1s autopkgtest [18:58:32]: starting date and time: 2025-03-15 18:58:32+0000 1s autopkgtest [18:58:32]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 1s autopkgtest [18:58:32]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4c6vzjqr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-spatstat.linnet --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-26.secgroup --name adt-plucky-s390x-r-cran-spatstat.linnet-20250315-182830-juju-7f2275-prod-proposed-migration-environment-15-1583ac1e-7262-42d7-9cc6-3985889840f5 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [19:00:05]: testbed dpkg architecture: s390x 95s autopkgtest [19:00:06]: testbed apt version: 2.9.33 95s autopkgtest [19:00:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup 95s autopkgtest [19:00:06]: testbed release detected to be: None 96s autopkgtest [19:00:07]: updating testbed package index (apt update) 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 96s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 96s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 97s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 97s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 97s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 97s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 97s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 97s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 97s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 97s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 97s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 97s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 97s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 97s Fetched 1073 kB in 1s (852 kB/s) 98s Reading package lists... 99s + lsb_release --codename --short 99s + RELEASE=plucky 99s + cat 99s + [ plucky != trusty ] 99s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 99s Calculating upgrade... 99s Calculating upgrade... 99s The following packages were automatically installed and are no longer required: 99s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 99s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 99s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 99s linux-tools-6.11.0-8-generic 99s Use 'sudo apt autoremove' to remove them. 99s The following packages will be upgraded: 99s pinentry-curses python3-jinja2 strace 99s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 99s Need to get 652 kB of archives. 99s After this operation, 27.6 kB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 100s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 100s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 100s Fetched 652 kB in 1s (759 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 100s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 100s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 100s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 100s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 100s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 100s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 100s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 100s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 101s Setting up strace (6.13+ds-1ubuntu1) ... 101s Processing triggers for man-db (2.13.0-1) ... 101s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 101s + /usr/lib/apt/apt-helper analyze-pattern ?true 101s + uname+ -r 101s sed s/\./\\./g 101s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 101s + apt list ?obsolete 101s + tail -n+2 101s + cut -d/ -f1 101s + grep -v ^linux-.*6\.14\.0-10-generic.* 101s Reading package lists...+ obsolete_pkgs=linux-headers-6.11.0-8-generic 101s linux-headers-6.11.0-8 101s linux-modules-6.11.0-8-generic 101s linux-tools-6.11.0-8-generic 101s linux-tools-6.11.0-8 101s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 101s 101s Building dependency tree... 101s Reading state information... 101s Solving dependencies... 102s The following packages will be REMOVED: 102s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 102s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 102s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 102s linux-tools-6.11.0-8-generic* 102s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 102s After this operation, 167 MB disk space will be freed. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 102s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 102s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 102s Removing libpython3.12t64:s390x (3.12.9-1) ... 102s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 102s Removing libnsl2:s390x (1.3.0-3build3) ... 102s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 102s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 102s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 103s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 103s Processing triggers for libc-bin (2.41-1ubuntu1) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 103s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 103s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 103s + grep -q trusty /etc/lsb-release 103s + [ ! -d /usr/share/doc/unattended-upgrades ] 103s + [ ! -d /usr/share/doc/lxd ] 103s + [ ! -d /usr/share/doc/lxd-client ] 103s + [ ! -d /usr/share/doc/snapd ] 103s + type iptables 103s + cat 103s + chmod 755 /etc/rc.local 103s + . /etc/rc.local 103s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 103s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 103s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 103s + uname -m 103s + [ s390x = ppc64le ] 103s + [ -d /run/systemd/system ] 103s + systemd-detect-virt --quiet --vm 103s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 103s + cat 103s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 103s + echo COMPRESS=lz4 103s autopkgtest [19:00:14]: upgrading testbed (apt dist-upgrade and autopurge) 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 104s Starting 2 pkgProblemResolver with broken count: 0 104s Done 104s Entering ResolveByKeep 104s 104s Calculating upgrade... 104s The following packages will be upgraded: 104s libc-bin libc-dev-bin libc6 libc6-dev locales 104s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Need to get 9512 kB of archives. 104s After this operation, 8192 B of additional disk space will be used. 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 106s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 106s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 109s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 109s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 112s Preconfiguring packages ... 112s Fetched 9512 kB in 7s (1278 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 112s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 112s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 112s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 112s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up libc6:s390x (2.41-1ubuntu2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 112s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 112s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up libc-bin (2.41-1ubuntu2) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 112s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 112s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 112s Setting up locales (2.41-1ubuntu2) ... 113s Generating locales (this might take a while)... 114s en_US.UTF-8... done 114s Generation complete. 114s Setting up libc-dev-bin (2.41-1ubuntu2) ... 114s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 114s Processing triggers for man-db (2.13.0-1) ... 114s Processing triggers for systemd (257.3-1ubuntu3) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s Starting pkgProblemResolver with broken count: 0 116s Starting 2 pkgProblemResolver with broken count: 0 116s Done 116s Solving dependencies... 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s autopkgtest [19:00:27]: rebooting testbed after setup commands that affected boot 136s autopkgtest [19:00:47]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 139s autopkgtest [19:00:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-spatstat.linnet 140s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (dsc) [2484 B] 140s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (tar) [285 kB] 140s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-spatstat.linnet 3.2-5-1 (diff) [3576 B] 141s gpgv: Signature made Tue Feb 25 02:15:15 2025 UTC 141s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 141s gpgv: issuer "plessy@debian.org" 141s gpgv: Can't check signature: No public key 141s dpkg-source: warning: cannot verify inline signature for ./r-cran-spatstat.linnet_3.2-5-1.dsc: no acceptable signature found 141s autopkgtest [19:00:52]: testing package r-cran-spatstat.linnet version 3.2-5-1 141s autopkgtest [19:00:52]: build not needed 147s autopkgtest [19:00:58]: test run-unit-test: preparing testbed 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 147s Starting pkgProblemResolver with broken count: 0 147s Starting 2 pkgProblemResolver with broken count: 0 147s Done 148s The following NEW packages will be installed: 148s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 148s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 148s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 148s libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 148s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 148s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 148s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-abind r-cran-deldir 148s r-cran-goftest r-cran-lattice r-cran-locfit r-cran-matrix r-cran-mgcv 148s r-cran-nlme r-cran-polyclip r-cran-rpart r-cran-spatstat 148s r-cran-spatstat.data r-cran-spatstat.explore r-cran-spatstat.geom 148s r-cran-spatstat.linnet r-cran-spatstat.model r-cran-spatstat.random 148s r-cran-spatstat.sparse r-cran-spatstat.univar r-cran-spatstat.utils 148s r-cran-survival r-cran-tensor unzip x11-common xdg-utils zip 148s 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. 148s Need to get 83.9 MB of archives. 148s After this operation, 136 MB of additional disk space will be used. 148s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 148s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 149s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 150s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 150s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 150s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 150s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 150s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 150s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 150s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 150s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 150s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 151s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 151s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 151s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 151s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 151s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 152s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 152s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 152s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 152s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 152s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 152s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 155s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 155s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 155s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 155s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 155s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 155s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 155s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 155s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 155s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 155s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 156s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 156s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 156s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 156s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 156s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 156s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 157s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 157s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 157s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 157s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 157s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 181s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 181s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB] 182s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-goftest s390x 1.2-3-1 [59.2 kB] 182s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 183s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-locfit s390x 1.5-9.12-1 [539 kB] 183s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 186s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB] 188s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 190s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-polyclip s390x 1.10-7-1 [120 kB] 190s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB] 196s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rpart s390x 4.1.24-1 [672 kB] 197s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.utils s390x 3.1-2-1 [382 kB] 197s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.data all 3.1-4-1 [4047 kB] 201s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.univar s390x 3.1-1-1build1 [313 kB] 201s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.geom s390x 3.3-5-1 [3948 kB] 204s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.random s390x 3.3-2-1 [1173 kB] 205s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tensor all 1.5-4 [15.7 kB] 205s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.sparse s390x 3.1-0-1 [221 kB] 205s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.explore s390x 3.3-4-1 [3294 kB] 208s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.model s390x 3.3-4-1 [3399 kB] 210s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.linnet s390x 3.2-5-1 [1512 kB] 212s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat s390x 3.3-1-1 [4121 kB] 215s Preconfiguring packages ... 215s Fetched 83.9 MB in 1min 7s (1251 kB/s) 215s Selecting previously unselected package libfreetype6:s390x. 215s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 215s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 215s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 215s Selecting previously unselected package fonts-dejavu-mono. 215s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 215s Unpacking fonts-dejavu-mono (2.37-8) ... 215s Selecting previously unselected package fonts-dejavu-core. 215s Preparing to unpack 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libpixman-1-0:s390x (0.44.0-3) ... 216s Selecting previously unselected package libxcb-render0:s390x. 216s Preparing to unpack .../08-libxcb-render0_1.17.0-2_s390x.deb ... 216s Unpacking libxcb-render0:s390x (1.17.0-2) ... 216s Selecting previously unselected package libxcb-shm0:s390x. 216s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_s390x.deb ... 216s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 216s Selecting previously unselected package libxrender1:s390x. 216s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 216s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 216s Selecting previously unselected package libcairo2:s390x. 216s Preparing to unpack .../11-libcairo2_1.18.2-2_s390x.deb ... 216s Unpacking libcairo2:s390x (1.18.2-2) ... 216s Selecting previously unselected package libdatrie1:s390x. 216s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_s390x.deb ... 216s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 216s Selecting previously unselected package libdeflate0:s390x. 216s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ... 216s Unpacking libdeflate0:s390x (1.23-1) ... 216s Selecting previously unselected package libgfortran5:s390x. 216s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 216s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 216s Selecting previously unselected package libgomp1:s390x. 216s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 216s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 216s Selecting previously unselected package libgraphite2-3:s390x. 216s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 216s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 216s Selecting previously unselected package libharfbuzz0b:s390x. 216s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_s390x.deb ... 216s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 216s Selecting previously unselected package x11-common. 216s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 216s Unpacking x11-common (1:7.7+23ubuntu3) ... 216s Selecting previously unselected package libice6:s390x. 216s Preparing to unpack .../19-libice6_2%3a1.1.1-1_s390x.deb ... 216s Unpacking libice6:s390x (2:1.1.1-1) ... 216s Selecting previously unselected package libjpeg-turbo8:s390x. 216s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 216s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 216s Selecting previously unselected package libjpeg8:s390x. 216s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_s390x.deb ... 216s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 216s Selecting previously unselected package liblapack3:s390x. 216s Preparing to unpack .../22-liblapack3_3.12.1-2_s390x.deb ... 216s Unpacking liblapack3:s390x (3.12.1-2) ... 216s Selecting previously unselected package libthai-data. 216s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 216s Unpacking libthai-data (0.1.29-2build1) ... 216s Selecting previously unselected package libthai0:s390x. 216s Preparing to unpack .../24-libthai0_0.1.29-2build1_s390x.deb ... 216s Unpacking libthai0:s390x (0.1.29-2build1) ... 216s Selecting previously unselected package libpango-1.0-0:s390x. 216s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_s390x.deb ... 216s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 216s Selecting previously unselected package libpangoft2-1.0-0:s390x. 216s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 216s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 216s Selecting previously unselected package libpangocairo-1.0-0:s390x. 216s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 216s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 216s Selecting previously unselected package libpaper2:s390x. 216s Preparing to unpack .../28-libpaper2_2.2.5-0.3_s390x.deb ... 216s Unpacking libpaper2:s390x (2.2.5-0.3) ... 216s Selecting previously unselected package libpaper-utils. 216s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_s390x.deb ... 216s Unpacking libpaper-utils (2.2.5-0.3) ... 216s Selecting previously unselected package libsharpyuv0:s390x. 216s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_s390x.deb ... 216s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 216s Selecting previously unselected package libsm6:s390x. 216s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_s390x.deb ... 216s Unpacking libsm6:s390x (2:1.2.4-1) ... 216s Selecting previously unselected package libtcl8.6:s390x. 216s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 216s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 216s Selecting previously unselected package libjbig0:s390x. 216s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 216s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 216s Selecting previously unselected package libwebp7:s390x. 216s Preparing to unpack .../34-libwebp7_1.5.0-0.1_s390x.deb ... 216s Unpacking libwebp7:s390x (1.5.0-0.1) ... 216s Selecting previously unselected package libtiff6:s390x. 216s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 216s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 216s Selecting previously unselected package libxft2:s390x. 216s Preparing to unpack .../36-libxft2_2.3.6-1build1_s390x.deb ... 216s Unpacking libxft2:s390x (2.3.6-1build1) ... 216s Selecting previously unselected package libxss1:s390x. 216s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_s390x.deb ... 216s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 216s Selecting previously unselected package libtk8.6:s390x. 216s Preparing to unpack .../38-libtk8.6_8.6.16-1_s390x.deb ... 216s Unpacking libtk8.6:s390x (8.6.16-1) ... 216s Selecting previously unselected package libxt6t64:s390x. 216s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 216s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 216s Selecting previously unselected package zip. 216s Preparing to unpack .../40-zip_3.0-14ubuntu2_s390x.deb ... 216s Unpacking zip (3.0-14ubuntu2) ... 216s Selecting previously unselected package unzip. 216s Preparing to unpack .../41-unzip_6.0-28ubuntu6_s390x.deb ... 216s Unpacking unzip (6.0-28ubuntu6) ... 216s Selecting previously unselected package xdg-utils. 216s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ... 216s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 216s Selecting previously unselected package r-base-core. 216s Preparing to unpack .../43-r-base-core_4.4.3-1_s390x.deb ... 216s Unpacking r-base-core (4.4.3-1) ... 216s Selecting previously unselected package r-cran-abind. 216s Preparing to unpack .../44-r-cran-abind_1.4-8-1_all.deb ... 216s Unpacking r-cran-abind (1.4-8-1) ... 216s Selecting previously unselected package r-cran-deldir. 216s Preparing to unpack .../45-r-cran-deldir_2.0-4-1build1_s390x.deb ... 216s Unpacking r-cran-deldir (2.0-4-1build1) ... 216s Selecting previously unselected package r-cran-goftest. 216s Preparing to unpack .../46-r-cran-goftest_1.2-3-1_s390x.deb ... 216s Unpacking r-cran-goftest (1.2-3-1) ... 216s Selecting previously unselected package r-cran-lattice. 216s Preparing to unpack .../47-r-cran-lattice_0.22-6-1_s390x.deb ... 216s Unpacking r-cran-lattice (0.22-6-1) ... 216s Selecting previously unselected package r-cran-locfit. 216s Preparing to unpack .../48-r-cran-locfit_1.5-9.12-1_s390x.deb ... 216s Unpacking r-cran-locfit (1.5-9.12-1) ... 216s Selecting previously unselected package r-cran-matrix. 216s Preparing to unpack .../49-r-cran-matrix_1.7-3-1_s390x.deb ... 216s Unpacking r-cran-matrix (1.7-3-1) ... 216s Selecting previously unselected package r-cran-nlme. 216s Preparing to unpack .../50-r-cran-nlme_3.1.167-1_s390x.deb ... 216s Unpacking r-cran-nlme (3.1.167-1) ... 216s Selecting previously unselected package r-cran-mgcv. 216s Preparing to unpack .../51-r-cran-mgcv_1.9-1-1_s390x.deb ... 216s Unpacking r-cran-mgcv (1.9-1-1) ... 216s Selecting previously unselected package r-cran-polyclip. 216s Preparing to unpack .../52-r-cran-polyclip_1.10-7-1_s390x.deb ... 216s Unpacking r-cran-polyclip (1.10-7-1) ... 216s Selecting previously unselected package r-cran-survival. 216s Preparing to unpack .../53-r-cran-survival_3.8-3-1_s390x.deb ... 216s Unpacking r-cran-survival (3.8-3-1) ... 216s Selecting previously unselected package r-cran-rpart. 216s Preparing to unpack .../54-r-cran-rpart_4.1.24-1_s390x.deb ... 216s Unpacking r-cran-rpart (4.1.24-1) ... 216s Selecting previously unselected package r-cran-spatstat.utils. 216s Preparing to unpack .../55-r-cran-spatstat.utils_3.1-2-1_s390x.deb ... 216s Unpacking r-cran-spatstat.utils (3.1-2-1) ... 216s Selecting previously unselected package r-cran-spatstat.data. 216s Preparing to unpack .../56-r-cran-spatstat.data_3.1-4-1_all.deb ... 216s Unpacking r-cran-spatstat.data (3.1-4-1) ... 216s Selecting previously unselected package r-cran-spatstat.univar. 216s Preparing to unpack .../57-r-cran-spatstat.univar_3.1-1-1build1_s390x.deb ... 216s Unpacking r-cran-spatstat.univar (3.1-1-1build1) ... 216s Selecting previously unselected package r-cran-spatstat.geom. 216s Preparing to unpack .../58-r-cran-spatstat.geom_3.3-5-1_s390x.deb ... 216s Unpacking r-cran-spatstat.geom (3.3-5-1) ... 216s Selecting previously unselected package r-cran-spatstat.random. 216s Preparing to unpack .../59-r-cran-spatstat.random_3.3-2-1_s390x.deb ... 216s Unpacking r-cran-spatstat.random (3.3-2-1) ... 216s Selecting previously unselected package r-cran-tensor. 216s Preparing to unpack .../60-r-cran-tensor_1.5-4_all.deb ... 216s Unpacking r-cran-tensor (1.5-4) ... 216s Selecting previously unselected package r-cran-spatstat.sparse. 216s Preparing to unpack .../61-r-cran-spatstat.sparse_3.1-0-1_s390x.deb ... 216s Unpacking r-cran-spatstat.sparse (3.1-0-1) ... 216s Selecting previously unselected package r-cran-spatstat.explore. 216s Preparing to unpack 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... 217s Setting up unzip (6.0-28ubuntu6) ... 217s Setting up x11-common (1:7.7+23ubuntu3) ... 217s Setting up libdeflate0:s390x (1.23-1) ... 217s Setting up libxcb-shm0:s390x (1.17.0-2) ... 217s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 217s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 217s Setting up zip (3.0-14ubuntu2) ... 217s Setting up libblas3:s390x (3.12.1-2) ... 217s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 217s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 217s Setting up fonts-dejavu-mono (2.37-8) ... 217s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 217s Setting up fonts-dejavu-core (2.37-8) ... 217s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 217s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 217s Setting up libwebp7:s390x (1.5.0-0.1) ... 217s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 217s Setting up 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done. 219s Setting up libxft2:s390x (2.3.6-1build1) ... 219s Setting up libtk8.6:s390x (8.6.16-1) ... 219s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 219s Setting up libcairo2:s390x (1.18.2-2) ... 219s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 219s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 219s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 219s Setting up r-base-core (4.4.3-1) ... 219s Creating config file /etc/R/Renviron with new version 219s Setting up r-cran-lattice (0.22-6-1) ... 219s Setting up r-cran-nlme (3.1.167-1) ... 219s Setting up r-cran-spatstat.utils (3.1-2-1) ... 219s Setting up r-cran-locfit (1.5-9.12-1) ... 219s Setting up r-cran-tensor (1.5-4) ... 219s Setting up r-cran-spatstat.univar (3.1-1-1build1) ... 219s Setting up r-cran-abind (1.4-8-1) ... 219s Setting up r-cran-polyclip (1.10-7-1) ... 219s Setting up r-cran-deldir (2.0-4-1build1) ... 219s Setting up r-cran-goftest (1.2-3-1) ... 219s Setting up r-cran-matrix (1.7-3-1) ... 219s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 219s Setting up r-cran-mgcv (1.9-1-1) ... 219s Setting up r-cran-survival (3.8-3-1) ... 219s Setting up r-cran-spatstat.data (3.1-4-1) ... 219s Setting up r-cran-spatstat.geom (3.3-5-1) ... 219s Setting up r-cran-rpart (4.1.24-1) ... 219s Setting up r-cran-spatstat.random (3.3-2-1) ... 219s Setting up r-cran-spatstat.explore (3.3-4-1) ... 219s Setting up r-cran-spatstat.model (3.3-4-1) ... 219s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 219s Setting up r-cran-spatstat (3.3-1-1) ... 219s Processing triggers for install-info (7.1.1-1) ... 219s Processing triggers for libc-bin (2.41-1ubuntu2) ... 219s Processing triggers for man-db (2.13.0-1) ... 222s autopkgtest [19:02:12]: test run-unit-test: [----------------------- 222s BEGIN TEST testsAtoK.R 222s Loading required package: spatstat.linnet 222s Loading required package: spatstat.data 222s 222s R version 4.4.3 (2025-02-28) -- "Trophy Case" 222s Copyright (C) 2025 The R Foundation for Statistical Computing 222s Platform: s390x-ibm-linux-gnu 222s 222s R is free software and comes with ABSOLUTELY NO WARRANTY. 222s You are welcome to redistribute it under certain conditions. 222s Type 'license()' or 'licence()' for distribution details. 222s 222s R is a collaborative project with many contributors. 222s Type 'contributors()' for more information and 222s 'citation()' on how to cite R or R packages in publications. 222s 222s Type 'demo()' for some demos, 'help()' for on-line help, or 222s 'help.start()' for an HTML browser interface to help. 222s Type 'q()' to quit R. 222s 222s > #' 222s > #' Header for all (concatenated) test files 222s > #' 222s > #' Require spatstat.linnet 222s > #' Obtain environment variable controlling tests. 222s > #' 222s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 222s > 222s > require(spatstat.linnet) 222s Loading required package: spatstat.univar 222s spatstat.univar 3.1-1 222s Loading required package: spatstat.geom 222s spatstat.geom 3.3-5 222s Loading required package: spatstat.random 222s spatstat.random 3.3-2 222s Loading required package: spatstat.explore 222s Loading required package: nlme 223s spatstat.explore 3.3-4 223s Loading required package: spatstat.model 223s Loading required package: rpart 223s spatstat.model 3.3-4 223s spatstat.linnet 3.2-5 223s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 223s > ALWAYS <- TRUE 223s > cat(paste("--------- Executing", 223s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 223s + "test code -----------\n")) 223s --------- Executing **RESTRICTED** subset of test code ----------- 223s > #' tests/aucroc.R 223s > #' 223s > #' AUC and ROC code 223s > #' 223s > #' $Revision: 1.6 $ $Date: 2020/11/02 06:26:45 $ 223s > 223s > local({ 223s + if(FULLTEST) { 223s + A <- roc(spiders, "x") 223s + B <- auc(spiders, "y") 223s + fut <- lppm(spiders ~ I(y-x)) 223s + f <- roc(fut) 223s + g <- auc(fut) 223s + } 223s + }) 223s > ## tests/cdf.test.R 223s > 223s > 223s > local({ 223s + NSIM <- 9 223s + op <- spatstat.options(ndummy.min=16, npixel=32) 223s + op <- spatstat.options(ndummy.min=16, npixel=32) 223s + if(ALWAYS) { 223s + ## (3) linear networks 223s + set.seed(42) 223s + X <- runiflpp(20, simplenet) 223s + cdf.test(X, "x") 223s + if(FULLTEST) { 223s + cdf.test(X, "x", "cvm") 223s + cdf.test(X %mark% runif(20), "x") 223s + } 223s + fit <- lppm(X ~1) 223s + cdf.test(fit, "y", "cvm", nsim=NSIM) 223s + if(FULLTEST) { 223s + cdf.test(fit, "y", nsim=NSIM) 223s + cdf.test(fit, "y", "ad", nsim=NSIM) 223s + } 223s + if(FULLTEST) { 223s + ## marked 223s + cdf.test(chicago, "y") 223s + cdf.test(subset(chicago, marks != "assault"), "y") 223s + } 223s + } 223s + reset.spatstat.options() 223s + }) 223s > 223s > 223s > #' 223s > #' tests/cluck.R 223s > #' 223s > #' Tests of "click*" functions 223s > #' using queueing feature of spatstatLocator 223s > #' 223s > #' $Revision: 1.8 $ $Date: 2022/10/23 00:45:36 $ 223s > 223s > local({ 223s + Y <- coords(runiflpp(6, simplenet)) 223s + if(FULLTEST) { 223s + #' clicklpp 223s + spatstat.utils::queueSpatstatLocator(Y) 223s + XL <- clicklpp(simplenet) 223s + } 223s + if(ALWAYS) { 223s + spatstat.utils::queueSpatstatLocator(Y) 223s + XM <- clicklpp(simplenet, n=3, types=c("a", "b")) 223s + } 223s + if(ALWAYS) { 223s + #' lineardisc 223s + plot(simplenet) 223s + spatstat.utils::queueSpatstatLocator(as.ppp(runiflpp(1, simplenet))) 223s + V <- lineardisc(simplenet, r=0.3) 223s + } 223s + }) 223s Ready to click.. 223s Warning messages: 223s 1: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 223s for 'Points of type ‘a’ ' in 'mbcsToSbcs': ' substituted for ‘ (U+2018) 223s 2: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 223s for 'Points of type ‘a’ ' in 'mbcsToSbcs': ' substituted for ’ (U+2019) 223s 3: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 223s for 'Points of type ‘b’ ' in 'mbcsToSbcs': ' substituted for ‘ (U+2018) 223s 4: In title(main = main, cex = cex.main.rela, col = gparam$col.main, : 223s for 'Points of type ‘b’ ' in 'mbcsToSbcs': ' substituted for ’ (U+2019) 223s > #' 223s > #' tests/disconnected.R 223s > #' 223s > #' disconnected linear networks 223s > #' 223s > #' $Revision: 1.4 $ $Date: 2020/04/28 12:58:26 $ 223s > 223s > 223s > local({ 223s + 223s + #' disconnected network 223s + m <- simplenet$m 223s + m[4,5] <- m[5,4] <- m[6,10] <- m[10,6] <- m[4,6] <- m[6,4] <- FALSE 223s + L <- linnet(vertices(simplenet), m) 223s + if(FULLTEST) { 223s + L 223s + summary(L) 223s + is.connected(L) 223s + Z <- connected(L, what="components") 223s + } 223s + 223s + #' point pattern with no points in one connected component 223s + set.seed(42) 223s + X <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L) 223s + B <- lineardirichlet(X) 223s + if(FULLTEST) { 223s + plot(B) 223s + summary(B) 223s + } 223s + if(ALWAYS) { 223s + D <- pairdist(X) 223s + A <- nndist(X) 223s + } 223s + if(FULLTEST) { 223s + H <- nnwhich(X) 223s + Y <- rpoislpp(lambda=function(x,y) { 10 * (x < 0.5)}, L) 223s + G <- nncross(X, Y) 223s + J <- crossdist(X, Y) 223s + plot(distfun(X)) # includes evaluation of nncross(what="dist") 223s + } 223s + 223s + #' K functions in disconnected network 223s + if(ALWAYS) { 223s + K <- linearK(X) 223s + lamX <- intensity(X) 223s + nX <- npoints(X) 223s + KI <- linearKinhom(X, lambda=rep(lamX, nX)) 223s + P <- linearpcf(X) 223s + PJ <- linearpcfinhom(X, lambda=rep(lamX, nX)) 223s + } 223s + Y <- X %mark% factor(rep(1:2, nX)[1:nX]) 223s + if(FULLTEST) { 223s + Y1 <- split(Y)[[1]] 223s + Y2 <- split(Y)[[2]] 223s + KY <- linearKcross(Y) 223s + PY <- linearpcfcross(Y) 223s + KYI <- linearKcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)), 223s + lambdaJ=rep(intensity(Y2), npoints(Y2))) 223s + PYI <- linearpcfcross.inhom(Y, lambdaI=rep(intensity(Y1), npoints(Y1)), 223s + lambdaJ=rep(intensity(Y2), npoints(Y2))) 223s + } 223s + 223s + #' internal utilities 223s + if(FULLTEST) { 223s + K <- ApplyConnected(X, linearK, rule=function(...) list()) 223s + } 223s + }) 223s Warning message: 223s Network is not connected 223s > 223s > 223s > # 223s > # tests/envelopes.R 223s > # 223s > # Test validity of envelope data 223s > # 223s > # $Revision: 1.29 $ $Date: 2024/01/10 13:45:29 $ 223s > # 223s > 223s > local({ 223s + 223s + 223s + 223s + 223s + 223s + 223s + 223s + 223s + 223s + if(FULLTEST) { 223s + X <- runiflpp(10, simplenet) 223s + Xr <- X %mark% runif(10) 223s + Xc <- X %mark% factor(letters[c(1:4,3,2,4:1)]) 223s + X2 <- X %mark% data.frame(height=runif(10), width=runif(10)) 223s + 223s + E <- envelope(X, linearK, nsim=9) 223s + Er <- envelope(Xr, linearK, nsim=9) 223s + Ec <- envelope(Xc, linearK, nsim=9) 223s + E2 <- envelope(X2, linearK, nsim=9) 223s + 223s + Erf <- envelope(Xr, linearK, nsim=9, fix.n=TRUE) 223s + E2f <- envelope(X2, linearK, nsim=9, fix.n=TRUE) 223s + 223s + Ecf <- envelope(Xc, linearK, nsim=9, fix.n=TRUE) 223s + Ecm <- envelope(Xc, linearKcross, nsim=9, fix.n=TRUE, fix.marks=TRUE) 223s + 223s + fut <- lppm(Xc ~ marks) 223s + EEf <- envelope(fut, linearK, fix.n=TRUE) 223s + EEm <- envelope(fut, linearKcross, fix.n=TRUE, fix.marks=TRUE) 223s + } 223s + 223s + ## close 'local' 223s + }) 223s > # 223s > # tests/func.R 223s > # 223s > # $Revision: 1.9 $ $Date: 2022/10/23 00:48:40 $ 223s > # 223s > # Tests of 'funxy' infrastructure etc 223s > 223s > if(FULLTEST) { 223s + local({ 223s + ## Check the peculiar function-building code in funxy 223s + W <- square(1) 223s + f1a <- function(x, y) sqrt(x^2 + y^2) 223s + F1a <- funxy(f1a, W) 223s + Y <- runiflpp(5, simplenet) 223s + b <- F1a(Y) 223s + }) 223s + } 223s > 223s > 223s > #' tests/hypotests.R 223s > #' Hypothesis tests 223s > #' 223s > #' $Revision: 1.10 $ $Date: 2023/07/17 07:30:48 $ 223s > 223s > if(FULLTEST) { 223s + local({ 223s + berman.test(spiders, "x") 223s + berman.test(lppm(spiders ~ x), "y") 223s + 223s + }) 223s + } 223s > # 223s > # tests/imageops.R 223s > # 223s > # $Revision: 1.43 $ $Date: 2023/08/29 01:03:59 $ 223s > # 223s > 223s > 223s > 223s > if(FULLTEST) { 223s + local({ 223s + d <- distmap(cells, dimyx=32) 223s + ## linear networks 223s + ee <- d[simplenet, drop=FALSE] 223s + eev <- d[simplenet] 223s + }) 223s + } 223s > 223s BEGIN TEST testsL.R 223s 223s R version 4.4.3 (2025-02-28) -- "Trophy Case" 223s Copyright (C) 2025 The R Foundation for Statistical Computing 223s Platform: s390x-ibm-linux-gnu 223s 223s R is free software and comes with ABSOLUTELY NO WARRANTY. 223s You are welcome to redistribute it under certain conditions. 223s Type 'license()' or 'licence()' for distribution details. 223s 223s R is a collaborative project with many contributors. 223s Type 'contributors()' for more information and 223s 'citation()' on how to cite R or R packages in publications. 223s 223s Type 'demo()' for some demos, 'help()' for on-line help, or 223s 'help.start()' for an HTML browser interface to help. 223s Type 'q()' to quit R. 223s 223s Loading required package: spatstat.linnet 223s > #' 223s > #' Header for all (concatenated) test files 223s > #' 223s > #' Require spatstat.linnet 223s > #' Obtain environment variable controlling tests. 223s > #' 223s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 223s > 223s > require(spatstat.linnet) 223s Loading required package: spatstat.data 224s Loading required package: spatstat.univar 224s spatstat.univar 3.1-1 224s Loading required package: spatstat.geom 224s spatstat.geom 3.3-5 224s Loading required package: spatstat.random 224s spatstat.random 3.3-2 224s Loading required package: spatstat.explore 224s Loading required package: nlme 224s spatstat.explore 3.3-4 224s Loading required package: spatstat.model 224s Loading required package: rpart 224s spatstat.model 3.3-4 224s spatstat.linnet 3.2-5 224s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 224s > ALWAYS <- TRUE 224s > cat(paste("--------- Executing", 224s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 224s + "test code -----------\n")) 224s --------- Executing **RESTRICTED** subset of test code ----------- 224s > # 224s > # tests/lppstuff.R 224s > # 224s > # Tests for lpp code 224s > # 224s > # $Revision: 1.74 $ $Date: 2025/01/18 03:44:09 $ 224s > 224s > 224s > local({ 224s + if(ALWAYS) { 224s + #' make test data 224s + Xsimple <- runiflpp(6, simplenet) 224s + Xchic <- chicago[c(TRUE, FALSE)] 224s + Xspid <- spiders[c(TRUE, FALSE)] 224s + Xdend <- dendrite[seq_len(npoints(dendrite)) %% 8 == 0] 224s + } 224s + 224s + if(FULLTEST) { 224s + #' lpp class support 224s + Xone <- Xsimple %mark% runif(6) 224s + Xtwo <- Xsimple %mark% data.frame(a=1:6, b=runif(6)) 224s + print(summary(Xone)) 224s + print(summary(Xtwo)) 224s + plot(Xsimple, show.window=TRUE) 224s + plot(Xone) 224s + plot(Xtwo, do.several=FALSE) 224s + #' geometry etc 224s + rotate(Xsimple, pi/3, centre=c(0.2,0.3)) 224s + superimpose.lpp(L=simplenet) 224s + W <- Window(Xsimple) 224s + #' cut.lpp 224s + tes <- lineardirichlet(Xsimple[1:4]) 224s + f <- as.linfun(tes) 224s + Z <- as.linim(f) 224s + cut(Xsimple, tes) 224s + cut(Xsimple, f) 224s + cut(Xsimple, Z) 224s + 224s + #' check 'normalise' option in linearKinhom 224s + fit <- lppm(Xsimple ~x) 224s + K <- linearKinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE) 224s + plot(K) 224s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=FALSE, leaveoneout=FALSE) 224s + plot(g) 224s + K <- linearKinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE) 224s + plot(K) 224s + g <- linearpcfinhom(Xsimple, lambda=fit, normalise=TRUE, leaveoneout=FALSE) 224s + plot(g) 224s + ## other code blocks 224s + K <- linearKinhom(Xsimple, lambda=fit, correction="none", ratio=TRUE) 224s + g <- linearpcf(Xsimple, correction="none", ratio=TRUE) 224s + g1 <- linearpcf(Xsimple[1], ratio=TRUE) 224s + K1 <- linearKcross(dendrite[1], "thin", "thin", ratio=TRUE) 224s + ## check empty patterns OK 224s + X0 <- runiflpp(0, simplenet) 224s + print(X0) 224s + g <- linearpcf(X0, ratio=TRUE) 224s + } 224s + 224s + ## nearest neighbour distances 224s + eps <- sqrt(.Machine$double.eps) 224s + f <- function(mat,k) { apply(mat, 1, function(z,n) { sort(z)[n] }, n=k+1) } 224s + g <- function(mat,k) { apply(mat, 1, function(z,n) { order(z)[n] }, n=k+1) } 224s + 224s + if(ALWAYS) { 224s + nn <- nndist(Xspid) 224s + nnP <- f(pairdist(Xspid), 1) 224s + if(any(abs(nn - nnP) > eps)) 224s + stop("nndist.lpp does not agree with pairdist.lpp") 224s + 224s + nw <- nnwhich(Xspid) 224s + nwP <- g(pairdist(Xspid), 1) 224s + if(any(nw != nwP)) 224s + stop("nnwhich.lpp does not agree with pairdist") 224s + } 224s + 224s + if(FULLTEST) { 224s + #' code blocks in nndist.lpp/nnwhich.lpp 224s + #' non-sparse network, interpreted code 224s + Ad <- nndist(Xspid, method="interpreted") 224s + Aw <- nnwhich(Xspid, method="interpreted") 224s + #' sparse network, older C code 224s + opa <- spatstat.options(Cnndistlpp=FALSE) 224s + Bd <- nndist(dendrite) 224s + Bw <- nnwhich(dendrite) 224s + spatstat.options(opa) 224s + #' undefined nearest neighbours 224s + Ed <- nndist(Xspid[1:3], k=1:3) 224s + Ew <- nnwhich(Xspid[1:3], k=1:3) 224s + 224s + #' trivial cases in nncross.lpp 224s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet), 224s + what="which", format="list")$which 224s + a <- nncross(runiflpp(0, simplenet), runiflpp(1, simplenet), 224s + what="dist", format="list")$dist 224s + } 224s + 224s + if(ALWAYS) { 224s + #' compare algorithms 224s + ZZ <- split(Xchic) 224s + XX <- ZZ$damage 224s + YY <- ZZ$assault 224s + op <- spatstat.options(Cnncrosslpp=FALSE) 224s + a <- nncross(XX, YY) 224s + spatstat.options(Cnncrosslpp=TRUE) 224s + b <- nncross(XX, YY) 224s + if(any(a$which != b$which)) 224s + stop("Inconsistent values of nncross.lpp()$which from different C code") 224s + if(max(abs(a$dist - b$dist)) > eps) 224s + stop("Inconsistent values of nncross.lpp()$dist from different C code") 224s + 224s + spatstat.options(Cnncrosslpp=TRUE) 224s + b2 <- nncross(XX, YY, k=1:2, what="which") 224s + if(any(b2$which.1 != b$which)) 224s + stop("inconsistent values of nncross.lpp()$which from k=1:2 and k=1") 224s + a2 <- nncross(XX, YY, k=1:2, what="dist") 224s + if(max(abs(a2$dist.1 - a$dist)) > eps) 224s + stop("Inconsistent values of nncross.lpp()$dist from k=1:2 and k=1") 224s + 224s + spatstat.options(Cnncrosslpp=TRUE) 224s + ii <- seq_len(npoints(XX)) 224s + w1 <- nnwhich(XX) 224s + w2 <- nncross(XX, XX, iX=ii, iY=ii, what="which") 224s + w3 <- nncross(XX, XX, iX=ii, iY=ii, what="which", method="interpreted") 224s + if(any(w1 != w2)) 224s + stop("nnwhich.lpp disagrees with nncross.lpp(iX, iY)") 224s + if(any(w2 != w3)) 224s + stop("Different results for nncross.lpp(iX, iY, 'which') using R and C") 224s + d1 <- nndist(XX) 224s + d2 <- nncross(XX, XX, iX=ii, iY=ii, what="dist") 224s + d3 <- nncross(XX, XX, iX=ii, iY=ii, what="dist", method="interpreted") 224s + if(max(abs(d1-d2)) > eps) 224s + stop("nndist.lpp disagrees with nncross.lpp(iX, iY)") 224s + if(max(abs(d2-d3)) > eps) 224s + stop("Different results for nncross.lpp(iX, iY, 'dist') using R and C") 224s + spatstat.options(Cnncrosslpp=FALSE) 224s + w4 <- nncross(XX, XX, iX=ii, iY=ii, what="which") 224s + d4 <- nncross(XX, XX, iX=ii, iY=ii, what="dist") 224s + if(any(w2 != w4)) 224s + stop("Different results for nncross.lpp(iX, iY, 'which') fast and slow C") 224s + if(max(abs(d2-d4)) > eps) 224s + stop("Different results for nncross.lpp(iX, iY, 'dist') fast and slow C") 224s + spatstat.options(Cnncrosslpp=TRUE) 224s + } 224s + 224s + reset.spatstat.options() 224s + 224s + if(FULLTEST) { 224s + ## test handling marginal cases 224s + xyd <- nncross(XX, YY[1]) 224s + A <- runiflpp(5, simplenet) 224s + B <- runiflpp(2, simplenet) 224s + aaa <- nncross(A,B,k=3:5) #' all undefined 224s + aaa <- nncross(A,B,k=1:4) #' some undefined 224s + spatstat.options(Cnncrosslpp=FALSE) 224s + aaa <- nncross(A,B,k=3:5) 224s + aaa <- nncross(A,B,k=1:4) 224s + bbb <- nncross(B,A, iX=1:2, iY=1:5) # another code block 224s + spatstat.options(Cnncrosslpp=TRUE) 224s + reset.spatstat.options() 224s + } 224s + 224s + if(FULLTEST) { 224s + ## as.linnet.psp (Suman's example) 224s + Lines <- as.data.frame(as.psp(simplenet)) 224s + newseg <- c(Lines[1,1:2], Lines[10,3:4]) 224s + Lines <- rbind(Lines, newseg) 224s + Y <- as.psp(Lines, window=Window(simplenet)) 224s + marks(Y) <- c(3, 4, 5, 5, 3, 4, 5, 5,5, 5,1) 224s + Z <- as.linnet(Y) # can crash if marks don't match segments 224s + 224s + ## Test linnet surgery code 224s + RL <- joinVertices(simplenet, matrix(c(2,3), ncol=2)) # redundant edge 224s + RZ <- joinVertices(Z, matrix(c(2,3), ncol=2), marks=6) # redundant edge 224s + JZ <- joinVertices(Z, matrix(c(2,7), ncol=2), marks=6) # new edge 224s + set.seed(42) 224s + X <- runiflpp(30, simplenet) 224s + V <- runiflpp(30, simplenet) 224s + XV <- insertVertices(X, V) 224s + validate.lpp.coords(XV, context="calculated by insertVertices") 224s + X0 <- insertVertices(X, x=numeric(0), y=numeric(0)) 224s + ## vertices on boundary of new window 224s + LL <- simplenet[boundingbox(vertices(simplenet))] 224s + 224s + ## thinNetwork for lpp and linim 224s + Xthin <- thinNetwork(X, retainedges=1:3) 224s + D <- density(X, 0.1) 224s + Dthin <- thinNetwork(D, retainedges=1:3) 224s + 224s + ## Test [.lpp internal data 224s + B <- owin(c(0.1,0.7),c(0.19,0.6)) 224s + XB <- X[B] 224s + validate.lpp.coords(XB, context="returned by [.lpp") 224s + } 224s + 224s + ## Tests related to linearK, etc 224s + testcountends <- function(X, r=100, s=1) { 224s + if(s != 1) { 224s + X <- rescale(X, s) 224s + r <- r/s 224s + } 224s + L <- as.linnet(X) 224s + n1 <- countends(L, X[1], r) 224s + n2 <- npoints(lineardisc(L, X[1], r, plotit=FALSE)$endpoints) 224s + if(n1 != n2) 224s + stop(paste("Incorrect result from countends:", 224s + n1, "!=", n2, 224s + spatstat.utils::paren(paste("scale=", 1/s))), 224s + call.=FALSE) 224s + } 224s + 224s + if(ALWAYS) { 224s + ## original scale 224s + XU <- unmark(Xchic) 224s + testcountends(XU) 224s + ## finer scale 224s + testcountends(XU, s=1000) 224s + #' disconnected 224s + L <- thinNetwork(simplenet, retainedges = -c(3,8)) 224s + S <- as.psp(L) 224s + x <- midpoints.psp(S)[1] 224s + len <- lengths_psp(S)[1] 224s + A <- lineardisc(L, x, len, plotit=FALSE) #involves many segments of network 224s + B <- lineardisc(L, x, len/5, plotit=FALSE) # involves one segment of network 224s + op <- spatstat.options(Ccountends=FALSE) 224s + A <- lineardisc(L, x, len, plotit=FALSE) 224s + B <- lineardisc(L, x, len/5, plotit=FALSE) 224s + reset.spatstat.options() 224s + 224s + ## Test algorithms for boundingradius.linnet 224s + L <- as.linnet(chicago, sparse=TRUE) 224s + L$boundingradius <- NULL # artificially remove 224s + opa <- spatstat.options(Clinearradius=FALSE) 224s + bR <- as.linnet(L, sparse=FALSE)$boundingradius 224s + spatstat.options(Clinearradius=TRUE) 224s + bC <- as.linnet(L, sparse=FALSE)$boundingradius 224s + spatstat.options(opa) 224s + if(abs(bR-bC) > 0.001 * (bR+bC)/2) 224s + stop("Disagreement between R and C algorithms for boundingradius.linnet", 224s + call.=FALSE) 224s + } 224s + 224s + if(FULLTEST) { 224s + ## linnet things 224s + is.connected(as.linnet(dendrite)) 224s + zik <- rescale(Xchic, 39.37/12, "m") 224s + Simon <- simplenet 224s + unitname(Simon) <- list("metre", "metres", 0.5) 224s + b <- rescale(Simon) 224s + ds <- density(simplenet, 0.05) 224s + } 224s + 224s + if(ALWAYS) { 224s + ## invoke dist2dpath 224s + LS <- as.linnet(simplenet, sparse=TRUE) 224s + LF <- as.linnet(LS, sparse=FALSE) 224s + ## direct call dist2dpath 224s + d <- simplenet$dpath 225s + d[!simplenet$m] <- Inf 225s + diag(d) <- 0 225s + dd <- dist2dpath(d, method="interpreted") 225s + ra <- range(dd - simplenet$dpath) 225s + if(max(abs(ra)) > sqrt(.Machine$double.eps)) 225s + stop("dist2dpath gives different answers in C and R code") 225s + } 225s + 225s + if(FULLTEST) { 225s + ## integral.linim with missing entries 225s + xcoord <- linfun(function(x,y,seg,tp) { x }, domain(Xchic)) 225s + xcoord <- as.linim(xcoord, dimyx=32) 225s + integral(xcoord) 225s + 225s + ## Math.linim 225s + range(xcoord) 225s + stopifnot(is.linim(sqrt(xcoord))) 225s + stopifnot(is.linim(-xcoord)) 225s + stopifnot(is.linim(xcoord + xcoord)) 225s + stopifnot(is.linim(xcoord/3)) 225s + 225s + ## options to plot.linim 225s + plot(xcoord, legend=FALSE) 225s + plot(xcoord, leg.side="top") 225s + plot(xcoord, style="width", leg.side="bottom") 225s + 225s + ## as.linim.linim 225s + xxcc <- as.linim(xcoord) 225s + xxcceps <- as.linim(xcoord, eps=15) 225s + xxccdel <- as.linim(xcoord, delta=30) 225s + df1 <- attr(xxcc, "df") 225s + df2 <- attr(xxccdel, "df") 225s + df3 <- resampleNetworkDataFrame(df1, df2) 225s + 225s + ## linim with complex values 225s + Zc <- as.im(function(x,y){(x-y) + x * 1i}, Frame(simplenet)) 225s + Fc <- linim(simplenet, Zc) 225s + print(Fc) 225s + print(summary(Fc)) 225s + 225s + ## linim with df provided 225s + Z <- as.im(function(x,y) {x-y}, Frame(simplenet)) 225s + X <- linim(simplenet, Z) 225s + df <- attr(X, "df") 225s + XX <- linim(simplenet, Z, df=df) 225s + dfwithout <- df[, colnames(df) != "values"] 225s + XXX <- linim(simplenet, Z, df=dfwithout) 225s + plot(XXX, zlim=c(-1,1)) 225s + plot(XXX, legend=FALSE) 225s + plot(XXX, leg.side="bottom") 225s + 225s + ## lpp with multiple columns of marks 225s + M <- Xchic 225s + marks(M) <- cbind(type=marks(M), data.frame(distnearest=nndist(M))) 225s + plot(M, main="") 225s + summary(M) 225s + MM <- cut(M) 225s + 225s + #' other cases 225s + CC <- cut(Xchic) 225s + nd <- nndist(Xspid) 225s + SX <- cut(Xspid %mark% nd, breaks=3) 225s + SX <- cut(Xspid, nd, breaks=c(0,100,200,Inf), include.lowest=TRUE) 225s + 225s + ## linequad 225s + Y <- Xsimple %mark% factor(rep(c("A", "B"), 3)) 225s + aX <- linequad(Xsimple) 225s + aY <- linequad(Y) 225s + aXR <- linequad(Xsimple, random=TRUE) 225s + aYR <- linequad(Y, random=TRUE) 225s + P <- as.ppp(Xsimple) 225s + S <- as.psp(domain(Xsimple)) 225s + d <- linequad(P, S) 225s + oop <- spatstat.options(Clinequad=FALSE) 225s + bX <- linequad(Xsimple) 225s + spatstat.options(oop) 225s + 225s + ## other internal utilities 225s + df <- pointsAlongNetwork(simplenet, 0.05) 225s + X <- as.ppp(df[,c("x", "y")], W=Frame(simplenet)) 225s + A <- local2lpp(simplenet, seg=df$seg, tp=df$tp, X=X, df.only=FALSE) 225s + 225s + ## mark-mark scatterplot uses pairdist 225s + X <- runiflpp(20, simplenet) %mark% runif(20) 225s + markmarkscatter(X, 0.2) 225s + markmarkscatter(X[FALSE], 0.1) 225s + 225s + ## tree branches 225s + ## make a simple tree 225s + m <- simplenet$m 225s + m[8,10] <- m[10,8] <- FALSE 225s + L <- linnet(vertices(simplenet), m) 225s + tb <- treebranchlabels(L, 1) 225s + X <- runiflpp(30, L) 225s + ## delete branch B 225s + XminusB <- deletebranch(X, "b", tb) 225s + ## extract branch B 225s + XB <- extractbranch(X, "b", tb) 225s + 225s + ## cases of lintess() 225s + A <- lintess(simplenet) # argument df missing 225s + S <- as.psp(simplenet) 225s + ns <- nsegments(S) 225s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns]) 225s + M <- data.frame(len=lengths_psp(S), ang=angles.psp(S)) 225s + V <- lintess(simplenet, df, marks=M) 225s + 225s + ## methods for class lintess 225s + U <- unmark(V) 225s + U <- unstack(V) 225s + print(summary(V)) 225s + W <- Window(V) 225s + plot(V, style="image") 225s + plot(V, style="width") 225s + 225s + ## linear tessellations infrastructure 225s + nX <- 100 225s + nY <- 20 225s + X <- runiflpp(nX, simplenet) 225s + Y <- runiflpp(nY, simplenet) 225s + tes <- divide.linnet(Y) 225s + cX <- coords(X) 225s + iI <- lineartileindex(cX$seg, cX$tp, tes, method="interpreted") 225s + iC <- lineartileindex(cX$seg, cX$tp, tes, method="C") 225s + iE <- lineartileindex(cX$seg, cX$tp, tes, method="encode") 225s + if(!identical(iI,iC)) 225s + stop("conflicting results from lineartileindex (interpreted vs C)") 225s + if(!identical(iI,iE)) 225s + stop("conflicting results from lineartileindex (interpreted vs encoded)") 225s + iA <- as.linfun(tes)(X) 225s + if(!identical(iI, iA)) 225s + stop("disagreement between as.linfun.lintess and lineartileindex") 225s + 225s + ## intersection of lintess 225s + X <- divide.linnet(runiflpp(4, simplenet)) 225s + Y <- divide.linnet(runiflpp(3, simplenet)) 225s + nX <- summary(X)$nt 225s + nY <- summary(Y)$nt 225s + marks(X) <- factor(letters[1L + (seq_len(nX) %% 2)]) 225s + marks(Y) <- runif(nY) 225s + Zmm <- intersect.lintess(X,Y) 225s + Zum <- intersect.lintess(unmark(X),Y) 225s + Zmu <- intersect.lintess(X,unmark(Y)) 225s + 225s + } 225s + 225s + if(FULLTEST) { 225s + #' handling by 'solist', 'unstack', 'plot.solist' etc 225s + L <- simplenet 225s + X <- runiflpp(5, L) %mark% cbind(a=1:5, b=letters[1:5]) 225s + ns <- nsegments(L) 225s + df <- data.frame(seg=1:ns, t0=0, t1=1, tile=letters[1:ns]) 225s + S <- lintess(L, df) 225s + f <- as.linfun(S) 225s + g <- as.linfun(S, values=seq_len(nsegments(L))) 225s + V <- as.linim(f) 225s + Z <- as.linim(g) 225s + shebang <- solist(L=L, X=X, S=S, f=f, g=g, V=V, Z=Z) 225s + plot(shebang) 225s + plot(shebang, valuesAreColours=FALSE) 225s + kapow <- unstack(shebang) 225s + plot(kapow) 225s + } 225s + 225s + #' kernel density estimation 225s + X <- Xsimple[1:5] 225s + w <- runif(npoints(X)) 225s + if(ALWAYS) { 225s + #' density.lpp -> densityHeat, includes platform-dependent code 225s + D <- density(X, 0.05) 225s + D <- density(X, 0.05, weights=w) 225s + } 225s + if(FULLTEST) { 225s + #' code blocks 225s + D <- density(X[FALSE], 0.05) 225s + D <- density(X, Inf) 225s + D <- density(X, 0.05, finespacing=TRUE) # } 225s + D <- density(X, 0.05, eps=0.008) # } code blocks in resolve.heat.steps 225s + D <- density(X, 0.05, dimyx=256) # } 225s + } 225s + if(ALWAYS) { 225s + DX <- density(X, 0.05, at="points", fastmethod="a", debug=TRUE) 225s + DX <- density(X, 0.05, at="points", fast=FALSE, debug=TRUE) 225s + ## densityfun.lpp, code blocks 225s + ff <- densityfun(X, 0.05, nsigma=Inf) 225s + } 225s + if(FULLTEST) { 225s + #' disconnected network 225s + L <- thinNetwork(simplenet, retainedges=-c(3,5)) 225s + Y <- runiflpp(5, L) 225s + D <- density(Y, 0.05) 225s + D <- density(Y, 0.05, weights=w) 225s + D <- density(Y, Inf) 225s + g <- flatdensityfunlpp(Y, disconnect=FALSE) 225s + a <- flatdensityatpointslpp(Y, disconnect=FALSE) 225s + #' density.lpp -> densityEqualSplit 225s + D <- density(X, 0.05, kernel="e", weights=w) 225s + D <- density(X, Inf, kernel="e") 225s + D <- density(Y, 0.05, kernel="e", weights=w) 225s + D <- density(Y, Inf, kernel="e") 225s + } 225s + if(ALWAYS) { 225s + #' density.lpp -> densityQuick.lpp 225s + D <- density(X, 0.05, distance="e", weights=runif(5)) 225s + } 225s + if(FULLTEST) { 225s + D <- density(X, Inf, distance="e") 225s + D <- density(Y, 0.05, distance="e", weights=runif(5)) 225s + D <- density(Y, Inf, distance="e") 225s + ## example from Andrea Gilardi 225s + ## with duplicated points, and points at a vertex 225s + A <- runiflpp(5, simplenet) 225s + V <- lpp(vertices(simplenet)[2:4], simplenet) 225s + B <- superimpose(A, A[3], V) 225s + D <- density(B, sigma=0.2, distance="e", at="points") 225s + if(length(as.numeric(D)) != npoints(B)) 225s + stop("density.lpp(at='points') returns wrong number of values") 225s + G <- superimpose(U=runiflpp(4, simplenet), B=B) 225s + b <- bw.relrisklpp(G, distance="e", nh=2) 225s + } 225s + if(FULLTEST) { 225s + #' densityVoronoi.lpp and related code 225s + densityVoronoi(X, f=0) 225s + densityVoronoi(X, f=1e-8) 225s + densityVoronoi(X, f=1) 225s + densityVoronoi(X[FALSE], f=0.5) 225s + XX <- X[rep(1:npoints(X), 4)] 225s + densityVoronoi(XX, f=0.99999, nrep=5) 225s + densityVoronoi(Y, f=0) 225s + densityVoronoi(Y, f=1e-8) 225s + densityVoronoi(Y, f=1) 225s + densityVoronoi(Y[FALSE], f=0.5) 225s + #' bandwidth selection 225s + bw.voronoi(X, nrep=4, prob=c(0.2, 0.4, 0.6)) 225s + bw.lppl(X) 225s + sug <- seq(0.1, 0.3, by=0.05) 225s + bw.lppl(X, sigma=sug) 225s + bw.lppl(X, sigma=sug, shortcut=FALSE) 225s + bw.lppl(X, sigma=sug, distance="path", shortcut=FALSE) 225s + } 225s + if(ALWAYS) { 225s + #' inhomogeneous K and g 225s + SD <- split(Xdend) 225s + DT <- density(SD[["thin"]], 100, distance="euclidean") 225s + DS <- density(SD[["stubby"]], 100, distance="euclidean") 225s + Kii <- linearKcross.inhom(dendrite, "thin", "thin", DT, DT) 225s + Kij <- linearKcross.inhom(dendrite, "thin", "stubby", DT, DS, 225s + correction="none", ratio=TRUE) 225s + gii <- linearpcfcross.inhom(dendrite, "thin", "thin", DT, DT) 225s + gij <- linearpcfcross.inhom(dendrite, "thin", "stubby", DT, DS, 225s + correction="none", ratio=TRUE) 225s + } 225s + if(FULLTEST) { 225s + Kx <- linearKcross.inhom(dendrite[1], "thin", "stubby", DT, DS) 225s + gx <- linearpcfcross.inhom(dendrite[1], "thin", "stubby", DT, DS) 225s + } 225s + 225s + if(FULLTEST) { 225s + ## infrastructure for density.lpp 225s + L <- domain(Xchic) 225s + A <- resolve.heat.steps(100, L=L, dx=1) 225s + B <- resolve.heat.steps(100, L=L, dt=0.2) 225s + C <- resolve.heat.steps(100, L=L, niter=1e5) 225s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=3) 225s + C <- resolve.heat.steps(100, L=L, niter=1e5, nsave=Inf) 225s + D <- resolve.heat.steps(100, L=L, dx=1, dt=0.2) 225s + E <- resolve.heat.steps(500, L=L, dt=0.5, iterMax=2e5) 225s + A <- resolve.heat.steps(1, L=simplenet, dt=2, dx=0.05) 225s + B <- resolve.heat.steps(1, L=simplenet) 225s + C <- resolve.heat.steps(1, L=simplenet, finespacing=FALSE) 225s + D <- resolve.heat.steps(1, seglengths=rep(0.7, 5), maxdegree=4, AMbound=7) 225s + ## vertices on boundary 225s + L <- simplenet 225s + L <- L[boundingbox(vertices(L))] 225s + X <- as.lpp(0.41259, 0.6024, L=L) 225s + D <- density(X, 0.1) 225s + } 225s + 225s + if(FULLTEST) { 225s + #' multitype 225s + #' density.splitppx 225s + Z <- split(Xchic)[1:3] 225s + D <- density(Z, 7) 225s + #' relrisk.lpp for 3 types 225s + U <- do.call(superimpose, Z) 225s + A <- relrisk(U, 20, control=1, relative=TRUE) 225s + A <- relrisk(U, 20, control=1, relative=TRUE, at="points") 225s + #' relrisk.lpp for 2 types 225s + V <- do.call(superimpose, Z[1:2]) 225s + A <- relrisk(V, 20, control=2, casecontrol=FALSE) # issues warning 225s + B <- relrisk(V, 20, control="assault", case=2, relative=TRUE) 225s + D <- relrisk(V, 20, control=1, case="burglary", relative=TRUE, at="points") 225s + #' bw.relrisklpp 225s + b1 <- bw.relrisklpp(V, hmax=3, fudge=0.01, 225s + method="leastsquares", reference="sigma") 225s + b2 <- bw.relrisklpp(V, hmax=3, fudge=0.01, 225s + method="KelsallDiggle", reference="uniform") 225s + } 225s + 225s + if(FULLTEST) { 225s + #' pairs.linim 225s + Z <- density(Xsimple, 0.5, distance="euclidean") 225s + pairs(solist(Z)) 225s + pairs(solist(A=Z)) 225s + U <- density(as.ppp(Xsimple), 0.5) 225s + pairs(solist(U, Z)) 225s + pairs(solist(Z, U)) 225s + } 225s + 225s + if(FULLTEST) { 225s + #' complex-valued functions and images 225s + f <- function(x,y,seg,tp) { x + y * 1i } 225s + g <- linfun(f, simplenet) 225s + h <- as.linim(g) 225s + plot(Re(h)) 225s + plot(h) 225s + plot(g) 225s + integral(h) 225s + integral(g) 225s + } 225s + 225s + ## 'lixellate' - involves C code 225s + if(ALWAYS) { 225s + ## Cases where no subdivision occurs 225s + P <- runiflpp(4, simplenet) 225s + A <- lixellate(P, nsplit=1) 225s + B <- lixellate(P, eps=2) 225s + ## bug in 'lixellate' (Jakob Gulddahl Rasmussen) 225s + X <- ppp(c(0,1), c(0,0), owin()) 225s + L <- linnet(X, edges = matrix(1:2, ncol=2)) 225s + Y <- lpp(X, L) 225s + ## The left end point is OK 225s + lixellate(Y[1], nsplit=30) 225s + d <- density(Y[1], .1) 225s + ## The right end point gave an error 225s + lixellate(Y[2], nsplit=30) 225s + d <- density(Y[2], .1) 225s + } 225s + 225s + if(FULLTEST) { 225s + ## make some bad data and repair it 225s + L <- simplenet 225s + ## reverse edges 225s + a <- L$from[c(FALSE,TRUE)] 225s + L$from[c(FALSE,TRUE)] <- L$to[c(FALSE,TRUE)] 225s + L$to[c(FALSE,TRUE)] <- a 225s + ## duplicate edges 225s + ns <- nsegments(L) 225s + ii <- c(seq_len(ns), 2) 225s + L$from <- L$from[ii] 225s + L$to <- L$to[ii] 225s + L$lines <- L$lines[ii] 225s + ## 225s + Y <- repairNetwork(L) 225s + ## add points 225s + X <- runiflpp(4, L) 225s + Z <- repairNetwork(X) 225s + } 225s + 225s + if(FULLTEST) { 225s + #' random generation bugs and code blocks 225s + A <- runiflpp(5, simplenet, nsim=2) 225s + D <- density(A[[1]], 0.3) 225s + B <- rpoislpp(D, nsim=2) 225s + stopifnot(is.multitype(rlpp(c(10,5), list(a=D,b=D)))) 225s + stopifnot(is.multitype(rlpp(5, list(a=D,b=D)))) 225s + stopifnot(is.multitype(rlpp(c(10,5), D))) 225s + } 225s + 225s + ## rhohat.lppm 225s + if(FULLTEST) { 225s + fut <- lppm(Xspid ~ 1) 225s + rx <- rhohat(fut, "x") 225s + Z <- linfun(function(x,y,seg,tp) { x }, domain(Xspid)) 225s + rZ <- rhohat(fut, Z) 225s + U <- predict(rx) 225s + U <- predict(rZ) 225s + Y <- simulate(rx) 225s + Y <- simulate(rZ) 225s + futm <- lppm(Xchic ~ x + marks) 225s + ry <- rhohat(futm, "y") 225s + U <- predict(ry) 225s + Y <- simulate(ry) 225s + } 225s + 225s + if(ALWAYS) { 225s + #' new code for pairdist.lpp 225s + X <- runiflpp(10, simplenet) 225s + dC <- pairdist(X, method="C") 225s + dI <- pairdist(X, method="interpreted") 225s + if(max(abs(dC - dI)) > 0.01) 225s + stop("pairdist.lpp: disagreement between C and R") 225s + XS <- as.lpp(X, sparse=TRUE) 225s + dS <- pairdist(XS) 225s + if(max(abs(dC - dS)) > 0.01) 225s + stop("pairdist.lpp: disagreement between sparse and non-sparse C") 225s + dU <- pairdist(XS, method="testsymm") # secret option 225s + if(max(abs(dS - dU)) > 0.01) 225s + stop("pairdist.lpp: disagreement between symmetric and asymmetric") 225s + 225s + #' new code for crossdist.lpp 225s + #' non-sparse 225s + v <- split(Xchic) 225s + X <- v$cartheft 225s + Y <- v$burglary 225s + dC <- crossdist(X, Y, method="C") 225s + dI <- crossdist(X, Y, method="interpreted") 225s + if(max(abs(dC - dI)) > 0.01) 225s + stop("crossdist.lpp (non-sparse): disagreement between C and R") 225s + #' convert to sparse 225s + Chuck <- as.lpp(Xchic, sparse=TRUE) 225s + V <- split(Chuck) 225s + X <- V$cartheft 225s + Y <- V$burglary 225s + dS <- crossdist(X, Y) 225s + if(max(abs(dS - dC)) > 0.01) 225s + stop("crossdist.lpp: disagreement between sparse and non-sparse") 225s + #' disconnected 225s + L <- thinNetwork(simplenet, retainedges = -c(3,8)) 225s + X <- runiflpp(20, L) 225s + Y <- runiflpp(15, L) 225s + d <- crossdist(X,Y) 225s + 225s + ## example where the path is very long (covers a previous bug) 225s + X <- dendrite[c(349,563)] 225s + a <- pairdist(X, method="testsymm") 225s + if(max(abs(a-t(a))) > 0.01) 225s + stop("pairdist.lpp: asymmetry for long distances") 225s + b <- pairdist(as.lpp(X, sparse=FALSE)) 225s + if(max(abs(a-b)) > 0.01) 225s + stop("pairdist.lpp: disagreement sparse vs non-sparse for long distance") 225s + } 225s + }) 225s sigma = 0.05 225s Network: 225s total length = 2.90485162043096 225s number of edges = 10 225s average nonzero edge length = 0.290485162043096 225s shortest nonzero edge length = 0.150146561419501 225s Determine dx by default rule 225s Mean Nonzero Edge Length/ 30 = 0.00968283873476987 225s Total Network Length/ 100 = 0.0290485162043096 225s Min Nonzero Edge Length/3 = 0.0500488538065003 225s Minimum of the above = 0.00968283873476987 225s Fine spacing rule: dx = 0.00968283873476987 225s Rounded total number of lixels = 300 225s Adjusted dx = 0.00968283873476987 225s Applying full set of constraints 225s dt (determined by all constraints) = 1.27242139521974e-05 225s Number of iterations (determined from dt) = 98 225s Updated dt = 1.27551020408163e-05 225s alpha = 0.136043732774807 225s Final values: 225s Time step dt = 1.27551020408163e-05 225s Sample spacing dx = 0.00968283873476987 225s Number of iterations niter = 98 225s Number of states saved nsave = 1 225s Subdividing network ...Done. 225s New network: 225s Linear network with 299 vertices and 299 lines 225s Vertices are marked 225s Enclosing window: rectangle = [0, 1] x [0, 1] units 225s Constructing update matrix A ..Done. 225s alpha = 0.136043732774807 225s Building initial state ..Done. 225s Running iterative solver ..Done. 225s Mapping results to spatial location ..Done. 225s sigma = 0.05 225s Network: 225s total length = 2.90485162043096 225s number of edges = 10 225s average nonzero edge length = 0.290485162043096 225s shortest nonzero edge length = 0.150146561419501 225s Determine dx by default rule 225s Mean Nonzero Edge Length/ 30 = 0.00968283873476987 225s Total Network Length/ 100 = 0.0290485162043096 225s Min Nonzero Edge Length/3 = 0.0500488538065003 225s Minimum of the above = 0.00968283873476987 225s Fine spacing rule: dx = 0.00968283873476987 225s Rounded total number of lixels = 300 225s Adjusted dx = 0.00968283873476987 225s Applying full set of constraints 225s dt (determined by all constraints) = 1.27242139521974e-05 225s Number of iterations (determined from dt) = 98 225s Updated dt = 1.27551020408163e-05 225s alpha = 0.136043732774807 225s Final values: 225s Time step dt = 1.27551020408163e-05 225s Sample spacing dx = 0.00968283873476987 225s Number of iterations niter = 98 225s Number of states saved nsave = 1 225s Subdividing network ...Done. 225s New network: 225s Linear network with 299 vertices and 299 lines 225s Vertices are marked 225s Enclosing window: rectangle = [0, 1] x [0, 1] units 225s Constructing update matrix A ..Done. 226s alpha = 0.136043732774807 226s Building initial state ..Done. 226s finenet: 226s Linear network with 299 vertices and 299 lines 226s Vertices are marked 226s Enclosing window: rectangle = [0, 1] x [0, 1] units 226s lixelmap: 226s int [1:10] 82 83 24 25 131 132 156 157 264 265 226s lixelweight: 226s num [1:10] 86.2 17.1 50.7 52.6 37.4 ... 226s Processing 5 points ... 1, 2, 3, 4, 226s 5. 227s > 227s > reset.spatstat.options() 227s > 227s > #' 227s > #' lppmodels.R 227s > #' 227s > #' Tests of lppm and class support 227s > #' 227s > #' $Revision: 1.3 $ $Date: 2025/01/18 03:43:52 $ 227s > #' 227s > 227s > 227s > local({ 227s + if(ALWAYS) { 227s + fit0 <- lppm(spiders) 227s + fit1 <- lppm(spiders ~ x) 227s + summary(fit0) 227s + summary(fit1) 227s + pseudoR2(fit0) 227s + pseudoR2(fit1) 227s + } 227s + if(FULLTEST) { 227s + fit2 <- lppm(chicago ~ x+y) 227s + summary(fit2) 227s + pseudoR2(fit2) 227s + } 227s + if(ALWAYS) { 227s + X <- runiflpp(10, simplenet) 227s + Z <- distfun(runiflpp(10, simplenet)) 227s + fit3 <- lppm(X ~ Z) 227s + summary(fit3) 227s + pseudoR2(fit3) 227s + } 227s + 227s + Window(fit1) 227s + 227s + if(ALWAYS) a <- model.images(fit0) 227s + if(FULLTEST) { 227s + a <- model.images(fit1) 227s + a <- model.images(fit2) 227s + a <- model.images(fit3) 227s + } 227s + if(ALWAYS) 227s + b <- model.matrix(fit0) 227s + if(FULLTEST) { 227s + b <- model.matrix(fit1) 227s + b <- model.matrix(fit2) 227s + b <- model.matrix(fit3) 227s + } 227s + 227s + if(ALWAYS) 227s + is.multitype(fit0) 227s + if(FULLTEST) { 227s + is.multitype(fit1) 227s + is.multitype(fit2) 227s + is.multitype(fit3) 227s + } 227s + 227s + if(ALWAYS) fit0e <- emend(fit0) 227s + if(FULLTEST) { 227s + fit1e <- emend(fit1) 227s + fit2e <- emend(fit2) 227s + fit3e <- emend(fit3) 227s + } 227s + 227s + if(FULLTEST) { 227s + #' handling of lintess covariates 227s + df <- data.frame(seg=1:10, t0=0, t1=1, tile=rep(c("A", "B"), 5)) 227s + V <- lintess(simplenet, df) 227s + X <- runiflpp(20, simplenet) 227s + mod <- lppm(X ~ V) 227s + Lam <- predict(mod) 227s + } 227s + 227s + #' fundamental utilities: 227s + #' spatialCovariateEvidence (was: evalCovar) 227s + ycoord <- function(x,y) { y } 227s + if(ALWAYS) YS <- as.linim(ycoord, L=domain(spiders)) 227s + if(FULLTEST) YC <- as.linim(ycoord, L=domain(chicago)) 227s + 227s + if(ALWAYS) aT <- spatialCovariateEvidence(fit1, YS, interpolate=TRUE) 227s + if(FULLTEST) { 227s + aF <- spatialCovariateEvidence(fit1, YS, interpolate=FALSE) 227s + dT <- spatialCovariateEvidence(fit1, ycoord, interpolate=TRUE) 227s + dF <- spatialCovariateEvidence(fit1, ycoord, interpolate=FALSE) 227s + bT <- spatialCovariateEvidence(fit2, YC, interpolate=TRUE) 227s + bF <- spatialCovariateEvidence(fit2, YC, interpolate=FALSE) 227s + cT <- spatialCovariateEvidence(fit2, ycoord, interpolate=TRUE) 227s + cF <- spatialCovariateEvidence(fit2, ycoord, interpolate=FALSE) 227s + } 227s + 227s + }) 227s Point process model on linear network 227s Fitted to point pattern dataset ‘spiders’ 227s Internal fit: Point process model 227s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE) 227s Fitting method: maximum likelihood (Berman-Turner approximation) 227s Model was fitted using glm() 227s Algorithm converged 227s Call: 227s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE), 227s method = "mpl", forcefit = TRUE) 227s Edge correction: “border” 227s [border correction distance r = 0 ] 227s -------------------------------------------------------------------------------- 227s Quadrature scheme (Berman-Turner) = data + dummy + weights 227s 227s Data pattern: 227s Planar point pattern: 48 points 227s Average intensity 3.79e-05 points per square mm 227s Window: rectangle = [0, 1125] x [0, 1125] mm 227s Window area = 1265620 square mm 227s Unit of length: 1 mm 227s 227s Dummy quadrature points: 227s Equally spaced along each segment at spacing eps = 20.22 mm 227s Original parameter nd = 1000 227s 227s Planar point pattern: 1198 points 227s Average intensity 0.000947 points per square mm 227s Window: rectangle = [0, 1125] x [0, 1125] mm 227s Window area = 1265620 square mm 227s Unit of length: 1 mm 227s Quadrature weights: 227s Counting weights based on segment length 227s All weights: 227s range: [3.12, 20.2] total: 20200 227s Weights on data points: 227s range: [4.78, 10.1] total: 466 227s Weights on dummy points: 227s range: [3.12, 20.2] total: 19800 227s -------------------------------------------------------------------------------- 227s FITTED : 227s 227s Stationary Poisson process 227s 227s ---- Intensity: ---- 227s 227s 227s Uniform intensity: 227s [1] 0.002374034 227s 227s Estimate S.E. CI95.lo CI95.hi Ztest Zval 227s (Intercept) -6.043165 0.1443376 -6.326061 -5.760268 *** -41.86827 227s 227s ----------- gory details ----- 227s 227s Fitted regular parameters (theta): 227s (Intercept) 227s -6.043165 227s 227s Fitted exp(theta): 227s (Intercept) 227s 0.002374034 227s 227s Original data: spiders 227s Domain: Linear network with 156 vertices and 203 lines 227s Total length 20218.75 mm 227s Maximum vertex degree: 3 227s [Non-sparse matrix representation] 227s Network is connected 227s Diameter: 2575 mm 227s Bounding radius: 1306.25 mm 227s Numerical tolerance: 0.00625 mm 227s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm 227s Point process model on linear network 227s Fitted to point pattern dataset ‘spiders’ 227s Internal fit: Point process model 227s Fitted to data: linequad(spiders, eps = NULL, nd = 1000, random = FALSE) 227s Fitting method: maximum likelihood (Berman-Turner approximation) 227s Model was fitted using glm() 227s Algorithm converged 227s Call: 227s ppm.quad(Q = linequad(spiders, eps = NULL, nd = 1000, random = FALSE), 227s trend = ~x, interaction = NULL, data = NULL, method = "mpl", 227s forcefit = TRUE) 227s Edge correction: “border” 227s [border correction distance r = 0 ] 227s -------------------------------------------------------------------------------- 227s Quadrature scheme (Berman-Turner) = data + dummy + weights 227s 227s Data pattern: 227s Planar point pattern: 48 points 227s Average intensity 3.79e-05 points per square mm 227s Window: rectangle = [0, 1125] x [0, 1125] mm 227s Window area = 1265620 square mm 227s Unit of length: 1 mm 227s 227s Dummy quadrature points: 227s Equally spaced along each segment at spacing eps = 20.22 mm 227s Original parameter nd = 1000 227s 227s Planar point pattern: 1198 points 227s Average intensity 0.000947 points per square mm 227s Window: rectangle = [0, 1125] x [0, 1125] mm 227s Window area = 1265620 square mm 227s Unit of length: 1 mm 227s Quadrature weights: 227s Counting weights based on segment length 227s All weights: 227s range: [3.12, 20.2] total: 20200 227s Weights on data points: 227s range: [4.78, 10.1] total: 466 227s Weights on dummy points: 227s range: [3.12, 20.2] total: 19800 227s -------------------------------------------------------------------------------- 227s FITTED : 227s 227s Nonstationary Poisson process 227s 227s ---- Intensity: ---- 227s 227s Log intensity: ~x 227s 227s Fitted trend coefficients: 227s (Intercept) x 227s -6.4845961867 0.0007423366 227s 227s Estimate S.E. CI95.lo CI95.hi Ztest 227s (Intercept) -6.4845961867 0.3179208001 -7.1077095048 -5.861482869 *** 227s x 0.0007423366 0.0004467129 -0.0001332047 0.001617878 227s Zval 227s (Intercept) -20.396892 227s x 1.661775 227s 227s ----------- gory details ----- 227s 227s Fitted regular parameters (theta): 227s (Intercept) x 227s -6.4845961867 0.0007423366 227s 227s Fitted exp(theta): 227s (Intercept) x 227s 0.001526777 1.000742612 227s 227s Original data: spiders 227s Domain: Linear network with 156 vertices and 203 lines 227s Total length 20218.75 mm 227s Maximum vertex degree: 3 227s [Non-sparse matrix representation] 227s Network is connected 227s Diameter: 2575 mm 227s Bounding radius: 1306.25 mm 227s Numerical tolerance: 0.00625 mm 227s Enclosing window: rectangle = [0, 1125] x [0, 1125] mm 227s Point process model on linear network 227s Fitted to point pattern dataset ‘X’ 227s Internal fit: Point process model 227s Fitted to data: linequad(X, eps = NULL, nd = 1000, random = FALSE) 227s Fitting method: maximum likelihood (Berman-Turner approximation) 227s Model was fitted using glm() 227s Algorithm converged 227s Call: 227s ppm.quad(Q = linequad(X, eps = NULL, nd = 1000, random = FALSE), 227s trend = ~Z, interaction = NULL, data = NULL, method = "mpl", 227s forcefit = TRUE) 227s Edge correction: “border” 227s [border correction distance r = 0 ] 227s -------------------------------------------------------------------------------- 227s Quadrature scheme (Berman-Turner) = data + dummy + weights 227s 227s Data pattern: 227s Planar point pattern: 10 points 227s Average intensity 10 points per square unit 227s Window: rectangle = [0, 1] x [0, 1] units 227s Window area = 1 square unit 227s 227s Dummy quadrature points: 227s Equally spaced along each segment at spacing eps = 0.002905 units 227s Original parameter nd = 1000 227s 227s Planar point pattern: 1010 points 227s Average intensity 1010 points per square unit 227s Window: rectangle = [0, 1] x [0, 1] units 227s Window area = 1 square unit 227s Quadrature weights: 227s Counting weights based on segment length 227s All weights: 227s range: [0.000763, 0.0029] total: 2.9 227s Weights on data points: 227s range: [0.00145, 0.00145] total: 0.0145 227s Weights on dummy points: 227s range: [0.000763, 0.0029] total: 2.89 227s -------------------------------------------------------------------------------- 227s FITTED : 227s 227s Nonstationary Poisson process 227s 227s ---- Intensity: ---- 227s 227s Log intensity: ~Z 227s Model depends on external covariate ‘Z’ 227s Covariates provided: 227s Z: function(...) 227s 227s Fitted trend coefficients: 227s (Intercept) Z 227s 1.2785621 -0.4421889 227s 227s Estimate S.E. CI95.lo CI95.hi Ztest Zval 227s (Intercept) 1.2785621 0.4706115 0.3561804 2.200944 ** 2.7168098 227s Z -0.4421889 3.7018389 -7.6976598 6.813282 -0.1194511 227s 227s ----------- gory details ----- 227s 227s Fitted regular parameters (theta): 227s (Intercept) Z 227s 1.2785621 -0.4421889 227s 227s Fitted exp(theta): 227s (Intercept) Z 227s 3.5914717 0.6426283 227s 227s Original data: X 227s Domain: Linear network with 10 vertices and 10 lines 227s Total length 2.904852 units 227s Maximum vertex degree: 4 227s [Non-sparse matrix representation] 227s Network is connected 227s Diameter: 1.248943 units 227s Bounding radius: 0.7793609 units 227s Numerical tolerance: 0.0001501466 units 227s Enclosing window: rectangle = [0, 1] x [0, 1] units 227s > 227s > 227s BEGIN TEST testsMtoZ.R 227s 227s R version 4.4.3 (2025-02-28) -- "Trophy Case" 227s Copyright (C) 2025 The R Foundation for Statistical Computing 227s Platform: s390x-ibm-linux-gnu 227s 227s R is free software and comes with ABSOLUTELY NO WARRANTY. 227s You are welcome to redistribute it under certain conditions. 227s Type 'license()' or 'licence()' for distribution details. 227s 227s R is a collaborative project with many contributors. 227s Type 'contributors()' for more information and 227s 'citation()' on how to cite R or R packages in publications. 227s 227s Type 'demo()' for some demos, 'help()' for on-line help, or 227s 'help.start()' for an HTML browser interface to help. 227s Type 'q()' to quit R. 227s 227s > #' 227s > #' Header for all (concatenated) test files 227s > #' 227s > #' Require spatstat.linnet 227s > #' Obtain environment variable controlling tests. 227s > #' 227s > #' $Revision: 1.5 $ $Date: 2020/04/30 05:31:37 $ 227s > 227s > require(spatstat.linnet) 227s Loading required package: spatstat.linnet 227s Loading required package: spatstat.data 228s Loading required package: spatstat.univar 228s spatstat.univar 3.1-1 228s Loading required package: spatstat.geom 228s spatstat.geom 3.3-5 228s Loading required package: spatstat.random 228s spatstat.random 3.3-2 228s Loading required package: spatstat.explore 228s Loading required package: nlme 228s spatstat.explore 3.3-4 228s Loading required package: spatstat.model 228s Loading required package: rpart 228s spatstat.model 3.3-4 228s spatstat.linnet 3.2-5 228s > FULLTEST <- (nchar(Sys.getenv("SPATSTAT_TEST", unset="")) > 0) 228s > ALWAYS <- TRUE 228s > cat(paste("--------- Executing", 228s + if(FULLTEST) "** ALL **" else "**RESTRICTED** subset of", 228s + "test code -----------\n")) 228s --------- Executing **RESTRICTED** subset of test code ----------- 228s > ## 228s > ## tests/segments.R 228s > ## Tests of psp class and related code 228s > ## [SEE ALSO: tests/xysegment.R] 228s > ## 228s > ## $Revision: 1.33 $ $Date: 2022/05/22 08:39:47 $ 228s > 228s > 228s > 228s > 228s > if(FULLTEST) { 228s + local({ 228s + ## more tests of lppm code 228s + fit <- lppm(unmark(chicago) ~ polynom(x,y,2)) 228s + Z <- predict(fit) 228s + }) 228s + } 228s > 228s > # 228s > # tests/undoc.R 228s > # 228s > # $Revision: 1.16 $ $Date: 2020/11/02 07:06:49 $ 228s > # 228s > # Test undocumented hacks, experimental code, etc 228s > 228s > 228s > if(FULLTEST) { 228s + local({ 228s + ## linim helper functions 228s + df <- pointsAlongNetwork(simplenet, 0.2) 228s + }) 228s + } 228s > 228s > ## 228s > ## tests/updateppm.R 228s > ## 228s > ## Check validity of update.ppm 228s > ## 228s > ## $Revision: 1.8 $ $Date: 2022/10/23 01:19:19 $ 228s > 228s > local({ 228s + 228s + if(ALWAYS) { 228s + ## test update.lppm 228s + X <- runiflpp(20, simplenet) 228s + fit0 <- lppm(X ~ 1) 228s + fit1 <- update(fit0, ~ x) 228s + anova(fit0, fit1, test="LR") 228s + cat("update.lppm(fit, ~trend) is OK\n") 228s + fit2 <- update(fit0, . ~ x) 228s + anova(fit0, fit2, test="LR") 228s + cat("update.lppm(fit, . ~ trend) is OK\n") 228s + } 228s + }) 228s update.lppm(fit, ~trend) is OK 228s update.lppm(fit, . ~ trend) is OK 228s > ## 228s > ## tests/xysegment.R 228s > ## [SEE ALSO tests/segments.R] 228s > ## 228s > ## Test weird problems and boundary cases for line segment code 228s > ## 228s > ## $Version$ $Date: 2022/10/23 01:21:09 $ 228s > ## 228s > 228s > 228s > if(FULLTEST) local({ S <- as.psp(simplenet) }) 228s > 228s > 229s autopkgtest [19:02:20]: test run-unit-test: -----------------------] 229s autopkgtest [19:02:20]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 229s run-unit-test PASS 230s autopkgtest [19:02:21]: test pkg-r-autopkgtest: preparing testbed 297s autopkgtest [19:03:28]: testbed dpkg architecture: s390x 297s autopkgtest [19:03:28]: testbed apt version: 2.9.33 297s autopkgtest [19:03:28]: @@@@@@@@@@@@@@@@@@@@ test bed setup 297s autopkgtest [19:03:28]: testbed release detected to be: plucky 298s autopkgtest [19:03:29]: updating testbed package index (apt update) 298s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 299s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 299s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 299s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 299s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 299s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 299s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 299s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 299s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 299s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 299s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 299s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 299s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 299s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 299s Fetched 1073 kB in 1s (1006 kB/s) 300s Reading package lists... 301s + lsb_release --codename --short 301s + RELEASE=plucky 301s + cat 301s + [ plucky != trusty ] 301s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 301s Reading package lists... 301s Building dependency tree... 301s Reading state information... 301s Calculating upgrade... 301s Calculating upgrade... 301s The following packages were automatically installed and are no longer required: 301s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 301s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 301s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 301s linux-tools-6.11.0-8-generic 301s Use 'sudo apt autoremove' to remove them. 301s The following packages will be upgraded: 301s pinentry-curses python3-jinja2 strace 301s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 301s Need to get 652 kB of archives. 301s After this operation, 27.6 kB of additional disk space will be used. 301s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 302s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 302s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 302s Fetched 652 kB in 1s (813 kB/s) 302s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 302s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 302s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 302s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 302s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 302s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 302s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 302s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 302s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 302s Setting up strace (6.13+ds-1ubuntu1) ... 302s Processing triggers for man-db (2.13.0-1) ... 303s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 303s + /usr/lib/apt/apt-helper analyze-pattern ?true 303s + uname -r 303s + sed s/\./\\./g 303s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 303s + apt list ?obsolete 303s + + cut -d/ -f1 303s tail -n+2 303s + grep -v ^linux-.*6\.14\.0-10-generic.* 303s + obsolete_pkgs=linux-headers-6.11.0-8-generic 303s linux-headers-6.11.0-8 303s linux-modules-6.11.0-8-generic 303s linux-tools-6.11.0-8-generic 303s linux-tools-6.11.0-8 303s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 303s Reading package lists... 303s Building dependency tree... 303s Reading state information... 303s Solving dependencies... 303s The following packages will be REMOVED: 303s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 303s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 303s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 303s linux-tools-6.11.0-8-generic* 304s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 304s After this operation, 167 MB disk space will be freed. 304s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 304s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 304s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 304s Removing libpython3.12t64:s390x (3.12.9-1) ... 304s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 304s Removing libnsl2:s390x (1.3.0-3build3) ... 304s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 304s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 304s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 305s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 305s Processing triggers for libc-bin (2.41-1ubuntu1) ... 305s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 305s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 305s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 305s + grep -q trusty /etc/lsb-release 305s + [ ! -d /usr/share/doc/unattended-upgrades ] 305s + [ ! -d /usr/share/doc/lxd ] 305s + [ ! -d /usr/share/doc/lxd-client ] 305s + [ ! -d /usr/share/doc/snapd ] 305s + type iptables 305s + cat 305s + chmod 755 /etc/rc.local 305s + . /etc/rc.local 305s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 305s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 305s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 305s + uname -m 305s + [ s390x = ppc64le ] 305s + [ -d /run/systemd/system ] 305s + systemd-detect-virt --quiet --vm 305s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 305s + cat 305s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 305s + echo COMPRESS=lz4 305s autopkgtest [19:03:36]: upgrading testbed (apt dist-upgrade and autopurge) 305s Reading package lists... 305s Building dependency tree... 305s Reading state information... 305s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 305s Starting 2 pkgProblemResolver with broken count: 0 305s Done 306s Entering ResolveByKeep 306s 306s Calculating upgrade... 306s The following packages will be upgraded: 306s libc-bin libc-dev-bin libc6 libc6-dev locales 306s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 306s Need to get 9512 kB of archives. 306s After this operation, 8192 B of additional disk space will be used. 306s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 307s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 307s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 307s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 308s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 309s Preconfiguring packages ... 309s Fetched 9512 kB in 3s (3796 kB/s) 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 309s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 309s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 309s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 309s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 309s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 309s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 309s Setting up libc6:s390x (2.41-1ubuntu2) ... 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 309s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 309s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 309s Setting up libc-bin (2.41-1ubuntu2) ... 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 309s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 309s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 309s Setting up locales (2.41-1ubuntu2) ... 310s Generating locales (this might take a while)... 310s en_US.UTF-8... done 310s Generation complete. 310s Setting up libc-dev-bin (2.41-1ubuntu2) ... 310s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 310s Processing triggers for man-db (2.13.0-1) ... 311s Processing triggers for systemd (257.3-1ubuntu3) ... 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 312s Starting pkgProblemResolver with broken count: 0 312s Starting 2 pkgProblemResolver with broken count: 0 312s Done 312s Solving dependencies... 312s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 313s autopkgtest [19:03:44]: rebooting testbed after setup commands that affected boot 337s Reading package lists... 337s Building dependency tree... 337s Reading state information... 337s Starting pkgProblemResolver with broken count: 0 337s Starting 2 pkgProblemResolver with broken count: 0 337s Done 337s The following NEW packages will be installed: 337s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 337s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 337s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 337s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 337s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 337s libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev 337s libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev 337s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev 337s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 337s libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3 337s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 337s libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 337s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev 337s libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0 337s libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 337s libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin 337s r-base-core r-base-dev r-cran-abind r-cran-deldir r-cran-goftest 337s r-cran-lattice r-cran-matrix r-cran-mgcv r-cran-nlme r-cran-polyclip 337s r-cran-rpart r-cran-spatstat r-cran-spatstat.data r-cran-spatstat.explore 337s r-cran-spatstat.geom r-cran-spatstat.linnet r-cran-spatstat.model 337s r-cran-spatstat.random r-cran-spatstat.sparse r-cran-spatstat.univar 337s r-cran-spatstat.utils r-cran-survival r-cran-tensor unzip x11-common 337s xdg-utils zip zlib1g-dev 338s 0 upgraded, 116 newly installed, 0 to remove and 0 not upgraded. 338s Need to get 166 MB of archives. 338s After this operation, 414 MB of additional disk space will be used. 338s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 338s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 338s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 340s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 340s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 340s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 340s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 340s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 340s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 340s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 341s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 341s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 341s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 345s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 345s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 345s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 345s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 345s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 347s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 347s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 347s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 347s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 347s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 347s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 347s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 348s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 348s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 348s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 348s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 348s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 348s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 348s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 350s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 350s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 350s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 350s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 350s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 350s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 350s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 350s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 350s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 350s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 350s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 350s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 350s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 350s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 350s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 350s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 350s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 350s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 350s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 350s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 352s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 352s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 352s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 352s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 352s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 352s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 352s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 353s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 354s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 354s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 354s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 354s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 354s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 354s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 354s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 354s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 354s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 354s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 354s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 354s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 354s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 354s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 354s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 354s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 354s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 354s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 354s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 354s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 354s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 354s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 354s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 354s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 354s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 354s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 354s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 354s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 354s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 358s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 358s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 358s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 358s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 358s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 358s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 358s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 358s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deldir s390x 2.0-4-1build1 [271 kB] 358s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-goftest s390x 1.2-3-1 [59.2 kB] 358s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 359s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 359s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB] 360s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB] 361s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-polyclip s390x 1.10-7-1 [120 kB] 361s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB] 363s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rpart s390x 4.1.24-1 [672 kB] 363s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.utils s390x 3.1-2-1 [382 kB] 363s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.data all 3.1-4-1 [4047 kB] 364s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.univar s390x 3.1-1-1build1 [313 kB] 364s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.geom s390x 3.3-5-1 [3948 kB] 365s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.random s390x 3.3-2-1 [1173 kB] 365s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tensor all 1.5-4 [15.7 kB] 365s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.sparse s390x 3.1-0-1 [221 kB] 365s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.explore s390x 3.3-4-1 [3294 kB] 365s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.model s390x 3.3-4-1 [3399 kB] 366s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat.linnet s390x 3.2-5-1 [1512 kB] 366s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-spatstat s390x 3.3-1-1 [4121 kB] 367s Preconfiguring packages ... 367s Fetched 166 MB in 29s (5630 kB/s) 367s Selecting previously unselected package libisl23:s390x. 367s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 367s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 367s Unpacking libisl23:s390x (0.27-1) ... 367s Selecting previously unselected package libmpc3:s390x. 367s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 367s Unpacking libmpc3:s390x (1.3.1-1build2) ... 368s Selecting previously unselected package cpp-14-s390x-linux-gnu. 368s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package cpp-14. 368s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package cpp-s390x-linux-gnu. 368s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 368s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 368s Selecting previously unselected package cpp. 368s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 368s Unpacking cpp (4:14.2.0-1ubuntu1) ... 368s Selecting previously unselected package libcc1-0:s390x. 368s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 368s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 368s Selecting previously unselected package libgomp1:s390x. 368s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 368s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 368s Selecting previously unselected package libitm1:s390x. 368s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 368s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 368s Selecting previously unselected package libasan8:s390x. 368s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 368s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 368s Selecting previously unselected package libubsan1:s390x. 368s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 368s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 368s Selecting previously unselected package libgcc-14-dev:s390x. 368s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package gcc-14-s390x-linux-gnu. 368s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package gcc-14. 368s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package gcc-s390x-linux-gnu. 368s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 368s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 368s Selecting previously unselected package gcc. 368s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 368s Unpacking gcc (4:14.2.0-1ubuntu1) ... 368s Selecting previously unselected package libstdc++-14-dev:s390x. 368s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package g++-14-s390x-linux-gnu. 368s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package g++-14. 368s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 368s Unpacking g++-14 (14.2.0-17ubuntu3) ... 368s Selecting previously unselected package g++-s390x-linux-gnu. 368s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 368s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 368s Selecting previously unselected package g++. 368s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 368s Unpacking g++ (4:14.2.0-1ubuntu1) ... 368s Selecting previously unselected package build-essential. 368s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 368s Unpacking build-essential (12.10ubuntu1) ... 368s Selecting previously unselected package dctrl-tools. 368s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 368s Unpacking dctrl-tools (2.24-3build3) ... 368s Selecting previously unselected package libfreetype6:s390x. 368s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 368s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 368s Selecting previously unselected package fonts-dejavu-mono. 368s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 368s Unpacking fonts-dejavu-mono (2.37-8) ... 368s Selecting previously unselected package fonts-dejavu-core. 368s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 368s Unpacking fonts-dejavu-core (2.37-8) ... 368s Selecting previously unselected package fontconfig-config. 368s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 368s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 368s Selecting previously unselected package libfontconfig1:s390x. 369s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 369s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 369s Selecting previously unselected package fontconfig. 369s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 369s Unpacking fontconfig (2.15.0-2ubuntu1) ... 369s Selecting previously unselected package libgfortran5:s390x. 369s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 369s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 369s Selecting previously unselected package libgfortran-14-dev:s390x. 369s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 369s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 369s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 369s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 369s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 369s Selecting previously unselected package gfortran-14. 369s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 369s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 369s Selecting previously unselected package gfortran-s390x-linux-gnu. 369s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 369s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 369s Selecting previously unselected package gfortran. 369s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 369s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 369s Selecting previously unselected package icu-devtools. 369s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ... 369s Unpacking icu-devtools (76.1-1ubuntu2) ... 369s Selecting previously unselected package libblas3:s390x. 369s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ... 369s Unpacking libblas3:s390x (3.12.1-2) ... 369s Selecting previously unselected package libblas-dev:s390x. 369s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ... 369s Unpacking libblas-dev:s390x (3.12.1-2) ... 369s Selecting previously unselected package libbz2-dev:s390x. 369s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ... 369s Unpacking libbz2-dev:s390x (1.0.8-6) ... 369s Selecting previously unselected package libpixman-1-0:s390x. 369s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ... 369s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 369s Selecting previously unselected package libxcb-render0:s390x. 369s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ... 369s Unpacking libxcb-render0:s390x (1.17.0-2) ... 369s Selecting previously unselected package libxcb-shm0:s390x. 369s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ... 369s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 369s Selecting previously unselected package libxrender1:s390x. 369s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 369s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 369s Selecting previously unselected package libcairo2:s390x. 369s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ... 369s Unpacking libcairo2:s390x (1.18.2-2) ... 369s Selecting previously unselected package libdatrie1:s390x. 369s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ... 369s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 369s Selecting previously unselected package libdeflate0:s390x. 369s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ... 369s Unpacking libdeflate0:s390x (1.23-1) ... 369s Selecting previously unselected package libdeflate-dev:s390x. 369s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ... 369s Unpacking libdeflate-dev:s390x (1.23-1) ... 369s Selecting previously unselected package libgraphite2-3:s390x. 369s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 369s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 369s Selecting previously unselected package libharfbuzz0b:s390x. 369s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ... 369s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 369s Selecting previously unselected package x11-common. 369s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ... 369s Unpacking x11-common (1:7.7+23ubuntu3) ... 369s Selecting previously unselected package libice6:s390x. 369s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ... 369s Unpacking libice6:s390x (2:1.1.1-1) ... 369s Selecting previously unselected package libicu-dev:s390x. 369s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ... 369s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 369s Selecting previously unselected package libjpeg-turbo8:s390x. 369s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 369s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 369s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 369s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 369s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 369s Selecting previously unselected package libjpeg8:s390x. 369s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ... 369s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 369s Selecting previously unselected package libjpeg8-dev:s390x. 369s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 369s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 369s Selecting previously unselected package libjpeg-dev:s390x. 369s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 369s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 369s Selecting previously unselected package liblapack3:s390x. 369s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ... 369s Unpacking liblapack3:s390x (3.12.1-2) ... 369s Selecting previously unselected package liblapack-dev:s390x. 369s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ... 369s Unpacking liblapack-dev:s390x (3.12.1-2) ... 369s Selecting previously unselected package libncurses-dev:s390x. 369s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ... 369s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 369s Selecting previously unselected package libthai-data. 369s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ... 369s Unpacking libthai-data (0.1.29-2build1) ... 369s Selecting previously unselected package libthai0:s390x. 369s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ... 369s Unpacking libthai0:s390x (0.1.29-2build1) ... 369s Selecting previously unselected package libpango-1.0-0:s390x. 369s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ... 369s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 369s Selecting previously unselected package libpangoft2-1.0-0:s390x. 369s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 369s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 369s Selecting previously unselected package libpangocairo-1.0-0:s390x. 369s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 369s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 369s Selecting previously unselected package libpaper2:s390x. 369s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ... 369s Unpacking libpaper2:s390x (2.2.5-0.3) ... 369s Selecting previously unselected package libpaper-utils. 369s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ... 369s Unpacking libpaper-utils (2.2.5-0.3) ... 369s Selecting previously unselected package libpcre2-16-0:s390x. 369s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ... 369s Unpacking libpcre2-16-0:s390x (10.45-1) ... 369s Selecting previously unselected package libpcre2-32-0:s390x. 369s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ... 369s Unpacking libpcre2-32-0:s390x (10.45-1) ... 369s Selecting previously unselected package libpcre2-posix3:s390x. 369s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ... 369s Unpacking libpcre2-posix3:s390x (10.45-1) ... 369s Selecting previously unselected package libpcre2-dev:s390x. 369s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ... 369s Unpacking libpcre2-dev:s390x (10.45-1) ... 369s Selecting previously unselected package libpkgconf3:s390x. 369s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ... 369s Unpacking libpkgconf3:s390x (1.8.1-4) ... 369s Selecting previously unselected package zlib1g-dev:s390x. 369s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 369s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 370s Selecting previously unselected package libpng-dev:s390x. 370s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ... 370s Unpacking libpng-dev:s390x (1.6.47-1) ... 370s Selecting previously unselected package libreadline-dev:s390x. 370s Preparing to unpack .../074-libreadline-dev_8.2-6_s390x.deb ... 370s Unpacking libreadline-dev:s390x (8.2-6) ... 370s Selecting previously unselected package libsharpyuv0:s390x. 370s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ... 370s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 370s Selecting previously unselected package libsm6:s390x. 370s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ... 370s Unpacking libsm6:s390x (2:1.2.4-1) ... 370s Selecting previously unselected package libtcl8.6:s390x. 370s Preparing to unpack .../077-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 370s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 370s Selecting previously unselected package libjbig0:s390x. 370s Preparing to unpack .../078-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 370s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 370s Selecting previously unselected package libwebp7:s390x. 370s Preparing to unpack .../079-libwebp7_1.5.0-0.1_s390x.deb ... 370s Unpacking libwebp7:s390x (1.5.0-0.1) ... 370s Selecting previously unselected package libtiff6:s390x. 370s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 370s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 370s Selecting previously unselected package libxft2:s390x. 370s Preparing to unpack .../081-libxft2_2.3.6-1build1_s390x.deb ... 370s Unpacking libxft2:s390x (2.3.6-1build1) ... 370s Selecting previously unselected package libxss1:s390x. 370s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ... 370s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 370s Selecting previously unselected package libtk8.6:s390x. 370s Preparing to unpack .../083-libtk8.6_8.6.16-1_s390x.deb ... 370s Unpacking libtk8.6:s390x (8.6.16-1) ... 370s Selecting previously unselected package libxt6t64:s390x. 370s Preparing to unpack .../084-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 370s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 370s Selecting previously unselected package zip. 370s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ... 370s Unpacking zip (3.0-14ubuntu2) ... 370s Selecting previously unselected package unzip. 370s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ... 370s Unpacking unzip (6.0-28ubuntu6) ... 370s Selecting previously unselected package xdg-utils. 370s Preparing to unpack .../087-xdg-utils_1.2.1-2ubuntu1_all.deb ... 370s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 370s Selecting previously unselected package r-base-core. 370s Preparing to unpack .../088-r-base-core_4.4.3-1_s390x.deb ... 370s Unpacking r-base-core (4.4.3-1) ... 370s Selecting previously unselected package liblzma-dev:s390x. 370s Preparing to unpack .../089-liblzma-dev_5.6.4-1_s390x.deb ... 370s Unpacking liblzma-dev:s390x (5.6.4-1) ... 370s Selecting previously unselected package pkgconf-bin. 370s Preparing to unpack .../090-pkgconf-bin_1.8.1-4_s390x.deb ... 370s Unpacking pkgconf-bin (1.8.1-4) ... 370s Selecting previously unselected package pkgconf:s390x. 370s Preparing to unpack .../091-pkgconf_1.8.1-4_s390x.deb ... 370s Unpacking pkgconf:s390x (1.8.1-4) ... 370s Selecting previously unselected package libtirpc-dev:s390x. 370s Preparing to unpack .../092-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 370s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 370s Selecting previously unselected package r-base-dev. 370s Preparing to unpack .../093-r-base-dev_4.4.3-1_all.deb ... 370s Unpacking r-base-dev (4.4.3-1) ... 370s Selecting previously unselected package pkg-r-autopkgtest. 370s Preparing to unpack .../094-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 370s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 370s Selecting previously unselected package r-cran-abind. 370s Preparing to unpack .../095-r-cran-abind_1.4-8-1_all.deb ... 370s Unpacking r-cran-abind (1.4-8-1) ... 370s Selecting previously unselected package r-cran-deldir. 370s Preparing to unpack .../096-r-cran-deldir_2.0-4-1build1_s390x.deb ... 370s Unpacking r-cran-deldir (2.0-4-1build1) ... 370s Selecting previously unselected package r-cran-goftest. 370s Preparing to unpack .../097-r-cran-goftest_1.2-3-1_s390x.deb ... 370s Unpacking r-cran-goftest (1.2-3-1) ... 370s Selecting previously unselected package r-cran-lattice. 370s Preparing to unpack .../098-r-cran-lattice_0.22-6-1_s390x.deb ... 370s Unpacking r-cran-lattice (0.22-6-1) ... 370s Selecting previously unselected package r-cran-matrix. 370s Preparing to unpack .../099-r-cran-matrix_1.7-3-1_s390x.deb ... 370s Unpacking r-cran-matrix (1.7-3-1) ... 370s Selecting previously unselected package r-cran-nlme. 370s Preparing to unpack .../100-r-cran-nlme_3.1.167-1_s390x.deb ... 370s Unpacking r-cran-nlme (3.1.167-1) ... 370s Selecting previously unselected package r-cran-mgcv. 370s Preparing to unpack .../101-r-cran-mgcv_1.9-1-1_s390x.deb ... 370s Unpacking r-cran-mgcv (1.9-1-1) ... 370s Selecting previously unselected package r-cran-polyclip. 370s Preparing to unpack .../102-r-cran-polyclip_1.10-7-1_s390x.deb ... 370s Unpacking r-cran-polyclip (1.10-7-1) ... 370s Selecting previously unselected package r-cran-survival. 370s Preparing to unpack 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... 370s Unpacking r-cran-spatstat.geom (3.3-5-1) ... 370s Selecting previously unselected package r-cran-spatstat.random. 370s Preparing to unpack .../109-r-cran-spatstat.random_3.3-2-1_s390x.deb ... 370s Unpacking r-cran-spatstat.random (3.3-2-1) ... 370s Selecting previously unselected package r-cran-tensor. 370s Preparing to unpack .../110-r-cran-tensor_1.5-4_all.deb ... 370s Unpacking r-cran-tensor (1.5-4) ... 370s Selecting previously unselected package r-cran-spatstat.sparse. 370s Preparing to unpack .../111-r-cran-spatstat.sparse_3.1-0-1_s390x.deb ... 370s Unpacking r-cran-spatstat.sparse (3.1-0-1) ... 370s Selecting previously unselected package r-cran-spatstat.explore. 370s Preparing to unpack .../112-r-cran-spatstat.explore_3.3-4-1_s390x.deb ... 370s Unpacking r-cran-spatstat.explore (3.3-4-1) ... 370s Selecting previously unselected package r-cran-spatstat.model. 370s Preparing to unpack .../113-r-cran-spatstat.model_3.3-4-1_s390x.deb ... 370s Unpacking r-cran-spatstat.model (3.3-4-1) ... 370s Selecting previously unselected package r-cran-spatstat.linnet. 370s Preparing to unpack .../114-r-cran-spatstat.linnet_3.2-5-1_s390x.deb ... 370s Unpacking r-cran-spatstat.linnet (3.2-5-1) ... 370s Selecting previously unselected package r-cran-spatstat. 370s Preparing to unpack .../115-r-cran-spatstat_3.3-1-1_s390x.deb ... 370s Unpacking r-cran-spatstat (3.3-1-1) ... 371s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 371s Setting up libpixman-1-0:s390x (0.44.0-3) ... 371s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 371s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 371s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 371s Setting up libdatrie1:s390x (0.2.13-3build1) ... 371s Setting up libxcb-render0:s390x (1.17.0-2) ... 371s Setting up unzip (6.0-28ubuntu6) ... 371s Setting up x11-common (1:7.7+23ubuntu3) ... 371s Setting up libdeflate0:s390x (1.23-1) ... 371s Setting up libxcb-shm0:s390x (1.17.0-2) ... 371s Setting up libreadline-dev:s390x (8.2-6) ... 371s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 371s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 371s Setting up libpcre2-16-0:s390x (10.45-1) ... 371s Setting up zip (3.0-14ubuntu2) ... 371s Setting up libpcre2-32-0:s390x (10.45-1) ... 371s Setting up libblas3:s390x (3.12.1-2) ... 371s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 371s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 371s Setting up libpkgconf3:s390x (1.8.1-4) ... 371s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 371s Setting up fonts-dejavu-mono (2.37-8) ... 371s Setting up libmpc3:s390x (1.3.1-1build2) ... 371s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 371s Setting up icu-devtools (76.1-1ubuntu2) ... 371s Setting up fonts-dejavu-core (2.37-8) ... 371s Setting up pkgconf-bin (1.8.1-4) ... 371s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 371s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 371s Setting up libwebp7:s390x (1.5.0-0.1) ... 371s Setting up liblzma-dev:s390x (5.6.4-1) ... 371s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 371s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 371s Setting up libpcre2-posix3:s390x (10.45-1) ... 371s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 371s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 371s Setting up libthai-data (0.1.29-2build1) ... 371s Setting up libxss1:s390x (1:1.2.3-1build3) ... 371s Setting up libpaper2:s390x (2.2.5-0.3) ... 371s Setting up libisl23:s390x (0.27-1) ... 371s Setting up libdeflate-dev:s390x (1.23-1) ... 371s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 371s Setting up xdg-utils (1.2.1-2ubuntu1) ... 371s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 371s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 371s Setting up libblas-dev:s390x (3.12.1-2) ... 371s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 371s Setting up dctrl-tools (2.24-3build3) ... 371s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 371s Setting up libbz2-dev:s390x (1.0.8-6) ... 371s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 371s Setting up libice6:s390x (2:1.1.1-1) ... 371s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 371s Setting up liblapack3:s390x (3.12.1-2) ... 371s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 371s Setting up libpcre2-dev:s390x (10.45-1) ... 371s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 371s Setting up libpng-dev:s390x (1.6.47-1) ... 371s Setting up libpaper-utils (2.2.5-0.3) ... 371s Setting up pkgconf:s390x (1.8.1-4) ... 371s Setting up libthai0:s390x (0.1.29-2build1) ... 371s Setting up liblapack-dev:s390x (3.12.1-2) ... 371s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 371s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 371s Setting up cpp-14 (14.2.0-17ubuntu3) ... 371s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 371s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 371s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 371s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 371s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 371s Setting up libsm6:s390x (2:1.2.4-1) ... 371s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 371s Setting up fontconfig (2.15.0-2ubuntu1) ... 373s Regenerating fonts cache... done. 373s Setting up libxft2:s390x (2.3.6-1build1) ... 373s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 373s Setting up libtk8.6:s390x (8.6.16-1) ... 373s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 373s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 373s Setting up libcairo2:s390x (1.18.2-2) ... 373s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 373s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 373s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 373s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 373s Setting up cpp (4:14.2.0-1ubuntu1) ... 373s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 373s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 373s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 373s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 373s Setting up gcc-14 (14.2.0-17ubuntu3) ... 373s Setting up r-base-core (4.4.3-1) ... 373s Creating config file /etc/R/Renviron with new version 373s Setting up r-cran-lattice (0.22-6-1) ... 373s Setting up r-cran-nlme (3.1.167-1) ... 373s Setting up r-cran-spatstat.utils (3.1-2-1) ... 373s Setting up r-cran-tensor (1.5-4) ... 373s Setting up g++-14 (14.2.0-17ubuntu3) ... 373s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 373s Setting up r-cran-spatstat.univar (3.1-1-1build1) ... 373s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 373s Setting up r-cran-abind (1.4-8-1) ... 373s Setting up r-cran-polyclip (1.10-7-1) ... 373s Setting up gcc (4:14.2.0-1ubuntu1) ... 373s Setting up r-cran-deldir (2.0-4-1build1) ... 373s Setting up r-cran-goftest (1.2-3-1) ... 373s Setting up r-cran-matrix (1.7-3-1) ... 373s Setting up r-cran-spatstat.sparse (3.1-0-1) ... 373s Setting up r-cran-mgcv (1.9-1-1) ... 373s Setting up g++ (4:14.2.0-1ubuntu1) ... 373s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 373s Setting up build-essential (12.10ubuntu1) ... 373s Setting up r-cran-survival (3.8-3-1) ... 373s Setting up gfortran (4:14.2.0-1ubuntu1) ... 373s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 373s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 373s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 373s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 373s Setting up r-cran-spatstat.data (3.1-4-1) ... 373s Setting up r-cran-spatstat.geom (3.3-5-1) ... 373s Setting up r-base-dev (4.4.3-1) ... 373s Setting up r-cran-rpart (4.1.24-1) ... 373s Setting up r-cran-spatstat.random (3.3-2-1) ... 373s Setting up r-cran-spatstat.explore (3.3-4-1) ... 373s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 373s Setting up r-cran-spatstat.model (3.3-4-1) ... 373s Setting up r-cran-spatstat.linnet (3.2-5-1) ... 373s Setting up r-cran-spatstat (3.3-1-1) ... 373s Processing triggers for install-info (7.1.1-1) ... 373s Processing triggers for libc-bin (2.41-1ubuntu2) ... 373s Processing triggers for man-db (2.13.0-1) ... 377s autopkgtest [19:04:48]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 377s autopkgtest [19:04:48]: test pkg-r-autopkgtest: [----------------------- 377s Test: Try to load the R library spatstat.linnet 377s 377s R version 4.4.3 (2025-02-28) -- "Trophy Case" 377s Copyright (C) 2025 The R Foundation for Statistical Computing 377s Platform: s390x-ibm-linux-gnu 377s 377s R is free software and comes with ABSOLUTELY NO WARRANTY. 377s You are welcome to redistribute it under certain conditions. 377s Type 'license()' or 'licence()' for distribution details. 377s 377s R is a collaborative project with many contributors. 377s Type 'contributors()' for more information and 377s 'citation()' on how to cite R or R packages in publications. 377s 377s Type 'demo()' for some demos, 'help()' for on-line help, or 377s 'help.start()' for an HTML browser interface to help. 377s Type 'q()' to quit R. 377s 377s > library('spatstat.linnet') 377s Loading required package: spatstat.data 378s Loading required package: spatstat.univar 378s spatstat.univar 3.1-1 378s Loading required package: spatstat.geom 378s spatstat.geom 3.3-5 378s Loading required package: spatstat.random 378s spatstat.random 3.3-2 378s Loading required package: spatstat.explore 378s Loading required package: nlme 378s spatstat.explore 3.3-4 378s Loading required package: spatstat.model 378s Loading required package: rpart 378s spatstat.model 3.3-4 378s spatstat.linnet 3.2-5 378s > 378s > 378s Other tests are currently unsupported! 378s They will be progressively added. 378s autopkgtest [19:04:49]: test pkg-r-autopkgtest: -----------------------] 379s autopkgtest [19:04:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 379s pkg-r-autopkgtest PASS 379s autopkgtest [19:04:50]: @@@@@@@@@@@@@@@@@@@@ summary 379s run-unit-test PASS 379s pkg-r-autopkgtest PASS 397s nova [W] Using flock in prodstack6-s390x 397s Creating nova instance adt-plucky-s390x-r-cran-spatstat.linnet-20250315-182830-juju-7f2275-prod-proposed-migration-environment-15-1583ac1e-7262-42d7-9cc6-3985889840f5 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 397s nova [W] Timed out waiting for 64cffed1-1092-4dae-9e70-997cf5952a35 to get deleted. 397s nova [W] Using flock in prodstack6-s390x 397s Creating nova instance adt-plucky-s390x-r-cran-spatstat.linnet-20250315-182830-juju-7f2275-prod-proposed-migration-environment-15-1583ac1e-7262-42d7-9cc6-3985889840f5 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 397s nova [W] Timed out waiting for 62646785-3389-48fe-bacd-05d73bb74d8a to get deleted.