0s autopkgtest [19:06:22]: starting date and time: 2025-03-15 19:06:22+0000 0s autopkgtest [19:06:22]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [19:06:22]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ur5z300x/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade sickle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-21.secgroup --name adt-plucky-s390x-sickle-20250315-190622-juju-7f2275-prod-proposed-migration-environment-2-4952d0ba-8cf0-401b-a581-c7987eb23cb9 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 152s autopkgtest [19:08:54]: testbed dpkg architecture: s390x 152s autopkgtest [19:08:54]: testbed apt version: 2.9.33 153s autopkgtest [19:08:55]: @@@@@@@@@@@@@@@@@@@@ test bed setup 153s autopkgtest [19:08:55]: testbed release detected to be: None 153s autopkgtest [19:08:55]: updating testbed package index (apt update) 154s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 154s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 154s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 154s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 154s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 154s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 155s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 155s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 155s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 155s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 155s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 155s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 155s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 155s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 155s Fetched 1073 kB in 1s (881 kB/s) 156s Reading package lists... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 156s Calculating upgrade... 156s Calculating upgrade... 157s The following packages were automatically installed and are no longer required: 157s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 157s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 157s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 157s linux-tools-6.11.0-8-generic 157s Use 'sudo apt autoremove' to remove them. 157s The following packages will be upgraded: 157s pinentry-curses python3-jinja2 strace 157s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 652 kB of archives. 157s After this operation, 27.6 kB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 157s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 157s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 158s Fetched 652 kB in 1s (793 kB/s) 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 158s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 158s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 158s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 158s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 158s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 158s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 158s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 158s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 158s Setting up strace (6.13+ds-1ubuntu1) ... 158s Processing triggers for man-db (2.13.0-1) ... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s Solving dependencies... 159s The following packages will be REMOVED: 159s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 159s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 159s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 159s linux-tools-6.11.0-8-generic* 159s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 159s After this operation, 167 MB disk space will be freed. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 159s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 159s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 159s Removing libpython3.12t64:s390x (3.12.9-1) ... 159s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 159s Removing libnsl2:s390x (1.3.0-3build3) ... 159s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 159s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 159s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 160s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 160s Processing triggers for libc-bin (2.41-1ubuntu1) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 161s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 161s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 161s autopkgtest [19:09:03]: upgrading testbed (apt dist-upgrade and autopurge) 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 161s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 161s Starting 2 pkgProblemResolver with broken count: 0 161s Done 162s Entering ResolveByKeep 162s 162s Calculating upgrade... 162s The following packages will be upgraded: 162s libc-bin libc-dev-bin libc6 libc6-dev locales 162s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 162s Need to get 9512 kB of archives. 162s After this operation, 8192 B of additional disk space will be used. 162s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 163s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 163s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 165s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 166s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 169s Preconfiguring packages ... 169s Fetched 9512 kB in 7s (1427 kB/s) 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 169s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 169s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 169s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 169s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Setting up libc6:s390x (2.41-1ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 169s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 169s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Setting up libc-bin (2.41-1ubuntu2) ... 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 169s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 169s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 169s Setting up locales (2.41-1ubuntu2) ... 170s Generating locales (this might take a while)... 171s en_US.UTF-8... done 171s Generation complete. 171s Setting up libc-dev-bin (2.41-1ubuntu2) ... 171s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 171s Processing triggers for man-db (2.13.0-1) ... 171s Processing triggers for systemd (257.3-1ubuntu3) ... 172s Reading package lists... 172s Building dependency tree... 172s Reading state information... 173s Starting pkgProblemResolver with broken count: 0 173s Starting 2 pkgProblemResolver with broken count: 0 173s Done 173s Solving dependencies... 173s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 173s autopkgtest [19:09:15]: rebooting testbed after setup commands that affected boot 192s autopkgtest [19:09:34]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 194s autopkgtest [19:09:36]: @@@@@@@@@@@@@@@@@@@@ apt-source sickle 196s Get:1 http://ftpmaster.internal/ubuntu plucky/universe sickle 1.33+git20150314.f3d6ae3-2 (dsc) [2125 B] 196s Get:2 http://ftpmaster.internal/ubuntu plucky/universe sickle 1.33+git20150314.f3d6ae3-2 (tar) [290 kB] 196s Get:3 http://ftpmaster.internal/ubuntu plucky/universe sickle 1.33+git20150314.f3d6ae3-2 (diff) [3968 B] 196s gpgv: Signature made Sat Jun 27 15:43:08 2020 UTC 196s gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 196s gpgv: issuer "npatra974@gmail.com" 196s gpgv: Can't check signature: No public key 196s dpkg-source: warning: cannot verify inline signature for ./sickle_1.33+git20150314.f3d6ae3-2.dsc: no acceptable signature found 197s autopkgtest [19:09:39]: testing package sickle version 1.33+git20150314.f3d6ae3-2 197s autopkgtest [19:09:39]: build not needed 198s autopkgtest [19:09:40]: test run-unit-test: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s Starting pkgProblemResolver with broken count: 0 198s Starting 2 pkgProblemResolver with broken count: 0 198s Done 198s The following NEW packages will be installed: 198s sickle 198s 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. 198s Need to get 18.2 kB of archives. 198s After this operation, 53.2 kB of additional disk space will be used. 198s Get:1 http://ftpmaster.internal/ubuntu plucky/universe s390x sickle s390x 1.33+git20150314.f3d6ae3-2 [18.2 kB] 199s Fetched 18.2 kB in 0s (83.7 kB/s) 199s Selecting previously unselected package sickle. 199s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 199s Preparing to unpack .../sickle_1.33+git20150314.f3d6ae3-2_s390x.deb ... 199s Unpacking sickle (1.33+git20150314.f3d6ae3-2) ... 199s Setting up sickle (1.33+git20150314.f3d6ae3-2) ... 199s Processing triggers for man-db (2.13.0-1) ... 200s autopkgtest [19:09:42]: test run-unit-test: [----------------------- 200s Test 1 200s 200s SE input file: test.fastq 200s 200s Total FastQ records: 2500 200s FastQ records kept: 2483 200s FastQ records discarded: 17 200s 200s 200s SE input file: test.f.fastq 200s 200s Total FastQ records: 1250 200s FastQ records kept: 962 200s FastQ records discarded: 288 200s 200s 200s SE input file: test.r.fastq 200s 200s Total FastQ records: 1250 200s FastQ records kept: 1233 200s FastQ records discarded: 17 200s 200s 200s SE input file: test.fastq 200s 200s Total FastQ records: 2500 200s FastQ records kept: 2500 200s FastQ records discarded: 0 200s 200s PASS 200s 200s Test 2 200s 200s PE forward file: test.fastq 200s PE reverse file: test.r.fastq 200s 200s Total input FastQ records: 2500 (1250 pairs) 200s 200s FastQ paired records kept: 2500 (1250 pairs) 200s FastQ single records kept: 0 (from PE1: 0, from PE2: 0) 200s FastQ paired records discarded: 0 (0 pairs) 200s FastQ single records discarded: 0 (from PE1: 0, from PE2: 0) 200s 200s PASS 200s Warning: PE file 2 is shorter than PE file 1. Disregarding rest of PE file 1. 201s autopkgtest [19:09:43]: test run-unit-test: -----------------------] 201s run-unit-test PASS 201s autopkgtest [19:09:43]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 202s autopkgtest [19:09:44]: @@@@@@@@@@@@@@@@@@@@ summary 202s run-unit-test PASS 207s nova [W] Using flock in prodstack6-s390x 207s Creating nova instance adt-plucky-s390x-sickle-20250315-190622-juju-7f2275-prod-proposed-migration-environment-2-4952d0ba-8cf0-401b-a581-c7987eb23cb9 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 207s nova [W] Timed out waiting for f9a0ce7b-f764-4c23-81e1-15db77e23c1b to get deleted.