0s autopkgtest [20:06:28]: starting date and time: 2024-11-12 20:06:28+0000 0s autopkgtest [20:06:28]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky 0s autopkgtest [20:06:28]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.swn74slw/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:cmake --apt-upgrade seqan-needle --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=cmake/3.31.0-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-8.secgroup --name adt-plucky-s390x-seqan-needle-20241112-200628-juju-7f2275-prod-proposed-migration-environment-20-cfeb6e15-7773-4ba2-9f90-47349d774488 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 105s autopkgtest [20:08:13]: testbed dpkg architecture: s390x 105s autopkgtest [20:08:13]: testbed apt version: 2.9.8 105s autopkgtest [20:08:13]: @@@@@@@@@@@@@@@@@@@@ test bed setup 106s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [88.5 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B] 106s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [853 kB] 107s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.3 kB] 107s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [95.1 kB] 107s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [568 kB] 107s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [16.6 kB] 107s Fetched 1717 kB in 1s (2149 kB/s) 107s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 109s The following packages will be upgraded: 109s libarchive13t64 libclang-cpp18 libedit2 libllvm18 python3-cffi-backend 109s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Need to get 49.3 MB of archives. 109s After this operation, 1024 B of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cffi-backend s390x 1.17.1-2 [81.5 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libedit2 s390x 3.1-20240808-1 [107 kB] 110s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libarchive13t64 s390x 3.7.4-1.1 [416 kB] 110s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libclang-cpp18 s390x 1:18.1.8-12 [15.8 MB] 110s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libllvm18 s390x 1:18.1.8-12 [32.9 MB] 111s Fetched 49.3 MB in 2s (26.6 MB/s) 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55522 files and directories currently installed.) 111s Preparing to unpack .../python3-cffi-backend_1.17.1-2_s390x.deb ... 111s Unpacking python3-cffi-backend:s390x (1.17.1-2) over (1.17.1-1) ... 111s Preparing to unpack .../libedit2_3.1-20240808-1_s390x.deb ... 111s Unpacking libedit2:s390x (3.1-20240808-1) over (3.1-20240517-1) ... 111s Preparing to unpack .../libarchive13t64_3.7.4-1.1_s390x.deb ... 111s Unpacking libarchive13t64:s390x (3.7.4-1.1) over (3.7.4-1ubuntu1) ... 111s Preparing to unpack .../libclang-cpp18_1%3a18.1.8-12_s390x.deb ... 111s Unpacking libclang-cpp18 (1:18.1.8-12) over (1:18.1.8-11) ... 112s Preparing to unpack .../libllvm18_1%3a18.1.8-12_s390x.deb ... 112s Unpacking libllvm18:s390x (1:18.1.8-12) over (1:18.1.8-11) ... 112s Setting up libedit2:s390x (3.1-20240808-1) ... 112s Setting up libarchive13t64:s390x (3.7.4-1.1) ... 112s Setting up python3-cffi-backend:s390x (1.17.1-2) ... 112s Setting up libllvm18:s390x (1:18.1.8-12) ... 112s Setting up libclang-cpp18 (1:18.1.8-12) ... 112s Processing triggers for man-db (2.12.1-3) ... 113s Processing triggers for libc-bin (2.40-1ubuntu3) ... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease 114s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 114s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 114s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 114s Reading package lists... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s autopkgtest [20:08:26]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 118s autopkgtest [20:08:26]: @@@@@@@@@@@@@@@@@@@@ apt-source seqan-needle 122s Get:1 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (dsc) [2275 B] 122s Get:2 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (tar) [5049 kB] 122s Get:3 http://ftpmaster.internal/ubuntu plucky/universe seqan-needle 1.0.2+ds-2 (diff) [6484 B] 122s gpgv: Signature made Mon Jan 8 18:55:15 2024 UTC 122s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 122s gpgv: issuer "tillea@rki.de" 122s gpgv: Can't check signature: No public key 122s dpkg-source: warning: cannot verify inline signature for ./seqan-needle_1.0.2+ds-2.dsc: no acceptable signature found 122s autopkgtest [20:08:30]: testing package seqan-needle version 1.0.2+ds-2 123s autopkgtest [20:08:31]: build not needed 125s autopkgtest [20:08:33]: test run-unit-tests: preparing testbed 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 132s Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 133s The following additional packages will be installed: 133s build-essential cmake cmake-data cpp cpp-14 cpp-14-s390x-linux-gnu 133s cpp-s390x-linux-gnu g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu 133s gcc gcc-14 gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu googletest libasan8 133s libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgomp1 libgtest-dev 133s libisl23 libitm1 libjsoncpp26 libmpc3 librhash1 libseqan3-dev 133s libstdc++-14-dev libubsan1 rapidjson-dev zlib1g-dev 133s Suggested packages: 133s cmake-doc cmake-format elpa-cmake-mode ninja-build cpp-doc gcc-14-locales 133s cpp-14-doc gcc-14-doc gcc-multilib manpages-dev autoconf automake libtool 133s flex bison gdb gcc-doc gdb-s390x-linux-gnu libstdc++-14-doc rapidjson-doc 133s Recommended packages: 133s bzip2-doc 133s The following NEW packages will be installed: 133s autopkgtest-satdep build-essential cmake cmake-data cpp cpp-14 133s cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu g++ g++-14 g++-14-s390x-linux-gnu 133s g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu 133s googletest libasan8 libbz2-dev libcc1-0 libcereal-dev libgcc-14-dev libgomp1 133s libgtest-dev libisl23 libitm1 libjsoncpp26 libmpc3 librhash1 libseqan3-dev 133s libstdc++-14-dev libubsan1 rapidjson-dev zlib1g-dev 133s 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 66.9 MB/66.9 MB of archives. 133s After this operation, 224 MB of additional disk space will be used. 133s Get:1 /tmp/autopkgtest.ajAN6Z/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [736 B] 133s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 133s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 133s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-7ubuntu1 [9570 kB] 135s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-7ubuntu1 [1022 B] 135s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B] 135s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-7ubuntu1 [50.6 kB] 135s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-7ubuntu1 [151 kB] 135s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-7ubuntu1 [30.9 kB] 135s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-7ubuntu1 [2963 kB] 136s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-7ubuntu1 [1184 kB] 136s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-7ubuntu1 [1037 kB] 136s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-7ubuntu1 [18.7 MB] 137s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-7ubuntu1 [515 kB] 137s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B] 137s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B] 137s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-7ubuntu1 [2607 kB] 137s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-7ubuntu1 [11.0 MB] 137s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-7ubuntu1 [19.8 kB] 137s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B] 137s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B] 137s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 137s Get:24 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x cmake-data all 3.31.0-1 [2290 kB] 137s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libjsoncpp26 s390x 1.9.6-2 [80.7 kB] 137s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x librhash1 s390x 1.4.5-1 [132 kB] 137s Get:27 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x cmake s390x 3.31.0-1 [12.9 MB] 138s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x googletest all 1.15.2-1 [523 kB] 138s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 138s Get:30 http://ftpmaster.internal/ubuntu plucky/universe s390x rapidjson-dev all 1.1.0+dfsg2-7.3 [96.9 kB] 138s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x libcereal-dev s390x 1.3.2+dfsg-5 [222 kB] 138s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x libgtest-dev s390x 1.15.2-1 [273 kB] 138s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 138s Get:34 http://ftpmaster.internal/ubuntu plucky/universe s390x libseqan3-dev all 3.3.0+ds-2 [747 kB] 138s Fetched 66.9 MB in 5s (12.4 MB/s) 138s Selecting previously unselected package libisl23:s390x. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 55522 files and directories currently installed.) 138s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ... 138s Unpacking libisl23:s390x (0.27-1) ... 138s Selecting previously unselected package libmpc3:s390x. 138s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ... 138s Unpacking libmpc3:s390x (1.3.1-1build2) ... 138s Selecting previously unselected package cpp-14-s390x-linux-gnu. 138s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-7ubuntu1_s390x.deb ... 138s Unpacking cpp-14-s390x-linux-gnu (14.2.0-7ubuntu1) ... 138s Selecting previously unselected package cpp-14. 138s Preparing to unpack .../03-cpp-14_14.2.0-7ubuntu1_s390x.deb ... 138s Unpacking cpp-14 (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package cpp-s390x-linux-gnu. 139s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 139s Unpacking cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 139s Selecting previously unselected package cpp. 139s Preparing to unpack .../05-cpp_4%3a14.1.0-2ubuntu1_s390x.deb ... 139s Unpacking cpp (4:14.1.0-2ubuntu1) ... 139s Selecting previously unselected package libcc1-0:s390x. 139s Preparing to unpack .../06-libcc1-0_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libcc1-0:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package libgomp1:s390x. 139s Preparing to unpack .../07-libgomp1_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libgomp1:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package libitm1:s390x. 139s Preparing to unpack .../08-libitm1_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libitm1:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package libasan8:s390x. 139s Preparing to unpack .../09-libasan8_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libasan8:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package libubsan1:s390x. 139s Preparing to unpack .../10-libubsan1_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libubsan1:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package libgcc-14-dev:s390x. 139s Preparing to unpack .../11-libgcc-14-dev_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libgcc-14-dev:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package gcc-14-s390x-linux-gnu. 139s Preparing to unpack .../12-gcc-14-s390x-linux-gnu_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking gcc-14-s390x-linux-gnu (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package gcc-14. 139s Preparing to unpack .../13-gcc-14_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking gcc-14 (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package gcc-s390x-linux-gnu. 139s Preparing to unpack .../14-gcc-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 139s Unpacking gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 139s Selecting previously unselected package gcc. 139s Preparing to unpack .../15-gcc_4%3a14.1.0-2ubuntu1_s390x.deb ... 139s Unpacking gcc (4:14.1.0-2ubuntu1) ... 139s Selecting previously unselected package libstdc++-14-dev:s390x. 139s Preparing to unpack .../16-libstdc++-14-dev_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking libstdc++-14-dev:s390x (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package g++-14-s390x-linux-gnu. 139s Preparing to unpack .../17-g++-14-s390x-linux-gnu_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking g++-14-s390x-linux-gnu (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package g++-14. 139s Preparing to unpack .../18-g++-14_14.2.0-7ubuntu1_s390x.deb ... 139s Unpacking g++-14 (14.2.0-7ubuntu1) ... 139s Selecting previously unselected package g++-s390x-linux-gnu. 139s Preparing to unpack .../19-g++-s390x-linux-gnu_4%3a14.1.0-2ubuntu1_s390x.deb ... 139s Unpacking g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 139s Selecting previously unselected package g++. 139s Preparing to unpack .../20-g++_4%3a14.1.0-2ubuntu1_s390x.deb ... 139s Unpacking g++ (4:14.1.0-2ubuntu1) ... 139s Selecting previously unselected package build-essential. 139s Preparing to unpack .../21-build-essential_12.10ubuntu1_s390x.deb ... 139s Unpacking build-essential (12.10ubuntu1) ... 139s Selecting previously unselected package cmake-data. 139s Preparing to unpack .../22-cmake-data_3.31.0-1_all.deb ... 139s Unpacking cmake-data (3.31.0-1) ... 140s Selecting previously unselected package libjsoncpp26:s390x. 140s Preparing to unpack .../23-libjsoncpp26_1.9.6-2_s390x.deb ... 140s Unpacking libjsoncpp26:s390x (1.9.6-2) ... 140s Selecting previously unselected package librhash1:s390x. 140s Preparing to unpack .../24-librhash1_1.4.5-1_s390x.deb ... 140s Unpacking librhash1:s390x (1.4.5-1) ... 140s Selecting previously unselected package cmake. 140s Preparing to unpack .../25-cmake_3.31.0-1_s390x.deb ... 140s Unpacking cmake (3.31.0-1) ... 140s Selecting previously unselected package googletest. 140s Preparing to unpack .../26-googletest_1.15.2-1_all.deb ... 140s Unpacking googletest (1.15.2-1) ... 140s Selecting previously unselected package libbz2-dev:s390x. 140s Preparing to unpack .../27-libbz2-dev_1.0.8-6_s390x.deb ... 140s Unpacking libbz2-dev:s390x (1.0.8-6) ... 140s Selecting previously unselected package rapidjson-dev. 140s Preparing to unpack .../28-rapidjson-dev_1.1.0+dfsg2-7.3_all.deb ... 140s Unpacking rapidjson-dev (1.1.0+dfsg2-7.3) ... 140s Selecting previously unselected package libcereal-dev. 140s Preparing to unpack .../29-libcereal-dev_1.3.2+dfsg-5_s390x.deb ... 140s Unpacking libcereal-dev (1.3.2+dfsg-5) ... 140s Selecting previously unselected package libgtest-dev:s390x. 140s Preparing to unpack .../30-libgtest-dev_1.15.2-1_s390x.deb ... 140s Unpacking libgtest-dev:s390x (1.15.2-1) ... 140s Selecting previously unselected package zlib1g-dev:s390x. 140s Preparing to unpack .../31-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 140s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 140s Selecting previously unselected package libseqan3-dev. 140s Preparing to unpack .../32-libseqan3-dev_3.3.0+ds-2_all.deb ... 140s Unpacking libseqan3-dev (3.3.0+ds-2) ... 140s Selecting previously unselected package autopkgtest-satdep. 140s Preparing to unpack .../33-1-autopkgtest-satdep.deb ... 140s Unpacking autopkgtest-satdep (0) ... 140s Setting up libgomp1:s390x (14.2.0-7ubuntu1) ... 140s Setting up googletest (1.15.2-1) ... 140s Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... 140s Setting up libjsoncpp26:s390x (1.9.6-2) ... 140s Setting up libmpc3:s390x (1.3.1-1build2) ... 140s Setting up libubsan1:s390x (14.2.0-7ubuntu1) ... 140s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 140s Setting up libasan8:s390x (14.2.0-7ubuntu1) ... 140s Setting up cmake-data (3.31.0-1) ... 140s Setting up librhash1:s390x (1.4.5-1) ... 140s Setting up libisl23:s390x (0.27-1) ... 140s Setting up libcc1-0:s390x (14.2.0-7ubuntu1) ... 140s Setting up libitm1:s390x (14.2.0-7ubuntu1) ... 140s Setting up libbz2-dev:s390x (1.0.8-6) ... 140s Setting up libgtest-dev:s390x (1.15.2-1) ... 140s Setting up libcereal-dev (1.3.2+dfsg-5) ... 140s Setting up cpp-14-s390x-linux-gnu (14.2.0-7ubuntu1) ... 140s Setting up cpp-14 (14.2.0-7ubuntu1) ... 140s Setting up cmake (3.31.0-1) ... 140s Setting up libgcc-14-dev:s390x (14.2.0-7ubuntu1) ... 140s Setting up libstdc++-14-dev:s390x (14.2.0-7ubuntu1) ... 140s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 140s Setting up libseqan3-dev (3.3.0+ds-2) ... 140s Setting up gcc-14-s390x-linux-gnu (14.2.0-7ubuntu1) ... 140s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 140s Setting up g++-14-s390x-linux-gnu (14.2.0-7ubuntu1) ... 140s Setting up cpp (4:14.1.0-2ubuntu1) ... 140s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 140s Setting up gcc-14 (14.2.0-7ubuntu1) ... 140s Setting up g++-14 (14.2.0-7ubuntu1) ... 140s Setting up gcc (4:14.1.0-2ubuntu1) ... 140s Setting up g++ (4:14.1.0-2ubuntu1) ... 140s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 140s Setting up build-essential (12.10ubuntu1) ... 140s Setting up autopkgtest-satdep (0) ... 140s Processing triggers for man-db (2.12.1-3) ... 140s Processing triggers for libc-bin (2.40-1ubuntu3) ... 142s (Reading database ... 61662 files and directories currently installed.) 142s Removing autopkgtest-satdep (0) ... 142s autopkgtest [20:08:50]: test run-unit-tests: [----------------------- 142s -- The C compiler identification is GNU 14.2.0 143s -- The CXX compiler identification is GNU 14.2.0 143s -- Detecting C compiler ABI info 143s -- Detecting C compiler ABI info - done 143s -- Check for working C compiler: /usr/bin/cc - skipped 143s -- Detecting C compile features 143s -- Detecting C compile features - done 143s -- Detecting CXX compiler ABI info 143s -- Detecting CXX compiler ABI info - done 143s -- Check for working CXX compiler: /usr/bin/c++ - skipped 143s -- Detecting CXX compile features 143s -- Detecting CXX compile features - done 144s CMake Deprecation Warning at lib/robin-hood-hashing/CMakeLists.txt:1 (cmake_minimum_required): 144s Compatibility with CMake < 3.10 will be removed from a future version of 144s CMake. 144s 144s Update the VERSION argument value or use a ... suffix to tell 144s CMake that the project does not need compatibility with older versions. 144s 144s 144s CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): 144s Compatibility with CMake < 3.10 will be removed from a future version of 144s CMake. 144s 144s Update the VERSION argument value or use a ... suffix to tell 144s CMake that the project does not need compatibility with older versions. 144s 144s 144s -- Found OpenMP_C: -fopenmp (found version "4.5") 145s -- Found OpenMP_CXX: -fopenmp (found version "4.5") 145s CMake Deprecation Warning at doc/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the pro-- Found OpenMP: TRUE (found version "4.5") 145s -- You can run `make` to build the application. 145s ject does not need compatibility with older versions. 145s 145s 145s -- Doxygen not found. 145s CMake Deprecation Warning at test/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s CMake Deprecation Warning at test/data/datasources.cmake:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s Call Stack (most recent call first): 145s test/CMakeLists.txt:98 (include) 145s 145s 145s CMake Deprecation Warning at test/api/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s CMake Deprecation Warning at test/cli/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s CMake Deprecation Warning at test/coverage/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be -- You can run `make test` to build and run tests. 145s removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s -- Configuring done (2.2s) 145s -- Generating done (0.0s) 145s -- Build files have been written to: /tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests 145s Running tests... 145s Test project /tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests 145s gmake[1]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests/test' 145s gmake[2]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 145s CMake Deprecation Warning at lib/robin-hood-hashing/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s -- You can run `make` to build the application. 145s CMake Deprecation Warning at doc/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s -- Doxygen not found. 145s CMake Deprecation Warning at test/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s CMake Deprecation Warning at test/data/datasources.cmake:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s Call Stack (most recent call first): 145s test/CMakeLists.txt:98 (include) 145s 145s 145s CMake Deprecation Warning at test/api/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s CMake Deprecation Warning at test/cli/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s -- You can run `make test` to build and run tests. 145s CMake Deprecation Warning at test/coverage/CMakeLists.txt:1 (cmake_minimum_required): 145s Compatibility with CMake < 3.10 will be removed from a future version of 145s CMake. 145s 145s Update the VERSION argument value or use a ... suffix to tell 145s CMake that the project does not need compatibility with older versions. 145s 145s 145s -- Configuring done (0.5s) 145s -- Generating done (0.0s) 145s -- Build files have been written to: /tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests 145s gmake[3]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 145s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 145s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 145s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 145s [ 6%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o 148s /tmp/autopkgtest.ajAN6Z/build.2fu/src/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: 148s /tmp/autopkgtest.ajAN6Z/build.2fu/src/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 148s 242 | seqan3::detail::latch sync_point{thread_count}; 148s | ^~~~~~~~~~~~ 148s /tmp/autopkgtest.ajAN6Z/build.2fu/src/src/ibf.cpp:243:40: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 148s 243 | seqan3::detail::latch sync_point_2{thread_count}; 148s | ^~~~~~~~~~~~ 165s [ 13%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o 180s [ 20%] Linking CXX static library ../lib/libneedle_lib.a 180s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 180s [ 20%] Built target needle_lib 180s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 180s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 180s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 180s [ 26%] Building CXX object test/api/CMakeFiles/minimiser_test.dir/minimiser_test.cpp.o 192s [ 33%] Linking CXX executable minimiser_test 192s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 192s [ 33%] Built target minimiser_test 192s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 192s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 192s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 192s [ 40%] Building CXX object test/api/CMakeFiles/count_test.dir/count_test.cpp.o 198s [ 46%] Linking CXX executable count_test 198s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 198s [ 46%] Built target count_test 198s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 198s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 198s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 198s [ 53%] Building CXX object test/api/CMakeFiles/insert_delete_test.dir/insert_delete_test.cpp.o 207s [ 60%] Linking CXX executable insert_delete_test 207s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 207s [ 60%] Built target insert_delete_test 207s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 207s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 207s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 207s [ 66%] Building CXX object test/api/CMakeFiles/estimate_test.dir/estimate_test.cpp.o 214s [ 73%] Linking CXX executable estimate_test 214s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 214s [ 73%] Built target estimate_test 214s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 214s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 214s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 214s [ 80%] Building CXX object test/api/CMakeFiles/ibf_test.dir/ibf_test.cpp.o 224s [ 86%] Linking CXX executable ibf_test 224s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 224s [ 86%] Built target ibf_test 224s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 224s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 224s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 224s [ 93%] Building CXX object test/api/CMakeFiles/ibfmin_test.dir/ibfmin_test.cpp.o 232s [100%] Linking CXX executable ibfmin_test 232s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s [100%] Built target ibfmin_test 232s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s [100%] Built target api_test 232s gmake[3]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[2]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[1]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests/test' 232s gmake[1]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests/test' 232s gmake[2]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s CMake Deprecation Warning at lib/robin-hood-hashing/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s CMake Deprecation Warning at src/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s -- You can run `make` to build the application. 232s CMake Deprecation Warning at doc/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s -- Doxygen not found. 232s CMake Deprecation Warning at test/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s CMake Deprecation Warning at test/data/datasources.cmake:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s Call Stack (most recent call first): 232s test/CMakeLists.txt:98 (include) 232s 232s 232s CMake Deprecation Warning at test/api/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s CMake Deprecation Warning at test/cli/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s CMake Deprecation Warning at test/coverage/CMakeLists.txt:1 (cmake_minimum_required): 232s Compatibility with CMake < 3.10 will be removed from a future version of 232s CMake. 232s 232s Update the VERSION argument value or use a ... suffix to tell 232s CMake that the project does not need compatibility with older versions. 232s 232s 232s -- You can run `make test` to build and run tests. 232s -- Configuring done (0.5s) 232s -- Generating done (0.0s) 232s -- Build files have been written to: /tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests 232s gmake[3]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s [ 1%] Creating directories for 'datasource--exp_01.fasta' 232s [ 2%] Performing download step (verify) for 'datasource--exp_01.fasta' 232s -- verifying file... 232s file='/tmp/autopkgtest.ajAN6Z/build.2fu/src/test/data/exp_01.fasta' 232s -- verifying file... done 232s [ 4%] No update step for 'datasource--exp_01.fasta' 232s [ 5%] No patch step for 'datasource--exp_01.fasta' 232s [ 7%] No configure step for 'datasource--exp_01.fasta' 232s [ 8%] No build step for 'datasource--exp_01.fasta' 232s [ 9%] Performing install step for 'datasource--exp_01.fasta' 232s [ 11%] No test step for 'datasource--exp_01.fasta' 232s [ 12%] Completed 'datasource--exp_01.fasta' 232s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s [ 12%] Built target datasource--exp_01.fasta 232s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 232s [ 14%] Building CXX object src/CMakeFiles/needle_lib.dir/ibf.cpp.o 235s /tmp/autopkgtest.ajAN6Z/build.2fu/src/src/ibf.cpp: In function ‘void fill_hash_table_parallel(const min_arguments&, seqan3::sequence_file_input >&, robin_hood::unordered_node_map&, robin_hood::unordered_node_map&, robin_hood::unordered_set&, robin_hood::unordered_set&, bool, uint8_t)’: 235s /tmp/autopkgtest.ajAN6Z/build.2fu/src/src/ibf.cpp:242:38: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 235s 242 | seqan3::detail::latch sync_point{thread_count}; 235s | ^~~~~~~~~~~~ 235s /tmp/autopkgtest.ajAN6Z/build.2fu/src/src/ibf.cpp:243:40: warning: narrowing conversion of ‘thread_count’ from ‘size_t’ {aka ‘long unsigned int’} to ‘ptrdiff_t’ {aka ‘long int’} [-Wnarrowing] 235s 243 | seqan3::detail::latch sync_point_2{thread_count}; 235s | ^~~~~~~~~~~~ 253s [ 15%] Building CXX object src/CMakeFiles/needle_lib.dir/estimate.cpp.o 268s [ 16%] Linking CXX static library ../lib/libneedle_lib.a 268s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 268s [ 16%] Built target needle_lib 268s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 268s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 268s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 268s [ 18%] Building CXX object src/CMakeFiles/needle.dir/main.cpp.o 286s [ 19%] Linking CXX executable ../bin/needle 286s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 286s [ 19%] Built target needle 286s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 286s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 286s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 286s [ 21%] Building CXX object test/cli/CMakeFiles/delete_options_test.dir/delete_options_test.cpp.o 291s [ 22%] Linking CXX executable delete_options_test 291s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 291s [ 22%] Built target delete_options_test 291s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 291s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 291s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 291s [ 23%] Building CXX object test/cli/CMakeFiles/needle_options_test.dir/needle_options_test.cpp.o 293s [ 25%] Linking CXX executable needle_options_test 293s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 293s [ 25%] Built target needle_options_test 293s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 293s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 293s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 293s [ 26%] Creating directories for 'datasource--mini_example.minimiser' 293s [ 26%] Performing download step (verify) for 'datasource--mini_example.minimiser' 293s -- verifying file... 293s file='/tmp/autopkgtest.ajAN6Z/build.2fu/src/test/data/mini_example.minimiser' 293s -- verifying file... done 293s [ 28%] No update step for 'datasource--mini_example.minimiser' 293s [ 29%] No patch step for 'datasource--mini_example.minimiser' 293s [ 30%] No configure step for 'datasource--mini_example.minimiser' 293s [ 32%] No build step for 'datasource--mini_example.minimiser' 293s [ 33%] Performing install step for 'datasource--mini_example.minimiser' 293s [ 35%] No test step for 'datasource--mini_example.minimiser' 293s [ 36%] Completed 'datasource--mini_example.minimiser' 294s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s [ 36%] Built target datasource--mini_example.minimiser 294s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s [ 38%] Creating directories for 'datasource--mini_example.fasta' 294s [ 39%] Performing download step (verify) for 'datasource--mini_example.fasta' 294s -- verifying file... 294s file='/tmp/autopkgtest.ajAN6Z/build.2fu/src/test/data/mini_example.fasta' 294s -- verifying file... done 294s [ 40%] No update step for 'datasource--mini_example.fasta' 294s [ 42%] No patch step for 'datasource--mini_example.fasta' 294s [ 43%] No configure step for 'datasource--mini_example.fasta' 294s [ 45%] No build step for 'datasource--mini_example.fasta' 294s [ 46%] Performing install step for 'datasource--mini_example.fasta' 294s [ 47%] No test step for 'datasource--mini_example.fasta' 294s [ 49%] Completed 'datasource--mini_example.fasta' 294s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s [ 49%] Built target datasource--mini_example.fasta 294s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 294s [ 50%] Building CXX object test/cli/CMakeFiles/ibf_options_test.dir/ibf_options_test.cpp.o 296s [ 52%] Linking CXX executable ibf_options_test 296s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 296s [ 52%] Built target ibf_options_test 296s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 297s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 297s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 297s [ 53%] Building CXX object test/cli/CMakeFiles/insert_options_test.dir/insert_options_test.cpp.o 302s [ 54%] Linking CXX executable insert_options_test 302s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 302s [ 54%] Built target insert_options_test 302s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 302s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 302s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 302s [ 56%] Building CXX object test/cli/CMakeFiles/minimiser_options_test.dir/minimiser_options_test.cpp.o 305s [ 57%] Linking CXX executable minimiser_options_test 305s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s [ 57%] Built target minimiser_options_test 305s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s [ 59%] Creating directories for 'datasource--mini_gen.fasta' 305s [ 60%] Performing download step (verify) for 'datasource--mini_gen.fasta' 305s -- verifying file... 305s file='/tmp/autopkgtest.ajAN6Z/build.2fu/src/test/data/mini_gen.fasta' 305s -- verifying file... done 305s [ 61%] No update step for 'datasource--mini_gen.fasta' 305s [ 63%] No patch step for 'datasource--mini_gen.fasta' 305s [ 64%] No configure step for 'datasource--mini_gen.fasta' 305s [ 66%] No build step for 'datasource--mini_gen.fasta' 305s [ 67%] Performing install step for 'datasource--mini_gen.fasta' 305s [ 69%] No test step for 'datasource--mini_gen.fasta' 305s [ 70%] Completed 'datasource--mini_gen.fasta' 305s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s [ 70%] Built target datasource--mini_gen.fasta 305s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s [ 71%] Creating directories for 'datasource--ibf_1' 305s [ 73%] Performing download step (verify) for 'datasource--ibf_1' 305s -- verifying file... 305s file='/tmp/autopkgtest.ajAN6Z/build.2fu/src/test/data/IBF_1' 305s -- verifying file... done 305s [ 74%] No update step for 'datasource--ibf_1' 305s [ 76%] No patch step for 'datasource--ibf_1' 305s [ 77%] No configure step for 'datasource--ibf_1' 305s [ 78%] No build step for 'datasource--ibf_1' 305s [ 80%] Performing install step for 'datasource--ibf_1' 305s [ 81%] No test step for 'datasource--ibf_1' 305s [ 83%] Completed 'datasource--ibf_1' 305s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s [ 83%] Built target datasource--ibf_1 305s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 305s [ 84%] Building CXX object test/cli/CMakeFiles/estimate_options_test.dir/estimate_options_test.cpp.o 311s [ 85%] Linking CXX executable estimate_options_test 311s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s [ 85%] Built target estimate_options_test 311s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s [ 87%] Creating directories for 'datasource--mini_gen.genome' 311s [ 88%] Performing download step (verify) for 'datasource--mini_gen.genome' 311s -- verifying file... 311s file='/tmp/autopkgtest.ajAN6Z/build.2fu/src/test/data/mini_gen.genome' 311s -- verifying file... done 311s [ 90%] No update step for 'datasource--mini_gen.genome' 311s [ 91%] No patch step for 'datasource--mini_gen.genome' 311s [ 92%] No configure step for 'datasource--mini_gen.genome' 311s [ 94%] No build step for 'datasource--mini_gen.genome' 311s [ 95%] Performing install step for 'datasource--mini_gen.genome' 311s [ 97%] No test step for 'datasource--mini_gen.genome' 311s [ 98%] Completed 'datasource--mini_gen.genome' 311s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s [ 98%] Built target datasource--mini_gen.genome 311s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 311s [ 98%] Building CXX object test/cli/CMakeFiles/count_options_test.dir/count_options_test.cpp.o 314s [100%] Linking CXX executable count_options_test 314s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 314s [100%] Built target count_options_test 314s gmake[4]: Entering directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 314s gmake[4]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 314s [100%] Built target cli_test 314s gmake[3]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 314s gmake[2]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests' 314s gmake[1]: Leaving directory '/tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests/test' 314s Start 1: test/api/count_test 314s 1/13 Test #1: test/api/count_test ............... Passed 0.00 sec 314s Start 2: test/api/insert_delete_test 314s 2/13 Test #2: test/api/insert_delete_test .......***Failed 0.01 sec 314s Start 3: test/api/estimate_test 320s 3/13 Test #3: test/api/estimate_test ............ Passed 5.73 sec 320s Start 4: test/api/ibf_test 321s 4/13 Test #4: test/api/ibf_test ................. Passed 1.68 sec 321s Start 5: test/api/ibfmin_test 321s 5/13 Test #5: test/api/ibfmin_test ..............***Exception: SegFault 0.10 sec 321s Start 6: test/api/minimiser_test 321s 6/13 Test #6: test/api/minimiser_test ........... Passed 0.00 sec 321s Start 7: test/cli/needle_options_test 321s 7/13 Test #7: test/cli/needle_options_test ...... Passed 0.00 sec 321s Start 8: test/cli/ibf_options_test 328s 8/13 Test #8: test/cli/ibf_options_test .........***Failed 6.56 sec 328s Start 9: test/cli/insert_options_test 332s 9/13 Test #9: test/cli/insert_options_test ...... Passed 3.55 sec 332s Start 10: test/cli/minimiser_options_test 332s 10/13 Test #10: test/cli/minimiser_options_test ... Passed 0.02 sec 332s Start 11: test/cli/estimate_options_test 342s 11/13 Test #11: test/cli/estimate_options_test .... Passed 10.21 sec 342s Start 12: test/cli/count_options_test 342s 12/13 Test #12: test/cli/count_options_test ....... Passed 0.02 sec 342s Start 13: test/cli/delete_options_test 348s 13/13 Test #13: test/cli/delete_options_test ...... Passed 5.67 sec 348s Errors while running CTest 348s Output from these tests are in: /tmp/autopkgtest.ajAN6Z/build.2fu/src/build-tests/Testing/Temporary/LastTest.log 348s Use "--rerun-failed --output-on-failure" to re-run the failed cases verbosely. 348s make: *** [Makefile:91: test] Error 8 348s 348s 77% tests passed, 3 tests failed out of 13 348s 348s Total Test time (real) = 202.71 sec 348s 348s The following tests FAILED: 348s 2 - test/api/insert_delete_test (Failed) 348s 5 - test/api/ibfmin_test (SEGFAULT) 348s 8 - test/cli/ibf_options_test (Failed) 348s autopkgtest [20:12:16]: test run-unit-tests: -----------------------] 348s autopkgtest [20:12:16]: test run-unit-tests: - - - - - - - - - - results - - - - - - - - - - 348s run-unit-tests FAIL non-zero exit status 2 349s autopkgtest [20:12:17]: @@@@@@@@@@@@@@@@@@@@ summary 349s run-unit-tests FAIL non-zero exit status 2 362s nova [W] Using flock in prodstack6-s390x 362s Creating nova instance adt-plucky-s390x-seqan-needle-20241112-200628-juju-7f2275-prod-proposed-migration-environment-20-cfeb6e15-7773-4ba2-9f90-47349d774488 from image adt/ubuntu-plucky-s390x-server-20241112.img (UUID 6071d326-3c5b-4867-8a8c-d8cb0a44deea)...