35c82ca26", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8000/v1", "region": "prodstack6"}], "id": "3d4b59f7dab644b2b527e8e96b697545", "type": "cloudformation", "name": "heat-cfn"}, {"endpoints": [{"id": "2e0143334c6241169f45f1c11970c6bc", "interface": "public", "region_id": "prodstack6", "url": "https://heat.ps6.canonical.com:8004/v1/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "5e19c32243c04a3faf1e5f9ab900c260", "interface": "internal", "region_id": "prodstack6", "url": "https://heat-internal.ps6.canonical.com:8004/v1/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "b3fc5c88ec8543a691fec75726b86967", "interface": "admin", "region_id": "prodstack6", "url": "https://heat-admin.ps6.canonical.com:8004/v1/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}], "id": "43b926205044476b8093b18d8ce0a9e4", "type": "orchestration", "name": "heat"}, {"endpoints": [{"id": "a47569b96e5b4146a312e4673504557c", "interface": "public", "region_id": "prodstack6", "url": "https://glance.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "bba35c4ab04f4114a2a34e65568537bd", "interface": "internal", "region_id": "prodstack6", "url": "https://glance-internal.ps6.canonical.com:9292", "region": "prodstack6"}, {"id": "ef769f1117c74a62a279131486c89628", "interface": "admin", "region_id": "prodstack6", "url": "https://glance-admin.ps6.canonical.com:9292", "region": "prodstack6"}], "id": "49de724549524bd78e9cd46a4477226f", "type": "image", "name": "glance"}, {"endpoints": [{"id": "a1a41e9a1e2d42e5b6cd5380cd1e21bf", "interface": "admin", "region_id": "prodstack6", "url": "https://cinder-admin.ps6.canonical.com:8776/v3/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "d2309a99724b4111827482c68a832c0c", "interface": "public", "region_id": "prodstack6", "url": "https://cinder.ps6.canonical.com:8776/v3/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "f8a02e3949ff42afa772eb5e74dbef9f", "interface": "internal", "region_id": "prodstack6", "url": "https://cinder-internal.ps6.canonical.com:8776/v3/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}], "id": "5bf6578a631349e3af4bf36d7adb18e1", "type": "volumev3", "name": "cinderv3"}, {"endpoints": [{"id": "01d84128f36444e9b01549b86bd69116", "interface": "admin", "region_id": "prodstack6", "url": "https://barbican-admin.ps6.canonical.com:9312", "region": "prodstack6"}, {"id": "0ce4a8777e0b40a88f7fc0f77e34a605", "interface": "public", "region_id": "prodstack6", "url": "https://barbican.ps6.canonical.com:9311", "region": "prodstack6"}, {"id": "f507ba49e4a7435cb330234217c92449", "interface": "internal", "region_id": "prodstack6", "url": "https://barbican-internal.ps6.canonical.com:9311", "region": "prodstack6"}], "id": "62cb1c3d9f6c45979c13516a6b3ff114", "type": "key-manager", "name": "barbican"}, {"endpoints": [{"id": "3cb6121bd8f14da8aa2fba7be823a2b4", "interface": "internal", "region_id": "prodstack6", "url": "https://neutron-internal.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "46ba11d133fe4e8f9e8f9097ba737682", "interface": "admin", "region_id": "prodstack6", "url": "https://neutron-admin.ps6.canonical.com:9696", "region": "prodstack6"}, {"id": "d872eb6aa23d40009165aa3dcdce3948", "interface": "public", "region_id": "prodstack6", "url": "https://neutron.ps6.canonical.com:9696", "region": "prodstack6"}], "id": "759cb6fdfbc146dd8b9d1ba444c4b9db", "type": "network", "name": "neutron"}, {"endpoints": [{"id": "4349d565f72446da9699269f85df5e8b", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v2/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "a483dcc58f5e415e9ec739c94474e609", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v2/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "c1f14236723e42878562d8dd63d5a6a0", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v2/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}], "id": "93fc4008035946deb1f433c2dd905a5d", "type": "sharev2", "name": "manilav2"}, {"endpoints": [{"id": "0fa148793c7249c8b187b6b4ff425731", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "555ade266a6b4bcc81b6e5abf607aec5", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_e4b04ca58d734ed0aa29e306adad4f79/simplestreams/data", "region": "prodstack6"}, {"id": "7dad1a7b1552465686424fc014463173", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift/simplestreams/data", "region": "prodstack6"}], "id": "977dd359af1a4fcc91a9daf4dc33b0f3", "type": "product-streams", "name": "image-stream"}, {"endpoints": [{"id": "12d30eabcdec4831bd15273d55b1cbab", "interface": "internal", "region_id": "prodstack6", "url": "https://manila-internal.ps6.canonical.com:8786/v1/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "29d35b2b483346479f1ff1a13604d50e", "interface": "admin", "region_id": "prodstack6", "url": "https://manila-admin.ps6.canonical.com:8786/v1/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "4aa1422b8f5945d8aed9ba6a8d670e5c", "interface": "public", "region_id": "prodstack6", "url": "https://manila.ps6.canonical.com:8786/v1/ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}], "id": "ac5e4f28fa794cde99f1d7ffc1b664e5", "type": "share", "name": "manila"}, {"endpoints": [{"id": "c7db93d54a684d8caeae1d9e18a59118", "interface": "admin", "region_id": "prodstack6", "url": "https://nova-admin.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "dd7a796f401b477f9f1b5bbc05747d8d", "interface": "public", "region_id": "prodstack6", "url": "https://nova.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}, {"id": "e7ecb038d830462ea67b0b463af5e013", "interface": "internal", "region_id": "prodstack6", "url": "https://nova-internal.ps6.canonical.com:8774/v2.1", "region": "prodstack6"}], "id": "b4519af08e174d4a8333a2d14ac3ba3b", "type": "compute", "name": "nova"}, {"endpoints": [{"id": "02ef5b6154934ffd97d8b5b8e4d70d2a", "interface": "internal", "region_id": "prodstack6", "url": "https://radosgw-internal.ps6.canonical.com:443/swift/v1/AUTH_ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "2741abe526e94842a4fa801423ba1ef0", "interface": "public", "region_id": "prodstack6", "url": "https://radosgw.ps6.canonical.com:443/swift/v1/AUTH_ad292334f14047cc96e9c50587dfe285", "region": "prodstack6"}, {"id": "3742f9406c604516933d6fd8c29e0880", "interface": "admin", "region_id": "prodstack6", "url": "https://radosgw-admin.ps6.canonical.com:443/swift", "region": "prodstack6"}], "id": "c7f07a7b3b3c408c96200dfd1d1a0f6f", "type": "object-store", "name": "swift"}, {"endpoints": [{"id": "06d4ed6c160a43f2b7fa7f80ad1dc709", "interface": "internal", "region_id": "prodstack6", "url": "https://designate-internal.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "1e240624a50c4ca0aaa6ef63cbc94f1b", "interface": "admin", "region_id": "prodstack6", "url": "https://designate-admin.ps6.canonical.com:9001", "region": "prodstack6"}, {"id": "f94d7d17997a43fd9c63b34c43301c6e", "interface": "public", "region_id": "prodstack6", "url": "https://designate.ps6.canonical.com:9001", "region": "prodstack6"}], "id": "cf82013d63844fedbe96bcacb6bd1fef", "type": "dns", "name": "designate"}, {"endpoints": [{"id": "4a688340be464710bfa60bf3f88f41c4", "interface": "admin", "region_id": "prodstack6", "url": "https://gnocchi-admin.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "a5a95506c96d4716adb4efc3ac9051be", "interface": "public", "region_id": "prodstack6", "url": "https://gnocchi.ps6.canonical.com:8041", "region": "prodstack6"}, {"id": "eebc17a086834f8fa8bb6b35c8061a8c", "interface": "internal", "region_id": "prodstack6", "url": "https://gnocchi-internal.ps6.canonical.com:8041", "region": "prodstack6"}], "id": "d10589e854a446a5b852593f33f170a7", "type": "metric", "name": "gnocchi"}, {"endpoints": [{"id": "08f66df28d0f47f3bec12f29e06d85ac", "interface": "admin", "region_id": "prodstack6", "url": "https://keystone-admin.ps6.canonical.com:35357/v3", "region": "prodstack6"}, {"id": "46d270b45ceb42db902f4d241afa6a70", "interface": "public", "region_id": "prodstack6", "url": "https://keystone.ps6.canonical.com:5000/v3", "region": "prodstack6"}, {"id": "a4addee11d9349cfa46ec6660dbad947", "interface": "internal", "region_id": "prodstack6", "url": "https://keystone-internal.ps6.canonical.com:5000/v3", "region": "prodstack6"}], "id": "deb38a775a9b4e87a8de9e3eed779882", "type": "identity", "name": "keystone"}, {"endpoints": [{"id": "18b4af5f40664babb94e884c6a53ccf3", "interface": "admin", "region_id": "prodstack6", "url": "https://octavia-admin.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "2b6f7ba7f9944ee1aebd6dccc5223b2d", "interface": "internal", "region_id": "prodstack6", "url": "https://octavia-internal.ps6.canonical.com:9876", "region": "prodstack6"}, {"id": "5e3012e9c79e4890be4d964b6208f5c6", "interface": "public", "region_id": "prodstack6", "url": "https://octavia.ps6.canonical.com:9876", "region": "prodstack6"}], "id": "e00337be20d54948b66a1c3109b885c6", "type": "load-balancer", "name": "octavia"}, {"endpoints": [{"id": "2d2942b35f3041389ad810f679d02f22", "interface": "public", "region_id": "prodstack6", "url": "https://placement.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "2e3beaac7ac14284b72e2592820ad725", "interface": "admin", "region_id": "prodstack6", "url": "https://placement-admin.ps6.canonical.com:8778", "region": "prodstack6"}, {"id": "91060f6df9ae444f81808adf40540d94", "interface": "internal", "region_id": "prodstack6", "url": "https://placement-internal.ps6.canonical.com:8778", "region": "prodstack6"}], "id": "edc6e37f154f4c0ab3dd4d52b82bf873", "type": "placement", "name": "placement"}]}}
1018s REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b"
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1 -H "Accept: application/json" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b"
1018s DEBUG (connectionpool:962) Starting new HTTPS connection (1): nova.ps6.canonical.com:8774
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1 HTTP/1.1" 302 0
1018s RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sat, 15 Mar 2025 19:18:27 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-97c999ff-1b51-468e-81cd-15a70f35d362 x-openstack-request-id: req-97c999ff-1b51-468e-81cd-15a70f35d362
1018s DEBUG (session:548) RESP: [302] Connection: Keep-Alive Content-Length: 0 Content-Type: text/plain; charset=utf8 Date: Sat, 15 Mar 2025 19:18:27 GMT Keep-Alive: timeout=75, max=1000 Location: https://nova.ps6.canonical.com:8774/v2.1/ Server: Apache/2.4.52 (Ubuntu) x-compute-request-id: req-97c999ff-1b51-468e-81cd-15a70f35d362 x-openstack-request-id: req-97c999ff-1b51-468e-81cd-15a70f35d362
1018s RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
1018s DEBUG (session:580) RESP BODY: Omitted, Content-Type is set to text/plain; charset=utf8. Only application/json responses have their bodies logged.
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/ HTTP/1.1" 200 397
1018s RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:27 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-d734f8df-dd33-4184-bc86-a7795a659730 x-openstack-request-id: req-d734f8df-dd33-4184-bc86-a7795a659730
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 397 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:27 GMT Keep-Alive: timeout=75, max=999 OpenStack-API-Version: compute 2.1 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.1 x-compute-request-id: req-d734f8df-dd33-4184-bc86-a7795a659730 x-openstack-request-id: req-d734f8df-dd33-4184-bc86-a7795a659730
1018s RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
1018s DEBUG (session:580) RESP BODY: {"version": {"id": "v2.1", "status": "CURRENT", "version": "2.90", "min_version": "2.1", "updated": "2013-07-23T11:33:21Z", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/"}, {"rel": "describedby", "type": "text/html", "href": "http://docs.openstack.org/"}], "media-types": [{"base": "application/json", "type": "application/vnd.openstack.compute+json;version=2.1"}]}}
1018s GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-d734f8df-dd33-4184-bc86-a7795a659730
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/ used request id req-d734f8df-dd33-4184-bc86-a7795a659730
1018s DEBUG (extension:189) found extension EntryPoint.parse('v1password = swiftclient.authv1:PasswordLoader')
1018s DEBUG (extension:189) found extension EntryPoint.parse('noauth = cinderclient.contrib.noauth:CinderNoAuthLoader')
1018s DEBUG (extension:189) found extension EntryPoint.parse('admin_token = keystoneauth1.loading._plugins.admin_token:AdminToken')
1018s DEBUG (extension:189) found extension EntryPoint.parse('none = keystoneauth1.loading._plugins.noauth:NoAuth')
1018s DEBUG (extension:189) found extension EntryPoint.parse('password = keystoneauth1.loading._plugins.identity.generic:Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('token = keystoneauth1.loading._plugins.identity.generic:Token')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v2password = keystoneauth1.loading._plugins.identity.v2:Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v2token = keystoneauth1.loading._plugins.identity.v2:Token')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3adfspassword = keystoneauth1.extras._saml2._loading:ADFSPassword')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3applicationcredential = keystoneauth1.loading._plugins.identity.v3:ApplicationCredential')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3fedkerb = keystoneauth1.extras.kerberos._loading:MappedKerberos')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3kerberos = keystoneauth1.extras.kerberos._loading:Kerberos')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3multifactor = keystoneauth1.loading._plugins.identity.v3:MultiFactor')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oauth1 = keystoneauth1.extras.oauth1._loading:V3OAuth1')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcaccesstoken = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAccessToken')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcauthcode = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectAuthorizationCode')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcclientcredentials = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectClientCredentials')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3oidcpassword = keystoneauth1.loading._plugins.identity.v3:OpenIDConnectPassword')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3password = keystoneauth1.loading._plugins.identity.v3:Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3samlpassword = keystoneauth1.extras._saml2._loading:Saml2Password')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3token = keystoneauth1.loading._plugins.identity.v3:Token')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3tokenlessauth = keystoneauth1.loading._plugins.identity.v3:TokenlessAuth')
1018s DEBUG (extension:189) found extension EntryPoint.parse('v3totp = keystoneauth1.loading._plugins.identity.v3:TOTP')
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:962) Starting new HTTPS connection (1): glance.ps6.canonical.com:9292
1018s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61 HTTP/1.1" 200 2323
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2323 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:27 GMT Keep-Alive: timeout=75, max=1000 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-22515798-8087-41b6-8c8b-7a742d08afad
1018s DEBUG (session:580) RESP BODY: {"architecture": "s390x", "base_image_ref": "37828cef-4e21-48ba-b7d5-63f9eea03051", "boot_roles": "load-balancer_member,reader,member", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_input_bus": "usb", "hw_machine_type": "s390-ccw-virtio", "hw_pointer_model": "usbtablet", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "28febb37-f1cc-40ec-9eae-a91047fbd733", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "ad292334f14047cc96e9c50587dfe285", "owner_project_name": "prod-proposed-migration-s390x_project", "owner_user_name": "prod-proposed-migration-s390x", "product_name": "com.ubuntu.cloud.daily:server:25.04:s390x", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"s390x\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"e18cf68b0057508b4f373becf7e386ce\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-s390x-server-20250113\", \"release\": \"plucky\", \"release_codename\": \"Pluck", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "fda033b8c7ea463db1c3747f74a59d10", "version_name": "20250113", "name": "adt/ubuntu-plucky-s390x-server-20250315.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2197159936, "virtual_size": 21474836480, "status": "active", "checksum": "64f971a37def88e27ed58c6288b9ddf7", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "ad292334f14047cc96e9c50587dfe285", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "549be9d987209a5e865444b0d89bb920e3f50ccbd0557944305c0e7041419dd26612381ad0c6b243408f88ed6ad7184b19d2ef2fb86be1d041eae051edef0f39", "id": "3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "created_at": "2025-03-15T01:51:56Z", "updated_at": "2025-03-15T01:52:20Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/3d3557fa-fd0f-4bba-9b89-8d5964e09f61/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/3d3557fa-fd0f-4bba-9b89-8d5964e09f61/snap", "tags": [], "self": "/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "file": "/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61/file", "schema": "/v2/schemas/image", "stores": "ceph"}
1018s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61 used request id req-22515798-8087-41b6-8c8b-7a742d08afad
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-s390x -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/autopkgtest-s390x HTTP/1.1" 404 90
1018s DEBUG (session:548) RESP: [404] Connection: Keep-Alive Content-Length: 90 Content-Type: application/json; charset=UTF-8 Date: Sat, 15 Mar 2025 19:18:27 GMT Keep-Alive: timeout=75, max=998 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-41d202da-6ae3-47a4-bacb-c812644586d7 x-openstack-request-id: req-41d202da-6ae3-47a4-bacb-c812644586d7
1018s DEBUG (session:580) RESP BODY: {"itemNotFound": {"code": 404, "message": "Flavor autopkgtest-s390x could not be found."}}
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/autopkgtest-s390x used request id req-41d202da-6ae3-47a4-bacb-c812644586d7
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors?is_public=None HTTP/1.1" 200 39613
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 39613 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:28 GMT Keep-Alive: timeout=75, max=997 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-04b72b75-8a3b-4f96-84e7-dee082bf9ad4 x-openstack-request-id: req-04b72b75-8a3b-4f96-84e7-dee082bf9ad4
1018s DEBUG (session:580) RESP BODY: {"flavors": [{"id": "015f264d-5a74-4ea6-9f3a-84d479a1d30b", "name": "builder-s390x-cpu2-ram16-disk68", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/015f264d-5a74-4ea6-9f3a-84d479a1d30b"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/015f264d-5a74-4ea6-9f3a-84d479a1d30b"}], "description": null}, {"id": "03162251-b47f-403b-a928-104b4bc66898", "name": "builder-s390x-cpu2-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/03162251-b47f-403b-a928-104b4bc66898"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/03162251-b47f-403b-a928-104b4bc66898"}], "description": null}, {"id": "036e1b49-3381-4134-b8d6-78d39f1ebf15", "name": "builder-s390x-cpu4-ram128-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/036e1b49-3381-4134-b8d6-78d39f1ebf15"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/036e1b49-3381-4134-b8d6-78d39f1ebf15"}], "description": null}, {"id": "03d6b00d-4875-44aa-b60c-e1162d975180", "name": "builder-s390x-cpu16-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/03d6b00d-4875-44aa-b60c-e1162d975180"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/03d6b00d-4875-44aa-b60c-e1162d975180"}], "description": null}, {"id": "0438cb2c-c54c-43ca-95f7-eb1879ae1b3c", "name": "builder-s390x-cpu8-ram4-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0438cb2c-c54c-43ca-95f7-eb1879ae1b3c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0438cb2c-c54c-43ca-95f7-eb1879ae1b3c"}], "description": null}, {"id": "05196979-e04b-475f-8ec6-ee66f924a5bb", "name": "builder-s390x-cpu4-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/05196979-e04b-475f-8ec6-ee66f924a5bb"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/05196979-e04b-475f-8ec6-ee66f924a5bb"}], "description": null}, {"id": "0a154e63-cfad-4957-96a6-5a4123266f79", "name": "autopkgtest-big-s390x", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0a154e63-cfad-4957-96a6-5a4123266f79"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0a154e63-cfad-4957-96a6-5a4123266f79"}], "description": null}, {"id": "0b20eff1-76ca-4276-97f5-27051f12e2d2", "name": "builder-s390x-cpu4-ram8-disk120", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/0b20eff1-76ca-4276-97f5-27051f12e2d2"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/0b20eff1-76ca-4276-97f5-27051f12e2d2"}], "description": null}, {"id": "15fcec10-3323-46ee-9efa-2a120b200e15", "name": "builder-s390x-cpu2-ram32-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/15fcec10-3323-46ee-9efa-2a120b200e15"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/15fcec10-3323-46ee-9efa-2a120b200e15"}], "description": null}, {"id": "16f0eee6-3271-4d64-84cc-0ed22a1ba47d", "name": "builder-s390x-cpu16-ram32-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/16f0eee6-3271-4d64-84cc-0ed22a1ba47d"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/16f0eee6-3271-4d64-84cc-0ed22a1ba47d"}], "description": null}, {"id": "1976c354-176d-4058-8b7c-1e874a6592ef", "name": "builder-s390x-cpu24-ram128-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1976c354-176d-4058-8b7c-1e874a6592ef"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1976c354-176d-4058-8b7c-1e874a6592ef"}], "description": null}, {"id": "19be4598-edae-4564-ba9a-6f31af8d2aca", "name": "builder-s390x-cpu8-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/19be4598-edae-4564-ba9a-6f31af8d2aca"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/19be4598-edae-4564-ba9a-6f31af8d2aca"}], "description": null}, {"id": "1b4fa1eb-79de-49e7-a0d8-1e66ecce4b5c", "name": "builder-s390x-cpu2-ram12-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1b4fa1eb-79de-49e7-a0d8-1e66ecce4b5c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/1b4fa1eb-79de-49e7-a0d8-1e66ecce4b5c"}], "description": null}, {"id": "1ec9bf7b-ea9d-471f-b669-39a8be72a52e", "name": "builder-s390x-cpu2-ram32-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/1ec9bf7b-ea9d-471f-b669-39a8be72a52e"}, {"rel": "bookmark", "href": 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"https://nova.ps6.canonical.com:8774/flavors/d888376b-4a42-456e-ad43-f53ddf7fdff6"}], "description": null}, {"id": "d99596f5-7a6c-43d9-87a2-e70196e44165", "name": "builder-s390x-cpu2-ram8-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/d99596f5-7a6c-43d9-87a2-e70196e44165"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/d99596f5-7a6c-43d9-87a2-e70196e44165"}], "description": null}, {"id": "e2519401-eca8-46bd-a933-afe294d17860", "name": "builder-s390x-cpu128-ram64-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e2519401-eca8-46bd-a933-afe294d17860"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e2519401-eca8-46bd-a933-afe294d17860"}], "description": null}, {"id": "e643c791-e248-4326-9ed4-c5a26211f323", "name": "builder-s390x-cpu4-ram40-disk188", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e643c791-e248-4326-9ed4-c5a26211f323"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e643c791-e248-4326-9ed4-c5a26211f323"}], "description": null}, {"id": "e875d4c6-0b44-489d-a34e-b6fa5eb4ae4c", "name": "builder-s390x-cpu64-ram128-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e875d4c6-0b44-489d-a34e-b6fa5eb4ae4c"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e875d4c6-0b44-489d-a34e-b6fa5eb4ae4c"}], "description": null}, {"id": "e98001c9-fd71-483f-aea0-1369879397ff", "name": "builder-s390x-cpu4-ram12-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e98001c9-fd71-483f-aea0-1369879397ff"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e98001c9-fd71-483f-aea0-1369879397ff"}], "description": null}, {"id": "e9cc765b-4f31-4512-8c37-135c93482f04", "name": "builder-s390x-cpu4-ram16-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/e9cc765b-4f31-4512-8c37-135c93482f04"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/e9cc765b-4f31-4512-8c37-135c93482f04"}], "description": null}, {"id": "f3706939-5c5e-4fca-9836-693e2b6b53d6", "name": "builder-s390x-cpu16-ram8-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f3706939-5c5e-4fca-9836-693e2b6b53d6"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f3706939-5c5e-4fca-9836-693e2b6b53d6"}], "description": null}, {"id": "f411bb1f-bf2d-4500-83c8-bb2fa2c22984", "name": "builder-s390x-cpu16-ram16-disk100", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f411bb1f-bf2d-4500-83c8-bb2fa2c22984"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f411bb1f-bf2d-4500-83c8-bb2fa2c22984"}], "description": null}, {"id": "f8896958-ca97-4c45-8447-0cbfb454a1c3", "name": "builder-s390x-cpu8-ram4-disk50", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f8896958-ca97-4c45-8447-0cbfb454a1c3"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f8896958-ca97-4c45-8447-0cbfb454a1c3"}], "description": null}, {"id": "f9f1f492-217b-44b0-8ae5-c600b7a2d2c5", "name": "builder-s390x-cpu8-ram12-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/f9f1f492-217b-44b0-8ae5-c600b7a2d2c5"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/f9f1f492-217b-44b0-8ae5-c600b7a2d2c5"}], "description": null}, {"id": "fe92de60-14a4-4d76-a8d0-aa915da2be82", "name": "builder-s390x-cpu2-ram8-disk20", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/fe92de60-14a4-4d76-a8d0-aa915da2be82"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/fe92de60-14a4-4d76-a8d0-aa915da2be82"}], "description": null}]}
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors?is_public=None used request id req-04b72b75-8a3b-4f96-84e7-dee082bf9ad4
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/flavors/5cac32a0-85d2-4049-8cd6-ce7164372b01 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/flavors/5cac32a0-85d2-4049-8cd6-ce7164372b01 HTTP/1.1" 200 619
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 619 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:28 GMT Keep-Alive: timeout=75, max=996 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-6e60efd0-b0cd-422e-bb85-bcfb6e2125a3 x-openstack-request-id: req-6e60efd0-b0cd-422e-bb85-bcfb6e2125a3
1018s DEBUG (session:580) RESP BODY: {"flavor": {"id": "5cac32a0-85d2-4049-8cd6-ce7164372b01", "name": "autopkgtest-s390x", "ram": 4096, "disk": 20, "swap": 0, "OS-FLV-EXT-DATA:ephemeral": 0, "OS-FLV-DISABLED:disabled": false, "vcpus": 2, "os-flavor-access:is_public": false, "rxtx_factor": 1.0, "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/flavors/5cac32a0-85d2-4049-8cd6-ce7164372b01"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/flavors/5cac32a0-85d2-4049-8cd6-ce7164372b01"}], "description": null, "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-s390x", "hw_rng:allowed": "True"}}}
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/flavors/5cac32a0-85d2-4049-8cd6-ce7164372b01 used request id req-6e60efd0-b0cd-422e-bb85-bcfb6e2125a3
1018s DEBUG (session:517) REQ: curl -g -i -X POST https://nova.ps6.canonical.com:8774/v2.1/servers -H "Accept: application/json" -H "Content-Type: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87" -d '{"server": {"name": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2", "imageRef": "3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "flavorRef": "5cac32a0-85d2-4049-8cd6-ce7164372b01", "user_data": "I2Nsb3VkLWNvbmZpZwpob3N0bmFtZTogYXV0b3BrZ3Rlc3QKZnFkbjogYXV0b3BrZ3Rlc3QubG9jYWwKbWFuYWdlX2V0Y19ob3N0czogdHJ1ZQphcHRfdXBkYXRlOiB0cnVlCmFwdF91cGdyYWRlOiBmYWxzZQphcHRfbWlycm9yOiBodHRwOi8vZnRwbWFzdGVyLmludGVybmFsL3VidW50dS8KCnJ1bmNtZDoKIC0gZWNobyAnQWNxdWlyZTo6TGFuZ3VhZ2VzICJub25lIjsnID4gL2V0Yy9hcHQvYXB0LmNvbmYuZC85MG5vbGFuZ3VhZ2VzCiAtIGVjaG8gJ2ZvcmNlLXVuc2FmZS1pbycgPiAvZXRjL2Rwa2cvZHBrZy5jZmcuZC9hdXRvcGtndGVzdAogLSBwcmludGYgJ1xuVEVSTT1saW51eFxuJ2h0dHBfcHJveHk9aHR0cDovL3NxdWlkLmludGVybmFsOjMxMjgnXG4naHR0cHNfcHJveHk9aHR0cDovL3NxdWlkLmludGVybmFsOjMxMjgnXG4nbm9fcHJveHk9MTI3LjAuMC4xLDEyNy4wLjEuMSxsb2dpbi51YnVudHUuY29tLGxvY2FsaG9zdCxsb2NhbGRvbWFpbixub3ZhbG9jYWwsaW50ZXJuYWwsYXJjaGl2ZS51YnVudHUuY29tLHBvcnRzLnVidW50dS5jb20sc2VjdXJpdHkudWJ1bnR1LmNvbSxkZGVicy51YnVudHUuY29tLGNoYW5nZWxvZ3MudWJ1bnR1LmNvbSxrZXlzZXJ2ZXIudWJ1bnR1LmNvbSxsYXVuY2hwYWRsaWJyYXJpYW4ubmV0LGxhdW5jaHBhZGNvbnRlbnQubmV0LGxhdW5jaHBhZC5uZXQsMTAuMjQuMC4wLzI0LGtleXN0b25lLnBzNS5jYW5vbmljYWwuY29tLG9iamVjdHN0b3JhZ2UucHJvZHN0YWNrNS5jYW5vbmljYWwuY29tLHJhZG9zZ3cucHM1LmNhbm9uaWNhbC5jb20nXG4nID4+IC9ldGMvZW52aXJvbm1lbnQKIC0gc2VkIC1pIC1yICcvXjEyNy4wLjEuMS8gcy9hdXRvcGtndGVzdC1bXiBdK1wuL2F1dG9wa2d0ZXN0XC4vJyAvZXRjL2hvc3RzCg==", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-15", "min_count": 1, "max_count": 1, "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup"}], "networks": [{"uuid": "e5b7295f-25e9-4d55-83b6-ed1971e76f4e"}]}}'
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "POST /v2.1/servers HTTP/1.1" 202 477
1018s DEBUG (session:548) RESP: [202] Connection: Keep-Alive Content-Length: 477 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:28 GMT Keep-Alive: timeout=75, max=995 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 location: https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b x-compute-request-id: req-dd7aa77d-a909-4ae7-a8ed-4dd897d6de3b x-openstack-request-id: req-dd7aa77d-a909-4ae7-a8ed-4dd897d6de3b
1018s DEBUG (session:580) RESP BODY: {"server": {"id": "2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}], "OS-DCF:diskConfig": "MANUAL", "security_groups": [{"name": "autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup"}], "adminPass": "f2mxKkVFutbx"}}
1018s DEBUG (session:936) POST call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers used request id req-dd7aa77d-a909-4ae7-a8ed-4dd897d6de3b
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b HTTP/1.1" 200 3228
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3228 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:29 GMT Keep-Alive: timeout=75, max=994 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-655eee04-605f-42eb-b3f9-8f583fc0a054 x-openstack-request-id: req-655eee04-605f-42eb-b3f9-8f583fc0a054
1018s DEBUG (session:580) RESP BODY: {"server": {"id": "2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b", "name": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2", "status": "BUILD", "tenant_id": "ad292334f14047cc96e9c50587dfe285", "user_id": "fda033b8c7ea463db1c3747f74a59d10", "metadata": {}, "hostId": "", "image": {"id": "3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-s390x", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-s390x", "hw_rng:allowed": "True"}}, "created": "2025-03-15T19:18:29Z", "updated": "2025-03-15T19:18:29Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-15", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-ccjbaqnv", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-propos", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b used request id req-655eee04-605f-42eb-b3f9-8f583fc0a054
1018s DEBUG (session:517) REQ: curl -g -i -X GET https://glance.ps6.canonical.com:9292/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61 -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://glance.ps6.canonical.com:9292 "GET /v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61 HTTP/1.1" 200 2323
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 2323 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:29 GMT Keep-Alive: timeout=75, max=999 Server: Apache/2.4.52 (Ubuntu) X-Openstack-Request-Id: req-2af0b797-9b73-4999-9380-0dbbf7cb2a9b
1018s DEBUG (session:580) RESP BODY: {"architecture": "s390x", "base_image_ref": "37828cef-4e21-48ba-b7d5-63f9eea03051", "boot_roles": "load-balancer_member,reader,member", "content_id": "auto.sync", "hw_cdrom_bus": "scsi", "hw_disk_bus": "virtio", "hw_input_bus": "usb", "hw_machine_type": "s390-ccw-virtio", "hw_pointer_model": "usbtablet", "hw_vif_model": "virtio", "image_location": "snapshot", "image_state": "available", "image_type": "snapshot", "instance_uuid": "28febb37-f1cc-40ec-9eae-a91047fbd733", "item_name": "disk1.img", "os_distro": "ubuntu", "os_version": "25.04", "owner_id": "ad292334f14047cc96e9c50587dfe285", "owner_project_name": "prod-proposed-migration-s390x_project", "owner_user_name": "prod-proposed-migration-s390x", "product_name": "com.ubuntu.cloud.daily:server:25.04:s390x", "simplestreams_metadata": "{\"aliases\": \"25.04,p,plucky,devel\", \"arch\": \"s390x\", \"ftype\": \"disk1.img\", \"label\": \"daily\", \"md5\": \"e18cf68b0057508b4f373becf7e386ce\", \"os\": \"ubuntu\", \"pubname\": \"ubuntu-plucky-daily-s390x-server-20250113\", \"release\": \"plucky\", \"release_codename\": \"Pluck", "source_content_id": "com.ubuntu.cloud:daily:download", "user_id": "fda033b8c7ea463db1c3747f74a59d10", "version_name": "20250113", "name": "adt/ubuntu-plucky-s390x-server-20250315.img", "disk_format": "qcow2", "container_format": "bare", "visibility": "private", "size": 2197159936, "virtual_size": 21474836480, "status": "active", "checksum": "64f971a37def88e27ed58c6288b9ddf7", "protected": false, "min_ram": 0, "min_disk": 20, "owner": "ad292334f14047cc96e9c50587dfe285", "os_hidden": false, "os_hash_algo": "sha512", "os_hash_value": "549be9d987209a5e865444b0d89bb920e3f50ccbd0557944305c0e7041419dd26612381ad0c6b243408f88ed6ad7184b19d2ef2fb86be1d041eae051edef0f39", "id": "3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "created_at": "2025-03-15T01:51:56Z", "updated_at": "2025-03-15T01:52:20Z", "locations": [{"url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/3d3557fa-fd0f-4bba-9b89-8d5964e09f61/snap", "metadata": {"store": "ceph"}}], "direct_url": "rbd://eea9d068-c18c-11ed-8dc0-013aacb71b80/glance/3d3557fa-fd0f-4bba-9b89-8d5964e09f61/snap", "tags": [], "self": "/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "file": "/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61/file", "schema": "/v2/schemas/image", "stores": "ceph"}
1018s DEBUG (session:936) GET call to image for https://glance.ps6.canonical.com:9292/v2/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61 used request id req-2af0b797-9b73-4999-9380-0dbbf7cb2a9b
1018s +--------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+
1018s | Property                             | Value                                                                                                                           |
1018s +--------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+
1018s | OS-DCF:diskConfig                    | MANUAL                                                                                                                          |
1018s | OS-EXT-AZ:availability_zone          |                                                                                                                                 |
1018s | OS-EXT-SRV-ATTR:host                 | -                                                                                                                               |
1018s | OS-EXT-SRV-ATTR:hostname             | adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-propos                                                                 |
1018s | OS-EXT-SRV-ATTR:hypervisor_hostname  | -                                                                                                                               |
1018s | OS-EXT-SRV-ATTR:instance_name        |                                                                                                                                 |
1018s | OS-EXT-SRV-ATTR:kernel_id            |                                                                                                                                 |
1018s | OS-EXT-SRV-ATTR:launch_index         | 0                                                                                                                               |
1018s | OS-EXT-SRV-ATTR:ramdisk_id           |                                                                                                                                 |
1018s | OS-EXT-SRV-ATTR:reservation_id       | r-ccjbaqnv                                                                                                                      |
1018s | OS-EXT-SRV-ATTR:root_device_name     | -                                                                                                                               |
1018s | OS-EXT-STS:power_state               | 0                                                                                                                               |
1018s | OS-EXT-STS:task_state                | scheduling                                                                                                                      |
1018s | OS-EXT-STS:vm_state                  | building                                                                                                                        |
1018s | OS-SRV-USG:launched_at               | -                                                                                                                               |
1018s | OS-SRV-USG:terminated_at             | -                                                                                                                               |
1018s | accessIPv4                           |                                                                                                                                 |
1018s | accessIPv6                           |                                                                                                                                 |
1018s | adminPass                            | f2mxKkVFutbx                                                                                                                    |
1018s | config_drive                         |                                                                                                                                 |
1018s | created                              | 2025-03-15T19:18:29Z                                                                                                            |
1018s | description                          | -                                                                                                                               |
1018s | flavor:disk                          | 20                                                                                                                              |
1018s | flavor:ephemeral                     | 0                                                                                                                               |
1018s | flavor:extra_specs                   | {"aggregate_instance_extra_specs:commit": "builder-s390x", "hw_rng:allowed": "True"}                                            |
1018s | flavor:original_name                 | autopkgtest-s390x                                                                                                               |
1018s | flavor:ram                           | 4096                                                                                                                            |
1018s | flavor:swap                          | 0                                                                                                                               |
1018s | flavor:vcpus                         | 2                                                                                                                               |
1018s | hostId                               |                                                                                                                                 |
1018s | id                                   | 2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b                                                                                            |
1018s | image                                | adt/ubuntu-plucky-s390x-server-20250315.img (3d3557fa-fd0f-4bba-9b89-8d5964e09f61)                                              |
1018s | key_name                             | testbed-juju-7f2275-prod-proposed-migration-environment-15                                                                      |
1018s | locked                               | False                                                                                                                           |
1018s | locked_reason                        | -                                                                                                                               |
1018s | metadata                             | {}                                                                                                                              |
1018s | name                                 | adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2 |
1018s | os-extended-volumes:volumes_attached | []                                                                                                                              |
1018s | progress                             | 0                                                                                                                               |
1018s | security_groups                      | autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup                                          |
1018s | server_groups                        | []                                                                                                                              |
1018s | status                               | BUILD                                                                                                                           |
1018s | tags                                 | []                                                                                                                              |
1018s | tenant_id                            | ad292334f14047cc96e9c50587dfe285                                                                                                |
1018s | trusted_image_certificates           | -                                                                                                                               |
1018s | updated                              | 2025-03-15T19:18:29Z                                                                                                            |
1018s | user_id                              | fda033b8c7ea463db1c3747f74a59d10                                                                                                |
1018s +--------------------------------------+---------------------------------------------------------------------------------------------------------------------------------+DEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b HTTP/1.1" 200 3228
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3228 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:29 GMT Keep-Alive: timeout=75, max=993 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-7cc88d3a-b9bf-4077-acb5-9ae418b91323 x-openstack-request-id: req-7cc88d3a-b9bf-4077-acb5-9ae418b91323
1018s DEBUG (session:580) RESP BODY: {"server": {"id": "2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b", "name": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2", "status": "BUILD", "tenant_id": "ad292334f14047cc96e9c50587dfe285", "user_id": "fda033b8c7ea463db1c3747f74a59d10", "metadata": {}, "hostId": "", "image": {"id": "3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-s390x", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-s390x", "hw_rng:allowed": "True"}}, "created": "2025-03-15T19:18:29Z", "updated": "2025-03-15T19:18:29Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}], "OS-DCF:diskConfig": "MANUAL", "progress": 0, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-15", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-ccjbaqnv", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-propos", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": "scheduling", "OS-EXT-STS:vm_state": "building", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b used request id req-7cc88d3a-b9bf-4077-acb5-9ae418b91323
1018s 
1018s 
1018s 
Server building... 0% completeDEBUG (session:517) REQ: curl -g -i -X GET https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b -H "Accept: application/json" -H "OpenStack-API-Version: compute 2.87" -H "User-Agent: python-novaclient" -H "X-Auth-Token: {SHA256}4b0d90a87759100a69c5aa64973e1d7eccc64eaaec0bd02d146316291b8d3c4b" -H "X-OpenStack-Nova-API-Version: 2.87"
1018s DEBUG (connectionpool:429) https://nova.ps6.canonical.com:8774 "GET /v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b HTTP/1.1" 200 3355
1018s DEBUG (session:548) RESP: [200] Connection: Keep-Alive Content-Length: 3355 Content-Type: application/json Date: Sat, 15 Mar 2025 19:18:34 GMT Keep-Alive: timeout=75, max=992 OpenStack-API-Version: compute 2.87 Server: Apache/2.4.52 (Ubuntu) Vary: OpenStack-API-Version,X-OpenStack-Nova-API-Version X-OpenStack-Nova-API-Version: 2.87 x-compute-request-id: req-1f0a41e8-d094-4d3d-9cca-3159bb74d20b x-openstack-request-id: req-1f0a41e8-d094-4d3d-9cca-3159bb74d20b
1018s DEBUG (session:580) RESP BODY: {"server": {"id": "2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b", "name": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2", "status": "ERROR", "tenant_id": "ad292334f14047cc96e9c50587dfe285", "user_id": "fda033b8c7ea463db1c3747f74a59d10", "metadata": {}, "hostId": "", "image": {"id": "3d3557fa-fd0f-4bba-9b89-8d5964e09f61", "links": [{"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/images/3d3557fa-fd0f-4bba-9b89-8d5964e09f61"}]}, "flavor": {"vcpus": 2, "ram": 4096, "disk": 20, "ephemeral": 0, "swap": 0, "original_name": "autopkgtest-s390x", "extra_specs": {"aggregate_instance_extra_specs:commit": "builder-s390x", "hw_rng:allowed": "True"}}, "created": "2025-03-15T19:18:28Z", "updated": "2025-03-15T19:18:29Z", "addresses": {}, "accessIPv4": "", "accessIPv6": "", "links": [{"rel": "self", "href": "https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}, {"rel": "bookmark", "href": "https://nova.ps6.canonical.com:8774/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b"}], "OS-DCF:diskConfig": "MANUAL", "fault": {"code": 500, "created": "2025-03-15T19:18:30Z", "message": "No valid host was found. There are not enough hosts available."}, "OS-EXT-AZ:availability_zone": "", "config_drive": "", "key_name": "testbed-juju-7f2275-prod-proposed-migration-environment-15", "OS-SRV-USG:launched_at": null, "OS-SRV-USG:terminated_at": null, "OS-EXT-SRV-ATTR:host": null, "OS-EXT-SRV-ATTR:instance_name": "instance-000d8747", "OS-EXT-SRV-ATTR:hypervisor_hostname": null, "OS-EXT-SRV-ATTR:reservation_id": "r-ccjbaqnv", "OS-EXT-SRV-ATTR:launch_index": 0, "OS-EXT-SRV-ATTR:hostname": "adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-propos", "OS-EXT-SRV-ATTR:kernel_id": "", "OS-EXT-SRV-ATTR:ramdisk_id": "", "OS-EXT-SRV-ATTR:root_device_name": null, "OS-EXT-SRV-ATTR:user_data": "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", "OS-EXT-STS:task_state": null, "OS-EXT-STS:vm_state": "error", "OS-EXT-STS:power_state": 0, "os-extended-volumes:volumes_attached": [], "locked": false, "locked_reason": null, "description": null, "tags": [], "trusted_image_certificates": null, "server_groups": []}}
1018s DEBUG (session:936) GET call to compute for https://nova.ps6.canonical.com:8774/v2.1/servers/2f15c7d7-9d30-4dc2-b9f7-871d65ef1d0b used request id req-1f0a41e8-d094-4d3d-9cca-3159bb74d20b
1018s DEBUG (shell:822) <Server: adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2>
1018s Traceback (most recent call last):
1018s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 820, in main
1018s     OpenStackComputeShell().main(argv)
1018s   File "/usr/lib/python3/dist-packages/novaclient/shell.py", line 742, in main
1018s     args.func(self.cs, args)
1018s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 980, in do_boot
1018s     _poll_for_status(cs.servers.get, server.id, 'building', ['active'])
1018s   File "/usr/lib/python3/dist-packages/novaclient/v2/shell.py", line 1019, in _poll_for_status
1018s     raise exceptions.ResourceInErrorState(obj)
1018s novaclient.exceptions.ResourceInErrorState: <Server: adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2>
1018s ERROR (ResourceInErrorState): <Server: adt-plucky-s390x-stacks-20250315-191719-juju-7f2275-prod-proposed-migration-environment-15-b36c42d8-b1ab-4638-b51a-30046339a4c2>
1018s 
1018s Error building server
1021s autopkgtest [19:34:20]: testbed dpkg architecture: s390x
1021s autopkgtest [19:34:20]: testbed apt version: 2.9.33
1021s autopkgtest [19:34:20]: @@@@@@@@@@@@@@@@@@@@ test bed setup
1022s autopkgtest [19:34:21]: testbed release detected to be: None
1022s autopkgtest [19:34:21]: updating testbed package index (apt update)
1023s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
1023s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
1023s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
1023s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
1023s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [369 kB]
1023s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [45.1 kB]
1023s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [14.5 kB]
1023s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [77.3 kB]
1023s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
1023s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
1023s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [314 kB]
1023s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.3 kB]
1023s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3532 B]
1023s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
1024s Fetched 965 kB in 1s (1151 kB/s)
1024s Reading package lists...
1025s + lsb_release --codename --short
1025s + RELEASE=plucky
1025s + cat
1025s + [ plucky != trusty ]
1025s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
1025s Reading package lists...
1025s Building dependency tree...
1025s Reading state information...
1025s Calculating upgrade...
1025s Calculating upgrade...
1025s The following packages were automatically installed and are no longer required:
1025s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
1025s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
1025s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
1025s   linux-tools-6.11.0-8-generic
1025s Use 'sudo apt autoremove' to remove them.
1025s The following packages will be upgraded:
1025s   pinentry-curses python3-jinja2 strace
1025s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1025s Need to get 652 kB of archives.
1025s After this operation, 27.6 kB of additional disk space will be used.
1025s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
1026s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
1026s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
1026s Fetched 652 kB in 1s (736 kB/s)
1026s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
1026s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
1026s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
1026s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
1026s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
1026s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
1026s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
1027s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
1027s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
1027s Setting up strace (6.13+ds-1ubuntu1) ...
1027s Processing triggers for man-db (2.13.0-1) ...
1027s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
1027s + /usr/lib/apt/apt-helper analyze-pattern ?true
1027s + uname -r
1027s + sed s/\./\\./g
1027s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
1027s + apt list ?obsolete
1027s + tail+ cut -d/ -f1
1027s  -n+2
1027s + grep -v ^linux-.*6\.14\.0-10-generic.*
1027s + obsolete_pkgs=linux-headers-6.11.0-8-generic
1027s linux-headers-6.11.0-8
1027s linux-modules-6.11.0-8-generic
1027s linux-tools-6.11.0-8-generic
1027s linux-tools-6.11.0-8
1027s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
1027s Reading package lists...
1027s Building dependency tree...
1027s Reading state information...
1028s Solving dependencies...
1028s The following packages will be REMOVED:
1028s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
1028s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
1028s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
1028s   linux-tools-6.11.0-8-generic*
1028s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
1028s After this operation, 167 MB disk space will be freed.
1028s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
1028s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
1028s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
1028s Removing libpython3.12t64:s390x (3.12.9-1) ...
1028s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
1028s Removing libnsl2:s390x (1.3.0-3build3) ...
1028s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
1028s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
1028s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
1029s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
1029s Processing triggers for libc-bin (2.41-1ubuntu1) ...
1029s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
1029s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
1029s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
1029s + grep -q trusty /etc/lsb-release
1029s + [ ! -d /usr/share/doc/unattended-upgrades ]
1029s + [ ! -d /usr/share/doc/lxd ]
1029s + [ ! -d /usr/share/doc/lxd-client ]
1029s + [ ! -d /usr/share/doc/snapd ]
1029s + type iptables
1029s + cat
1029s + chmod 755 /etc/rc.local
1029s + . /etc/rc.local
1029s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
1029s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
1029s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
1029s + uname -m
1029s + [ s390x = ppc64le ]
1029s + [ -d /run/systemd/system ]
1029s + systemd-detect-virt --quiet --vm
1029s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
1029s + cat
1029s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
1029s + echo COMPRESS=lz4
1029s autopkgtest [19:34:28]: upgrading testbed (apt dist-upgrade and autopurge)
1030s Reading package lists...
1030s Building dependency tree...
1030s Reading state information...
1030s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
1030s Starting 2 pkgProblemResolver with broken count: 0
1030s Done
1030s Entering ResolveByKeep
1030s 
1030s Calculating upgrade...
1030s The following packages will be upgraded:
1030s   libc-bin libc-dev-bin libc6 libc6-dev locales
1030s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1030s Need to get 9512 kB of archives.
1030s After this operation, 8192 B of additional disk space will be used.
1030s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
1032s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
1032s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
1034s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
1034s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
1036s Preconfiguring packages ...
1036s Fetched 9512 kB in 6s (1636 kB/s)
1036s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1036s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
1036s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1037s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
1037s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1037s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
1037s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1037s Setting up libc6:s390x (2.41-1ubuntu2) ...
1037s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1037s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
1037s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1037s Setting up libc-bin (2.41-1ubuntu2) ...
1037s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
1037s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
1037s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
1037s Setting up locales (2.41-1ubuntu2) ...
1037s Generating locales (this might take a while)...
1038s   en_US.UTF-8... done
1038s Generation complete.
1038s Setting up libc-dev-bin (2.41-1ubuntu2) ...
1038s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
1038s Processing triggers for man-db (2.13.0-1) ...
1039s Processing triggers for systemd (257.3-1ubuntu3) ...
1040s Reading package lists...
1040s Building dependency tree...
1040s Reading state information...
1040s Starting pkgProblemResolver with broken count: 0
1040s Starting 2 pkgProblemResolver with broken count: 0
1040s Done
1040s Solving dependencies...
1040s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
1040s autopkgtest [19:34:39]: rebooting testbed after setup commands that affected boot
1060s autopkgtest [19:34:59]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
1064s autopkgtest [19:35:03]: @@@@@@@@@@@@@@@@@@@@ apt-source stacks
1065s Get:1 http://ftpmaster.internal/ubuntu plucky/universe stacks 2.68+dfsg-2 (dsc) [2050 B]
1065s Get:2 http://ftpmaster.internal/ubuntu plucky/universe stacks 2.68+dfsg-2 (tar) [371 kB]
1065s Get:3 http://ftpmaster.internal/ubuntu plucky/universe stacks 2.68+dfsg-2 (diff) [12.5 kB]
1066s gpgv: Signature made Sun Feb 16 10:21:57 2025 UTC
1066s gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
1066s gpgv:                issuer "emollier@debian.org"
1066s gpgv: Can't check signature: No public key
1066s dpkg-source: warning: cannot verify inline signature for ./stacks_2.68+dfsg-2.dsc: no acceptable signature found
1066s autopkgtest [19:35:05]: testing package stacks version 2.68+dfsg-2
1066s autopkgtest [19:35:05]: build not needed
1067s autopkgtest [19:35:06]: test run-unit-test: preparing testbed
1067s Reading package lists...
1067s Building dependency tree...
1067s Reading state information...
1067s Starting pkgProblemResolver with broken count: 0
1067s Starting 2 pkgProblemResolver with broken count: 0
1067s Done
1068s The following NEW packages will be installed:
1068s   libdbi-perl libdeflate0 libgomp1 libhts3t64 libhtscodecs2 samtools stacks
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1072s autopkgtest [19:35:11]: test run-unit-test: [-----------------------
1072s Stacks - a pipeline for building loci from short-read sequences
1072s          v2.68+dfsg http://creskolab.uoregon.edu/stacks/
1072s 
1072s This is the Stacks wrapper script for Debian. Usage:
1072s     stacks <progname> <args...>
1072s 
1072s Programs available are:
1072s clone_filter			ref_map
1072s cstacks				sstacks
1072s denovo_map			stacks-dist-extract
1072s gstacks				stacks-gdb
1072s kmer_filter			stacks-integrate-alignments
1072s phasedstacks			stacks-private-alleles
1072s populations			stacks-samtools-tview
1072s process_radtags			tsv2bam
1072s process_shortreads		ustacks
1072s 
1072s Or else add /usr/libexec/stacks/bin to your $PATH to invoke the commands directly.
1072s 
1072s clone_filter 2.68
1072s clone_filter [-f in_file | -p in_dir [-P] [-I] | -1 pair_1 -2 pair_2] -o out_dir [-i type] [-y type] [-D] [-h]
1072s   f: path to the input file if processing single-end sequences.
1072s   p: path to a directory of files.
1072s   P: files contained within directory specified by '-p' are paired.
1072s   1: first input file in a set of paired-end sequences.
1072s   2: second input file in a set of paired-end sequences.
1072s   i: input file type, either 'bustard', 'fastq', 'fasta', 'gzfasta', or 'gzfastq' (default 'fastq').
1072s   o: path to output the processed files.
1072s   y: output type, either 'fastq', 'fasta', 'gzfasta', or 'gzfastq' (default same as input type).
1072s   D: capture discarded reads to a file.
1072s   h: display this help message.
1072s   --oligo-len-1 len: length of the single-end oligo sequence in data set.
1072s   --oligo-len-2 len: length of the paired-end oligo sequence in data set.
1072s   --retain-oligo: do not trim off the random oligo sequence (if oligo is inline).
1072s 
1072s   Oligo sequence options:
1072s     --inline-null:   random oligo is inline with sequence, occurs only on single-end read (default).
1072s     --null-inline:   random oligo is inline with sequence, occurs only on the paired-end read.
1072s     --null-index:    random oligo is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).
1072s     --index-null:    random oligo is provded in FASTQ header (Illumina i5 or i7 read).
1072s     --inline-inline: random oligo is inline with sequence, occurs on single and paired-end read.
1072s     --index-index:   random oligo is provded in FASTQ header (Illumina i5 and i7 read).
1072s     --inline-index:  random oligo is inline with sequence on single-end read and second oligo occurs in FASTQ header.
1072s     --index-inline:  random oligo occurs in FASTQ header (Illumina i5 or i7 read) and is inline with sequence on single-end read (if single read data) or paired-end read (if paired data).
1072s 
1072s cstacks 2.68
1072s cstacks -P in_dir -M popmap [-n num_mismatches] [-t num_threads]
1072s cstacks -s sample1_path [-s sample2_path ...] -o path [-n num_mismatches] [-t num_threads]
1072s 
1072s   -P,--in-path: path to the directory containing Stacks files.
1072s   -M,--popmap: path to a population map file.
1072s   -n: number of mismatches allowed between sample loci when build the catalog (default 1; suggested: set to ustacks -M).
1072s   -t,--threads: enable parallel execution with num_threads threads.
1072s   -s: sample prefix from which to load loci into the catalog.
1072s   -o,--outpath: output path to write results.
1072s   -c,--catalog <path>: add to an existing catalog.
1072s 
1072s Gapped assembly options:
1072s   --max-gaps: number of gaps allowed between stacks before merging (default: 2).
1072s   --min-aln-len: minimum length of aligned sequence in a gapped alignment (default: 0.80).
1072s   --disable-gapped: disable gapped alignments between stacks (default: use gapped alignments).
1072s 
1072s Advanced options:
1072s   --k-len <len>: specify k-mer size for matching between between catalog loci (automatically calculated by default).
1072s   --report-mmatches: report query loci that match more than one catalog locus.
1072s denovo_map.pl 2.68
1072s denovo_map.pl --samples dir --popmap path --out-path dir [--paired [--rm-pcr-duplicates]] (assembly options) (filtering options) [-X prog:"opts" ...]
1072s 
1072s   Input/Output files:
1072s     --samples: path to the directory containing the reads files for each sample.
1072s     --popmap: path to a population map file (format is "<name> TAB <pop>", one sample per line).
1072s     -o,--out-path: path to an output directory.
1072s 
1072s   General options:
1072s     -X: additional options for specific pipeline components, e.g. -X "populations: --min-maf 0.05".
1072s     -T, --threads: the number of threads/CPUs to use (default: 1).
1072s     --dry-run: dry run. Do not actually execute anything, just print the commands that would be executed.
1072s     --resume: resume executing the pipeline from a previous run.
1072s 
1072s   Stack assembly options:
1072s     -M: number of mismatches allowed between stacks within individuals (for ustacks).
1072s     -n: number of mismatches allowed between stacks between individuals (for cstacks; default: set to ustacks -M).
1072s 
1072s   SNP model options:
1072s     --var-alpha: significance level at which to call variant sites (for gstacks; default: 0.05).
1072s     --gt-alpha: significance level at which to call genotypes (for gstacks; default: 0.05).
1072s 
1072s   Paired-end options:
1072s     --paired: after assembling RAD loci, assemble mini-contigs with paired-end reads.
1072s     --rm-pcr-duplicates: remove all but one set of read pairs of the same sample that have
1072s                          the same insert length.
1072s 
1072s   Population filtering options:
1072s     -r,--min-samples-per-pop: minimum percentage of individuals in a population required to process a locus for that population (for populations; default: 0)
1072s     -p,--min-populations: minimum number of populations a locus must be present in to process a locus (for populations; default: 1)
1072s 
1072s   For large datasets:
1072s     --catalog-popmap: path to a second population map file containing a subset of samples for use only in building the catalog.
1072s 
1072s   Miscellaneous:
1072s     --time-components (for benchmarking)
1072s gstacks 2.68
1072s 
1072s De novo mode:
1072s   gstacks -P stacks_dir -M popmap
1072s 
1072s   -P: input directory containing '*.matches.bam' files created by the
1072s       de novo Stacks pipeline, ustacks-cstacks-sstacks-tsv2bam
1072s 
1072s Reference-based mode:
1072s   gstacks -I bam_dir -M popmap [-S suffix] -O out_dir
1072s   gstacks -B bam_file [-B ...] -O out_dir
1072s 
1072s   -I: input directory containing BAM files
1072s   -S: with -I/-M, suffix to use to build BAM file names: by default this
1072s       is just '.bam', i.e. the program expects 'SAMPLE_NAME.bam'
1072s   -B: input BAM file(s)
1072s 
1072s   The input BAM file(s) must be sorted by coordinate.
1072s   With -B, records must be assigned to samples using BAM "reads groups"
1072s   (gstacks uses the ID/identifier and SM/sample name fields). Read groups
1072s   must be consistent if repeated different files. Note that with -I, read
1072s   groups are unneeded and ignored.
1072s 
1072s For both modes:
1072s   -M: path to a population map giving the list of samples
1072s   -O: output directory (default: none with -B; with -P same as the input
1072s       directory)
1072s   -t,--threads: number of threads to use (default: 1)
1072s 
1072s SNP Model options:
1072s   --model: model to use to call variants and genotypes; one of
1072s            marukilow (default), marukihigh, or snp
1072s   --var-alpha: alpha threshold for discovering SNPs (default: 0.01 for marukilow)
1072s   --gt-alpha: alpha threshold for calling genotypes (default: 0.05)
1072s 
1072s Paired-end options:
1072s   --rm-pcr-duplicates: remove all but one set ofread pairs of the same sample that 
1072s                        have the same insert length (implies --rm-unpaired-reads)
1072s   --rm-unpaired-reads: discard unpaired reads
1072s   --ignore-pe-reads: ignore paired-end reads even if present in the input
1072s   --unpaired: ignore read pairing (only for paired-end GBS; treat READ2's as if they were READ1's)
1072s 
1072s Advanced options:
1072s   (De novo mode)
1072s   --kmer-length: kmer length for the de Bruijn graph (default: 31, max. 31)
1072s   --max-debruijn-reads: maximum number of reads to use in the de Bruijn graph (default: 1000)
1072s   --min-kmer-cov: minimum coverage to consider a kmer (default: 2)
1072s   --write-alignments: save read alignments (heavy BAM files)
1072s 
1072s   (Reference-based mode)
1072s   --methyl-status: assumes a methylation-aware molecular protocol used; calls methylated bases.
1072s   --min-mapq: minimum PHRED-scaled mapping quality to consider a read (default: 10)
1072s   --max-clipped: maximum soft-clipping level, in fraction of read length (default: 0.20)
1072s   --max-insert-len: maximum allowed sequencing insert length (default: 1000)
1072s 
1072s   --details: write a heavier output
1072s   --phasing-cooccurrences-thr-range: range of edge coverage thresholds to
1072s         iterate over when building the graph of allele cooccurrences for
1072s         SNP phasing (default: 1,2)
1072s   --phasing-dont-prune-hets: don't try to ignore dubious heterozygote
1072s         genotypes during phasing
1072s 
1072s kmer_filter 2.68
1072s kmer_filter [-f in_file_1 [-f in_file_2...] | -p in_dir] [-1 pair_1 -2 pair_2 [-1 pair_1...]] -o out_dir [-i type] [-y type] [-D] [-h]
1072s   f: path to the input file if processing single-end seqeunces.
1072s   i: input file type, either 'bustard' for the Illumina BUSTARD output files, 'fasta', 'fastq', 'gzfasta', or 'gzfastq' (default 'fastq').
1072s   p: path to a directory of files (for single-end files only).
1072s   1: specify the first in a pair of files to be processed together.
1072s   2: specify the second in a pair of files to be processed together.
1072s   o: path to output the processed files.
1072s   y: output type, either 'fastq' or 'fasta' (default fastq).
1072s   D: capture discarded reads to a file.
1072s   h: display this help message.
1072s 
1072s   Filtering options:
1072s     --rare: turn on filtering based on rare k-mers.
1072s     --abundant: turn on filtering based on abundant k-mers.
1072s     --k-len <len>: specify k-mer size (default 15).
1072s 
1072s   Advanced filtering options:
1072s     --max-k-freq <value>: specify the number of times a kmer must occur to be considered abundant (default 20,000).
1072s     --min-lim <value>: specify number of rare kmers occurring in a row required to discard a read (default 80% of the k-mer length).
1072s     --max-lim <value>: specify number of abundant kmers required to discard a read (default 80% of the k-mers in a read).
1072s 
1072s   Normalize data:
1072s     --normalize <depth>: normalize read depth according to k-mer coverage.
1072s 
1072s   Characterizing K-mers:
1072s     --write-k-freq: write kmers along with their frequency of occurrence and exit.
1072s     --k-dist: print k-mer frequency distribution and exit.
1072s 
1072s   Advanced input options:
1072s     --read-k-freq <path>: read a set of kmers along with their frequencies of occurrence instead of reading raw input files.
1072s 
1072s phasedstacks 2.68
1072s phasedstacks -b id -S path -P path -t file_type [-p threads] [-M popmap] [-v] [-h]
1072s   b: Stacks batch ID.
1072s   P: path to the phased output files.
1072s   S: path to the Stacks output files.
1072s   t: input file type. Supported types: fastphase, and beagle.
1072s   p: number of processes to run in parallel sections of code.
1072s   M: path to the population map, a tab separated file describing which individuals belong in which population.
1072s   v: print program version.
1072s   h: display this help message.
1072s   --haplotypes: data were phased as RAD locus haplotypes.
1072s   --dprime-bin-size: size of buckets for binning SNPs at a particular distance to calculate the mean D' value.
1072s   --dprime-threshold <val>: if D' values fall above <val>, set the D' to 1, otherwise set D' to 0.
1072s 
1072s   Filtering options:
1072s   --skip-zeros: do not include D' values of zero in the D' output.
1072s   --minor-allele-freq: specify a minimum minor allele frequency required to process a nucleotide site (0 < a < 0.5).
1072s   --min-inform-pairs: when building D' haplotype blocks, the minimum number of informative D' measures to combine two blocks (default 0.9).
1072s 
1072s populations 2.68
1072s Usage:
1072s populations -P dir [-O dir] [-M popmap] (filters) [--fstats] [-k [--sigma=150000] [--bootstrap [-N 100]]] (output formats)
1072s populations -V vcf -O dir [-M popmap] (filters) [--fstats] [-k [--sigma=150000] [--bootstrap [-N 100]]] (output formats)
1072s 
1072s   -P,--in-path: path to a directory containing Stacks output files.
1072s   -V,--in-vcf: path to a standalone input VCF file.
1072s   -O,--out-path: path to a directory where to write the output files. (Required by -V; otherwise defaults to value of -P.)
1072s   -M,--popmap: path to a population map. (Format is 'SAMPLE1 \t POP1 \n SAMPLE2 ...'.)
1072s   -t,--threads: number of threads to run in parallel sections of code.
1072s   --batch-size [int]: the number of loci to process in a batch (default: 10,000 in de novo mode; in reference mode, one chromosome
1072s                       per batch). Increase to speed analysis, uses more memory, decrease to save memory).
1072s 
1072s Data Filtering:
1072s   -p,--min-populations [int]: minimum number of populations a locus must be present in to process a locus.
1072s   -r,--min-samples-per-pop [float]: minimum percentage of individuals in a population required to process a locus for that population.
1072s   -R,--min-samples-overall [float]: minimum percentage of individuals across populations required to process a locus.
1072s   -H,--filter-haplotype-wise: apply the above filters haplotype wise
1072s                               (unshared SNPs will be pruned to reduce haplotype-wise missing data).
1072s   --min-maf [float]: specify a minimum minor allele frequency required to process a SNP (0 < min_maf < 0.5; applied to the metapopulation).
1072s   --min-mac [int]: specify a minimum minor allele count required to process a SNP (applied to the metapopulation).
1072s   --max-obs-het [float]: specify a maximum observed heterozygosity required to process a SNP (applied ot the metapopulation).
1072s   --min-gt-depth [int]: specify a minimum number of reads to include a called SNP (otherwise marked as missing data).
1072s 
1072s   --write-single-snp: restrict data analysis to only the first SNP per locus (implies --no-haps).
1072s   --write-random-snp: restrict data analysis to one random SNP per locus (implies --no-haps).
1072s   -B,--blacklist: path to a file containing Blacklisted markers to be excluded from the export.
1072s   -W,--whitelist: path to a file containing Whitelisted markers to include in the export.
1072s 
1072s Locus stats:
1072s   --hwe: calculate divergence from Hardy-Weinberg equilibrium for each locus.
1072s 
1072s Fstats:
1072s   --fstats: enable SNP and haplotype-based F statistics.
1072s   --fst-correction: specify a p-value correction to be applied to Fst values based on a Fisher's exact test. Default: off.
1072s   --p-value-cutoff [float]: maximum p-value to keep an Fst measurement. Default: 0.05.
1072s 
1072s Kernel-smoothing algorithm:
1072s   -k,--smooth: enable kernel-smoothed Pi, Fis, Fst, Fst', and Phi_st calculations.
1072s   --smooth-fstats: enable kernel-smoothed Fst, Fst', and Phi_st calculations.
1072s   --smooth-popstats: enable kernel-smoothed Pi and Fis calculations.
1072s     (Note: turning on smoothing implies --ordered-export.)
1072s   --sigma [int]: standard deviation of the kernel smoothing weight distribution. Sliding window size is defined as 3 x sigma; (default sigma = 150kbp).
1072s   --bootstrap-archive: archive statistical values for use in bootstrap resampling in a subsequent run, statistics must be enabled to be archived.
1072s   --bootstrap: turn on boostrap resampling for all kernel-smoothed statistics.
1072s   -N,--bootstrap-reps [int]: number of bootstrap resamplings to calculate (default 100).
1072s   --bootstrap-pifis: turn on boostrap resampling for smoothed SNP-based Pi and Fis calculations.
1072s   --bootstrap-fst: turn on boostrap resampling for smoothed Fst calculations based on pairwise population comparison of SNPs.
1072s   --bootstrap-div: turn on boostrap resampling for smoothed haplotype diveristy and gene diversity calculations based on haplotypes.
1072s   --bootstrap-phist: turn on boostrap resampling for smoothed Phi_st calculations based on haplotypes.
1072s   --bootstrap-wl [path]: only bootstrap loci contained in this whitelist.
1072s 
1072s File output options:
1072s   --ordered-export: if data is reference aligned, exports will be ordered; only a single representative of each overlapping site.
1072s   --fasta-loci: output locus consensus sequences in FASTA format.
1072s   --fasta-samples: output the sequences of the two haplotypes of each (diploid) sample, for each locus, in FASTA format.
1072s   --vcf: output SNPs and haplotypes in Variant Call Format (VCF).
1072s   --vcf-all: output all sites in Variant Call Format (VCF).
1072s   --genepop: output SNPs and haplotypes in GenePop format.
1072s   --structure: output results in Structure format.
1072s   --radpainter: output results in fineRADstructure/RADpainter format.
1072s   --plink: output genotypes in PLINK format.
1072s   --hzar: output genotypes in Hybrid Zone Analysis using R (HZAR) format.
1072s   --phylip: output nucleotides that are fixed-within, and variant among populations in Phylip format for phylogenetic tree construction.
1072s   --phylip-var: include variable sites in the phylip output encoded using IUPAC notation.
1072s   --phylip-var-all: include all sequence as well as variable sites in the phylip output encoded using IUPAC notation.
1072s   --treemix: output SNPs in a format useable for the TreeMix program (Pickrell and Pritchard).
1072s   --gtf: output locus positions in a GTF annotation file.
1072s   --no-hap-exports: omit haplotype outputs.
1072s   --fasta-samples-raw: output all haplotypes observed in each sample, for each locus, in FASTA format.
1072s 
1072s Genetic map output options (population map must specify a genetic cross):
1072s   --map-type: genetic map type to write. 'CP', 'DH', 'F2', and 'BC1' are the currently supported map types.
1072s   --map-format: mapping program format to write, 'joinmap', 'onemap', and 'rqtl' are currently supported.
1072s 
1072s Additional options:
1072s   -h,--help: display this help message.
1072s   -v,--version: print program version.
1072s   --verbose: turn on additional logging.
1072s   --log-fst-comp: log components of Fst/Phi_st calculations to a file.
1072s process_radtags 2.68
1072s process_radtags -p in_dir [-P] [-b barcode_file] -o out_dir -e enz [--threads num] [-c] [-q] [-r] [-t len]
1072s process_radtags -f in_file [-b barcode_file] -o out_dir -e enz [--threads num] [-c] [-q] [-r] [-t len]
1072s process_radtags --in-path in_dir [--paired] [--barcodes barcode_file] --out-path out_dir --renz-1 enz [--renz-2 enz] [--threads num] [-c] [-q] [-r] [-t len]
1072s process_radtags -1 pair_1 -2 pair_2 [-b barcode_file] -o out_dir -e enz [--threads num] [-c] [-q] [-r] [-t len]
1072s 
1072s   -p,--in-path: path to a directory of files.
1072s   -P,--paired: files contained within the directory are paired.
1072s   -I,--interleaved: specify that the paired-end reads are interleaved in single files.
1072s   -b,--barcodes: path to a file containing barcodes for this run, omit to ignore any barcoding or for already demultiplexed data.
1072s   -f: path to the input file if processing single-end sequences.
1072s   -1: first input file in a set of paired-end sequences.
1072s   -2: second input file in a set of paired-end sequences.
1072s   -o,--out-path: path to output the processed files.
1072s     --basename: specify the prefix of the output files when using -f or -1/-2.
1072s 
1072s   --threads: number of threads to run.
1072s   -c,--clean: clean data, remove any read with an uncalled base ('N').
1072s   -q,--quality: discard reads with low quality (phred) scores.
1072s   -r,--rescue: rescue barcodes and RAD-Tag cut sites.
1072s   -t,--truncate: truncate final read length to this value.
1072s   -D,--discards: capture discarded reads to a file.
1072s 
1072s   Barcode options:
1072s     --inline-null:   barcode is inline with sequence, occurs only on single-end read (default).
1072s     --index-null:    barcode is provded in FASTQ header (Illumina i5 or i7 read).
1072s     --null-index:    barcode is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).
1072s     --inline-inline: barcode is inline with sequence, occurs on single and paired-end read.
1072s     --index-index:   barcode is provded in FASTQ header (Illumina i5 and i7 reads).
1072s     --inline-index:  barcode is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read).
1072s     --index-inline:  barcode occurs in FASTQ header (Illumina i5 or i7 read) and is inline with single-end sequence (for single-end data) on paired-end read (for paired-end data).
1072s 
1072s   Restriction enzyme options:
1072s     -e [enz], --renz-1 [enz]: provide the restriction enzyme used (cut site occurs on single-end read)
1072s     --renz-2 [enz]: if a double digest was used, provide the second restriction enzyme used (cut site occurs on the paired-end read).
1072s     Currently supported enzymes include:
1072s       'aciI', 'aclI', 'ageI', 'aluI', 'apaLI', 'apeKI', 'apoI', 'aseI', 
1072s       'bamHI', 'bbvCI', 'bfaI', 'bfuCI', 'bgIII', 'bsaHI', 'bspDI', 'bstYI', 
1072s       'btgI', 'cac8I', 'claI', 'csp6I', 'ddeI', 'dpnII', 'eaeI', 'ecoRI', 
1072s       'ecoRV', 'ecoT22I', 'haeII', 'haeIII', 'hhaI', 'hinP1I', 'hindIII', 'hpaII', 
1072s       'hpyCH4IV', 'kpnI', 'mluCI', 'mseI', 'mslI', 'mspI', 'ncoI', 'ndeI', 
1072s       'ngoMIV', 'nheI', 'nlaIII', 'notI', 'nsiI', 'nspI', 'pacI', 'pspXI', 
1072s       'pstI', 'pstIshi', 'rsaI', 'sacI', 'sau3AI', 'sbfI', 'sexAI', 'sgrAI', 
1072s       'speI', 'sphI', 'taqI', 'xbaI', or 'xhoI'
1072s 
1072s   Protocol-specific options:
1072s     --bestrad: library was generated using BestRAD, check for restriction enzyme on either read and potentially tranpose reads.
1072s     --methylrad: library was generated using enzymatic methyl-seq (EM-seq) or bisulphite sequencing.
1072s 
1072s   Adapter options:
1072s     --adapter-1 <sequence>: provide adaptor sequence that may occur on the single-end read for filtering.
1072s     --adapter-2 <sequence>: provide adaptor sequence that may occur on the paired-read for filtering.
1072s       --adapter-mm <mismatches>: number of mismatches allowed in the adapter sequence.
1072s 
1072s   Input/Output options:
1072s     --in-type: input file type, either 'fastq', 'gzfastq' (gzipped fastq), 'bam', or 'bustard' (default: guess, or gzfastq if unable to).
1072s     --out-type: output type, either 'fastq', 'gzfastq', 'fasta', or 'gzfasta' (default: match input type).
1072s     --retain-header: retain unmodified FASTQ headers in the output.
1072s     --merge: if no barcodes are specified, merge all input files into a single output file.
1072s 
1072s   Advanced options:
1072s     --filter-illumina: discard reads that have been marked by Illumina's chastity/purity filter as failing.
1072s     --disable-rad-check: disable checking if the RAD cut site is intact.
1072s     --force-poly-g-check: force a check for runs of poly-Gs (default: autodetect based on machine type in FASTQ header).
1072s     --disable-poly-g-check: disable checking for runs of poly-Gs (default: autodetect based on machine type in FASTQ header).
1072s     --encoding: specify how quality scores are encoded, 'phred33' (Illumina 1.8+/Sanger, default) or 'phred64' (Illumina 1.3-1.5).
1072s     --window-size: set the size of the sliding window as a fraction of the read length, between 0 and 1 (default 0.15).
1072s     --score-limit: set the phred score limit. If the average score within the sliding window drops below this value, the read is discarded (default 10).
1072s     --len-limit <limit>: specify a minimum sequence length (useful if your data has already been trimmed).
1072s     --barcode-dist-1: the number of allowed mismatches when rescuing single-end barcodes (default 1).
1072s     --barcode-dist-2: the number of allowed mismatches when rescuing paired-end barcodes (defaults to --barcode-dist-1).
1072s process_shortreads 2.68
1072s process_shortreads [-f in_file | -p in_dir [-P] [-I] | -1 pair_1 -2 pair_2] -b barcode_file -o out_dir [-i type] [-y type] [-c] [-q] [-r] [-E encoding] [-t len] [-D] [-w size] [-s lim] [-h]
1072s   f: path to the input file if processing single-end seqeunces.
1072s   i: input file type, either 'bustard' for the Illumina BUSTARD format, 'bam', 'fastq' (default), or 'gzfastq' for gzipped FASTQ.
1072s   p: path to a directory of single-end Illumina files.
1072s   1: first input file in a set of paired-end sequences.
1072s   2: second input file in a set of paired-end sequences.
1072s   P: specify that input is paired (for use with '-p').
1072s   I: specify that the paired-end reads are interleaved in single files.
1072s   o: path to output the processed files.
1072s   y: output type, either 'fastq' or 'fasta' (default gzfastq).
1072s   b: a list of barcodes for this run.
1072s   c: clean data, remove any read with an uncalled base.
1072s   q: discard reads with low quality scores.
1072s   r: rescue barcodes.
1072s   t: truncate final read length to this value.
1072s   E: specify how quality scores are encoded, 'phred33' (Illumina 1.8+/Sanger, default) or 'phred64' (Illumina 1.3-1.5).
1072s   D: capture discarded reads to a file.
1072s   w: set the size of the sliding window as a fraction of the read length, between 0 and 1 (default 0.15).
1072s   s: set the score limit. If the average score within the sliding window drops below this value, the read is discarded (default 10).
1072s   h: display this help message.
1072s 
1072s   Barcode options:
1072s     --inline-null:   barcode is inline with sequence, occurs only on single-end read (default).
1072s     --index-null:    barcode is provded in FASTQ header (Illumina i5 or i7 read).
1072s     --null-index:    barcode is provded in FASTQ header (Illumina i7 read if both i5 and i7 read are provided).
1072s     --inline-inline: barcode is inline with sequence, occurs on single and paired-end read.
1072s     --index-index:   barcode is provded in FASTQ header (Illumina i5 and i7 reads).
1072s     --inline-index:  barcode is inline with sequence on single-end read and occurs in FASTQ header (from either i5 or i7 read).
1072s     --index-inline:  barcode occurs in FASTQ header (Illumina i5 or i7 read) and is inline with single-end sequence (for single-end data) on paired-end read (for paired-end data).
1072s 
1072s   Adapter options:
1072s     --adapter-1 <sequence>: provide adaptor sequence that may occur on the first read for filtering.
1072s     --adapter-2 <sequence>: provide adaptor sequence that may occur on the paired-read for filtering.
1072s       --adapter-mm <mismatches>: number of mismatches allowed in the adapter sequence.
1072s 
1072s   Output options:
1072s     --retain-header: retain unmodified FASTQ headers in the output.
1072s     --merge: if no barcodes are specified, merge all input files into a single output file (or single pair of files).
1072s 
1072s   Advanced options:
1072s     --no-read-trimming: do not trim low quality reads, just discard them.
1072s     --len-limit <limit>: when trimming sequences, specify the minimum length a sequence must be to keep it (default 31bp).
1072s     --filter-illumina: discard reads that have been marked by Illumina's chastity/purity filter as failing.
1072s     --barcode-dist: provide the distace between barcodes to allow for barcode rescue (default 2)
1072s     --mate-pair: raw reads are circularized mate-pair data, first read will be reverse complemented.
1072s     --no-overhang: data does not contain an overhang nucleotide between barcode and seqeunce.
1072s ref_map.pl 2.68
1072s ref_map.pl --samples path --popmap path [-s spacer] --out-path path [--rm-pcr-duplicates] [-X prog:"opts" ...]
1072s 
1072s   Input/Output files:
1072s     --samples: path to the directory containing the samples BAM (or SAM) alignment files.
1072s     --popmap: path to a population map file (format is "<name> TAB <pop>", one sample per line).
1072s     -s: spacer for file names: by default this is empty and the program looks for files
1072s         named 'SAMPLE_NAME.bam'; if this option is given the program looks for files
1072s         named 'SAMPLE_NAME.SPACER.bam'.
1072s     -o,--out-path: path to an output directory.
1072s 
1072s   General options:
1072s     -X: additional options for specific pipeline components, e.g. -X "populations: -p 3 -r 0.50"
1072s     -T: the number of threads/CPUs to use (default: 1).
1072s     -d: Dry run. Do not actually execute anything, just print the individual pipeline commands
1072s         that would be executed.
1072s 
1072s   SNP model options:
1072s     --var-alpha: significance level at which to call variant sites (for gstacks; default: 0.05).
1072s     --gt-alpha: significance level at which to call genotypes (for gstacks; default: 0.05).
1072s 
1072s   Paired-end options:
1072s     --rm-pcr-duplicates: remove all but one copy of read pairs of the same sample that have
1072s                          the same insert length.
1072s     --ignore-pe-reads: ignore paired-end reads even if present in the input
1072s     --unpaired: ignore read pairing (for paired-end GBS; treat READ2's as if they were READ1's)
1072s 
1072s   Population filtering options:
1072s     -r,--min-samples-per-pop: minimum percentage of individuals in a population required to process a locus for that population (for populations; default: 0)
1072s     -p,--min-populations: minimum number of populations a locus must be present in to process a locus (for populations; default: 1)
1072s 
1072s   Miscellaneous:
1072s     --time-components (for benchmarking)
1072s sstacks 2.68
1072s sstacks -P dir -M popmap [-t n_threads]
1072s sstacks -c catalog_path -s sample_path [-s sample_path ...] -o path [-t n_threads]
1072s   -P,--in-path: path to the directory containing Stacks files.
1072s   -M,--popmap: path to a population map file from which to take sample names.
1072s   -s,--sample: filename prefix from which to load sample loci.
1072s   -c,--catalog: path to the catalog.
1072s   -t,--threads: enable parallel execution with n_threads threads.
1072s   -o,--out-path: output path to write results.
1072s   -x: don't verify haplotype of matching locus.
1072s 
1072s Gapped assembly options:
1072s   --disable-gapped: disable gapped alignments between stacks (default: enable gapped alignments).
1072s usage: 
1072s     stacks-dist-extract logfile [section]
1072s     stacks-dist-extract [--pretty] [--out-path path] logfile [section]
1072s     cat logfile | stacks-dist-extract [--pretty] [--section section]
1072s 
1072s Export a paricular section of a Stacks log or distribs file. If you supply a
1072s log path alone, stacks-dist-extract will print the available sections to
1072s output. The log file can also be supplied via stdin.
1072s 
1072s options:
1072s   -h, --help            show this help message and exit
1072s   -p, --pretty          Output data as a table with columns lined up.
1072s   -o, --out-path path   Path to output file.
1072s   -s, --section section
1072s                         Name of section to output from the log file.
1072s Usage:
1072s   stacks-gdb PROGRAM ARGUMENTS
1072s 
1072s e.g.
1072s   stacks-gdb populations -P . -p 3 -r 0.5 --vcf
1072s 
1072s This utility will run the `PROGRAM ARGUMENTS` command as specified, but in
1072s case of a crash it will print additional information, helping us in fixing the
1072s crash.
1072s 
1072s This utility requires GDB, the GNU Debugger, to be installed on the system where
1072s Stacks is run. You can check whether this is the case by just typing:
1072s 
1072s   gdb --version
1072s 
1072s at the command prompt. Note that you may need to load the corresponding module.
1072s GDB is standard scientific software, but may not be installed on some systems.
1072s For further information please contact the administrators of your system;
1072s trying to install GDB without administrator priviledges is not recommended.
1072s 
1072s For questions please contact us, e.g. at stacks-users@googlegroups.com
1072s usage: stacks-integrate-alignments [-h] -P path -B path -O path [-q MIN_MAPQ]
1072s                                    [-a MIN_ALNCOV] [-p MIN_PCTID] [--verbose]
1072s                                    [--version]
1072s 
1072s Extracts the coordinates of the RAD loci from the given BAM file into a
1072s 'locus_coordinates.tsv' table, then rewrites the 'catalog.fa.gz' and
1072s 'catalog.calls' files so that they include the genomic coordinates given in
1072s the input BAM file.
1072s 
1072s options:
1072s   -h, --help            show this help message and exit
1072s   -P, --in-path path    Path to a directory containing Stacks ouput files.
1072s   -B, --bam-path path   Path to a SAM or BAM file containing alignment of de
1072s                         novo catalog loci to a reference genome.
1072s   -O, --out-path path   Path to write the integrated ouput files.
1072s   -q, --min_mapq MIN_MAPQ
1072s                         Minimum mapping quality as listed in the BAM file
1072s                         (default 20).
1072s   -a, --min_alncov MIN_ALNCOV
1072s                         Minimum fraction of the de novo catalog locus that
1072s                         must participate in the alignment (default 0.6).
1072s   -p, --min_pctid MIN_PCTID
1072s                         Minimum BLAST-style percent identity of the largest
1072s                         alignment fragment for a de novo catalog locus
1072s                         (default 0.6).
1072s   --verbose             Provide verbose output.
1072s   --version             show program's version number and exit
1072s usage:
1072s   stacks-samtools-tview -P gstacks_dir -c catalog_locus_id -s sample_name
1072s 
1072s Displays the read alignments of the given sample for the given locus, in text
1072s format, to the standard output. Requires gstacks to have been run with the
1072s --write-alignments option. (This is a convenience wrapper around samtools-tview.)
1072s tsv2bam 2.68
1072s tsv2bam -P stacks_dir -M popmap [-R paired_reads_dir]
1072s tsv2bam -P stacks_dir -s sample [-s sample ...] [-R paired_reads_dir]
1072s 
1072s   -P,--in-dir: input directory.
1072s   -M,--popmap: population map.
1072s   -s,--sample: name of one sample.
1072s   -R,--pe-reads-dir: directory where to find the paired-end reads files (in fastq/fasta/bam (gz) format).
1072s   -t: number of threads to use (default: 1).
1072s 
1072s ustacks 2.68
1072s ustacks -f in_path -o out_path [-M max_dist] [-m min_reads] [-t num_threads]
1072s   -f,--file: input file path.
1072s   -o,--out-path: output path to write results.
1072s   -M: Maximum distance (in nucleotides) allowed between stacks (default 2).
1072s   -m: Minimum number of reads to seed a new stack (default 3).
1072s   -N: Maximum distance allowed to align secondary reads to primary stacks (default: M + 2).
1072s   -t,--threads: enable parallel execution with num_threads threads.
1072s   -i,--in-type: input file type. Supported types: fasta, fastq, gzfasta, or gzfastq (default: guess).
1072s   -n,--name: a name for the sample (default: input file name minus the suffix).
1072s   -R: retain unused reads.
1072s   -H: disable calling haplotypes from secondary reads.
1072s 
1072s   Stack assembly options:
1072s     --force-diff-len: allow raw input reads of different lengths, e.g. after trimming (default: ustacks prefers raw input reads of uniform length).
1072s     --keep-high-cov: disable the algorithm that removes highly-repetitive stacks and nearby errors.
1072s     --high-cov-thres: highly-repetitive stacks threshold, in standard deviation units (default: 3.0).
1072s     --max-locus-stacks <num>: maximum number of stacks at a single de novo locus (default 3).
1072s     --k-len <len>: specify k-mer size for matching between alleles and loci (automatically calculated by default).
1072s     --deleverage: enable the Deleveraging algorithm, used for resolving over merged tags.
1072s 
1072s   Gapped assembly options:
1072s     --max-gaps: number of gaps allowed between stacks before merging (default: 2).
1072s     --min-aln-len: minimum length of aligned sequence in a gapped alignment (default: 0.80).
1072s     --disable-gapped: do not preform gapped alignments between stacks (default: gapped alignements enabled).
1072s 
1072s   Model options:
1072s     --model-type: either 'snp' (default), 'bounded', or 'fixed'
1072s     For the SNP or Bounded SNP model:
1072s       --alpha <num>: chi square significance level required to call a heterozygote or homozygote, either 0.1, 0.05 (default), 0.01, or 0.001.
1072s     For the Bounded SNP model:
1072s       --bound-low <num>: lower bound for epsilon, the error rate, between 0 and 1.0 (default 0).
1072s       --bound-high <num>: upper bound for epsilon, the error rate, between 0 and 1.0 (default 1).
1072s     For the Fixed model:
1072s       --bc-err-freq <num>: specify the barcode error frequency, between 0 and 1.0.
1072s 
1072s   h: display this help message.
1073s autopkgtest [19:35:12]: test run-unit-test: -----------------------]
1073s autopkgtest [19:35:12]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
1073s run-unit-test        PASS (superficial)
1073s autopkgtest [19:35:12]: @@@@@@@@@@@@@@@@@@@@ summary
1073s run-unit-test        PASS (superficial)
1091s nova [W] Timed out waiting for fb83abaa-85d6-473a-afa5-eec0d7c0b3fd to get deleted.