0s autopkgtest [18:59:32]: starting date and time: 2025-03-15 18:59:32+0000 0s autopkgtest [18:59:32]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:59:32]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ke_xx_w3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade samblaster --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-12.secgroup --name adt-plucky-s390x-samblaster-20250315-185932-juju-7f2275-prod-proposed-migration-environment-20-60cc07d6-e982-43d1-bfe3-905c647dbef7 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 132s autopkgtest [19:01:44]: testbed dpkg architecture: s390x 132s autopkgtest [19:01:44]: testbed apt version: 2.9.33 133s autopkgtest [19:01:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 133s autopkgtest [19:01:45]: testbed release detected to be: None 134s autopkgtest [19:01:46]: updating testbed package index (apt update) 134s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 134s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 134s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 134s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 134s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 135s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 135s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 135s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 135s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 135s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 135s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 135s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 135s Fetched 1073 kB in 1s (790 kB/s) 136s Reading package lists... 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 137s Calculating upgrade... 137s Calculating upgrade... 137s The following packages were automatically installed and are no longer required: 137s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 137s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 137s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 137s linux-tools-6.11.0-8-generic 137s Use 'sudo apt autoremove' to remove them. 137s The following packages will be upgraded: 137s pinentry-curses python3-jinja2 strace 137s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Need to get 652 kB of archives. 137s After this operation, 27.6 kB of additional disk space will be used. 137s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 138s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 138s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 138s Fetched 652 kB in 1s (656 kB/s) 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 138s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 138s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 138s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 138s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 138s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 138s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 139s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 139s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 139s Setting up strace (6.13+ds-1ubuntu1) ... 139s Processing triggers for man-db (2.13.0-1) ... 139s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s Solving dependencies... 140s The following packages will be REMOVED: 140s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 140s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 140s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 140s linux-tools-6.11.0-8-generic* 140s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 140s After this operation, 167 MB disk space will be freed. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 140s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 140s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 140s Removing libpython3.12t64:s390x (3.12.9-1) ... 140s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 140s Removing libnsl2:s390x (1.3.0-3build3) ... 140s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 140s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 140s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 141s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 141s Processing triggers for libc-bin (2.41-1ubuntu1) ... 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 141s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 141s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 141s autopkgtest [19:01:53]: upgrading testbed (apt dist-upgrade and autopurge) 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 142s Entering ResolveByKeep 142s 142s Calculating upgrade... 143s The following packages will be upgraded: 143s libc-bin libc-dev-bin libc6 libc6-dev locales 143s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 143s Need to get 9512 kB of archives. 143s After this operation, 8192 B of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 144s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 144s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 146s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 147s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 150s Preconfiguring packages ... 150s Fetched 9512 kB in 7s (1271 kB/s) 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 150s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 150s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 150s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 150s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 150s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 151s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Setting up libc6:s390x (2.41-1ubuntu2) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 151s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 151s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Setting up libc-bin (2.41-1ubuntu2) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 151s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 151s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Setting up locales (2.41-1ubuntu2) ... 151s Generating locales (this might take a while)... 152s en_US.UTF-8... done 152s Generation complete. 152s Setting up libc-dev-bin (2.41-1ubuntu2) ... 152s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 152s Processing triggers for man-db (2.13.0-1) ... 153s Processing triggers for systemd (257.3-1ubuntu3) ... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Starting pkgProblemResolver with broken count: 0 154s Starting 2 pkgProblemResolver with broken count: 0 154s Done 154s Solving dependencies... 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s autopkgtest [19:02:07]: rebooting testbed after setup commands that affected boot 173s autopkgtest [19:02:25]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 175s autopkgtest [19:02:27]: @@@@@@@@@@@@@@@@@@@@ apt-source samblaster 177s Get:1 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (dsc) [2029 B] 177s Get:2 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (tar) [133 kB] 177s Get:3 http://ftpmaster.internal/ubuntu plucky/universe samblaster 0.1.26-4 (diff) [5256 B] 177s gpgv: Signature made Tue Dec 6 14:37:10 2022 UTC 177s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 177s gpgv: issuer "tille@debian.org" 177s gpgv: Can't check signature: No public key 177s dpkg-source: warning: cannot verify inline signature for ./samblaster_0.1.26-4.dsc: no acceptable signature found 177s autopkgtest [19:02:29]: testing package samblaster version 0.1.26-4 177s autopkgtest [19:02:29]: build not needed 177s autopkgtest [19:02:29]: test run-unit-test: preparing testbed 178s Reading package lists... 178s Building dependency tree... 178s Reading state information... 178s Starting pkgProblemResolver with broken count: 0 178s Starting 2 pkgProblemResolver with broken count: 0 178s Done 178s The following NEW packages will be installed: 178s libdeflate0 libhts3t64 libhtscodecs2 samblaster samtools 178s 0 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. 178s Need to get 1273 kB of archives. 178s After this operation, 2947 kB of additional disk space will be used. 178s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 178s Get:2 http://ftpmaster.internal/ubuntu plucky/universe s390x libhtscodecs2 s390x 1.6.1-2 [91.0 kB] 179s Get:3 http://ftpmaster.internal/ubuntu plucky/universe s390x libhts3t64 s390x 1.21+ds-1 [479 kB] 179s Get:4 http://ftpmaster.internal/ubuntu plucky/universe s390x samblaster s390x 0.1.26-4 [23.5 kB] 179s Get:5 http://ftpmaster.internal/ubuntu plucky/universe s390x samtools s390x 1.21-1 [633 kB] 180s Fetched 1273 kB in 2s (842 kB/s) 180s Selecting previously unselected package libdeflate0:s390x. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 180s Preparing to unpack .../libdeflate0_1.23-1_s390x.deb ... 180s Unpacking libdeflate0:s390x (1.23-1) ... 180s Selecting previously unselected package libhtscodecs2:s390x. 180s Preparing to unpack .../libhtscodecs2_1.6.1-2_s390x.deb ... 180s Unpacking libhtscodecs2:s390x (1.6.1-2) ... 180s Selecting previously unselected package libhts3t64:s390x. 180s Preparing to unpack .../libhts3t64_1.21+ds-1_s390x.deb ... 180s Unpacking libhts3t64:s390x (1.21+ds-1) ... 180s Selecting previously unselected package samblaster. 180s Preparing to unpack .../samblaster_0.1.26-4_s390x.deb ... 180s Unpacking samblaster (0.1.26-4) ... 180s Selecting previously unselected package samtools. 180s Preparing to unpack .../samtools_1.21-1_s390x.deb ... 180s Unpacking samtools (1.21-1) ... 180s Setting up libhtscodecs2:s390x (1.6.1-2) ... 180s Setting up samblaster (0.1.26-4) ... 180s Setting up libdeflate0:s390x (1.23-1) ... 180s Setting up libhts3t64:s390x (1.21+ds-1) ... 180s Setting up samtools (1.21-1) ... 180s Processing triggers for man-db (2.13.0-1) ... 181s Processing triggers for libc-bin (2.41-1ubuntu2) ... 182s autopkgtest [19:02:34]: test run-unit-test: [----------------------- 182s samblaster: Version 0.1.26 182s samblaster: Opening read.sam for read. 182s samblaster: Opening output for write. 182s samblaster: Loaded 2 header sequence entries. 182s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 182s Unknown opcode 'P' in CIGAR string: '1S2I6M1P1I1P1I4M2I' 182s samblaster: Found 2 of 12 (16.667%) total read ids are marked paired yet are unmated. 182s samblaster: Please double check that input file is read-id (QNAME) grouped. 182s samblaster: Marked 0 of 12 (0.000%) total read ids as duplicates using 3520k memory in 0.000S CPU seconds and 0S wall time. 182s PASS Test 182s autopkgtest [19:02:34]: test run-unit-test: -----------------------] 183s run-unit-test PASS 183s autopkgtest [19:02:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 183s autopkgtest [19:02:35]: @@@@@@@@@@@@@@@@@@@@ summary 183s run-unit-test PASS 188s nova [W] Using flock in prodstack6-s390x 188s flock: timeout while waiting to get lock 188s Creating nova instance adt-plucky-s390x-samblaster-20250315-185932-juju-7f2275-prod-proposed-migration-environment-20-60cc07d6-e982-43d1-bfe3-905c647dbef7 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 188s nova [W] Timed out waiting for ee6a11b9-0cd6-408a-8bb8-b915a2b40ead to get deleted.