0s autopkgtest [16:51:24]: starting date and time: 2024-11-01 16:51:24+0000
  0s autopkgtest [16:51:24]: git checkout: 6f3be7a8 Fix armhf LXD image generation for plucky
  0s autopkgtest [16:51:24]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ka7_wxwj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:python-dateutil --apt-upgrade resfinder --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=python-dateutil/2.9.0-3 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-23.secgroup --name adt-plucky-s390x-resfinder-20241101-165124-juju-7f2275-prod-proposed-migration-environment-15-85989f15-8a9e-4155-a57d-6433203288b9 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
171s autopkgtest [16:54:15]: testbed dpkg architecture: s390x
171s autopkgtest [16:54:15]: testbed apt version: 2.9.8
171s autopkgtest [16:54:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup
172s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
172s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [183 kB]
172s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2770 kB]
172s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
172s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [44.0 kB]
172s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [223 kB]
172s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [1936 kB]
173s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [32.9 kB]
173s Fetched 5269 kB in 1s (4500 kB/s)
173s Reading package lists...
175s Reading package lists...
175s Building dependency tree...
175s Reading state information...
175s Calculating upgrade...
175s The following packages will be upgraded:
175s   libevdev2 libftdi1-2 libinih1 nano python3-lazr.uri
176s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
176s Need to get 384 kB of archives.
176s After this operation, 17.4 kB of additional disk space will be used.
176s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libevdev2 s390x 1.13.3+dfsg-1 [35.9 kB]
176s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x nano s390x 8.2-1 [298 kB]
176s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libftdi1-2 s390x 1.5-7 [29.2 kB]
176s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libinih1 s390x 58-1ubuntu1 [7602 B]
176s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lazr.uri all 1.0.6-4 [13.6 kB]
176s Fetched 384 kB in 0s (966 kB/s)
176s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55483 files and directories currently installed.)
176s Preparing to unpack .../libevdev2_1.13.3+dfsg-1_s390x.deb ...
176s Unpacking libevdev2:s390x (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ...
176s Preparing to unpack .../archives/nano_8.2-1_s390x.deb ...
176s Unpacking nano (8.2-1) over (8.1-1) ...
176s Preparing to unpack .../libftdi1-2_1.5-7_s390x.deb ...
176s Unpacking libftdi1-2:s390x (1.5-7) over (1.5-6build5) ...
176s Preparing to unpack .../libinih1_58-1ubuntu1_s390x.deb ...
176s Unpacking libinih1:s390x (58-1ubuntu1) over (55-1ubuntu2) ...
176s Preparing to unpack .../python3-lazr.uri_1.0.6-4_all.deb ...
176s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ...
176s Setting up libinih1:s390x (58-1ubuntu1) ...
176s Setting up python3-lazr.uri (1.0.6-4) ...
176s Setting up libftdi1-2:s390x (1.5-7) ...
176s Setting up nano (8.2-1) ...
176s Setting up libevdev2:s390x (1.13.3+dfsg-1) ...
176s Processing triggers for man-db (2.12.1-3) ...
177s Processing triggers for install-info (7.1.1-1) ...
177s Processing triggers for libc-bin (2.40-1ubuntu3) ...
177s Reading package lists...
177s Building dependency tree...
177s Reading state information...
178s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
178s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
178s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
178s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
178s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
179s Reading package lists...
179s Reading package lists...
179s Building dependency tree...
179s Reading state information...
179s Calculating upgrade...
179s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
179s Reading package lists...
179s Building dependency tree...
179s Reading state information...
180s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
182s autopkgtest [16:54:26]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024
182s autopkgtest [16:54:26]: @@@@@@@@@@@@@@@@@@@@ apt-source resfinder
184s Get:1 http://ftpmaster.internal/ubuntu plucky/universe resfinder 4.4.2-1 (dsc) [2539 B]
184s Get:2 http://ftpmaster.internal/ubuntu plucky/universe resfinder 4.4.2-1 (tar) [89.1 kB]
184s Get:3 http://ftpmaster.internal/ubuntu plucky/universe resfinder 4.4.2-1 (tar) [359 kB]
184s Get:4 http://ftpmaster.internal/ubuntu plucky/universe resfinder 4.4.2-1 (diff) [8332 B]
184s gpgv: Signature made Tue Jan 16 07:05:55 2024 UTC
184s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
184s gpgv:                issuer "tille@debian.org"
184s gpgv: Can't check signature: No public key
184s dpkg-source: warning: cannot verify inline signature for ./resfinder_4.4.2-1.dsc: no acceptable signature found
184s autopkgtest [16:54:28]: testing package resfinder version 4.4.2-1
185s autopkgtest [16:54:29]: build not needed
186s autopkgtest [16:54:30]: test run-unit-test: preparing testbed
187s Reading package lists...
187s Building dependency tree...
187s Reading state information...
187s Starting pkgProblemResolver with broken count: 0
187s Starting 2 pkgProblemResolver with broken count: 0
187s Done
188s The following additional packages will be installed:
188s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 git
188s   git-man kma libblas3 libcairo2 libdeflate0 liberror-perl libfontconfig1
188s   libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
188s   libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2
188s   libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
188s   libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2
188s   libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 ncbi-blast+
188s   ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo python3-cgecore
188s   python3-cgelib python3-dateutil python3-freetype python3-git python3-gitdb
188s   python3-numpy python3-pandas python3-pandas-lib python3-pil
188s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate
188s   python3-tz resfinder resfinder-db resfinder-example sgml-base w3c-sgml-lib
188s   x11-common xfonts-encodings xfonts-utils xml-core
188s Suggested packages:
188s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre git-daemon-run
188s   | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs
188s   git-mediawiki git-svn liblcms2-utils python3-tk bwa clustalo clustalw
188s   dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons
188s   python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib
188s   python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-git-doc
188s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc
188s   python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools
188s   python-reportlab-doc rl-accel rl-renderpm sgml-base-doc debhelper
188s Recommended packages:
188s   python-biopython-doc python3-scipy python3-matplotlib python3-bottleneck
188s   python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib
188s   python3-lxml python3-tables python3-olefile fonts-dejavu-extra
188s The following NEW packages will be installed:
188s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono
188s   fonts-urw-base35 git git-man kma libblas3 libcairo2 libdeflate0
188s   liberror-perl libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1
188s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
188s   liblapack3 liblcms2-2 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64
188s   libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7
188s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 ncbi-blast+
188s   ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo python3-cgecore
188s   python3-cgelib python3-dateutil python3-freetype python3-git python3-gitdb
188s   python3-numpy python3-pandas python3-pandas-lib python3-pil
188s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate
188s   python3-tz resfinder resfinder-db resfinder-example sgml-base w3c-sgml-lib
188s   x11-common xfonts-encodings xfonts-utils xml-core
188s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
188s Need to get 73.3 MB/73.3 MB of archives.
188s After this operation, 341 MB of additional disk space will be used.
188s Get:1 /tmp/autopkgtest.bzABCk/1-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [748 B]
188s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x sgml-base all 1.31 [11.4 kB]
188s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
188s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
188s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB]
188s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
188s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
188s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
188s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB]
188s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB]
189s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB]
189s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x liberror-perl all 0.17029-2 [25.6 kB]
189s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x git-man all 1:2.45.2-1ubuntu1 [1122 kB]
189s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x git s390x 1:2.45.2-1ubuntu1 [4071 kB]
189s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x kma s390x 1.4.14-2 [257 kB]
189s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
189s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB]
189s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.42.2-1build1 [206 kB]
189s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
189s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
189s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
189s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
189s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.21-1 [46.1 kB]
189s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-7ubuntu1 [587 kB]
189s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-7ubuntu1 [151 kB]
189s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
189s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 9.0.0-1 [533 kB]
189s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB]
189s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB]
189s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
189s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
189s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.14-2build1 [172 kB]
189s Get:33 http://ftpmaster.internal/ubuntu plucky/universe s390x libmbedcrypto7t64 s390x 2.28.8-1 [219 kB]
189s Get:34 http://ftpmaster.internal/ubuntu plucky/universe s390x libmbedx509-1t64 s390x 2.28.8-1 [46.2 kB]
189s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x libmbedtls14t64 s390x 2.28.8-1 [84.7 kB]
189s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB]
189s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB]
189s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
189s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB]
189s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
189s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB]
189s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB]
189s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x ncbi-data all 6.1.20170106+dfsg2-3 [3966 kB]
189s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x ncbi-blast+ s390x 2.16.0+ds-6 [15.2 MB]
190s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x ncbi-blast+-legacy all 2.16.0+ds-6 [4990 B]
190s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
190s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB]
190s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB]
190s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cairo s390x 1.26.1-2 [119 kB]
190s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freetype all 2.4.0-2 [81.3 kB]
190s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B]
190s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-reportlab all 4.2.2-1 [1130 kB]
190s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x xml-core all 0.19 [20.3 kB]
190s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x w3c-sgml-lib all 1.3-3 [280 kB]
190s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-biopython s390x 1.83+dfsg1-3 [1680 kB]
190s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cgecore all 1.5.6+ds-1 [28.8 kB]
190s Get:57 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-dateutil all 2.9.0-3 [80.2 kB]
190s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-smmap all 6.0.0-1 [20.5 kB]
190s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-gitdb all 4.0.11-1 [46.2 kB]
190s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-git all 3.1.37-3 [138 kB]
190s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB]
190s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.2+dfsg-4 [4680 kB]
190s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.2+dfsg-4 [3111 kB]
190s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cgelib all 0.7.3-3 [48.2 kB]
190s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tabulate all 0.9.0-1 [45.3 kB]
190s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x resfinder-db all 0.0+git20220524.fa32d9a-1 [11.3 MB]
191s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x resfinder all 4.4.2-1 [66.5 kB]
191s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x resfinder-example all 4.4.2-1 [572 kB]
191s Fetched 73.3 MB in 3s (23.1 MB/s)
191s Selecting previously unselected package sgml-base.
191s (Reading database ... 
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(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 55483 files and directories currently installed.)
191s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
191s Unpacking sgml-base (1.31) ...
191s Selecting previously unselected package fonts-dejavu-mono.
191s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
191s Unpacking fonts-dejavu-mono (2.37-8) ...
191s Selecting previously unselected package fonts-dejavu-core.
191s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
191s Unpacking fonts-dejavu-core (2.37-8) ...
191s Selecting previously unselected package libfontenc1:s390x.
191s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_s390x.deb ...
191s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ...
191s Selecting previously unselected package libfreetype6:s390x.
191s Preparing to unpack .../04-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
191s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
191s Selecting previously unselected package x11-common.
191s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ...
191s Unpacking x11-common (1:7.7+23ubuntu3) ...
191s Selecting previously unselected package xfonts-encodings.
191s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
191s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
191s Selecting previously unselected package xfonts-utils.
191s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_s390x.deb ...
191s Unpacking xfonts-utils (1:7.7+7) ...
191s Selecting previously unselected package fonts-urw-base35.
191s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ...
191s Unpacking fonts-urw-base35 (20200910-8) ...
191s Selecting previously unselected package fontconfig-config.
191s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ...
192s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
192s Selecting previously unselected package liberror-perl.
192s Preparing to unpack .../10-liberror-perl_0.17029-2_all.deb ...
192s Unpacking liberror-perl (0.17029-2) ...
192s Selecting previously unselected package git-man.
192s Preparing to unpack .../11-git-man_1%3a2.45.2-1ubuntu1_all.deb ...
192s Unpacking git-man (1:2.45.2-1ubuntu1) ...
192s Selecting previously unselected package git.
192s Preparing to unpack .../12-git_1%3a2.45.2-1ubuntu1_s390x.deb ...
192s Unpacking git (1:2.45.2-1ubuntu1) ...
192s Selecting previously unselected package kma.
192s Preparing to unpack .../13-kma_1.4.14-2_s390x.deb ...
192s Unpacking kma (1.4.14-2) ...
192s Selecting previously unselected package libblas3:s390x.
192s Preparing to unpack .../14-libblas3_3.12.0-3build2_s390x.deb ...
192s Unpacking libblas3:s390x (3.12.0-3build2) ...
192s Selecting previously unselected package libfontconfig1:s390x.
192s Preparing to unpack .../15-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ...
192s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
192s Selecting previously unselected package libpixman-1-0:s390x.
192s Preparing to unpack .../16-libpixman-1-0_0.42.2-1build1_s390x.deb ...
192s Unpacking libpixman-1-0:s390x (0.42.2-1build1) ...
192s Selecting previously unselected package libxcb-render0:s390x.
192s Preparing to unpack .../17-libxcb-render0_1.17.0-2_s390x.deb ...
192s Unpacking libxcb-render0:s390x (1.17.0-2) ...
192s Selecting previously unselected package libxcb-shm0:s390x.
192s Preparing to unpack .../18-libxcb-shm0_1.17.0-2_s390x.deb ...
192s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
192s Selecting previously unselected package libxrender1:s390x.
192s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
192s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
192s Selecting previously unselected package libcairo2:s390x.
192s Preparing to unpack .../20-libcairo2_1.18.2-2_s390x.deb ...
192s Unpacking libcairo2:s390x (1.18.2-2) ...
192s Selecting previously unselected package libdeflate0:s390x.
192s Preparing to unpack .../21-libdeflate0_1.21-1_s390x.deb ...
192s Unpacking libdeflate0:s390x (1.21-1) ...
192s Selecting previously unselected package libgfortran5:s390x.
192s Preparing to unpack .../22-libgfortran5_14.2.0-7ubuntu1_s390x.deb ...
192s Unpacking libgfortran5:s390x (14.2.0-7ubuntu1) ...
192s Selecting previously unselected package libgomp1:s390x.
192s Preparing to unpack .../23-libgomp1_14.2.0-7ubuntu1_s390x.deb ...
192s Unpacking libgomp1:s390x (14.2.0-7ubuntu1) ...
192s Selecting previously unselected package libgraphite2-3:s390x.
192s Preparing to unpack .../24-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
192s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
192s Selecting previously unselected package libharfbuzz0b:s390x.
192s Preparing to unpack .../25-libharfbuzz0b_9.0.0-1_s390x.deb ...
192s Unpacking libharfbuzz0b:s390x (9.0.0-1) ...
192s Selecting previously unselected package libimagequant0:s390x.
192s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_s390x.deb ...
192s Unpacking libimagequant0:s390x (2.18.0-1build1) ...
192s Selecting previously unselected package libjpeg-turbo8:s390x.
192s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ...
192s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
192s Selecting previously unselected package libjpeg8:s390x.
192s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_s390x.deb ...
192s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
192s Selecting previously unselected package liblapack3:s390x.
192s Preparing to unpack .../29-liblapack3_3.12.0-3build2_s390x.deb ...
192s Unpacking liblapack3:s390x (3.12.0-3build2) ...
192s Selecting previously unselected package liblcms2-2:s390x.
192s Preparing to unpack .../30-liblcms2-2_2.14-2build1_s390x.deb ...
192s Unpacking liblcms2-2:s390x (2.14-2build1) ...
192s Selecting previously unselected package libmbedcrypto7t64:s390x.
192s Preparing to unpack .../31-libmbedcrypto7t64_2.28.8-1_s390x.deb ...
192s Unpacking libmbedcrypto7t64:s390x (2.28.8-1) ...
192s Selecting previously unselected package libmbedx509-1t64:s390x.
192s Preparing to unpack .../32-libmbedx509-1t64_2.28.8-1_s390x.deb ...
192s Unpacking libmbedx509-1t64:s390x (2.28.8-1) ...
192s Selecting previously unselected package libmbedtls14t64:s390x.
192s Preparing to unpack .../33-libmbedtls14t64_2.28.8-1_s390x.deb ...
192s Unpacking libmbedtls14t64:s390x (2.28.8-1) ...
192s Selecting previously unselected package libraqm0:s390x.
192s Preparing to unpack .../34-libraqm0_0.10.1-1build1_s390x.deb ...
192s Unpacking libraqm0:s390x (0.10.1-1build1) ...
192s Selecting previously unselected package libsharpyuv0:s390x.
192s Preparing to unpack .../35-libsharpyuv0_1.4.0-0.1_s390x.deb ...
192s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ...
192s Selecting previously unselected package libjbig0:s390x.
192s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
192s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
192s Selecting previously unselected package libwebp7:s390x.
192s Preparing to unpack .../37-libwebp7_1.4.0-0.1_s390x.deb ...
192s Unpacking libwebp7:s390x (1.4.0-0.1) ...
192s Selecting previously unselected package libtiff6:s390x.
192s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
192s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
192s Selecting previously unselected package libwebpdemux2:s390x.
192s Preparing to unpack .../39-libwebpdemux2_1.4.0-0.1_s390x.deb ...
192s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ...
192s Selecting previously unselected package libwebpmux3:s390x.
192s Preparing to unpack .../40-libwebpmux3_1.4.0-0.1_s390x.deb ...
192s Unpacking libwebpmux3:s390x (1.4.0-0.1) ...
192s Selecting previously unselected package ncbi-data.
192s Preparing to unpack .../41-ncbi-data_6.1.20170106+dfsg2-3_all.deb ...
192s Unpacking ncbi-data (6.1.20170106+dfsg2-3) ...
192s Selecting previously unselected package ncbi-blast+.
192s Preparing to unpack .../42-ncbi-blast+_2.16.0+ds-6_s390x.deb ...
192s Unpacking ncbi-blast+ (2.16.0+ds-6) ...
192s Selecting previously unselected package ncbi-blast+-legacy.
192s Preparing to unpack .../43-ncbi-blast+-legacy_2.16.0+ds-6_all.deb ...
192s Unpacking ncbi-blast+-legacy (2.16.0+ds-6) ...
192s Selecting previously unselected package python3-numpy.
192s Preparing to unpack .../44-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
192s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
193s Selecting previously unselected package libopenjp2-7:s390x.
193s Preparing to unpack .../45-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ...
193s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ...
193s Selecting previously unselected package python3-pil:s390x.
193s Preparing to unpack .../46-python3-pil_10.4.0-1ubuntu1_s390x.deb ...
193s Unpacking python3-pil:s390x (10.4.0-1ubuntu1) ...
193s Selecting previously unselected package python3-cairo.
193s Preparing to unpack .../47-python3-cairo_1.26.1-2_s390x.deb ...
193s Unpacking python3-cairo (1.26.1-2) ...
193s Selecting previously unselected package python3-freetype.
193s Preparing to unpack .../48-python3-freetype_2.4.0-2_all.deb ...
193s Unpacking python3-freetype (2.4.0-2) ...
193s Selecting previously unselected package python3-rlpycairo.
193s Preparing to unpack .../49-python3-rlpycairo_0.3.0-3_all.deb ...
193s Unpacking python3-rlpycairo (0.3.0-3) ...
193s Selecting previously unselected package python3-reportlab.
193s Preparing to unpack .../50-python3-reportlab_4.2.2-1_all.deb ...
193s Unpacking python3-reportlab (4.2.2-1) ...
193s Selecting previously unselected package xml-core.
193s Preparing to unpack .../51-xml-core_0.19_all.deb ...
193s Unpacking xml-core (0.19) ...
193s Selecting previously unselected package w3c-sgml-lib.
193s Preparing to unpack .../52-w3c-sgml-lib_1.3-3_all.deb ...
193s Unpacking w3c-sgml-lib (1.3-3) ...
193s Selecting previously unselected package python3-biopython.
193s Preparing to unpack .../53-python3-biopython_1.83+dfsg1-3_s390x.deb ...
193s Unpacking python3-biopython (1.83+dfsg1-3) ...
193s Selecting previously unselected package python3-cgecore.
193s Preparing to unpack .../54-python3-cgecore_1.5.6+ds-1_all.deb ...
193s Unpacking python3-cgecore (1.5.6+ds-1) ...
193s Selecting previously unselected package python3-dateutil.
193s Preparing to unpack .../55-python3-dateutil_2.9.0-3_all.deb ...
193s Unpacking python3-dateutil (2.9.0-3) ...
193s Selecting previously unselected package python3-smmap.
193s Preparing to unpack .../56-python3-smmap_6.0.0-1_all.deb ...
193s Unpacking python3-smmap (6.0.0-1) ...
193s Selecting previously unselected package python3-gitdb.
193s Preparing to unpack .../57-python3-gitdb_4.0.11-1_all.deb ...
193s Unpacking python3-gitdb (4.0.11-1) ...
193s Selecting previously unselected package python3-git.
193s Preparing to unpack .../58-python3-git_3.1.37-3_all.deb ...
193s Unpacking python3-git (3.1.37-3) ...
193s Selecting previously unselected package python3-tz.
193s Preparing to unpack .../59-python3-tz_2024.1-2_all.deb ...
193s Unpacking python3-tz (2024.1-2) ...
193s Selecting previously unselected package python3-pandas-lib:s390x.
193s Preparing to unpack .../60-python3-pandas-lib_2.2.2+dfsg-4_s390x.deb ...
193s Unpacking python3-pandas-lib:s390x (2.2.2+dfsg-4) ...
193s Selecting previously unselected package python3-pandas.
193s Preparing to unpack .../61-python3-pandas_2.2.2+dfsg-4_all.deb ...
193s Unpacking python3-pandas (2.2.2+dfsg-4) ...
193s Selecting previously unselected package python3-cgelib.
193s Preparing to unpack .../62-python3-cgelib_0.7.3-3_all.deb ...
193s Unpacking python3-cgelib (0.7.3-3) ...
193s Selecting previously unselected package python3-tabulate.
193s Preparing to unpack .../63-python3-tabulate_0.9.0-1_all.deb ...
193s Unpacking python3-tabulate (0.9.0-1) ...
193s Selecting previously unselected package resfinder-db.
193s Preparing to unpack .../64-resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ...
193s Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) ...
194s Selecting previously unselected package resfinder.
194s Preparing to unpack .../65-resfinder_4.4.2-1_all.deb ...
194s Unpacking resfinder (4.4.2-1) ...
194s Selecting previously unselected package resfinder-example.
194s Preparing to unpack .../66-resfinder-example_4.4.2-1_all.deb ...
194s Unpacking resfinder-example (4.4.2-1) ...
194s Selecting previously unselected package autopkgtest-satdep.
194s Preparing to unpack .../67-1-autopkgtest-satdep.deb ...
194s Unpacking autopkgtest-satdep (0) ...
194s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
194s Setting up liblcms2-2:s390x (2.14-2build1) ...
194s Setting up ncbi-data (6.1.20170106+dfsg2-3) ...
194s Setting up libpixman-1-0:s390x (0.42.2-1build1) ...
194s Setting up libsharpyuv0:s390x (1.4.0-0.1) ...
194s Setting up libmbedcrypto7t64:s390x (2.28.8-1) ...
194s Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ...
194s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
194s Setting up libxcb-render0:s390x (1.17.0-2) ...
194s Setting up x11-common (1:7.7+23ubuntu3) ...
194s Setting up libdeflate0:s390x (1.21-1) ...
194s Setting up python3-tabulate (0.9.0-1) ...
194s Setting up libxcb-shm0:s390x (1.17.0-2) ...
194s Setting up libgomp1:s390x (14.2.0-7ubuntu1) ...
194s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
194s Setting up python3-tz (2024.1-2) ...
194s Setting up liberror-perl (0.17029-2) ...
194s Setting up libfontenc1:s390x (1:1.1.8-1build1) ...
194s Setting up libblas3:s390x (3.12.0-3build2) ...
194s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
194s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
194s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
194s Setting up libimagequant0:s390x (2.18.0-1build1) ...
194s Setting up fonts-dejavu-mono (2.37-8) ...
194s Setting up fonts-dejavu-core (2.37-8) ...
194s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
194s Setting up libgfortran5:s390x (14.2.0-7ubuntu1) ...
194s Setting up libwebp7:s390x (1.4.0-0.1) ...
194s Setting up kma (1.4.14-2) ...
194s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ...
194s Setting up git-man (1:2.45.2-1ubuntu1) ...
194s Setting up libharfbuzz0b:s390x (9.0.0-1) ...
194s Setting up python3-dateutil (2.9.0-3) ...
194s Setting up sgml-base (1.31) ...
194s Setting up resfinder-example (4.4.2-1) ...
194s Setting up libwebpmux3:s390x (1.4.0-0.1) ...
194s Setting up python3-smmap (6.0.0-1) ...
194s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
194s Setting up liblapack3:s390x (3.12.0-3build2) ...
194s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
194s Setting up libmbedx509-1t64:s390x (2.28.8-1) ...
194s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
194s Setting up libwebpdemux2:s390x (1.4.0-0.1) ...
194s Setting up python3-gitdb (4.0.11-1) ...
194s Setting up python3-freetype (2.4.0-2) ...
195s Setting up xfonts-utils (1:7.7+7) ...
195s Setting up libraqm0:s390x (0.10.1-1build1) ...
195s Setting up git (1:2.45.2-1ubuntu1) ...
195s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
197s Setting up libmbedtls14t64:s390x (2.28.8-1) ...
197s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
197s Setting up xml-core (0.19) ...
197s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
197s Setting up python3-pandas-lib:s390x (2.2.2+dfsg-4) ...
197s Setting up fonts-urw-base35 (20200910-8) ...
197s Setting up libcairo2:s390x (1.18.2-2) ...
197s Setting up ncbi-blast+ (2.16.0+ds-6) ...
197s Setting up python3-pil:s390x (10.4.0-1ubuntu1) ...
197s Setting up python3-pandas (2.2.2+dfsg-4) ...
203s Setting up python3-git (3.1.37-3) ...
203s Setting up ncbi-blast+-legacy (2.16.0+ds-6) ...
203s Setting up python3-cairo (1.26.1-2) ...
203s Setting up python3-cgelib (0.7.3-3) ...
203s Setting up python3-rlpycairo (0.3.0-3) ...
203s Setting up python3-reportlab (4.2.2-1) ...
204s Processing triggers for libc-bin (2.40-1ubuntu3) ...
204s Processing triggers for man-db (2.12.1-3) ...
205s Processing triggers for sgml-base (1.31) ...
205s Setting up w3c-sgml-lib (1.3-3) ...
225s Setting up python3-biopython (1.83+dfsg1-3) ...
226s Setting up python3-cgecore (1.5.6+ds-1) ...
226s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w'
226s   start = re.search("^-*(\w+)", align_query).start(1)
226s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w'
226s   end = re.search("\w+(-*)$", align_query).start(1)
226s /usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{'
226s   """
226s /usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w'
226s   src = re.sub('[^\w/\-\.\*]', '', src)
226s /usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w'
226s   dst = re.sub('[^\w/\-\.\*]', '', dst)
226s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
226s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
226s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
226s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
226s /usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w'
226s   invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_))
226s /usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w'
226s   src = re.sub('[^\w/\-\.\*]', '', src)
226s /usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w'
226s   dst = re.sub('[^\w/\-\.\*]', '', dst)
226s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
226s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
226s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
226s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
226s Setting up resfinder (4.4.2-1) ...
227s Setting up autopkgtest-satdep (0) ...
229s (Reading database ... 62464 files and directories currently installed.)
229s Removing autopkgtest-satdep (0) ...
230s autopkgtest [16:55:14]: test run-unit-test: [-----------------------
230s Indexing files as needed
246s ['INSTALL.py']
247s ['INSTALL.py']
247s Running tests
251s ....
251s ----------------------------------------------------------------------
251s Ran 4 tests in 4.015s
251s 
251s OK
251s Cleanup
251s PASS
252s autopkgtest [16:55:36]: test run-unit-test: -----------------------]
252s autopkgtest [16:55:36]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
252s run-unit-test        PASS
252s autopkgtest [16:55:36]: test version-test: preparing testbed
367s autopkgtest [16:57:31]: testbed dpkg architecture: s390x
367s autopkgtest [16:57:31]: testbed apt version: 2.9.8
367s autopkgtest [16:57:31]: @@@@@@@@@@@@@@@@@@@@ test bed setup
368s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [73.9 kB]
369s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [7016 B]
369s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [2770 kB]
369s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [44.0 kB]
369s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [183 kB]
369s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [223 kB]
369s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [1936 kB]
369s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [32.9 kB]
370s Fetched 5269 kB in 1s (4171 kB/s)
370s Reading package lists...
371s Reading package lists...
372s Building dependency tree...
372s Reading state information...
372s Calculating upgrade...
372s The following packages will be upgraded:
372s   libevdev2 libftdi1-2 libinih1 nano python3-lazr.uri
372s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
372s Need to get 384 kB of archives.
372s After this operation, 17.4 kB of additional disk space will be used.
372s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libevdev2 s390x 1.13.3+dfsg-1 [35.9 kB]
372s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x nano s390x 8.2-1 [298 kB]
372s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libftdi1-2 s390x 1.5-7 [29.2 kB]
372s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x libinih1 s390x 58-1ubuntu1 [7602 B]
372s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x python3-lazr.uri all 1.0.6-4 [13.6 kB]
372s Fetched 384 kB in 0s (929 kB/s)
373s (Reading database ... 
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(Reading database ... 55483 files and directories currently installed.)
373s Preparing to unpack .../libevdev2_1.13.3+dfsg-1_s390x.deb ...
373s Unpacking libevdev2:s390x (1.13.3+dfsg-1) over (1.13.2+dfsg-1) ...
373s Preparing to unpack .../archives/nano_8.2-1_s390x.deb ...
373s Unpacking nano (8.2-1) over (8.1-1) ...
373s Preparing to unpack .../libftdi1-2_1.5-7_s390x.deb ...
373s Unpacking libftdi1-2:s390x (1.5-7) over (1.5-6build5) ...
373s Preparing to unpack .../libinih1_58-1ubuntu1_s390x.deb ...
373s Unpacking libinih1:s390x (58-1ubuntu1) over (55-1ubuntu2) ...
373s Preparing to unpack .../python3-lazr.uri_1.0.6-4_all.deb ...
373s Unpacking python3-lazr.uri (1.0.6-4) over (1.0.6-3) ...
373s Setting up libinih1:s390x (58-1ubuntu1) ...
373s Setting up python3-lazr.uri (1.0.6-4) ...
373s Setting up libftdi1-2:s390x (1.5-7) ...
373s Setting up nano (8.2-1) ...
373s Setting up libevdev2:s390x (1.13.3+dfsg-1) ...
373s Processing triggers for man-db (2.12.1-3) ...
373s Processing triggers for install-info (7.1.1-1) ...
373s Processing triggers for libc-bin (2.40-1ubuntu3) ...
373s Reading package lists...
373s Building dependency tree...
373s Reading state information...
374s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
374s Hit:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease
374s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
374s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
374s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
376s Reading package lists...
376s Reading package lists...
376s Building dependency tree...
376s Reading state information...
376s Calculating upgrade...
376s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
376s Reading package lists...
376s Building dependency tree...
376s Reading state information...
376s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
379s Reading package lists...
379s Building dependency tree...
379s Reading state information...
379s Starting pkgProblemResolver with broken count: 0
379s Starting 2 pkgProblemResolver with broken count: 0
379s Done
380s The following additional packages will be installed:
380s   fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-urw-base35 git
380s   git-man kma libblas3 libcairo2 libdeflate0 liberror-perl libfontconfig1
380s   libfontenc1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
380s   libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2
380s   libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libopenjp2-7
380s   libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7 libwebpdemux2
380s   libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 ncbi-blast+
380s   ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo python3-cgecore
380s   python3-cgelib python3-dateutil python3-freetype python3-git python3-gitdb
380s   python3-numpy python3-pandas python3-pandas-lib python3-pil
380s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate
380s   python3-tz resfinder resfinder-db resfinder-example sgml-base w3c-sgml-lib
380s   x11-common xfonts-encodings xfonts-utils xml-core
380s Suggested packages:
380s   fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre git-daemon-run
380s   | git-daemon-sysvinit git-doc git-email git-gui gitk gitweb git-cvs
380s   git-mediawiki git-svn liblcms2-utils python3-tk bwa clustalo clustalw
380s   dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons
380s   python3-mysqldb python3-matplotlib python3-mmtf python3-rdflib
380s   python3-psycopg2 python3-scipy raxml samtools t-coffee wise python-git-doc
380s   gcc gfortran python-numpy-doc python3-dev python3-pytest python-pandas-doc
380s   python3-statsmodels python-pil-doc pdf-viewer python3-egenix-mxtexttools
380s   python-reportlab-doc rl-accel rl-renderpm sgml-base-doc debhelper
380s Recommended packages:
380s   python-biopython-doc python3-scipy python3-matplotlib python3-bottleneck
380s   python3-numexpr python3-odf python3-openpyxl python3-bs4 python3-html5lib
380s   python3-lxml python3-tables python3-olefile fonts-dejavu-extra
380s The following NEW packages will be installed:
380s   autopkgtest-satdep fontconfig-config fonts-dejavu-core fonts-dejavu-mono
380s   fonts-urw-base35 git git-man kma libblas3 libcairo2 libdeflate0
380s   liberror-perl libfontconfig1 libfontenc1 libfreetype6 libgfortran5 libgomp1
380s   libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8
380s   liblapack3 liblcms2-2 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64
380s   libopenjp2-7 libpixman-1-0 libraqm0 libsharpyuv0 libtiff6 libwebp7
380s   libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxrender1 ncbi-blast+
380s   ncbi-blast+-legacy ncbi-data python3-biopython python3-cairo python3-cgecore
380s   python3-cgelib python3-dateutil python3-freetype python3-git python3-gitdb
380s   python3-numpy python3-pandas python3-pandas-lib python3-pil
380s   python3-reportlab python3-rlpycairo python3-smmap python3-tabulate
380s   python3-tz resfinder resfinder-db resfinder-example sgml-base w3c-sgml-lib
380s   x11-common xfonts-encodings xfonts-utils xml-core
380s 0 upgraded, 68 newly installed, 0 to remove and 0 not upgraded.
380s Need to get 73.3 MB/73.3 MB of archives.
380s After this operation, 341 MB of additional disk space will be used.
380s Get:1 /tmp/autopkgtest.bzABCk/2-autopkgtest-satdep.deb autopkgtest-satdep s390x 0 [712 B]
380s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x sgml-base all 1.31 [11.4 kB]
380s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
380s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
380s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontenc1 s390x 1:1.1.8-1build1 [14.8 kB]
380s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
380s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
380s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB]
380s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x xfonts-utils s390x 1:7.7+7 [101 kB]
380s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-urw-base35 all 20200910-8 [11.0 MB]
381s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB]
381s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x liberror-perl all 0.17029-2 [25.6 kB]
381s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x git-man all 1:2.45.2-1ubuntu1 [1122 kB]
381s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x git s390x 1:2.45.2-1ubuntu1 [4071 kB]
381s Get:15 http://ftpmaster.internal/ubuntu plucky/universe s390x kma s390x 1.4.14-2 [257 kB]
381s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-3build2 [238 kB]
381s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB]
381s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.42.2-1build1 [206 kB]
381s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
381s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
381s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
381s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
381s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.21-1 [46.1 kB]
381s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-7ubuntu1 [587 kB]
381s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-7ubuntu1 [151 kB]
381s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
381s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 9.0.0-1 [533 kB]
381s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libimagequant0 s390x 2.18.0-1build1 [43.3 kB]
381s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-2ubuntu2 [150 kB]
381s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
381s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-3build2 [2953 kB]
381s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.14-2build1 [172 kB]
381s Get:33 http://ftpmaster.internal/ubuntu plucky/universe s390x libmbedcrypto7t64 s390x 2.28.8-1 [219 kB]
381s Get:34 http://ftpmaster.internal/ubuntu plucky/universe s390x libmbedx509-1t64 s390x 2.28.8-1 [46.2 kB]
381s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x libmbedtls14t64 s390x 2.28.8-1 [84.7 kB]
381s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libraqm0 s390x 0.10.1-1build1 [16.2 kB]
381s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.4.0-0.1 [16.2 kB]
381s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
381s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.4.0-0.1 [204 kB]
381s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
381s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.4.0-0.1 [12.2 kB]
381s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.4.0-0.1 [25.3 kB]
381s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x ncbi-data all 6.1.20170106+dfsg2-3 [3966 kB]
381s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x ncbi-blast+ s390x 2.16.0+ds-6 [15.2 MB]
382s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x ncbi-blast+-legacy all 2.16.0+ds-6 [4990 B]
382s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x python3-numpy s390x 1:1.26.4+ds-11build1 [4113 kB]
382s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.0-2ubuntu1 [208 kB]
382s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x python3-pil s390x 10.4.0-1ubuntu1 [492 kB]
382s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x python3-cairo s390x 1.26.1-2 [119 kB]
382s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-freetype all 2.4.0-2 [81.3 kB]
382s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-rlpycairo all 0.3.0-3 [9130 B]
382s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-reportlab all 4.2.2-1 [1130 kB]
382s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x xml-core all 0.19 [20.3 kB]
382s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x w3c-sgml-lib all 1.3-3 [280 kB]
382s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-biopython s390x 1.83+dfsg1-3 [1680 kB]
382s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cgecore all 1.5.6+ds-1 [28.8 kB]
382s Get:57 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x python3-dateutil all 2.9.0-3 [80.2 kB]
382s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-smmap all 6.0.0-1 [20.5 kB]
382s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-gitdb all 4.0.11-1 [46.2 kB]
382s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-git all 3.1.37-3 [138 kB]
382s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tz all 2024.1-2 [31.4 kB]
382s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas-lib s390x 2.2.2+dfsg-4 [4680 kB]
382s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-pandas all 2.2.2+dfsg-4 [3111 kB]
382s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x python3-cgelib all 0.7.3-3 [48.2 kB]
382s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x python3-tabulate all 0.9.0-1 [45.3 kB]
382s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x resfinder-db all 0.0+git20220524.fa32d9a-1 [11.3 MB]
383s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x resfinder all 4.4.2-1 [66.5 kB]
383s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x resfinder-example all 4.4.2-1 [572 kB]
383s Fetched 73.3 MB in 3s (23.5 MB/s)
383s Selecting previously unselected package sgml-base.
383s (Reading database ... 
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(Reading database ... 55483 files and directories currently installed.)
383s Preparing to unpack .../00-sgml-base_1.31_all.deb ...
383s Unpacking sgml-base (1.31) ...
383s Selecting previously unselected package fonts-dejavu-mono.
383s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
383s Unpacking fonts-dejavu-mono (2.37-8) ...
383s Selecting previously unselected package fonts-dejavu-core.
383s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
383s Unpacking fonts-dejavu-core (2.37-8) ...
383s Selecting previously unselected package libfontenc1:s390x.
383s Preparing to unpack .../03-libfontenc1_1%3a1.1.8-1build1_s390x.deb ...
383s Unpacking libfontenc1:s390x (1:1.1.8-1build1) ...
383s Selecting previously unselected package libfreetype6:s390x.
383s Preparing to unpack .../04-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
383s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
383s Selecting previously unselected package x11-common.
383s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu3_all.deb ...
383s Unpacking x11-common (1:7.7+23ubuntu3) ...
383s Selecting previously unselected package xfonts-encodings.
383s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ...
383s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ...
383s Selecting previously unselected package xfonts-utils.
383s Preparing to unpack .../07-xfonts-utils_1%3a7.7+7_s390x.deb ...
383s Unpacking xfonts-utils (1:7.7+7) ...
383s Selecting previously unselected package fonts-urw-base35.
383s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ...
383s Unpacking fonts-urw-base35 (20200910-8) ...
383s Selecting previously unselected package fontconfig-config.
383s Preparing to unpack .../09-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ...
383s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ...
383s Selecting previously unselected package liberror-perl.
383s Preparing to unpack .../10-liberror-perl_0.17029-2_all.deb ...
383s Unpacking liberror-perl (0.17029-2) ...
383s Selecting previously unselected package git-man.
383s Preparing to unpack .../11-git-man_1%3a2.45.2-1ubuntu1_all.deb ...
383s Unpacking git-man (1:2.45.2-1ubuntu1) ...
383s Selecting previously unselected package git.
383s Preparing to unpack .../12-git_1%3a2.45.2-1ubuntu1_s390x.deb ...
383s Unpacking git (1:2.45.2-1ubuntu1) ...
384s Selecting previously unselected package kma.
384s Preparing to unpack .../13-kma_1.4.14-2_s390x.deb ...
384s Unpacking kma (1.4.14-2) ...
384s Selecting previously unselected package libblas3:s390x.
384s Preparing to unpack .../14-libblas3_3.12.0-3build2_s390x.deb ...
384s Unpacking libblas3:s390x (3.12.0-3build2) ...
384s Selecting previously unselected package libfontconfig1:s390x.
384s Preparing to unpack .../15-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ...
384s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
384s Selecting previously unselected package libpixman-1-0:s390x.
384s Preparing to unpack .../16-libpixman-1-0_0.42.2-1build1_s390x.deb ...
384s Unpacking libpixman-1-0:s390x (0.42.2-1build1) ...
384s Selecting previously unselected package libxcb-render0:s390x.
384s Preparing to unpack .../17-libxcb-render0_1.17.0-2_s390x.deb ...
384s Unpacking libxcb-render0:s390x (1.17.0-2) ...
384s Selecting previously unselected package libxcb-shm0:s390x.
384s Preparing to unpack .../18-libxcb-shm0_1.17.0-2_s390x.deb ...
384s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
384s Selecting previously unselected package libxrender1:s390x.
384s Preparing to unpack .../19-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
384s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
384s Selecting previously unselected package libcairo2:s390x.
384s Preparing to unpack .../20-libcairo2_1.18.2-2_s390x.deb ...
384s Unpacking libcairo2:s390x (1.18.2-2) ...
384s Selecting previously unselected package libdeflate0:s390x.
384s Preparing to unpack .../21-libdeflate0_1.21-1_s390x.deb ...
384s Unpacking libdeflate0:s390x (1.21-1) ...
384s Selecting previously unselected package libgfortran5:s390x.
384s Preparing to unpack .../22-libgfortran5_14.2.0-7ubuntu1_s390x.deb ...
384s Unpacking libgfortran5:s390x (14.2.0-7ubuntu1) ...
384s Selecting previously unselected package libgomp1:s390x.
384s Preparing to unpack .../23-libgomp1_14.2.0-7ubuntu1_s390x.deb ...
384s Unpacking libgomp1:s390x (14.2.0-7ubuntu1) ...
384s Selecting previously unselected package libgraphite2-3:s390x.
384s Preparing to unpack .../24-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
384s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
384s Selecting previously unselected package libharfbuzz0b:s390x.
384s Preparing to unpack .../25-libharfbuzz0b_9.0.0-1_s390x.deb ...
384s Unpacking libharfbuzz0b:s390x (9.0.0-1) ...
384s Selecting previously unselected package libimagequant0:s390x.
384s Preparing to unpack .../26-libimagequant0_2.18.0-1build1_s390x.deb ...
384s Unpacking libimagequant0:s390x (2.18.0-1build1) ...
384s Selecting previously unselected package libjpeg-turbo8:s390x.
384s Preparing to unpack .../27-libjpeg-turbo8_2.1.5-2ubuntu2_s390x.deb ...
384s Unpacking libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
384s Selecting previously unselected package libjpeg8:s390x.
384s Preparing to unpack .../28-libjpeg8_8c-2ubuntu11_s390x.deb ...
384s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
384s Selecting previously unselected package liblapack3:s390x.
384s Preparing to unpack .../29-liblapack3_3.12.0-3build2_s390x.deb ...
384s Unpacking liblapack3:s390x (3.12.0-3build2) ...
384s Selecting previously unselected package liblcms2-2:s390x.
384s Preparing to unpack .../30-liblcms2-2_2.14-2build1_s390x.deb ...
384s Unpacking liblcms2-2:s390x (2.14-2build1) ...
384s Selecting previously unselected package libmbedcrypto7t64:s390x.
384s Preparing to unpack .../31-libmbedcrypto7t64_2.28.8-1_s390x.deb ...
384s Unpacking libmbedcrypto7t64:s390x (2.28.8-1) ...
384s Selecting previously unselected package libmbedx509-1t64:s390x.
384s Preparing to unpack .../32-libmbedx509-1t64_2.28.8-1_s390x.deb ...
384s Unpacking libmbedx509-1t64:s390x (2.28.8-1) ...
384s Selecting previously unselected package libmbedtls14t64:s390x.
384s Preparing to unpack .../33-libmbedtls14t64_2.28.8-1_s390x.deb ...
384s Unpacking libmbedtls14t64:s390x (2.28.8-1) ...
384s Selecting previously unselected package libraqm0:s390x.
384s Preparing to unpack .../34-libraqm0_0.10.1-1build1_s390x.deb ...
384s Unpacking libraqm0:s390x (0.10.1-1build1) ...
384s Selecting previously unselected package libsharpyuv0:s390x.
384s Preparing to unpack .../35-libsharpyuv0_1.4.0-0.1_s390x.deb ...
384s Unpacking libsharpyuv0:s390x (1.4.0-0.1) ...
384s Selecting previously unselected package libjbig0:s390x.
384s Preparing to unpack .../36-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
384s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
384s Selecting previously unselected package libwebp7:s390x.
384s Preparing to unpack .../37-libwebp7_1.4.0-0.1_s390x.deb ...
384s Unpacking libwebp7:s390x (1.4.0-0.1) ...
384s Selecting previously unselected package libtiff6:s390x.
384s Preparing to unpack .../38-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
384s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
384s Selecting previously unselected package libwebpdemux2:s390x.
384s Preparing to unpack .../39-libwebpdemux2_1.4.0-0.1_s390x.deb ...
384s Unpacking libwebpdemux2:s390x (1.4.0-0.1) ...
384s Selecting previously unselected package libwebpmux3:s390x.
384s Preparing to unpack .../40-libwebpmux3_1.4.0-0.1_s390x.deb ...
384s Unpacking libwebpmux3:s390x (1.4.0-0.1) ...
384s Selecting previously unselected package ncbi-data.
384s Preparing to unpack .../41-ncbi-data_6.1.20170106+dfsg2-3_all.deb ...
384s Unpacking ncbi-data (6.1.20170106+dfsg2-3) ...
384s Selecting previously unselected package ncbi-blast+.
384s Preparing to unpack .../42-ncbi-blast+_2.16.0+ds-6_s390x.deb ...
384s Unpacking ncbi-blast+ (2.16.0+ds-6) ...
384s Selecting previously unselected package ncbi-blast+-legacy.
384s Preparing to unpack .../43-ncbi-blast+-legacy_2.16.0+ds-6_all.deb ...
384s Unpacking ncbi-blast+-legacy (2.16.0+ds-6) ...
384s Selecting previously unselected package python3-numpy.
384s Preparing to unpack .../44-python3-numpy_1%3a1.26.4+ds-11build1_s390x.deb ...
384s Unpacking python3-numpy (1:1.26.4+ds-11build1) ...
384s Selecting previously unselected package libopenjp2-7:s390x.
384s Preparing to unpack .../45-libopenjp2-7_2.5.0-2ubuntu1_s390x.deb ...
384s Unpacking libopenjp2-7:s390x (2.5.0-2ubuntu1) ...
384s Selecting previously unselected package python3-pil:s390x.
384s Preparing to unpack .../46-python3-pil_10.4.0-1ubuntu1_s390x.deb ...
384s Unpacking python3-pil:s390x (10.4.0-1ubuntu1) ...
384s Selecting previously unselected package python3-cairo.
384s Preparing to unpack .../47-python3-cairo_1.26.1-2_s390x.deb ...
384s Unpacking python3-cairo (1.26.1-2) ...
384s Selecting previously unselected package python3-freetype.
384s Preparing to unpack .../48-python3-freetype_2.4.0-2_all.deb ...
384s Unpacking python3-freetype (2.4.0-2) ...
384s Selecting previously unselected package python3-rlpycairo.
384s Preparing to unpack .../49-python3-rlpycairo_0.3.0-3_all.deb ...
384s Unpacking python3-rlpycairo (0.3.0-3) ...
384s Selecting previously unselected package python3-reportlab.
384s Preparing to unpack .../50-python3-reportlab_4.2.2-1_all.deb ...
384s Unpacking python3-reportlab (4.2.2-1) ...
384s Selecting previously unselected package xml-core.
384s Preparing to unpack .../51-xml-core_0.19_all.deb ...
384s Unpacking xml-core (0.19) ...
384s Selecting previously unselected package w3c-sgml-lib.
384s Preparing to unpack .../52-w3c-sgml-lib_1.3-3_all.deb ...
384s Unpacking w3c-sgml-lib (1.3-3) ...
385s Selecting previously unselected package python3-biopython.
385s Preparing to unpack .../53-python3-biopython_1.83+dfsg1-3_s390x.deb ...
385s Unpacking python3-biopython (1.83+dfsg1-3) ...
385s Selecting previously unselected package python3-cgecore.
385s Preparing to unpack .../54-python3-cgecore_1.5.6+ds-1_all.deb ...
385s Unpacking python3-cgecore (1.5.6+ds-1) ...
385s Selecting previously unselected package python3-dateutil.
385s Preparing to unpack .../55-python3-dateutil_2.9.0-3_all.deb ...
385s Unpacking python3-dateutil (2.9.0-3) ...
385s Selecting previously unselected package python3-smmap.
385s Preparing to unpack .../56-python3-smmap_6.0.0-1_all.deb ...
385s Unpacking python3-smmap (6.0.0-1) ...
385s Selecting previously unselected package python3-gitdb.
385s Preparing to unpack .../57-python3-gitdb_4.0.11-1_all.deb ...
385s Unpacking python3-gitdb (4.0.11-1) ...
385s Selecting previously unselected package python3-git.
385s Preparing to unpack .../58-python3-git_3.1.37-3_all.deb ...
385s Unpacking python3-git (3.1.37-3) ...
385s Selecting previously unselected package python3-tz.
385s Preparing to unpack .../59-python3-tz_2024.1-2_all.deb ...
385s Unpacking python3-tz (2024.1-2) ...
385s Selecting previously unselected package python3-pandas-lib:s390x.
385s Preparing to unpack .../60-python3-pandas-lib_2.2.2+dfsg-4_s390x.deb ...
385s Unpacking python3-pandas-lib:s390x (2.2.2+dfsg-4) ...
385s Selecting previously unselected package python3-pandas.
385s Preparing to unpack .../61-python3-pandas_2.2.2+dfsg-4_all.deb ...
385s Unpacking python3-pandas (2.2.2+dfsg-4) ...
385s Selecting previously unselected package python3-cgelib.
385s Preparing to unpack .../62-python3-cgelib_0.7.3-3_all.deb ...
385s Unpacking python3-cgelib (0.7.3-3) ...
385s Selecting previously unselected package python3-tabulate.
385s Preparing to unpack .../63-python3-tabulate_0.9.0-1_all.deb ...
385s Unpacking python3-tabulate (0.9.0-1) ...
385s Selecting previously unselected package resfinder-db.
385s Preparing to unpack .../64-resfinder-db_0.0+git20220524.fa32d9a-1_all.deb ...
385s Unpacking resfinder-db (0.0+git20220524.fa32d9a-1) ...
385s Selecting previously unselected package resfinder.
385s Preparing to unpack .../65-resfinder_4.4.2-1_all.deb ...
385s Unpacking resfinder (4.4.2-1) ...
385s Selecting previously unselected package resfinder-example.
385s Preparing to unpack .../66-resfinder-example_4.4.2-1_all.deb ...
385s Unpacking resfinder-example (4.4.2-1) ...
385s Selecting previously unselected package autopkgtest-satdep.
385s Preparing to unpack .../67-2-autopkgtest-satdep.deb ...
385s Unpacking autopkgtest-satdep (0) ...
385s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
385s Setting up liblcms2-2:s390x (2.14-2build1) ...
385s Setting up ncbi-data (6.1.20170106+dfsg2-3) ...
385s Setting up libpixman-1-0:s390x (0.42.2-1build1) ...
385s Setting up libsharpyuv0:s390x (1.4.0-0.1) ...
385s Setting up libmbedcrypto7t64:s390x (2.28.8-1) ...
385s Setting up resfinder-db (0.0+git20220524.fa32d9a-1) ...
385s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
385s Setting up libxcb-render0:s390x (1.17.0-2) ...
385s Setting up x11-common (1:7.7+23ubuntu3) ...
386s Setting up libdeflate0:s390x (1.21-1) ...
386s Setting up python3-tabulate (0.9.0-1) ...
386s Setting up libxcb-shm0:s390x (1.17.0-2) ...
386s Setting up libgomp1:s390x (14.2.0-7ubuntu1) ...
386s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
386s Setting up python3-tz (2024.1-2) ...
386s Setting up liberror-perl (0.17029-2) ...
386s Setting up libfontenc1:s390x (1:1.1.8-1build1) ...
386s Setting up libblas3:s390x (3.12.0-3build2) ...
386s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
386s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
386s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ...
386s Setting up libimagequant0:s390x (2.18.0-1build1) ...
386s Setting up fonts-dejavu-mono (2.37-8) ...
386s Setting up fonts-dejavu-core (2.37-8) ...
386s Setting up libjpeg-turbo8:s390x (2.1.5-2ubuntu2) ...
386s Setting up libgfortran5:s390x (14.2.0-7ubuntu1) ...
386s Setting up libwebp7:s390x (1.4.0-0.1) ...
386s Setting up kma (1.4.14-2) ...
386s Setting up libopenjp2-7:s390x (2.5.0-2ubuntu1) ...
386s Setting up git-man (1:2.45.2-1ubuntu1) ...
386s Setting up libharfbuzz0b:s390x (9.0.0-1) ...
386s Setting up python3-dateutil (2.9.0-3) ...
386s Setting up sgml-base (1.31) ...
386s Setting up resfinder-example (4.4.2-1) ...
386s Setting up libwebpmux3:s390x (1.4.0-0.1) ...
386s Setting up python3-smmap (6.0.0-1) ...
386s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
386s Setting up liblapack3:s390x (3.12.0-3build2) ...
386s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
386s Setting up libmbedx509-1t64:s390x (2.28.8-1) ...
386s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ...
386s Setting up libwebpdemux2:s390x (1.4.0-0.1) ...
386s Setting up python3-gitdb (4.0.11-1) ...
386s Setting up python3-freetype (2.4.0-2) ...
386s Setting up xfonts-utils (1:7.7+7) ...
386s Setting up libraqm0:s390x (0.10.1-1build1) ...
386s Setting up git (1:2.45.2-1ubuntu1) ...
386s Setting up python3-numpy (1:1.26.4+ds-11build1) ...
388s Setting up libmbedtls14t64:s390x (2.28.8-1) ...
388s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
388s Setting up xml-core (0.19) ...
388s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ...
388s Setting up python3-pandas-lib:s390x (2.2.2+dfsg-4) ...
388s Setting up fonts-urw-base35 (20200910-8) ...
388s Setting up libcairo2:s390x (1.18.2-2) ...
388s Setting up ncbi-blast+ (2.16.0+ds-6) ...
388s Setting up python3-pil:s390x (10.4.0-1ubuntu1) ...
389s Setting up python3-pandas (2.2.2+dfsg-4) ...
394s Setting up python3-git (3.1.37-3) ...
394s Setting up ncbi-blast+-legacy (2.16.0+ds-6) ...
394s Setting up python3-cairo (1.26.1-2) ...
394s Setting up python3-cgelib (0.7.3-3) ...
394s Setting up python3-rlpycairo (0.3.0-3) ...
394s Setting up python3-reportlab (4.2.2-1) ...
395s Processing triggers for libc-bin (2.40-1ubuntu3) ...
395s Processing triggers for man-db (2.12.1-3) ...
396s Processing triggers for sgml-base (1.31) ...
396s Setting up w3c-sgml-lib (1.3-3) ...
415s Setting up python3-biopython (1.83+dfsg1-3) ...
416s Setting up python3-cgecore (1.5.6+ds-1) ...
417s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:242: SyntaxWarning: invalid escape sequence '\w'
417s   start = re.search("^-*(\w+)", align_query).start(1)
417s /usr/lib/python3/dist-packages/cgecore/cgefinder.py:243: SyntaxWarning: invalid escape sequence '\w'
417s   end = re.search("\w+(-*)$", align_query).start(1)
417s /usr/lib/python3/dist-packages/cgecore/utility.py:137: SyntaxWarning: invalid escape sequence '\{'
417s   """
417s /usr/lib/python3/dist-packages/cgecore/utility.py:491: SyntaxWarning: invalid escape sequence '\w'
417s   src = re.sub('[^\w/\-\.\*]', '', src)
417s /usr/lib/python3/dist-packages/cgecore/utility.py:492: SyntaxWarning: invalid escape sequence '\w'
417s   dst = re.sub('[^\w/\-\.\*]', '', dst)
417s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
417s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
417s /usr/lib/python3/dist-packages/cgecore/utility.py:493: SyntaxWarning: invalid escape sequence '\W'
417s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
417s /usr/lib/python3/dist-packages/cgecore/utility.py:520: SyntaxWarning: invalid escape sequence '\w'
417s   invalid_chars = re.findall('[^\w/\-\.\*]', os.path.basename(file_))
417s /usr/lib/python3/dist-packages/cgecore/utility.py:539: SyntaxWarning: invalid escape sequence '\w'
417s   src = re.sub('[^\w/\-\.\*]', '', src)
417s /usr/lib/python3/dist-packages/cgecore/utility.py:540: SyntaxWarning: invalid escape sequence '\w'
417s   dst = re.sub('[^\w/\-\.\*]', '', dst)
417s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
417s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
417s /usr/lib/python3/dist-packages/cgecore/utility.py:541: SyntaxWarning: invalid escape sequence '\W'
417s   if len(re.sub('[\W]', '', src)) < 5 or len(re.sub('[\W]', '', dst)) < 5:
417s Setting up resfinder (4.4.2-1) ...
417s Setting up autopkgtest-satdep (0) ...
419s (Reading database ... 62464 files and directories currently installed.)
419s Removing autopkgtest-satdep (0) ...
421s autopkgtest [16:58:25]: test version-test: [-----------------------
422s PASS
422s autopkgtest [16:58:26]: test version-test: -----------------------]
423s version-test         PASS (superficial)
423s autopkgtest [16:58:27]: test version-test:  - - - - - - - - - - results - - - - - - - - - -
423s autopkgtest [16:58:27]: @@@@@@@@@@@@@@@@@@@@ summary
423s run-unit-test        PASS
423s version-test         PASS (superficial)
434s nova [W] Using flock in prodstack6-s390x
434s flock: timeout while waiting to get lock
434s Creating nova instance adt-plucky-s390x-resfinder-20241101-165124-juju-7f2275-prod-proposed-migration-environment-15-85989f15-8a9e-4155-a57d-6433203288b9 from image adt/ubuntu-plucky-s390x-server-20241101.img (UUID efc880a6-ff20-4207-a161-b1113fd9bea7)...
434s nova [W] Using flock in prodstack6-s390x
434s Creating nova instance adt-plucky-s390x-resfinder-20241101-165124-juju-7f2275-prod-proposed-migration-environment-15-85989f15-8a9e-4155-a57d-6433203288b9 from image adt/ubuntu-plucky-s390x-server-20241101.img (UUID efc880a6-ff20-4207-a161-b1113fd9bea7)...