0s autopkgtest [18:19:49]: starting date and time: 2025-03-15 18:19:49+0000 0s autopkgtest [18:19:49]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:19:49]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.66p9dk_w/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-psychotools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-16.secgroup --name adt-plucky-s390x-r-cran-psychotools-20250315-181949-juju-7f2275-prod-proposed-migration-environment-15-97535b84-e77c-4951-ba16-d7a4d17d5dcb --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 86s autopkgtest [18:21:15]: testbed dpkg architecture: s390x 86s autopkgtest [18:21:15]: testbed apt version: 2.9.33 87s autopkgtest [18:21:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s autopkgtest [18:21:16]: testbed release detected to be: None 88s autopkgtest [18:21:17]: updating testbed package index (apt update) 88s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 88s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 88s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 88s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 88s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 89s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 89s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 89s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 89s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 89s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 89s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 89s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 89s Fetched 1073 kB in 1s (1006 kB/s) 90s Reading package lists... 90s + lsb_release --codename --short 90s + RELEASE=plucky 90s + cat 90s + [ plucky != trusty ] 90s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Calculating upgrade... 90s Calculating upgrade... 91s The following packages were automatically installed and are no longer required: 91s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 91s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 91s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 91s linux-tools-6.11.0-8-generic 91s Use 'sudo apt autoremove' to remove them. 91s The following packages will be upgraded: 91s pinentry-curses python3-jinja2 strace 91s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Need to get 652 kB of archives. 91s After this operation, 27.6 kB of additional disk space will be used. 91s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 91s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 91s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 92s Fetched 652 kB in 1s (709 kB/s) 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 92s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 92s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 92s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 92s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 92s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 92s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 92s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 92s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 92s Setting up strace (6.13+ds-1ubuntu1) ... 92s Processing triggers for man-db (2.13.0-1) ... 93s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 93s + /usr/lib/apt/apt-helper analyze-pattern ?true 93s + uname -r 93s + sed s/\./\\./g 93s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 93s + apt list ?obsolete 93s + tail -n+2 93s + cut -d/ -f1 93s + grep -v ^linux-.*6\.14\.0-10-generic.* 93s + obsolete_pkgs=linux-headers-6.11.0-8-generic 93s linux-headers-6.11.0-8 93s linux-modules-6.11.0-8-generic 93s linux-tools-6.11.0-8-generic 93s linux-tools-6.11.0-8 93s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Solving dependencies... 93s The following packages will be REMOVED: 93s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 93s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 93s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 93s linux-tools-6.11.0-8-generic* 93s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 93s After this operation, 167 MB disk space will be freed. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 93s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 93s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 93s Removing libpython3.12t64:s390x (3.12.9-1) ... 93s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 93s Removing libnsl2:s390x (1.3.0-3build3) ... 93s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 93s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 93s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 94s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 94s Processing triggers for libc-bin (2.41-1ubuntu1) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 94s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 94s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 94s + grep -q trusty /etc/lsb-release 94s + [ ! -d /usr/share/doc/unattended-upgrades ] 94s + [ ! -d /usr/share/doc/lxd ] 94s + [ ! -d /usr/share/doc/lxd-client ] 94s + [ ! -d /usr/share/doc/snapd ] 94s + type iptables 94s + cat 94s + chmod 755 /etc/rc.local 94s + . /etc/rc.local 94s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 94s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 94s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 94s + uname -m 94s + [ s390x = ppc64le ] 94s + [ -d /run/systemd/system ] 94s + systemd-detect-virt --quiet --vm 94s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 94s + cat 94s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 94s + echo COMPRESS=lz4 94s autopkgtest [18:21:23]: upgrading testbed (apt dist-upgrade and autopurge) 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 95s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 95s Starting 2 pkgProblemResolver with broken count: 0 95s Done 95s Entering ResolveByKeep 95s 95s Calculating upgrade... 95s The following packages will be upgraded: 95s libc-bin libc-dev-bin libc6 libc6-dev locales 96s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Need to get 9512 kB of archives. 96s After this operation, 8192 B of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 96s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 97s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 98s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 99s Preconfiguring packages ... 99s Fetched 9512 kB in 4s (2479 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 100s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 100s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 100s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 100s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 100s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 100s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 100s Setting up libc6:s390x (2.41-1ubuntu2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 100s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 100s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 100s Setting up libc-bin (2.41-1ubuntu2) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 100s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 100s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 100s Setting up locales (2.41-1ubuntu2) ... 100s Generating locales (this might take a while)... 101s en_US.UTF-8... done 101s Generation complete. 101s Setting up libc-dev-bin (2.41-1ubuntu2) ... 101s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 101s Processing triggers for man-db (2.13.0-1) ... 102s Processing triggers for systemd (257.3-1ubuntu3) ... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 103s Solving dependencies... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [18:21:32]: rebooting testbed after setup commands that affected boot 122s autopkgtest [18:21:51]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 124s autopkgtest [18:21:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-psychotools 126s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-psychotools 0.7-4-1 (dsc) [2183 B] 126s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-psychotools 0.7-4-1 (tar) [439 kB] 126s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-psychotools 0.7-4-1 (diff) [3252 B] 126s gpgv: Signature made Wed Jan 22 23:40:08 2025 UTC 126s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 126s gpgv: issuer "plessy@debian.org" 126s gpgv: Can't check signature: No public key 126s dpkg-source: warning: cannot verify inline signature for ./r-cran-psychotools_0.7-4-1.dsc: no acceptable signature found 126s autopkgtest [18:21:55]: testing package r-cran-psychotools version 0.7-4-1 126s autopkgtest [18:21:55]: build not needed 128s autopkgtest [18:21:57]: test run-unit-test: preparing testbed 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Starting pkgProblemResolver with broken count: 0 129s Starting 2 pkgProblemResolver with broken count: 0 129s Done 129s The following NEW packages will be installed: 129s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 129s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 129s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 129s libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 129s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 129s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 129s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-codetools 129s r-cran-formula r-cran-lattice r-cran-mass r-cran-matrix r-cran-multcomp 129s r-cran-mvtnorm r-cran-psychotools r-cran-sandwich r-cran-survival 129s r-cran-th.data r-cran-zoo unzip x11-common xdg-utils zip 129s 0 upgraded, 56 newly installed, 0 to remove and 0 not upgraded. 129s Need to get 69.4 MB of archives. 129s After this operation, 119 MB of additional disk space will be used. 129s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 130s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 130s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 131s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 131s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 131s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 131s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 131s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 131s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 131s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 131s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 131s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 131s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 131s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 132s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 132s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 132s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 132s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 132s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 132s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 132s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 133s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 133s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 133s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 133s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 133s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 133s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 133s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 133s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 133s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 134s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 134s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 134s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 134s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 134s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 134s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 134s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 134s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 135s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 135s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 135s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 135s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 146s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 146s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formula all 1.2-5-1 [158 kB] 146s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 146s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB] 147s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 149s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mvtnorm s390x 1.3-3-1 [924 kB] 149s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB] 152s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-th.data all 1.1-3-1 [8723 kB] 157s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-zoo s390x 1.8-13-1 [998 kB] 157s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sandwich all 3.1-1-1 [1483 kB] 158s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-multcomp all 1.4-28-1 [700 kB] 158s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-psychotools s390x 0.7-4-1 [1094 kB] 159s Preconfiguring packages ... 159s Fetched 69.4 MB in 30s (2317 kB/s) 159s Selecting previously unselected package libfreetype6:s390x. 159s (Reading database ... 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r-cran-th.data (1.1-3-1) ... 163s Setting up r-cran-multcomp (1.4-28-1) ... 163s Processing triggers for libc-bin (2.41-1ubuntu2) ... 163s Processing triggers for man-db (2.13.0-1) ... 164s Processing triggers for install-info (7.1.1-1) ... 165s autopkgtest [18:22:34]: test run-unit-test: [----------------------- 165s BEGIN TEST elementary_symmetric_functions.R 165s 165s R version 4.4.3 (2025-02-28) -- "Trophy Case" 165s Copyright (C) 2025 The R Foundation for Statistical Computing 165s Platform: s390x-ibm-linux-gnu 165s 165s R is free software and comes with ABSOLUTELY NO WARRANTY. 165s You are welcome to redistribute it under certain conditions. 165s Type 'license()' or 'licence()' for distribution details. 165s 165s R is a collaborative project with many contributors. 165s Type 'contributors()' for more information and 165s 'citation()' on how to cite R or R packages in publications. 165s 165s Type 'demo()' for some demos, 'help()' for on-line help, or 165s 'help.start()' for an HTML browser interface to help. 165s Type 'q()' to quit R. 165s 165s > ##### several checks for function elementary_symmetric_functions() 165s > ##### 2012/09/07, BAEK 165s > 165s > 165s > ##### preliminaries 165s > library("psychotools") 165s > set.seed(1) 165s > 165s > 165s > ################################################## 165s > ##### dichotomous items (zero and first order derivatives) 165s > ################################################## 165s > di10 <- runif(10, -2.5, 2.5) 165s > di20 <- runif(20, -2.5, 2.5) 165s > elementary_symmetric_functions(di10) 165s $`0` 165s [1] 1.000000e+00 2.055532e+01 1.538662e+02 5.492526e+02 1.018398e+03 165s [6] 1.017086e+03 5.636905e+02 1.734870e+02 2.864725e+01 2.360797e+00 165s [11] 7.610103e-02 165s 165s > elementary_symmetric_functions(di20) 165s $`0` 165s [1] 1.000000e+00 4.717688e+01 9.808555e+02 1.197632e+04 9.635106e+04 165s [6] 5.424130e+05 2.212806e+06 6.680286e+06 1.510344e+07 2.571547e+07 165s [11] 3.299332e+07 3.179465e+07 2.286777e+07 1.216735e+07 4.734880e+06 165s [16] 1.326946e+06 2.618302e+05 3.511236e+04 3.015438e+03 1.481147e+02 165s [21] 3.135644e+00 165s 165s > 165s > ## with 10 items, everything is fine 165s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = FALSE)) # R-bin sum vs. C sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = TRUE)) # R-bin sum vs. C diff 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = FALSE)) # R-bin diff vs. C sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di10, order = 1, engine = "C", diff = TRUE)) # R-bin diff vs. C diff 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE)) # R-poly sum vs. R-bin sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE)) # R-poly sum vs. R-bin diff 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = FALSE)) # R-poly diff vs. R-bin sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(as.list(di10), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 1, engine = "R", diff = TRUE)) # R-poly diff vs. R-bin diff 165s [1] TRUE 165s > 165s > ## with 20 items we get (rounding) errors for difference algorithm :) 165s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = FALSE)) # R-bin sum vs. C sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = TRUE)) # R-bin sum vs. C diff 165s Warning message: 165s In log(gamma1) : NaNs produced 165s [1] "Component “1”: Mean relative difference: 0.0005072323" 165s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = FALSE)) # R-bin diff vs. C sum 165s [1] "Component “1”: 'is.NA' value mismatch: 0 in current 1 in target" 165s > all.equal(elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(di20, order = 1, engine = "C", diff = TRUE)) # R-bin diff vs. C diff 165s Warning message: 165s In log(gamma1) : NaNs produced 165s Warning message: 165s In log(gamma1) : NaNs produced 165s Warning message: 165s In log(gamma1) : NaNs produced 165s [1] "Component “1”: 'is.NA' value mismatch: 0 in current 1 in target" 165s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE)) # R-poly sum vs. R-bin sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE)) # R-poly sum vs. R-bin diff 165s [1] "Component “1”: 'is.NA' value mismatch: 1 in current 0 in target" 165s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = FALSE)) # R-poly diff vs. R-bin sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(as.list(di20), order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(di20, order = 1, engine = "R", diff = TRUE)) # R-poly diff vs. R-bin diff 165s [1] "Component “1”: 'is.NA' value mismatch: 1 in current 0 in target" 165s > 165s > ## second order derivatives (only implemented for R-bin sum/diff) 165s > all.equal(elementary_symmetric_functions(di10, order = 2, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 2, engine = "R", diff = TRUE)) # R-bin sum vs. R-bin diff 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(di20, order = 2, engine = "R", diff = FALSE), elementary_symmetric_functions(di10, order = 2, engine = "R", diff = TRUE)) # R-bin sum vs. R-bin diff 165s [1] "Component “0”: Numeric: lengths (21, 11) differ" 165s [2] "Component “1”: Attributes: < Component “dim”: Mean relative difference: 0.4878049 >" 165s [3] "Component “1”: Numeric: lengths (420, 110) differ" 165s [4] "Component “2”: Attributes: < Component “dim”: Mean relative difference: 0.4918033 >" 165s [5] "Component “2”: Numeric: lengths (8400, 1100) differ" 165s > 165s > 165s > ################################################## 165s > ##### polytomous items (zero and first order derivatives) 165s > ################################################## 165s > pi10 <- unname(split(runif(10, -2.5, 2.5), factor(rep(1:5, each = 2)))) 165s > pi20 <- unname(split(runif(20, -2.5, 2.5), factor(rep(1:10, each = 2)))) 165s > elementary_symmetric_functions(pi10) 165s $`0` 165s [1] 1.000000 2.877547 17.409618 35.128538 93.142712 122.857021 165s [7] 166.381830 135.480720 95.407269 37.673980 13.910708 165s 165s > elementary_symmetric_functions(pi20) 165s $`0` 165s [1] 1.000000e+00 2.644761e+01 2.657538e+02 1.418158e+03 5.094068e+03 165s [6] 1.364425e+04 2.853812e+04 4.831630e+04 6.757728e+04 7.900700e+04 165s [11] 7.790678e+04 6.498572e+04 4.579809e+04 2.714372e+04 1.337284e+04 165s [16] 5.374640e+03 1.709608e+03 4.077618e+02 6.617534e+01 6.150293e+00 165s [21] 2.341581e-01 165s 165s > 165s > ## with 10 items, everything is fine. 165s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = FALSE)) # R-poly sum vs. C sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = TRUE)) # R-poly sum vs. C diff 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = FALSE)) # R-poly diff vs. C sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(pi10, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi10, order = 1, engine = "C", diff = TRUE)) # R-poly diff vs. C diff 165s [1] TRUE 165s > 165s > ## with 20 items we get (rounding) errors for difference algorithm :) 165s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = FALSE)) # R-poly sum vs. C sum 165s [1] TRUE 165s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = FALSE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = TRUE)) # R-poly sum vs. C diff 165s [1] "Component “1”: Mean relative difference: 0.002305129" 165s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = FALSE)) # R-poly diff vs. C sum 165s [1] "Component “1”: Mean relative difference: 0.002175898" 165s > all.equal(elementary_symmetric_functions(pi20, order = 1, engine = "R", diff = TRUE), elementary_symmetric_functions(pi20, order = 1, engine = "C", diff = TRUE)) # R-poly diff vs. C diff 165s [1] "Component “1”: Mean relative difference: 0.004775475" 165s > 165s > 165s > ################################################## 165s > ##### check 'check' 165s > ################################################## 165s > all.equal(elementary_symmetric_functions(di10, order = 1), elementary_symmetric_functions(as.list(di10), order = 1)) # dichotomous items as list / vector 165s [1] TRUE 165s > inherits(try(elementary_symmetric_functions(di10, log = FALSE, engine = "C")), "try-error") # input on log scale for dichotmous items not possible (engine C) 165s [1] TRUE 165s > inherits(try(elementary_symmetric_functions(pi10, log = FALSE, engine = "R")), "try-error") # input on log scale for polytomous items not possible (engine R) 165s [1] TRUE 165s > inherits(try(elementary_symmetric_functions(pi10, log = FALSE, engine = "C")), "try-error") # input on log scale for polytomous items not possible (engine C) 165s [1] TRUE 165s > inherits(try(elementary_symmetric_functions(di10, order = 2, engine = "C")), "try-error") # second order derivatives for dichotmous items not possible (engine C) 165s [1] FALSE 165s > inherits(try(elementary_symmetric_functions(pi10, order = 2, engine = "R")), "try-error") # second order derivatives for polytomous items not possible (engine R) 165s [1] TRUE 165s > inherits(try(elementary_symmetric_functions(pi10, order = 2, engine = "C")), "try-error") # second order derivatives for polytomous items not possible (engine C) 165s [1] TRUE 165s > 165s Error in elementary_symmetric_functions(di10, log = FALSE, engine = "C") : 165s log is not TRUE 165s Error in elementary_symmetric_functions(pi10, log = FALSE, engine = "R") : 165s log is not TRUE 165s Error in elementary_symmetric_functions(pi10, log = FALSE, engine = "C") : 165s log is not TRUE 165s Warning message: 165s In elementary_symmetric_functions(di10, order = 2, engine = "C") : 165s Second order ESFs are not available in C, changed to R. 165s Error in elementary_symmetric_functions(pi10, order = 2, engine = "R") : 165s Second order ESFs are not available for polytomous items. 165s Error in elementary_symmetric_functions(pi10, order = 2, engine = "C") : 165s Second order ESFs are not available for polytomous items. 166s autopkgtest [18:22:35]: test run-unit-test: -----------------------] 166s autopkgtest [18:22:35]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 166s run-unit-test PASS 167s autopkgtest [18:22:36]: test pkg-r-autopkgtest: preparing testbed 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 167s The following NEW packages will be installed: 167s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 167s dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 167s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 167s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 167s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 167s libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev 167s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3 167s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 167s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 167s libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 167s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. 167s Need to get 82.3 MB of archives. 167s After this operation, 279 MB of additional disk space will be used. 167s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 168s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 168s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 172s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 172s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 172s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 172s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 172s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 172s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 173s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 173s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 174s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 176s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 176s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 176s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 176s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 177s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 178s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 178s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 178s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 178s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 178s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 178s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 178s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 179s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 179s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 179s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 179s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 179s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 179s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 179s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 179s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 181s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 181s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 181s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 181s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 182s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 182s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 182s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 182s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 182s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 182s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 182s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 183s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 183s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 183s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 183s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 183s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 183s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 183s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 183s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 183s Fetched 82.3 MB in 16s (5310 kB/s) 183s Selecting previously unselected package libisl23:s390x. 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 59315 files and directories currently installed.) 183s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ... 183s Unpacking libisl23:s390x (0.27-1) ... 183s Selecting previously unselected package libmpc3:s390x. 183s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ... 183s Unpacking libmpc3:s390x (1.3.1-1build2) ... 183s Selecting previously unselected package cpp-14-s390x-linux-gnu. 183s Preparing to unpack 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gcc-14 (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gcc-s390x-linux-gnu. 184s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 184s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package gcc. 184s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 184s Unpacking gcc (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package libstdc++-14-dev:s390x. 184s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 184s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package g++-14-s390x-linux-gnu. 184s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 184s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package g++-14. 184s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ... 184s Unpacking g++-14 (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package g++-s390x-linux-gnu. 184s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 184s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package g++. 184s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 184s Unpacking g++ (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package build-essential. 184s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ... 184s Unpacking build-essential (12.10ubuntu1) ... 184s Selecting previously unselected package dctrl-tools. 184s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ... 184s Unpacking dctrl-tools (2.24-3build3) ... 184s Selecting previously unselected package libgfortran-14-dev:s390x. 184s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 184s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 184s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 184s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gfortran-14. 184s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 184s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 184s Selecting previously unselected package gfortran-s390x-linux-gnu. 184s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 184s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package gfortran. 184s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 184s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 184s Selecting previously unselected package icu-devtools. 184s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ... 184s Unpacking icu-devtools (76.1-1ubuntu2) ... 184s Selecting previously unselected package libblas-dev:s390x. 184s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ... 184s Unpacking libblas-dev:s390x (3.12.1-2) ... 184s Selecting previously unselected package libbz2-dev:s390x. 184s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ... 184s Unpacking libbz2-dev:s390x (1.0.8-6) ... 184s Selecting previously unselected package libdeflate-dev:s390x. 184s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ... 184s Unpacking libdeflate-dev:s390x (1.23-1) ... 184s Selecting previously unselected package libicu-dev:s390x. 184s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ... 184s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 184s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 184s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 184s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 184s Selecting previously unselected package libjpeg8-dev:s390x. 184s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 184s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 184s Selecting previously unselected package libjpeg-dev:s390x. 184s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 184s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 184s Selecting previously unselected package liblapack-dev:s390x. 184s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ... 184s Unpacking liblapack-dev:s390x (3.12.1-2) ... 185s Selecting previously unselected package libncurses-dev:s390x. 185s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ... 185s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 185s Selecting previously unselected package libpcre2-16-0:s390x. 185s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ... 185s Unpacking libpcre2-16-0:s390x (10.45-1) ... 185s Selecting previously unselected package libpcre2-32-0:s390x. 185s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ... 185s 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185s Unpacking r-base-dev (4.4.3-1) ... 185s Selecting previously unselected package pkg-r-autopkgtest. 185s Preparing to unpack .../50-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 185s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 185s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 185s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 185s Setting up libreadline-dev:s390x (8.2-6) ... 185s Setting up libpcre2-16-0:s390x (10.45-1) ... 185s Setting up libpcre2-32-0:s390x (10.45-1) ... 185s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 185s Setting up libpkgconf3:s390x (1.8.1-4) ... 185s Setting up libmpc3:s390x (1.3.1-1build2) ... 185s Setting up icu-devtools (76.1-1ubuntu2) ... 185s Setting up pkgconf-bin (1.8.1-4) ... 185s Setting up liblzma-dev:s390x (5.6.4-1) ... 185s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 185s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 185s Setting up libpcre2-posix3:s390x (10.45-1) ... 185s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 185s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 185s Setting up libisl23:s390x (0.27-1) ... 185s Setting up libdeflate-dev:s390x (1.23-1) ... 185s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 185s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 185s Setting up libblas-dev:s390x (3.12.1-2) ... 185s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 185s Setting up dctrl-tools (2.24-3build3) ... 185s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 185s Setting up libbz2-dev:s390x (1.0.8-6) ... 185s Setting up libpcre2-dev:s390x (10.45-1) ... 185s Setting up libpng-dev:s390x (1.6.47-1) ... 185s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 185s Setting up pkgconf:s390x (1.8.1-4) ... 185s Setting up liblapack-dev:s390x (3.12.1-2) ... 185s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 185s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 185s Setting up cpp-14 (14.2.0-17ubuntu3) ... 185s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 185s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 185s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 185s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 185s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 185s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 185s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 185s Setting up cpp (4:14.2.0-1ubuntu1) ... 185s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 185s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 185s Setting up gcc-14 (14.2.0-17ubuntu3) ... 185s Setting up g++-14 (14.2.0-17ubuntu3) ... 185s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 185s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 185s Setting up gcc (4:14.2.0-1ubuntu1) ... 185s Setting up g++ (4:14.2.0-1ubuntu1) ... 185s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 185s Setting up build-essential (12.10ubuntu1) ... 185s Setting up gfortran (4:14.2.0-1ubuntu1) ... 185s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 185s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 185s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 185s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 185s Setting up r-base-dev (4.4.3-1) ... 185s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 185s Processing triggers for libc-bin (2.41-1ubuntu2) ... 185s Processing triggers for man-db (2.13.0-1) ... 186s Processing triggers for install-info (7.1.1-1) ... 187s autopkgtest [18:22:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 187s autopkgtest [18:22:56]: test pkg-r-autopkgtest: [----------------------- 187s Test: Try to load the R library psychotools 187s 187s R version 4.4.3 (2025-02-28) -- "Trophy Case" 187s Copyright (C) 2025 The R Foundation for Statistical Computing 187s Platform: s390x-ibm-linux-gnu 187s 187s R is free software and comes with ABSOLUTELY NO WARRANTY. 187s You are welcome to redistribute it under certain conditions. 187s Type 'license()' or 'licence()' for distribution details. 187s 187s R is a collaborative project with many contributors. 187s Type 'contributors()' for more information and 187s 'citation()' on how to cite R or R packages in publications. 187s 187s Type 'demo()' for some demos, 'help()' for on-line help, or 187s 'help.start()' for an HTML browser interface to help. 187s Type 'q()' to quit R. 187s 187s > library('psychotools') 187s > 187s > 187s Other tests are currently unsupported! 187s They will be progressively added. 187s autopkgtest [18:22:56]: test pkg-r-autopkgtest: -----------------------] 188s autopkgtest [18:22:57]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 188s pkg-r-autopkgtest PASS 188s autopkgtest [18:22:57]: @@@@@@@@@@@@@@@@@@@@ summary 188s run-unit-test PASS 188s pkg-r-autopkgtest PASS 193s nova [W] Using flock in prodstack6-s390x 193s Creating nova instance adt-plucky-s390x-r-cran-psychotools-20250315-181949-juju-7f2275-prod-proposed-migration-environment-15-97535b84-e77c-4951-ba16-d7a4d17d5dcb from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 193s nova [W] Timed out waiting for 4a5118f7-fe1a-4548-957f-a670e58df921 to get deleted.