0s autopkgtest [18:21:09]: starting date and time: 2025-03-15 18:21:09+0000
  0s autopkgtest [18:21:09]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [18:21:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ee82y_zq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-qtl --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-5.secgroup --name adt-plucky-s390x-r-cran-qtl-20250315-182109-juju-7f2275-prod-proposed-migration-environment-2-676e8563-b104-4757-ad58-f8f9af5d3095 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 90s autopkgtest [18:22:39]: testbed dpkg architecture: s390x
 91s autopkgtest [18:22:40]: testbed apt version: 2.9.33
 91s autopkgtest [18:22:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 91s autopkgtest [18:22:40]: testbed release detected to be: None
 92s autopkgtest [18:22:41]: updating testbed package index (apt update)
 92s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 92s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 93s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 93s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 93s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
 93s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
 93s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
 93s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
 93s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
 93s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
 93s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
 93s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
 93s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
 93s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
 93s Fetched 1073 kB in 1s (935 kB/s)
 94s Reading package lists...
 95s Reading package lists...
 95s Building dependency tree...
 95s Reading state information...
 95s Calculating upgrade...
 95s Calculating upgrade...
 95s The following packages were automatically installed and are no longer required:
 95s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
 95s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
 95s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
 95s   linux-tools-6.11.0-8-generic
 95s Use 'sudo apt autoremove' to remove them.
 95s The following packages will be upgraded:
 95s   pinentry-curses python3-jinja2 strace
 95s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 95s Need to get 652 kB of archives.
 95s After this operation, 27.6 kB of additional disk space will be used.
 95s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
 96s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
 96s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 96s Fetched 652 kB in 1s (953 kB/s)
 96s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
 96s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
 96s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
 96s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
 96s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
 96s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
 96s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
 96s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
 96s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
 96s Setting up strace (6.13+ds-1ubuntu1) ...
 96s Processing triggers for man-db (2.13.0-1) ...
 97s Reading package lists...
 97s Building dependency tree...
 97s Reading state information...
 97s Solving dependencies...
 97s The following packages will be REMOVED:
 97s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
 97s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
 97s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
 97s   linux-tools-6.11.0-8-generic*
 97s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
 97s After this operation, 167 MB disk space will be freed.
 97s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
 97s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
 97s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
 97s Removing libpython3.12t64:s390x (3.12.9-1) ...
 97s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
 98s Removing libnsl2:s390x (1.3.0-3build3) ...
 98s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
 98s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
 98s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
 98s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 99s Processing triggers for libc-bin (2.41-1ubuntu1) ...
 99s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
 99s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
 99s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 99s autopkgtest [18:22:48]: upgrading testbed (apt dist-upgrade and autopurge)
 99s Reading package lists...
 99s Building dependency tree...
 99s Reading state information...
 99s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 99s Starting 2 pkgProblemResolver with broken count: 0
 99s Done
 99s Entering ResolveByKeep
100s 
100s Calculating upgrade...
100s The following packages will be upgraded:
100s   libc-bin libc-dev-bin libc6 libc6-dev locales
100s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
100s Need to get 9512 kB of archives.
100s After this operation, 8192 B of additional disk space will be used.
100s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
101s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
101s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
103s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
104s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
107s Preconfiguring packages ...
107s Fetched 9512 kB in 7s (1376 kB/s)
107s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
107s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
107s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
107s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
107s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
107s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
107s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
107s Setting up libc6:s390x (2.41-1ubuntu2) ...
107s (Reading database ... 
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
107s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
107s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
107s Setting up libc-bin (2.41-1ubuntu2) ...
107s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
107s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
107s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
108s Setting up locales (2.41-1ubuntu2) ...
108s Generating locales (this might take a while)...
109s   en_US.UTF-8... done
109s Generation complete.
109s Setting up libc-dev-bin (2.41-1ubuntu2) ...
109s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
109s Processing triggers for man-db (2.13.0-1) ...
109s Processing triggers for systemd (257.3-1ubuntu3) ...
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
111s Starting pkgProblemResolver with broken count: 0
111s Starting 2 pkgProblemResolver with broken count: 0
111s Done
111s Solving dependencies...
111s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s autopkgtest [18:23:00]: rebooting testbed after setup commands that affected boot
131s autopkgtest [18:23:20]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
134s autopkgtest [18:23:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-qtl
137s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (dsc) [2088 B]
137s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (tar) [4373 kB]
137s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-qtl 1.70-1 (diff) [7308 B]
137s gpgv: Signature made Fri Sep  6 01:43:46 2024 UTC
137s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
137s gpgv:                issuer "plessy@debian.org"
137s gpgv: Can't check signature: No public key
137s dpkg-source: warning: cannot verify inline signature for ./r-cran-qtl_1.70-1.dsc: no acceptable signature found
137s autopkgtest [18:23:26]: testing package r-cran-qtl version 1.70-1
138s autopkgtest [18:23:27]: build not needed
143s autopkgtest [18:23:32]: test run-unit-test: preparing testbed
144s Reading package lists...
144s Building dependency tree...
144s Reading state information...
144s Starting pkgProblemResolver with broken count: 0
144s Starting 2 pkgProblemResolver with broken count: 0
144s Done
144s The following NEW packages will be installed:
144s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
144s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
144s   libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8
144s   libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
144s   libpaper-utils libpaper2 libpixman-1-0 libruby libruby3.3 libsharpyuv0
144s   libsm6 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7
144s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 r-base-core
144s   r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
144s   r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite
144s   r-cran-lifecycle r-cran-magrittr r-cran-pkgbuild r-cran-pkgload
144s   r-cran-praise r-cran-processx r-cran-ps r-cran-qtl r-cran-r6 r-cran-rlang
144s   r-cran-rprojroot r-cran-testthat r-cran-waldo r-cran-withr rake ruby
144s   ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
144s   ruby-rubygems ruby-sdbm ruby-test-unit ruby-webrick ruby-xmlrpc ruby3.3
144s   rubygems-integration unzip x11-common xdg-utils zip
144s 0 upgraded, 84 newly installed, 0 to remove and 0 not upgraded.
144s Need to get 62.5 MB of archives.
144s After this operation, 142 MB of additional disk space will be used.
144s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
145s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
145s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
145s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
145s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
145s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
146s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
146s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
146s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
146s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
146s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
146s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
146s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
146s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
146s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
146s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
146s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
146s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
146s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
146s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
146s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
146s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
146s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
147s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
147s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
147s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
147s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
147s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
147s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
147s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
147s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x rubygems-integration all 1.19 [5550 B]
147s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x ruby3.3 s390x 3.3.6-1.1ubuntu1 [49.1 kB]
148s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-rubygems all 3.6.3-1 [332 kB]
148s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x ruby s390x 1:3.3~ubuntu3 [3618 B]
148s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x rake all 13.2.1-1 [45.8 kB]
148s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-did-you-mean all 1.6.3-2 [14.8 kB]
148s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-minitest all 5.25.4-2ubuntu1 [48.9 kB]
148s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-net-telnet all 0.2.0-1 [13.3 kB]
148s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-power-assert all 2.0.3-1 [12.0 kB]
148s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-test-unit all 3.6.2-1 [67.0 kB]
148s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-webrick all 1.8.1-1ubuntu1 [52.6 kB]
148s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-xmlrpc all 0.3.3-2 [24.8 kB]
148s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x ruby-sdbm s390x 1.0.0-5build5 [16.3 kB]
148s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libruby3.3 s390x 3.3.6-1.1ubuntu1 [5869 kB]
149s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libruby s390x 1:3.3~ubuntu3 [5038 B]
149s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
149s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
149s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
150s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
150s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
150s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
150s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
150s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
150s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
150s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
150s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
150s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
150s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
150s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
156s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
156s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB]
156s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
156s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB]
156s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
156s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
156s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
156s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
156s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
157s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
157s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
157s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
157s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
157s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
157s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
157s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
157s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
157s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB]
157s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB]
157s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
157s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB]
157s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
157s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-qtl s390x 1.70-1 [5679 kB]
158s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB]
158s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB]
158s Preconfiguring packages ...
158s Fetched 62.5 MB in 14s (4541 kB/s)
158s Selecting previously unselected package libfreetype6:s390x.
158s (Reading database ... 
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158s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
158s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
158s Selecting previously unselected package fonts-dejavu-mono.
158s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
158s Unpacking fonts-dejavu-mono (2.37-8) ...
158s Selecting previously unselected package fonts-dejavu-core.
158s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
158s Unpacking fonts-dejavu-core (2.37-8) ...
158s Selecting previously unselected package fontconfig-config.
158s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
158s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
159s Selecting previously unselected package libfontconfig1:s390x.
159s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
159s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
159s Selecting previously unselected package fontconfig.
159s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
159s Unpacking fontconfig (2.15.0-2ubuntu1) ...
159s Selecting previously unselected package libblas3:s390x.
159s Preparing to unpack .../06-libblas3_3.12.1-2_s390x.deb ...
159s Unpacking libblas3:s390x (3.12.1-2) ...
159s Selecting previously unselected package libpixman-1-0:s390x.
159s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_s390x.deb ...
159s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
159s Selecting previously unselected package libxcb-render0:s390x.
159s Preparing to unpack .../08-libxcb-render0_1.17.0-2_s390x.deb ...
159s Unpacking libxcb-render0:s390x (1.17.0-2) ...
159s Selecting previously unselected package libxcb-shm0:s390x.
159s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_s390x.deb ...
159s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
159s Selecting previously unselected package libxrender1:s390x.
159s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
159s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
159s Selecting previously unselected package libcairo2:s390x.
159s Preparing to unpack .../11-libcairo2_1.18.2-2_s390x.deb ...
159s Unpacking libcairo2:s390x (1.18.2-2) ...
159s Selecting previously unselected package libdatrie1:s390x.
159s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_s390x.deb ...
159s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
159s Selecting previously unselected package libdeflate0:s390x.
159s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ...
159s Unpacking libdeflate0:s390x (1.23-1) ...
159s Selecting previously unselected package libgfortran5:s390x.
159s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
159s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
159s Selecting previously unselected package libgomp1:s390x.
159s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
159s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
159s Selecting previously unselected package libgraphite2-3:s390x.
159s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
159s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
159s Selecting previously unselected package libharfbuzz0b:s390x.
159s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_s390x.deb ...
159s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
159s Selecting previously unselected package x11-common.
159s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ...
159s Unpacking x11-common (1:7.7+23ubuntu3) ...
159s Selecting previously unselected package libice6:s390x.
159s Preparing to unpack .../19-libice6_2%3a1.1.1-1_s390x.deb ...
159s Unpacking libice6:s390x (2:1.1.1-1) ...
159s Selecting previously unselected package libjpeg-turbo8:s390x.
159s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
159s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
159s Selecting previously unselected package libjpeg8:s390x.
159s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_s390x.deb ...
159s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
159s Selecting previously unselected package liblapack3:s390x.
159s Preparing to unpack .../22-liblapack3_3.12.1-2_s390x.deb ...
159s Unpacking liblapack3:s390x (3.12.1-2) ...
159s Selecting previously unselected package libthai-data.
159s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ...
159s Unpacking libthai-data (0.1.29-2build1) ...
159s Selecting previously unselected package libthai0:s390x.
159s Preparing to unpack .../24-libthai0_0.1.29-2build1_s390x.deb ...
159s Unpacking libthai0:s390x (0.1.29-2build1) ...
159s Selecting previously unselected package libpango-1.0-0:s390x.
159s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_s390x.deb ...
159s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
159s Selecting previously unselected package libpangoft2-1.0-0:s390x.
159s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
159s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
159s Selecting previously unselected package libpangocairo-1.0-0:s390x.
159s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
159s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
159s Selecting previously unselected package libpaper2:s390x.
159s Preparing to unpack .../28-libpaper2_2.2.5-0.3_s390x.deb ...
159s Unpacking libpaper2:s390x (2.2.5-0.3) ...
159s Selecting previously unselected package libpaper-utils.
159s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_s390x.deb ...
159s Unpacking libpaper-utils (2.2.5-0.3) ...
159s Selecting previously unselected package rubygems-integration.
159s Preparing to unpack .../30-rubygems-integration_1.19_all.deb ...
159s Unpacking rubygems-integration (1.19) ...
159s Selecting previously unselected package ruby3.3.
159s Preparing to unpack .../31-ruby3.3_3.3.6-1.1ubuntu1_s390x.deb ...
159s Unpacking ruby3.3 (3.3.6-1.1ubuntu1) ...
159s Selecting previously unselected package ruby-rubygems.
159s Preparing to unpack .../32-ruby-rubygems_3.6.3-1_all.deb ...
159s Unpacking ruby-rubygems (3.6.3-1) ...
159s Selecting previously unselected package ruby.
159s Preparing to unpack .../33-ruby_1%3a3.3~ubuntu3_s390x.deb ...
159s Unpacking ruby (1:3.3~ubuntu3) ...
159s Selecting previously unselected package rake.
159s Preparing to unpack .../34-rake_13.2.1-1_all.deb ...
159s Unpacking rake (13.2.1-1) ...
159s Selecting previously unselected package ruby-did-you-mean.
159s Preparing to unpack .../35-ruby-did-you-mean_1.6.3-2_all.deb ...
159s Unpacking ruby-did-you-mean (1.6.3-2) ...
159s Selecting previously unselected package ruby-minitest.
159s Preparing to unpack .../36-ruby-minitest_5.25.4-2ubuntu1_all.deb ...
159s Unpacking ruby-minitest (5.25.4-2ubuntu1) ...
159s Selecting previously unselected package ruby-net-telnet.
159s Preparing to unpack .../37-ruby-net-telnet_0.2.0-1_all.deb ...
159s Unpacking ruby-net-telnet (0.2.0-1) ...
159s Selecting previously unselected package ruby-power-assert.
159s Preparing to unpack .../38-ruby-power-assert_2.0.3-1_all.deb ...
159s Unpacking ruby-power-assert (2.0.3-1) ...
159s Selecting previously unselected package ruby-test-unit.
159s Preparing to unpack .../39-ruby-test-unit_3.6.2-1_all.deb ...
159s Unpacking ruby-test-unit (3.6.2-1) ...
159s Selecting previously unselected package ruby-webrick.
159s Preparing to unpack .../40-ruby-webrick_1.8.1-1ubuntu1_all.deb ...
159s Unpacking ruby-webrick (1.8.1-1ubuntu1) ...
159s Selecting previously unselected package ruby-xmlrpc.
159s Preparing to unpack .../41-ruby-xmlrpc_0.3.3-2_all.deb ...
159s Unpacking ruby-xmlrpc (0.3.3-2) ...
159s Selecting previously unselected package ruby-sdbm:s390x.
159s Preparing to unpack .../42-ruby-sdbm_1.0.0-5build5_s390x.deb ...
159s Unpacking ruby-sdbm:s390x (1.0.0-5build5) ...
159s Selecting previously unselected package libruby3.3:s390x.
159s Preparing to unpack .../43-libruby3.3_3.3.6-1.1ubuntu1_s390x.deb ...
159s Unpacking libruby3.3:s390x (3.3.6-1.1ubuntu1) ...
159s Selecting previously unselected package libruby:s390x.
159s Preparing to unpack .../44-libruby_1%3a3.3~ubuntu3_s390x.deb ...
159s Unpacking libruby:s390x (1:3.3~ubuntu3) ...
159s Selecting previously unselected package libsharpyuv0:s390x.
159s Preparing to unpack .../45-libsharpyuv0_1.5.0-0.1_s390x.deb ...
159s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
159s Selecting previously unselected package libsm6:s390x.
159s Preparing to unpack .../46-libsm6_2%3a1.2.4-1_s390x.deb ...
159s Unpacking libsm6:s390x (2:1.2.4-1) ...
159s Selecting previously unselected package libtcl8.6:s390x.
159s Preparing to unpack .../47-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
159s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
159s Selecting previously unselected package libjbig0:s390x.
159s Preparing to unpack .../48-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
159s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
159s Selecting previously unselected package libwebp7:s390x.
159s Preparing to unpack .../49-libwebp7_1.5.0-0.1_s390x.deb ...
159s Unpacking libwebp7:s390x (1.5.0-0.1) ...
159s Selecting previously unselected package libtiff6:s390x.
159s Preparing to unpack .../50-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
159s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
159s Selecting previously unselected package libxft2:s390x.
159s Preparing to unpack .../51-libxft2_2.3.6-1build1_s390x.deb ...
159s Unpacking libxft2:s390x (2.3.6-1build1) ...
159s Selecting previously unselected package libxss1:s390x.
159s Preparing to unpack .../52-libxss1_1%3a1.2.3-1build3_s390x.deb ...
159s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
159s Selecting previously unselected package libtk8.6:s390x.
159s Preparing to unpack .../53-libtk8.6_8.6.16-1_s390x.deb ...
159s Unpacking libtk8.6:s390x (8.6.16-1) ...
159s Selecting previously unselected package libxt6t64:s390x.
159s Preparing to unpack .../54-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
159s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
159s Selecting previously unselected package zip.
159s Preparing to unpack .../55-zip_3.0-14ubuntu2_s390x.deb ...
159s Unpacking zip (3.0-14ubuntu2) ...
159s Selecting previously unselected package unzip.
159s Preparing to unpack .../56-unzip_6.0-28ubuntu6_s390x.deb ...
159s Unpacking unzip (6.0-28ubuntu6) ...
159s Selecting previously unselected package xdg-utils.
159s Preparing to unpack .../57-xdg-utils_1.2.1-2ubuntu1_all.deb ...
159s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
159s Selecting previously unselected package r-base-core.
159s Preparing to unpack .../58-r-base-core_4.4.3-1_s390x.deb ...
159s Unpacking r-base-core (4.4.3-1) ...
160s Selecting previously unselected package r-cran-brio.
160s Preparing to unpack .../59-r-cran-brio_1.1.5-1_s390x.deb ...
160s Unpacking r-cran-brio (1.1.5-1) ...
160s Selecting previously unselected package r-cran-ps.
160s Preparing to unpack .../60-r-cran-ps_1.9.0-1_s390x.deb ...
160s Unpacking r-cran-ps (1.9.0-1) ...
160s Selecting previously unselected package r-cran-r6.
160s Preparing to unpack .../61-r-cran-r6_2.6.1-1_all.deb ...
160s Unpacking r-cran-r6 (2.6.1-1) ...
160s Selecting previously unselected package r-cran-processx.
160s Preparing to unpack .../62-r-cran-processx_3.8.6-1_s390x.deb ...
160s Unpacking r-cran-processx (3.8.6-1) ...
160s Selecting previously unselected package r-cran-callr.
160s Preparing to unpack .../63-r-cran-callr_3.7.6-1_all.deb ...
160s Unpacking r-cran-callr (3.7.6-1) ...
160s Selecting previously unselected package r-cran-cli.
160s Preparing to unpack .../64-r-cran-cli_3.6.4-1_s390x.deb ...
160s Unpacking r-cran-cli (3.6.4-1) ...
160s Selecting previously unselected package r-cran-crayon.
160s Preparing to unpack .../65-r-cran-crayon_1.5.3-1_all.deb ...
160s Unpacking r-cran-crayon (1.5.3-1) ...
160s Selecting previously unselected package r-cran-desc.
160s Preparing to unpack .../66-r-cran-desc_1.4.3-1_all.deb ...
160s Unpacking r-cran-desc (1.4.3-1) ...
160s Selecting previously unselected package r-cran-diffobj.
160s Preparing to unpack .../67-r-cran-diffobj_0.3.5-1_s390x.deb ...
160s Unpacking r-cran-diffobj (0.3.5-1) ...
160s Selecting previously unselected package r-cran-digest.
160s Preparing to unpack .../68-r-cran-digest_0.6.37-1_s390x.deb ...
160s Unpacking r-cran-digest (0.6.37-1) ...
160s Selecting previously unselected package r-cran-evaluate.
160s Preparing to unpack .../69-r-cran-evaluate_1.0.3-1_all.deb ...
160s Unpacking r-cran-evaluate (1.0.3-1) ...
160s Selecting previously unselected package r-cran-fs.
160s Preparing to unpack .../70-r-cran-fs_1.6.5+dfsg-1_s390x.deb ...
160s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
160s Selecting previously unselected package r-cran-glue.
160s Preparing to unpack .../71-r-cran-glue_1.8.0-1_s390x.deb ...
160s Unpacking r-cran-glue (1.8.0-1) ...
160s Selecting previously unselected package r-cran-jsonlite.
160s Preparing to unpack .../72-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
160s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
160s Selecting previously unselected package r-cran-rlang.
160s Preparing to unpack .../73-r-cran-rlang_1.1.5-1_s390x.deb ...
160s Unpacking r-cran-rlang (1.1.5-1) ...
160s Selecting previously unselected package r-cran-lifecycle.
160s Preparing to unpack .../74-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
160s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
160s Selecting previously unselected package r-cran-magrittr.
160s Preparing to unpack .../75-r-cran-magrittr_2.0.3-1_s390x.deb ...
160s Unpacking r-cran-magrittr (2.0.3-1) ...
160s Selecting previously unselected package r-cran-pkgbuild.
160s Preparing to unpack .../76-r-cran-pkgbuild_1.4.6-1_all.deb ...
160s Unpacking r-cran-pkgbuild (1.4.6-1) ...
160s Selecting previously unselected package r-cran-rprojroot.
160s Preparing to unpack .../77-r-cran-rprojroot_2.0.4-2_all.deb ...
160s Unpacking r-cran-rprojroot (2.0.4-2) ...
160s Selecting previously unselected package r-cran-withr.
160s Preparing to unpack .../78-r-cran-withr_3.0.2+dfsg-1_all.deb ...
160s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
160s Selecting previously unselected package r-cran-pkgload.
160s Preparing to unpack .../79-r-cran-pkgload_1.4.0-1_all.deb ...
160s Unpacking r-cran-pkgload (1.4.0-1) ...
160s Selecting previously unselected package r-cran-praise.
160s Preparing to unpack .../80-r-cran-praise_1.0.0-4build1_all.deb ...
160s Unpacking r-cran-praise (1.0.0-4build1) ...
160s Selecting previously unselected package r-cran-qtl.
160s Preparing to unpack .../81-r-cran-qtl_1.70-1_s390x.deb ...
160s Unpacking r-cran-qtl (1.70-1) ...
160s Selecting previously unselected package r-cran-waldo.
160s Preparing to unpack .../82-r-cran-waldo_0.6.1-2_all.deb ...
160s Unpacking r-cran-waldo (0.6.1-2) ...
160s Selecting previously unselected package r-cran-testthat.
160s Preparing to unpack .../83-r-cran-testthat_3.2.3-1_s390x.deb ...
160s Unpacking r-cran-testthat (3.2.3-1) ...
160s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
160s Setting up libpixman-1-0:s390x (0.44.0-3) ...
160s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
160s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
160s Setting up libdatrie1:s390x (0.2.13-3build1) ...
160s Setting up ruby-power-assert (2.0.3-1) ...
160s Setting up libxcb-render0:s390x (1.17.0-2) ...
160s Setting up unzip (6.0-28ubuntu6) ...
160s Setting up x11-common (1:7.7+23ubuntu3) ...
160s Setting up libdeflate0:s390x (1.23-1) ...
160s Setting up rubygems-integration (1.19) ...
160s Setting up libxcb-shm0:s390x (1.17.0-2) ...
160s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
160s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
160s Setting up ruby-minitest (5.25.4-2ubuntu1) ...
160s Setting up zip (3.0-14ubuntu2) ...
160s Setting up libblas3:s390x (3.12.1-2) ...
160s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
160s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
160s Setting up ruby-test-unit (3.6.2-1) ...
160s Setting up ruby-net-telnet (0.2.0-1) ...
160s Setting up fonts-dejavu-mono (2.37-8) ...
160s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
160s Setting up fonts-dejavu-core (2.37-8) ...
160s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
160s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
160s Setting up libwebp7:s390x (1.5.0-0.1) ...
160s Setting up ruby-webrick (1.8.1-1ubuntu1) ...
160s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
160s Setting up libthai-data (0.1.29-2build1) ...
160s Setting up libxss1:s390x (1:1.2.3-1build3) ...
160s Setting up libpaper2:s390x (2.2.5-0.3) ...
160s Setting up ruby-did-you-mean (1.6.3-2) ...
160s Setting up ruby-xmlrpc (0.3.3-2) ...
160s Setting up xdg-utils (1.2.1-2ubuntu1) ...
160s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
160s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
160s Setting up libice6:s390x (2:1.1.1-1) ...
160s Setting up liblapack3:s390x (3.12.1-2) ...
160s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
160s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
161s Setting up libpaper-utils (2.2.5-0.3) ...
161s Setting up libthai0:s390x (0.1.29-2build1) ...
161s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
161s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
161s Setting up libsm6:s390x (2:1.2.4-1) ...
161s Setting up fontconfig (2.15.0-2ubuntu1) ...
163s Regenerating fonts cache... done.
163s Setting up libxft2:s390x (2.3.6-1build1) ...
163s Setting up libtk8.6:s390x (8.6.16-1) ...
163s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
163s Setting up libcairo2:s390x (1.18.2-2) ...
163s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
163s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
163s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
163s Setting up r-base-core (4.4.3-1) ...
163s Creating config file /etc/R/Renviron with new version
163s Setting up r-cran-crayon (1.5.3-1) ...
163s Setting up r-cran-ps (1.9.0-1) ...
163s Setting up r-cran-r6 (2.6.1-1) ...
163s Setting up r-cran-magrittr (2.0.3-1) ...
163s Setting up r-cran-fs (1.6.5+dfsg-1) ...
163s Setting up r-cran-brio (1.1.5-1) ...
163s Setting up r-cran-diffobj (0.3.5-1) ...
163s Setting up r-cran-rlang (1.1.5-1) ...
163s Setting up r-cran-withr (3.0.2+dfsg-1) ...
163s Setting up r-cran-processx (3.8.6-1) ...
163s Setting up r-cran-praise (1.0.0-4build1) ...
163s Setting up r-cran-digest (0.6.37-1) ...
163s Setting up r-cran-evaluate (1.0.3-1) ...
163s Setting up r-cran-glue (1.8.0-1) ...
163s Setting up r-cran-cli (3.6.4-1) ...
163s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
163s Setting up r-cran-rprojroot (2.0.4-2) ...
163s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
163s Setting up r-cran-waldo (0.6.1-2) ...
163s Setting up r-cran-callr (3.7.6-1) ...
163s Setting up r-cran-desc (1.4.3-1) ...
163s Setting up r-cran-pkgbuild (1.4.6-1) ...
163s Setting up r-cran-pkgload (1.4.0-1) ...
163s Setting up r-cran-testthat (3.2.3-1) ...
163s Setting up libruby:s390x (1:3.3~ubuntu3) ...
163s Setting up ruby-rubygems (3.6.3-1) ...
163s Setting up ruby (1:3.3~ubuntu3) ...
163s Setting up rake (13.2.1-1) ...
163s Setting up ruby-sdbm:s390x (1.0.0-5build5) ...
163s Setting up r-cran-qtl (1.70-1) ...
163s Setting up libruby3.3:s390x (3.3.6-1.1ubuntu1) ...
163s Setting up ruby3.3 (3.3.6-1.1ubuntu1) ...
163s Processing triggers for install-info (7.1.1-1) ...
163s Processing triggers for libc-bin (2.41-1ubuntu2) ...
163s Processing triggers for man-db (2.13.0-1) ...
165s autopkgtest [18:23:54]: test run-unit-test: [-----------------------
165s Warning message:
165s In fixXgeno.f2(cross, alleles) :
165s    --Assuming that all individuals are female.
165s 
165s Warning message:
165s In fixXgeno.f2(cross, alleles) :
165s    --Assuming that all individuals are female.
165s 
165s Warning message:
165s In fixXgeno.f2(cross, alleles) :
165s    --Assuming that all individuals are female.
165s 
165s Warning message:
165s In fixXgeno.f2(cross, alleles) :
165s    --Assuming that all individuals are female.
165s 
165s 	Crosses are identical.
165s Test test_io.R passed
167s 	Crosses are identical.
167s Test test_mapqtl_io.R passed
167s Warning message:
167s In checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata,  :
167s   Dropping 4 individuals with missing phenotypes.
167s 
167s Warning message:
167s In mqmaugment(listeria, minprob = 1, verbose = TRUE) :
167s   MQM not yet available for the X chromosome; omitting chr X
167s Warning message:
167s In omit_x_chr(cross) : Omitting X chromosome (X)
169s Warning message:
169s In omit_x_chr(cross) : Omitting X chromosome (X)
169s Test test_qtl.R passed
172s Test test_scanonevar.R passed
172s Test test_tidyIO.R passed
172s 	Crosses are identical.
173s Warning message:
173s In mqmaugment(cross, ...) :
173s   MQM not yet available for the X chromosome; omitting chr X
173s Test testaugmentation.R passed
174s Loading required package: qtl
187s Test testthat.R passed
187s autopkgtest [18:24:16]: test run-unit-test: -----------------------]
188s autopkgtest [18:24:17]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
188s run-unit-test        PASS
188s autopkgtest [18:24:17]: test pkg-r-autopkgtest: preparing testbed
189s Reading package lists...
189s Building dependency tree...
189s Reading state information...
189s Starting pkgProblemResolver with broken count: 0
189s Starting 2 pkgProblemResolver with broken count: 0
189s Done
189s The following NEW packages will be installed:
189s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
189s   dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
189s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
189s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
189s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
189s   libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev
189s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3
189s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
189s   libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
189s   libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
189s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded.
189s Need to get 82.3 MB of archives.
189s After this operation, 279 MB of additional disk space will be used.
189s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
190s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
190s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
191s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
191s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
191s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
191s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
191s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
191s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
192s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
192s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
192s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
194s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
194s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
194s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
194s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
194s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
195s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
195s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
195s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
195s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
195s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
195s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
195s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
196s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
196s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
196s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
196s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
196s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
196s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
196s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
196s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
197s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
197s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
197s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
197s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
197s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
197s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
197s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
197s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
197s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
197s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
197s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
197s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
197s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
197s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
197s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
197s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
197s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
197s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
197s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
198s Fetched 82.3 MB in 8s (9840 kB/s)
198s Selecting previously unselected package libisl23:s390x.
198s (Reading database ... 
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(Reading database ... 64923 files and directories currently installed.)
198s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
198s Unpacking libisl23:s390x (0.27-1) ...
198s Selecting previously unselected package libmpc3:s390x.
198s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
198s Unpacking libmpc3:s390x (1.3.1-1build2) ...
198s Selecting previously unselected package cpp-14-s390x-linux-gnu.
198s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
198s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
198s Selecting previously unselected package cpp-14.
198s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
198s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
198s Selecting previously unselected package cpp-s390x-linux-gnu.
198s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
198s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
198s Selecting previously unselected package cpp.
198s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
198s Unpacking cpp (4:14.2.0-1ubuntu1) ...
198s Selecting previously unselected package libcc1-0:s390x.
198s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
198s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
198s Selecting previously unselected package libitm1:s390x.
198s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_s390x.deb ...
198s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
198s Selecting previously unselected package libasan8:s390x.
198s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_s390x.deb ...
198s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
198s Selecting previously unselected package libubsan1:s390x.
198s Preparing to unpack .../09-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
198s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
198s Selecting previously unselected package libgcc-14-dev:s390x.
198s Preparing to unpack .../10-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
198s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
198s Selecting previously unselected package gcc-14-s390x-linux-gnu.
198s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
198s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
198s Selecting previously unselected package gcc-14.
198s Preparing to unpack .../12-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
198s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
198s Selecting previously unselected package gcc-s390x-linux-gnu.
198s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
198s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
198s Selecting previously unselected package gcc.
198s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
198s Unpacking gcc (4:14.2.0-1ubuntu1) ...
198s Selecting previously unselected package libstdc++-14-dev:s390x.
198s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
198s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
199s Selecting previously unselected package g++-14-s390x-linux-gnu.
199s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
199s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
199s Selecting previously unselected package g++-14.
199s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ...
199s Unpacking g++-14 (14.2.0-17ubuntu3) ...
199s Selecting previously unselected package g++-s390x-linux-gnu.
199s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
199s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
199s Selecting previously unselected package g++.
199s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
199s Unpacking g++ (4:14.2.0-1ubuntu1) ...
199s Selecting previously unselected package build-essential.
199s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ...
199s Unpacking build-essential (12.10ubuntu1) ...
199s Selecting previously unselected package dctrl-tools.
199s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ...
199s Unpacking dctrl-tools (2.24-3build3) ...
199s Selecting previously unselected package libgfortran-14-dev:s390x.
199s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
199s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
199s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
199s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
199s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
199s Selecting previously unselected package gfortran-14.
199s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
199s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
199s Selecting previously unselected package gfortran-s390x-linux-gnu.
199s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
199s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
199s Selecting previously unselected package gfortran.
199s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
199s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
199s Selecting previously unselected package icu-devtools.
199s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ...
199s Unpacking icu-devtools (76.1-1ubuntu2) ...
199s Selecting previously unselected package libblas-dev:s390x.
199s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ...
199s Unpacking libblas-dev:s390x (3.12.1-2) ...
199s Selecting previously unselected package libbz2-dev:s390x.
199s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ...
199s Unpacking libbz2-dev:s390x (1.0.8-6) ...
199s Selecting previously unselected package libdeflate-dev:s390x.
199s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ...
199s Unpacking libdeflate-dev:s390x (1.23-1) ...
199s Selecting previously unselected package libicu-dev:s390x.
199s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ...
199s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
199s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
199s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
199s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
199s Selecting previously unselected package libjpeg8-dev:s390x.
199s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
199s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
199s Selecting previously unselected package libjpeg-dev:s390x.
199s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
199s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
199s Selecting previously unselected package liblapack-dev:s390x.
199s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ...
199s Unpacking liblapack-dev:s390x (3.12.1-2) ...
199s Selecting previously unselected package libncurses-dev:s390x.
199s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ...
199s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
199s Selecting previously unselected package libpcre2-16-0:s390x.
199s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ...
199s Unpacking libpcre2-16-0:s390x (10.45-1) ...
199s Selecting previously unselected package libpcre2-32-0:s390x.
199s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ...
199s Unpacking libpcre2-32-0:s390x (10.45-1) ...
199s Selecting previously unselected package libpcre2-posix3:s390x.
199s Preparing to unpack .../39-libpcre2-posix3_10.45-1_s390x.deb ...
199s Unpacking libpcre2-posix3:s390x (10.45-1) ...
199s Selecting previously unselected package libpcre2-dev:s390x.
199s Preparing to unpack .../40-libpcre2-dev_10.45-1_s390x.deb ...
199s Unpacking libpcre2-dev:s390x (10.45-1) ...
199s Selecting previously unselected package libpkgconf3:s390x.
199s Preparing to unpack .../41-libpkgconf3_1.8.1-4_s390x.deb ...
199s Unpacking libpkgconf3:s390x (1.8.1-4) ...
199s Selecting previously unselected package zlib1g-dev:s390x.
199s Preparing to unpack .../42-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
199s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
199s Selecting previously unselected package libpng-dev:s390x.
199s Preparing to unpack .../43-libpng-dev_1.6.47-1_s390x.deb ...
199s Unpacking libpng-dev:s390x (1.6.47-1) ...
199s Selecting previously unselected package libreadline-dev:s390x.
199s Preparing to unpack .../44-libreadline-dev_8.2-6_s390x.deb ...
199s Unpacking libreadline-dev:s390x (8.2-6) ...
199s Selecting previously unselected package liblzma-dev:s390x.
199s Preparing to unpack .../45-liblzma-dev_5.6.4-1_s390x.deb ...
199s Unpacking liblzma-dev:s390x (5.6.4-1) ...
199s Selecting previously unselected package pkgconf-bin.
199s Preparing to unpack .../46-pkgconf-bin_1.8.1-4_s390x.deb ...
199s Unpacking pkgconf-bin (1.8.1-4) ...
199s Selecting previously unselected package pkgconf:s390x.
199s Preparing to unpack .../47-pkgconf_1.8.1-4_s390x.deb ...
199s Unpacking pkgconf:s390x (1.8.1-4) ...
199s Selecting previously unselected package libtirpc-dev:s390x.
200s Preparing to unpack .../48-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
200s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
200s Selecting previously unselected package r-base-dev.
200s Preparing to unpack .../49-r-base-dev_4.4.3-1_all.deb ...
200s Unpacking r-base-dev (4.4.3-1) ...
200s Selecting previously unselected package pkg-r-autopkgtest.
200s Preparing to unpack .../50-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
200s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
200s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
200s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
200s Setting up libreadline-dev:s390x (8.2-6) ...
200s Setting up libpcre2-16-0:s390x (10.45-1) ...
200s Setting up libpcre2-32-0:s390x (10.45-1) ...
200s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
200s Setting up libpkgconf3:s390x (1.8.1-4) ...
200s Setting up libmpc3:s390x (1.3.1-1build2) ...
200s Setting up icu-devtools (76.1-1ubuntu2) ...
200s Setting up pkgconf-bin (1.8.1-4) ...
200s Setting up liblzma-dev:s390x (5.6.4-1) ...
200s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
200s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
200s Setting up libpcre2-posix3:s390x (10.45-1) ...
200s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
200s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
200s Setting up libisl23:s390x (0.27-1) ...
200s Setting up libdeflate-dev:s390x (1.23-1) ...
200s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
200s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
200s Setting up libblas-dev:s390x (3.12.1-2) ...
200s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
200s Setting up dctrl-tools (2.24-3build3) ...
200s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
200s Setting up libbz2-dev:s390x (1.0.8-6) ...
200s Setting up libpcre2-dev:s390x (10.45-1) ...
200s Setting up libpng-dev:s390x (1.6.47-1) ...
200s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
200s Setting up pkgconf:s390x (1.8.1-4) ...
200s Setting up liblapack-dev:s390x (3.12.1-2) ...
200s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
200s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up cpp-14 (14.2.0-17ubuntu3) ...
200s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
200s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
200s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
200s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up cpp (4:14.2.0-1ubuntu1) ...
200s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
200s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up gcc-14 (14.2.0-17ubuntu3) ...
200s Setting up g++-14 (14.2.0-17ubuntu3) ...
200s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
200s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
200s Setting up gcc (4:14.2.0-1ubuntu1) ...
200s Setting up g++ (4:14.2.0-1ubuntu1) ...
200s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
200s Setting up build-essential (12.10ubuntu1) ...
200s Setting up gfortran (4:14.2.0-1ubuntu1) ...
200s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
200s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
200s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
200s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
200s Setting up r-base-dev (4.4.3-1) ...
200s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
200s Processing triggers for libc-bin (2.41-1ubuntu2) ...
200s Processing triggers for man-db (2.13.0-1) ...
200s Processing triggers for install-info (7.1.1-1) ...
201s autopkgtest [18:24:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
201s autopkgtest [18:24:30]: test pkg-r-autopkgtest: [-----------------------
202s Test: Try to load the R library qtl
202s 
202s R version 4.4.3 (2025-02-28) -- "Trophy Case"
202s Copyright (C) 2025 The R Foundation for Statistical Computing
202s Platform: s390x-ibm-linux-gnu
202s 
202s R is free software and comes with ABSOLUTELY NO WARRANTY.
202s You are welcome to redistribute it under certain conditions.
202s Type 'license()' or 'licence()' for distribution details.
202s 
202s R is a collaborative project with many contributors.
202s Type 'contributors()' for more information and
202s 'citation()' on how to cite R or R packages in publications.
202s 
202s Type 'demo()' for some demos, 'help()' for on-line help, or
202s 'help.start()' for an HTML browser interface to help.
202s Type 'q()' to quit R.
202s 
202s > library('qtl')
202s > 
202s > 
202s Other tests are currently unsupported!
202s They will be progressively added.
202s autopkgtest [18:24:31]: test pkg-r-autopkgtest: -----------------------]
203s autopkgtest [18:24:32]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
203s pkg-r-autopkgtest    PASS
203s autopkgtest [18:24:32]: @@@@@@@@@@@@@@@@@@@@ summary
203s run-unit-test        PASS
203s pkg-r-autopkgtest    PASS
208s nova [W] Using flock in prodstack6-s390x
208s Creating nova instance adt-plucky-s390x-r-cran-qtl-20250315-182109-juju-7f2275-prod-proposed-migration-environment-2-676e8563-b104-4757-ad58-f8f9af5d3095 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
208s nova [W] Timed out waiting for 7603bb1a-598c-4869-b680-81df6bb39841 to get deleted.