0s autopkgtest [18:28:35]: starting date and time: 2025-03-15 18:28:35+0000 0s autopkgtest [18:28:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:28:35]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lsizjd8z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.univar --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-12.secgroup --name adt-plucky-s390x-r-cran-spatstat.univar-20250315-182835-juju-7f2275-prod-proposed-migration-environment-15-40509828-02bc-480e-b23b-a519b3f7d10b --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 141s autopkgtest [18:30:56]: testbed dpkg architecture: s390x 141s autopkgtest [18:30:56]: testbed apt version: 2.9.33 141s autopkgtest [18:30:56]: @@@@@@@@@@@@@@@@@@@@ test bed setup 141s autopkgtest [18:30:56]: testbed release detected to be: None 142s autopkgtest [18:30:57]: updating testbed package index (apt update) 142s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 143s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 143s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 143s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 143s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 143s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 143s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 143s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 143s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 143s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 143s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 144s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 144s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 144s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 144s Fetched 1073 kB in 2s (580 kB/s) 145s Reading package lists... 145s + lsb_release --codename --short 145s + RELEASE=plucky 145s + cat 145s + [ plucky != trusty ] 145s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 145s Calculating upgrade... 146s Calculating upgrade... 146s The following packages were automatically installed and are no longer required: 146s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 146s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 146s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 146s linux-tools-6.11.0-8-generic 146s Use 'sudo apt autoremove' to remove them. 146s The following packages will be upgraded: 146s pinentry-curses python3-jinja2 strace 146s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 146s Need to get 652 kB of archives. 146s After this operation, 27.6 kB of additional disk space will be used. 146s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 147s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 147s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 147s Fetched 652 kB in 1s (546 kB/s) 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 147s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 147s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 147s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 147s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 147s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 147s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 147s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 147s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 147s Setting up strace (6.13+ds-1ubuntu1) ... 147s Processing triggers for man-db (2.13.0-1) ... 148s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 148s + /usr/lib/apt/apt-helper analyze-pattern ?true 148s + uname -r 148s + sed s/\./\\./g 148s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 148s + apt list ?obsolete 148s + tail -n+2 148s + cut+ grep -v ^linux-.*6\.14\.0-10-generic.* 148s -d/ -f1 148s + obsolete_pkgs=linux-headers-6.11.0-8-generic 148s linux-headers-6.11.0-8 148s linux-modules-6.11.0-8-generic 148s linux-tools-6.11.0-8-generic 148s linux-tools-6.11.0-8 148s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s Solving dependencies... 148s The following packages will be REMOVED: 148s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 148s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 148s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 148s linux-tools-6.11.0-8-generic* 149s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 149s After this operation, 167 MB disk space will be freed. 149s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 149s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 149s Removing libpython3.12t64:s390x (3.12.9-1) ... 149s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 149s Removing libnsl2:s390x (1.3.0-3build3) ... 149s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 149s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 149s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 150s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 150s Processing triggers for libc-bin (2.41-1ubuntu1) ... 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 150s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 150s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 150s + grep -q trusty /etc/lsb-release 150s + [ ! -d /usr/share/doc/unattended-upgrades ] 150s + [ ! -d /usr/share/doc/lxd ] 150s + [ ! -d /usr/share/doc/lxd-client ] 150s + [ ! -d /usr/share/doc/snapd ] 150s + type iptables 150s + cat 150s + chmod 755 /etc/rc.local 150s + . /etc/rc.local 150s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 150s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 150s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 150s + uname -m 150s + [ s390x = ppc64le ] 150s + [ -d /run/systemd/system ] 150s + systemd-detect-virt --quiet --vm 150s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 150s + cat 150s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 150s + echo COMPRESS=lz4 150s autopkgtest [18:31:05]: upgrading testbed (apt dist-upgrade and autopurge) 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 150s Starting 2 pkgProblemResolver with broken count: 0 150s Done 151s Entering ResolveByKeep 151s 151s Calculating upgrade... 151s The following packages will be upgraded: 151s libc-bin libc-dev-bin libc6 libc6-dev locales 151s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 151s Need to get 9512 kB of archives. 151s After this operation, 8192 B of additional disk space will be used. 151s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 153s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 153s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 156s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 157s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 162s Preconfiguring packages ... 162s Fetched 9512 kB in 11s (882 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 162s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 162s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 162s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 162s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up libc6:s390x (2.41-1ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 162s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 162s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up libc-bin (2.41-1ubuntu2) ... 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 162s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 162s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 162s Setting up locales (2.41-1ubuntu2) ... 163s Generating locales (this might take a while)... 164s en_US.UTF-8... done 164s Generation complete. 164s Setting up libc-dev-bin (2.41-1ubuntu2) ... 164s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 164s Processing triggers for man-db (2.13.0-1) ... 164s Processing triggers for systemd (257.3-1ubuntu3) ... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Starting pkgProblemResolver with broken count: 0 165s Starting 2 pkgProblemResolver with broken count: 0 165s Done 165s Solving dependencies... 166s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 166s autopkgtest [18:31:21]: rebooting testbed after setup commands that affected boot 188s autopkgtest [18:31:43]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 190s autopkgtest [18:31:45]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.univar 192s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (dsc) [2194 B] 192s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (tar) [67.9 kB] 192s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.univar 3.1-1-1build1 (diff) [3172 B] 192s gpgv: Signature made Sat Feb 22 20:26:45 2025 UTC 192s gpgv: using RSA key 5C7ABEA20F8630459CC8C8B5E27F2CF8458C2FA4 192s gpgv: Can't check signature: No public key 192s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.univar_3.1-1-1build1.dsc: no acceptable signature found 192s autopkgtest [18:31:47]: testing package r-cran-spatstat.univar version 3.1-1-1build1 192s autopkgtest [18:31:47]: build not needed 198s autopkgtest [18:31:53]: test run-unit-test: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 198s Starting pkgProblemResolver with broken count: 0 198s Starting 2 pkgProblemResolver with broken count: 0 198s Done 198s The following NEW packages will be installed: 198s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 198s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 198s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 198s libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 198s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 198s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 198s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-spatstat.univar 198s r-cran-spatstat.utils unzip x11-common xdg-utils zip 199s 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. 199s Need to get 40.8 MB of archives. 199s After this operation, 81.9 MB of additional disk space will be used. 199s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 199s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 200s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 201s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 201s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 201s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 201s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 202s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 202s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 202s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 202s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 202s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 202s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 202s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 202s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 203s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 203s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 203s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 204s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 204s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 204s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 204s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 204s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 208s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 208s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 208s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 208s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 208s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 208s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 208s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 209s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 209s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 209s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 210s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 210s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 210s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 210s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 210s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 210s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 211s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 212s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 212s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 212s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 212s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 246s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.utils s390x 3.1-2-1 [382 kB] 246s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.univar s390x 3.1-1-1build1 [313 kB] 247s Preconfiguring packages ... 247s Fetched 40.8 MB in 48s (847 kB/s) 247s Selecting previously unselected package libfreetype6:s390x. 247s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 247s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 247s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 247s Selecting previously unselected package fonts-dejavu-mono. 247s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 247s Unpacking fonts-dejavu-mono (2.37-8) ... 247s Selecting previously unselected package fonts-dejavu-core. 247s Preparing to unpack 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251s Processing triggers for install-info (7.1.1-1) ... 251s Processing triggers for libc-bin (2.41-1ubuntu2) ... 252s autopkgtest [18:32:47]: test run-unit-test: [----------------------- 252s BEGIN TEST all.R 252s 252s R version 4.4.3 (2025-02-28) -- "Trophy Case" 252s Copyright (C) 2025 The R Foundation for Statistical Computing 252s Platform: s390x-ibm-linux-gnu 252s 252s R is free software and comes with ABSOLUTELY NO WARRANTY. 252s You are welcome to redistribute it under certain conditions. 252s Type 'license()' or 'licence()' for distribution details. 252s 252s R is a collaborative project with many contributors. 252s Type 'contributors()' for more information and 252s 'citation()' on how to cite R or R packages in publications. 252s 252s Type 'demo()' for some demos, 'help()' for on-line help, or 252s 'help.start()' for an HTML browser interface to help. 252s Type 'q()' to quit R. 252s 253s > #' 253s > #' Header for all (concatenated) test files 253s > #' 253s > #' Require spatstat.univar 253s > #' Obtain environment variable controlling tests. 253s > #' 253s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 253s > 253s > require(spatstat.univar) 253s Loading required package: spatstat.univar 253s spatstat.univar 3.1-1 253s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 253s > ALWAYS <- TRUE 253s > cat(paste("--------- Executing", 253s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 253s + "test code -----------\n")) 253s --------- Executing **RESTRICTED** subset of test code ----------- 253s > # tests/weightedstats.R 253s > # $Revision: 1.2 $ $Date: 2023/11/05 01:40:53 $ 253s > 253s > local({ 253s + if(ALWAYS) { # depends on hardware 253s + ## whist() 253s + ## check agreement between C and interpreted code for whist() 253s + set.seed(98123) 253s + x <- runif(1000) 253s + w <- sample(1:5, 1000, replace=TRUE) 253s + b <- seq(0,1,length=101) 253s + aC <- whist(x,b,w, method="C") 253s + aR <- whist(x,b,w, method="interpreted") 253s + if(!all(aC == aR)) 253s + stop("Algorithms for whist disagree") 253s + } 253s + if(FULLTEST) { 253s + ## cases of 'unnormdensity()' 253s + x <- rnorm(20) 253s + d0 <- unnormdensity(x, weights=rep(0, 20)) 253s + dneg <- unnormdensity(x, weights=c(-runif(19), 0)) 253s + } 253s + 253s + }) 253s > 253s > #' 253s > #' tests/parzen.R 253s > #' 253s > #' Tests of the Parzen-Rosenblatt estimator 253s > #' (fixed bandwidth, no boundary correction) 253s > #' 253s > #' $Revision: 1.1 $ $Date: 2023/10/22 02:39:49 $ 253s > 253s > local({ 253s + if(FULLTEST) { 253s + #' code in kernels.R 253s + kernames <- c("gaussian", "rectangular", "triangular", 253s + "epanechnikov", "biweight", "cosine", "optcosine") 253s + X <- rnorm(20) 253s + U <- runif(20) 253s + for(ker in kernames) { 253s + dX <- dkernel(X, ker) 253s + fX <- pkernel(X, ker) 253s + qU <- qkernel(U, ker) 253s + m0 <- kernel.moment(0, 0, ker) 253s + m1 <- kernel.moment(1, 0, ker) 253s + m2 <- kernel.moment(2, 0, ker) 253s + m3 <- kernel.moment(3, 0, ker) 253s + fa <- kernel.factor(ker) 253s + sq <- kernel.squint(ker) 253s + } 253s + } 253s + }) 253s > 253s > local({ 253s + if(ALWAYS) { 253s + ## unnormdensity 253s + x <- rnorm(20) 253s + d0 <- unnormdensity(x, weights=rep(0, 20)) 253s + dneg <- unnormdensity(x, weights=c(-runif(19), 0)) 253s + } 253s + }) 253s > # 253s > # tests/NAinCov.R 253s > # 253s > # Testing the response to the presence of NA's in covariates 253s > # 253s > # $Revision: 1.10 $ $Date: 2024/09/30 23:13:54 $ 253s > 253s > if(FULLTEST) { 253s + local({ 253s + #' quantile.ewcdf 253s + f <- ewcdf(runif(100), runif(100)) 253s + qf <- quantile(f, probs=c(0.1, NA, 0.8)) 253s + #' quantile.density 253s + f <- density(runif(100)) 253s + qf <- quantile(f, probs=c(0.1, NA, 0.8)) 253s + }) 253s + } 253s > 253s > #' tests/direct.R 253s > #' 253s > #' Check output of densityBC() by comparing with 253s > #' kernel estimates computed directly in R code. 253s > #' 253s > #' $Revision: 1.2 $ $Date: 2023/10/22 02:39:35 $ 253s > 253s > INTERACTIVE <- FALSE 253s > 253s > #' ...... direct implementation ........................ 253s > #' 253s > #' Biweight boundary kernel (for estimation at point r) 253s > 253s > bdry.bwt <- function(x,r,h=1){ 253s + u <- x/h 253s + k <- (15/(16*h))*(1-u^2)^2*(u^2<1) 253s + p <- r/h 253s + p[p>1] <- 1 253s + a0 <- (3*p^5 - 10*p^3 + 15*p + 8)/16 253s + a1 <- (5*p^6 - 15*p^4 + 15*p^2 -5)/32 253s + a2 <- (15*p^7 - 42*p^5 + 35*p^3 + 8)/112 253s + bk <- (a2-a1*u)*k*(u 253s > #' Standard biweight kernel 253s > 253s > bwt <- function(x,r,h=1){ 253s + # r is ignored 253s + u <- x/h 253s + k <- (15/(16*h))*(1-u^2)^2*(u^2<1) 253s + k 253s + } 253s > 253s > #' Kernel estimate 253s > 253s > kernR <- function(x, h, kname="bwt", from, to, nr=200) { 253s + ker <- get(kname, mode="function") 253s + fhat <- numeric(0) 253s + rvalues <- seq(from, to, length=nr) 253s + for (r in rvalues) 253s + fhat <- c(fhat,mean(ker(r-x, r, h=h))) 253s + return(list(x=rvalues, y=fhat)) 253s + } 253s > 253s > #' ...................... RUN EXAMPLE ....................... 253s > 253s > sim.dat <- rexp(500) 253s > 253s > from <- 0.01 253s > to <- 5 253s > nr <- 200 253s > 253s > if(INTERACTIVE) opa <- par(ask=TRUE) 253s > 253s > cat("--- Fixed bandwidth ---\n") 253s --- Fixed bandwidth --- 253s > 253s > fhatR <- kernR(sim.dat, 0.4, "bwt", from=from, to=to, nr=nr) 253s > fhatC <- densityBC(sim.dat, "biweight", h=0.4, from=from, to=to, n=nr) 253s > 253s > stopifnot(length(fhatR$x) == length(fhatC$x)) 253s > stopifnot(all(fhatR$x == fhatC$x)) 253s > rvalues <- fhatR$x 253s > ftrue <- dexp(rvalues) 253s > 253s > if(INTERACTIVE) { 253s + plot(c(from, to), c(0, 1.1), type="n", xlab="r", ylab="density", 253s + main="Fixed bandwidth") 253s + lines(rvalues, fhatR$y, col=1) 253s + lines(rvalues, fhatC$x, col=2) 253s + lines(rvalues, ftrue, col=3) 253s + } 253s > 253s > cat("Range of absolute discrepancies between estimates (fixed bandwidth):\n") 253s Range of absolute discrepancies between estimates (fixed bandwidth): 253s > print(range(fhatC$y - fhatR$y)) 253s [1] -5.551115e-16 6.661338e-16 253s > 253s > cat("\n--- Boundary kernel ---\n") 253s 253s --- Boundary kernel --- 253s > 253s > fhat.R <- kernR(sim.dat, 0.4, "bdry.bwt", from=from, to=to, nr=nr) 253s > fhat.C <- densityBC(sim.dat, "biweight", h=0.4, from=from, to=to, n=nr, 253s + zerocor="bdrykern") 253s > 253s > stopifnot(length(fhat.R$x) == length(fhat.C$x)) 253s > stopifnot(all(fhat.R$x == fhat.C$x)) 253s > 253s > rvalues <- fhat.R$x 253s > ftrue <- dexp(rvalues) 253s > 253s > if(INTERACTIVE) { 253s + plot(c(from, to), c(0, 1.1), type="n", xlab="r", ylab="density", 253s + main="Boundary kernel") 253s + lines(rvalues, fhat.R$y, col=1) 253s + lines(rvalues, fhat.C$y, col=2) 253s + lines(rvalues, ftrue, col=3) 253s + } 253s > 253s > cat("Range of absolute discrepancies between estimates (boundary kernel):\n") 253s Range of absolute discrepancies between estimates (boundary kernel): 253s > print(range(fhat.C$y - fhat.R$y)) 253s [1] -7.771561e-16 4.440892e-16 253s > 253s > rel.discrep <- (fhat.C$y - fhat.R$y)/ftrue 253s > rel.discrep <- rel.discrep[ftrue > 0.1] 253s > cat("Range of relative discrepancies between estimates (boundary kernel):\n") 253s Range of relative discrepancies between estimates (boundary kernel): 253s > print(range(rel.discrep)) 253s [1] -1.008677e-15 7.985193e-16 253s > if(max(abs(rel.discrep)) > 0.01) 253s + stop("Relative discrepancies between C and R code exceed 1 percent") 253s > 253s > if(INTERACTIVE) par(opa) 253s > 253s > #' tests/kermom.R 253s > #' 253s > #' Check R function kernel.moment() against C function kermom () 253s > #' 253s > #' $Revision: 1.2 $ $Date: 2024/10/31 10:36:27 $ 253s > #' 253s > 253s > moo <- 1 253s > sdee <- 0.5 253s > xx <- seq(moo - 4 * sdee, moo + 4 * sdee, length=512) 253s > 253s > kernames <- c("gaussian", "rectangular", "triangular", 253s + "epanechnikov", "biweight", "cosine", "optcosine") 253s > 253s > eps <- sqrt(.Machine$double.eps) 253s > 253s > for(m in 0:2) { 253s + cat("Incomplete moment of order", m, fill=TRUE) 253s + for(ker in kernames) { 253s + Rvalues <- kernel.moment(m, xx, ker, mean=moo, sd=sdee) 253s + Cvalues <- kermom(m, xx, ker, mean=moo, sd=sdee) 253s + discrep <- max(abs(Rvalues-Cvalues)) 253s + if(discrep > eps) 253s + stop(paste("kernel.moment and kermom disagree", 253s + "for m =", m, "for kernel", sQuote(ker), 253s + "\n\tDiscrepancy", discrep)) 253s + cat("Kernel", sQuote(ker), "\tdiscrepancy", discrep, fill=TRUE) 253s + } 253s + } 253s Incomplete moment of order 0 253s Kernel ‘gaussian’ discrepancy 0 253s Kernel ‘rectangular’ discrepancy 0 253s Kernel ‘triangular’ discrepancy 2.220446e-16 253s Kernel ‘epanechnikov’ discrepancy 2.220446e-16 253s Kernel ‘biweight’ discrepancy 2.220446e-16 253s Kernel ‘cosine’ discrepancy 0 253s Kernel ‘optcosine’ discrepancy 0 253s Incomplete moment of order 1 253s Kernel ‘gaussian’ discrepancy 0 253s Kernel ‘rectangular’ discrepancy 1.110223e-16 253s Kernel ‘triangular’ discrepancy 3.330669e-16 253s Kernel ‘epanechnikov’ discrepancy 2.220446e-16 253s Kernel ‘biweight’ discrepancy 3.330669e-16 253s Kernel ‘cosine’ discrepancy 1.110223e-16 253s Kernel ‘optcosine’ discrepancy 1.110223e-16 253s Incomplete moment of order 2 253s Kernel ‘gaussian’ discrepancy 2.220446e-16 253s Kernel ‘rectangular’ discrepancy 2.220446e-16 253s Kernel ‘triangular’ discrepancy 4.440892e-16 253s Kernel ‘epanechnikov’ discrepancy 4.440892e-16 253s Kernel ‘biweight’ discrepancy 4.440892e-16 253s Kernel ‘cosine’ discrepancy 2.220446e-16 253s Kernel ‘optcosine’ discrepancy 2.94903e-16 253s > 253s autopkgtest [18:32:48]: test run-unit-test: -----------------------] 253s run-unit-test PASS 253s autopkgtest [18:32:48]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 254s autopkgtest [18:32:49]: test pkg-r-autopkgtest: preparing testbed 254s Reading package lists... 254s Building dependency tree... 254s Reading state information... 254s Starting pkgProblemResolver with broken count: 0 254s Starting 2 pkgProblemResolver with broken count: 0 254s Done 254s The following NEW packages will be installed: 254s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 254s dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 254s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 254s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 254s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 254s libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev 254s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3 254s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 254s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 254s libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 255s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. 255s Need to get 82.3 MB of archives. 255s After this operation, 279 MB of additional disk space will be used. 255s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 256s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 256s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 265s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 265s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 265s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 265s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 265s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 265s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 269s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 270s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 271s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 293s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 294s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 294s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 294s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 297s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 308s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 308s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 308s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 308s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 308s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 308s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 309s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 321s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 321s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 321s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 321s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 321s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 321s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 321s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 321s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 335s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 335s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 335s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 335s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 342s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 343s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 343s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 343s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 343s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 344s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 344s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 345s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 346s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 346s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 346s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 346s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 346s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 346s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 346s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 347s Fetched 82.3 MB in 1min 32s (896 kB/s) 347s Selecting previously unselected package libisl23:s390x. 347s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58571 files and directories currently installed.) 347s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ... 347s Unpacking libisl23:s390x (0.27-1) ... 347s Selecting previously unselected package libmpc3:s390x. 347s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ... 347s Unpacking libmpc3:s390x (1.3.1-1build2) ... 347s Selecting previously unselected package cpp-14-s390x-linux-gnu. 347s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package cpp-14. 347s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package cpp-s390x-linux-gnu. 347s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 347s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 347s Selecting previously unselected package cpp. 347s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 347s Unpacking cpp (4:14.2.0-1ubuntu1) ... 347s Selecting previously unselected package libcc1-0:s390x. 347s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 347s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 347s Selecting previously unselected package libitm1:s390x. 347s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_s390x.deb ... 347s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 347s Selecting previously unselected package libasan8:s390x. 347s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_s390x.deb ... 347s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 347s Selecting previously unselected package libubsan1:s390x. 347s Preparing to unpack .../09-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 347s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 347s Selecting previously unselected package libgcc-14-dev:s390x. 347s Preparing to unpack .../10-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package gcc-14-s390x-linux-gnu. 347s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package gcc-14. 347s Preparing to unpack .../12-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package gcc-s390x-linux-gnu. 347s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 347s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 347s Selecting previously unselected package gcc. 347s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 347s Unpacking gcc (4:14.2.0-1ubuntu1) ... 347s Selecting previously unselected package libstdc++-14-dev:s390x. 347s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package g++-14-s390x-linux-gnu. 347s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package g++-14. 347s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ... 347s Unpacking g++-14 (14.2.0-17ubuntu3) ... 347s Selecting previously unselected package g++-s390x-linux-gnu. 347s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 347s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 347s Selecting previously unselected package g++. 347s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 347s Unpacking g++ (4:14.2.0-1ubuntu1) ... 347s Selecting previously unselected package build-essential. 347s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ... 347s Unpacking build-essential (12.10ubuntu1) ... 347s Selecting previously unselected package dctrl-tools. 347s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ... 348s Unpacking dctrl-tools (2.24-3build3) ... 348s Selecting previously unselected package libgfortran-14-dev:s390x. 348s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 348s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 348s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 348s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 348s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 348s Selecting previously unselected package gfortran-14. 348s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 348s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 348s Selecting previously unselected package gfortran-s390x-linux-gnu. 348s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 348s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 348s Selecting previously unselected package gfortran. 348s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 348s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 348s Selecting previously unselected package icu-devtools. 348s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ... 348s Unpacking icu-devtools (76.1-1ubuntu2) ... 348s Selecting previously unselected package libblas-dev:s390x. 348s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ... 348s Unpacking libblas-dev:s390x (3.12.1-2) ... 348s Selecting previously unselected package libbz2-dev:s390x. 348s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ... 348s Unpacking libbz2-dev:s390x (1.0.8-6) ... 348s Selecting previously unselected package libdeflate-dev:s390x. 348s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ... 348s Unpacking libdeflate-dev:s390x (1.23-1) ... 348s Selecting previously unselected package libicu-dev:s390x. 348s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ... 348s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 348s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 348s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 348s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 348s Selecting previously unselected package libjpeg8-dev:s390x. 348s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 348s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 348s Selecting previously unselected package libjpeg-dev:s390x. 348s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 348s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 348s Selecting previously unselected package liblapack-dev:s390x. 348s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ... 348s Unpacking liblapack-dev:s390x (3.12.1-2) ... 348s Selecting previously unselected package libncurses-dev:s390x. 348s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ... 348s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 348s Selecting previously unselected package libpcre2-16-0:s390x. 348s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ... 348s Unpacking libpcre2-16-0:s390x (10.45-1) ... 348s Selecting previously unselected package libpcre2-32-0:s390x. 348s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ... 348s Unpacking libpcre2-32-0:s390x (10.45-1) ... 348s Selecting previously unselected package libpcre2-posix3:s390x. 348s Preparing to unpack .../39-libpcre2-posix3_10.45-1_s390x.deb ... 348s Unpacking libpcre2-posix3:s390x (10.45-1) ... 348s Selecting previously unselected package libpcre2-dev:s390x. 348s Preparing to unpack .../40-libpcre2-dev_10.45-1_s390x.deb ... 348s Unpacking libpcre2-dev:s390x (10.45-1) ... 348s Selecting previously unselected package libpkgconf3:s390x. 348s Preparing to unpack .../41-libpkgconf3_1.8.1-4_s390x.deb ... 348s Unpacking libpkgconf3:s390x (1.8.1-4) ... 348s Selecting previously unselected package zlib1g-dev:s390x. 348s Preparing to unpack .../42-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 348s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 348s Selecting previously unselected package libpng-dev:s390x. 348s Preparing to unpack .../43-libpng-dev_1.6.47-1_s390x.deb ... 348s Unpacking libpng-dev:s390x (1.6.47-1) ... 348s Selecting previously unselected package libreadline-dev:s390x. 348s Preparing to unpack .../44-libreadline-dev_8.2-6_s390x.deb ... 348s Unpacking libreadline-dev:s390x (8.2-6) ... 348s Selecting previously unselected package liblzma-dev:s390x. 348s Preparing to unpack .../45-liblzma-dev_5.6.4-1_s390x.deb ... 348s Unpacking liblzma-dev:s390x (5.6.4-1) ... 348s Selecting previously unselected package pkgconf-bin. 348s Preparing to unpack .../46-pkgconf-bin_1.8.1-4_s390x.deb ... 348s Unpacking pkgconf-bin (1.8.1-4) ... 348s Selecting previously unselected package pkgconf:s390x. 348s Preparing to unpack .../47-pkgconf_1.8.1-4_s390x.deb ... 348s Unpacking pkgconf:s390x (1.8.1-4) ... 348s Selecting previously unselected package libtirpc-dev:s390x. 348s Preparing to unpack .../48-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 348s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 348s Selecting previously unselected package r-base-dev. 348s Preparing to unpack .../49-r-base-dev_4.4.3-1_all.deb ... 348s Unpacking r-base-dev (4.4.3-1) ... 348s Selecting previously unselected package pkg-r-autopkgtest. 348s Preparing to unpack .../50-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 348s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 348s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 348s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 348s Setting up libreadline-dev:s390x (8.2-6) ... 348s Setting up libpcre2-16-0:s390x (10.45-1) ... 348s Setting up libpcre2-32-0:s390x (10.45-1) ... 348s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 348s Setting up libpkgconf3:s390x (1.8.1-4) ... 348s Setting up libmpc3:s390x (1.3.1-1build2) ... 348s Setting up icu-devtools (76.1-1ubuntu2) ... 348s Setting up pkgconf-bin (1.8.1-4) ... 348s Setting up liblzma-dev:s390x (5.6.4-1) ... 348s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 348s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 348s Setting up libpcre2-posix3:s390x (10.45-1) ... 348s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 348s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 348s Setting up libisl23:s390x (0.27-1) ... 348s Setting up libdeflate-dev:s390x (1.23-1) ... 348s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 348s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 348s Setting up libblas-dev:s390x (3.12.1-2) ... 348s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 348s Setting up dctrl-tools (2.24-3build3) ... 348s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 348s Setting up libbz2-dev:s390x (1.0.8-6) ... 348s Setting up libpcre2-dev:s390x (10.45-1) ... 348s Setting up libpng-dev:s390x (1.6.47-1) ... 348s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 348s Setting up pkgconf:s390x (1.8.1-4) ... 348s Setting up liblapack-dev:s390x (3.12.1-2) ... 348s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 348s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 348s Setting up cpp-14 (14.2.0-17ubuntu3) ... 348s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 348s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 348s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 348s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 348s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 348s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 348s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 348s Setting up cpp (4:14.2.0-1ubuntu1) ... 348s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 348s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 348s Setting up gcc-14 (14.2.0-17ubuntu3) ... 348s Setting up g++-14 (14.2.0-17ubuntu3) ... 348s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 348s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 348s Setting up gcc (4:14.2.0-1ubuntu1) ... 348s Setting up g++ (4:14.2.0-1ubuntu1) ... 348s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 348s Setting up build-essential (12.10ubuntu1) ... 348s Setting up gfortran (4:14.2.0-1ubuntu1) ... 348s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 348s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 348s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 348s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 348s Setting up r-base-dev (4.4.3-1) ... 348s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 348s Processing triggers for libc-bin (2.41-1ubuntu2) ... 348s Processing triggers for man-db (2.13.0-1) ... 349s Processing triggers for install-info (7.1.1-1) ... 350s autopkgtest [18:34:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 350s autopkgtest [18:34:25]: test pkg-r-autopkgtest: [----------------------- 350s Test: Try to load the R library spatstat.univar 350s 350s R version 4.4.3 (2025-02-28) -- "Trophy Case" 350s Copyright (C) 2025 The R Foundation for Statistical Computing 350s Platform: s390x-ibm-linux-gnu 350s 350s R is free software and comes with ABSOLUTELY NO WARRANTY. 350s You are welcome to redistribute it under certain conditions. 350s Type 'license()' or 'licence()' for distribution details. 350s 350s R is a collaborative project with many contributors. 350s Type 'contributors()' for more information and 350s 'citation()' on how to cite R or R packages in publications. 350s 350s Type 'demo()' for some demos, 'help()' for on-line help, or 350s 'help.start()' for an HTML browser interface to help. 350s Type 'q()' to quit R. 350s 350s > library('spatstat.univar') 350s spatstat.univar 3.1-1 350s > 350s > 350s Other tests are currently unsupported! 350s They will be progressively added. 351s autopkgtest [18:34:26]: test pkg-r-autopkgtest: -----------------------] 351s autopkgtest [18:34:26]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 351s pkg-r-autopkgtest PASS 351s autopkgtest [18:34:26]: @@@@@@@@@@@@@@@@@@@@ summary 351s run-unit-test PASS 351s pkg-r-autopkgtest PASS 371s nova [W] Using flock in prodstack6-s390x 371s flock: timeout while waiting to get lock 371s Creating nova instance adt-plucky-s390x-r-cran-spatstat.univar-20250315-182835-juju-7f2275-prod-proposed-migration-environment-15-40509828-02bc-480e-b23b-a519b3f7d10b from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 371s nova [W] Timed out waiting for 2a64b861-7277-4de2-b050-525d4d01c04a to get deleted.