0s autopkgtest [18:15:56]: starting date and time: 2025-03-15 18:15:56+0000
0s autopkgtest [18:15:56]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
0s autopkgtest [18:15:56]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fzteqwes/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-pcapp --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-22.secgroup --name adt-plucky-s390x-r-cran-pcapp-20250315-181556-juju-7f2275-prod-proposed-migration-environment-15-ef0c5aef-e170-4aa9-9c1f-c32fe0e1e35e --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
138s autopkgtest [18:18:14]: testbed dpkg architecture: s390x
139s autopkgtest [18:18:15]: testbed apt version: 2.9.33
139s autopkgtest [18:18:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup
139s autopkgtest [18:18:15]: testbed release detected to be: None
140s autopkgtest [18:18:16]: updating testbed package index (apt update)
140s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
140s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
141s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
141s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
141s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
141s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
141s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
141s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
141s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
141s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
141s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
141s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
141s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
141s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
142s Fetched 1073 kB in 2s (701 kB/s)
142s Reading package lists...
143s + lsb_release --codename --short
143s + RELEASE=plucky
143s + cat
143s + [ plucky != trusty ]
143s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
143s Reading package lists...
143s Building dependency tree...
143s Reading state information...
143s Calculating upgrade...
143s Calculating upgrade...
143s The following packages were automatically installed and are no longer required:
143s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
143s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
143s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
143s linux-tools-6.11.0-8-generic
143s Use 'sudo apt autoremove' to remove them.
143s The following packages will be upgraded:
143s pinentry-curses python3-jinja2 strace
143s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
143s Need to get 652 kB of archives.
143s After this operation, 27.6 kB of additional disk space will be used.
143s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
144s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
144s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
145s Fetched 652 kB in 1s (633 kB/s)
145s (Reading database ...
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
145s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
145s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
145s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
145s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
145s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
145s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
145s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
145s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
145s Setting up strace (6.13+ds-1ubuntu1) ...
145s Processing triggers for man-db (2.13.0-1) ...
145s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
145s + /usr/lib/apt/apt-helper analyze-pattern ?true
145s + uname -r
145s + sed s/\./\\./g
145s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
145s + apt list ?obsolete
146s + tail -n+2
146s + + grep -v ^linux-.*6\.14\.0-10-generic.*
146s cut -d/ -f1
146s + obsolete_pkgs=linux-headers-6.11.0-8-generic
146s linux-headers-6.11.0-8
146s linux-modules-6.11.0-8-generic
146s linux-tools-6.11.0-8-generic
146s linux-tools-6.11.0-8
146s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
146s Reading package lists...
146s Building dependency tree...
146s Reading state information...
146s Solving dependencies...
146s The following packages will be REMOVED:
146s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
146s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
146s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
146s linux-tools-6.11.0-8-generic*
146s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
146s After this operation, 167 MB disk space will be freed.
146s (Reading database ...
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
146s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
146s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
146s Removing libpython3.12t64:s390x (3.12.9-1) ...
146s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
146s Removing libnsl2:s390x (1.3.0-3build3) ...
146s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
146s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
146s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
147s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
147s Processing triggers for libc-bin (2.41-1ubuntu1) ...
148s (Reading database ...
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
148s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
148s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
148s + grep -q trusty /etc/lsb-release
148s + [ ! -d /usr/share/doc/unattended-upgrades ]
148s + [ ! -d /usr/share/doc/lxd ]
148s + [ ! -d /usr/share/doc/lxd-client ]
148s + [ ! -d /usr/share/doc/snapd ]
148s + type iptables
148s + cat
148s + chmod 755 /etc/rc.local
148s + . /etc/rc.local
148s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
148s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
148s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
148s + uname -m
148s + [ s390x = ppc64le ]
148s + [ -d /run/systemd/system ]
148s + systemd-detect-virt --quiet --vm
148s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
148s + cat
148s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
148s + echo COMPRESS=lz4
148s autopkgtest [18:18:24]: upgrading testbed (apt dist-upgrade and autopurge)
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
148s Starting 2 pkgProblemResolver with broken count: 0
148s Done
149s Entering ResolveByKeep
149s
149s Calculating upgrade...
149s The following packages will be upgraded:
149s libc-bin libc-dev-bin libc6 libc6-dev locales
149s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
149s Need to get 9512 kB of archives.
149s After this operation, 8192 B of additional disk space will be used.
149s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
151s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
151s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
153s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
154s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
158s Preconfiguring packages ...
158s Fetched 9512 kB in 9s (1118 kB/s)
158s (Reading database ...
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
158s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
158s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
158s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
158s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
158s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
158s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
158s Setting up libc6:s390x (2.41-1ubuntu2) ...
158s (Reading database ...
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(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
158s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
158s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
158s Setting up libc-bin (2.41-1ubuntu2) ...
158s (Reading database ...
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(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
158s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
158s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
158s Setting up locales (2.41-1ubuntu2) ...
159s Generating locales (this might take a while)...
160s en_US.UTF-8... done
160s Generation complete.
160s Setting up libc-dev-bin (2.41-1ubuntu2) ...
160s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
160s Processing triggers for man-db (2.13.0-1) ...
160s Processing triggers for systemd (257.3-1ubuntu3) ...
161s Reading package lists...
161s Building dependency tree...
161s Reading state information...
161s Starting pkgProblemResolver with broken count: 0
161s Starting 2 pkgProblemResolver with broken count: 0
162s Done
162s Solving dependencies...
162s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
162s autopkgtest [18:18:38]: rebooting testbed after setup commands that affected boot
182s autopkgtest [18:18:58]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
185s autopkgtest [18:19:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-pcapp
186s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pcapp 2.0-5-1 (dsc) [2100 B]
186s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pcapp 2.0-5-1 (tar) [201 kB]
186s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-pcapp 2.0-5-1 (diff) [3616 B]
186s gpgv: Signature made Mon Sep 2 03:06:11 2024 UTC
186s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
186s gpgv: issuer "plessy@debian.org"
186s gpgv: Can't check signature: No public key
186s dpkg-source: warning: cannot verify inline signature for ./r-cran-pcapp_2.0-5-1.dsc: no acceptable signature found
186s autopkgtest [18:19:02]: testing package r-cran-pcapp version 2.0-5-1
187s autopkgtest [18:19:03]: build not needed
189s autopkgtest [18:19:05]: test run-unit-test: preparing testbed
190s Reading package lists...
190s Building dependency tree...
190s Reading state information...
190s Starting pkgProblemResolver with broken count: 0
190s Starting 2 pkgProblemResolver with broken count: 0
190s Done
190s The following NEW packages will be installed:
190s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
190s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
190s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8
190s libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
190s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6
190s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0
190s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-deoptimr
190s r-cran-mvtnorm r-cran-pcapp r-cran-robustbase unzip x11-common xdg-utils zip
190s 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded.
190s Need to get 44.5 MB of archives.
190s After this operation, 86.8 MB of additional disk space will be used.
190s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
191s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
191s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
192s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
192s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
192s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
192s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
192s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
193s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
193s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
193s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
193s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
193s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
193s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
193s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
194s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
194s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
194s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
194s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
194s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
194s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
194s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
194s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
197s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
197s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
197s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
197s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
197s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
197s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
197s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
197s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
197s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
197s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
198s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
198s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
198s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
198s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
198s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
198s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
199s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
199s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
199s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
199s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
199s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
216s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-deoptimr all 1.1-3-1-1 [76.6 kB]
216s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mvtnorm s390x 1.3-3-1 [924 kB]
216s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pcapp s390x 2.0-5-1 [378 kB]
216s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-robustbase s390x 0.99-4-1-1 [3059 kB]
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220s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
220s Setting up fonts-dejavu-mono (2.37-8) ...
220s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
220s Setting up fonts-dejavu-core (2.37-8) ...
220s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
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220s Setting up liblapack3:s390x (3.12.1-2) ...
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220s Setting up libsm6:s390x (2:1.2.4-1) ...
220s Setting up fontconfig (2.15.0-2ubuntu1) ...
222s Regenerating fonts cache... done.
222s Setting up libxft2:s390x (2.3.6-1build1) ...
222s Setting up libtk8.6:s390x (8.6.16-1) ...
222s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
222s Setting up libcairo2:s390x (1.18.2-2) ...
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222s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
222s Setting up r-base-core (4.4.3-1) ...
222s Creating config file /etc/R/Renviron with new version
222s Setting up r-cran-deoptimr (1.1-3-1-1) ...
222s Setting up r-cran-mvtnorm (1.3-3-1) ...
222s Setting up r-cran-robustbase (0.99-4-1-1) ...
222s Setting up r-cran-pcapp (2.0-5-1) ...
222s Processing triggers for libc-bin (2.41-1ubuntu2) ...
222s Processing triggers for man-db (2.13.0-1) ...
223s Processing triggers for install-info (7.1.1-1) ...
224s autopkgtest [18:19:40]: test run-unit-test: [-----------------------
224s BEGIN TEST tpcapp.R
224s
224s R version 4.4.3 (2025-02-28) -- "Trophy Case"
224s Copyright (C) 2025 The R Foundation for Statistical Computing
224s Platform: s390x-ibm-linux-gnu
224s
224s R is free software and comes with ABSOLUTELY NO WARRANTY.
224s You are welcome to redistribute it under certain conditions.
224s Type 'license()' or 'licence()' for distribution details.
224s
224s R is a collaborative project with many contributors.
224s Type 'contributors()' for more information and
224s 'citation()' on how to cite R or R packages in publications.
224s
224s Type 'demo()' for some demos, 'help()' for on-line help, or
224s 'help.start()' for an HTML browser interface to help.
224s Type 'q()' to quit R.
224s
225s > ## this will render the output independent from the version of the package
225s > suppressPackageStartupMessages(library(pcaPP))
225s >
225s > ## Sparse loadings
225s > set.seed (0)
225s > ##x <- data.Zou()
225s > data(iris)
225s > x <- iris[, 1:4]
225s >
225s > l1median_NM (x)$par
225s [1] 5.931944 2.913282 4.215406 1.364975
225s > l1median_CG (x)$par
225s [1] 5.932216 2.912279 4.215837 1.364750
225s > l1median_BFGS (x)$par
225s [1] 5.932216 2.912279 4.215837 1.364750
225s > l1median_NLM (x)$par
225s [1] 5.932216 2.912279 4.215837 1.364750
225s > l1median_HoCr (x)$par
225s [1] 5.932216 2.912279 4.215837 1.364750
225s > l1median_VaZh (x)$par
225s [1] 5.932216 2.912279 4.215837 1.364750
225s >
225s > # compare with coordinate-wise median:
225s > apply(x,2,median)
225s Sepal.Length Sepal.Width Petal.Length Petal.Width
225s 5.80 3.00 4.35 1.30
225s >
225s > pc <- PCAgrid(x)
225s > pc
225s Call:
225s PCAgrid(x = x)
225s
225s Standard deviations:
225s [1] 2.3555356 0.9095565
225s
225s 4 variables and 150 observations.
225s > summary(pc)
225s Importance of components:
225s [,1] [,2]
225s Standard deviation 2.3555356 0.9095565
225s Proportion of Variance 0.8702457 0.1297543
225s Cumulative Proportion 0.8702457 1.0000000
225s > pc$loadings
225s
225s Loadings:
225s Comp.1 Comp.2
225s Sepal.Length 0.589 -0.618
225s Sepal.Width 0.174
225s Petal.Length 0.598 0.749
225s Petal.Width 0.543 -0.163
225s
225s Comp.1 Comp.2
225s SS loadings 1.00 1.00
225s Proportion Var 0.25 0.25
225s Cumulative Var 0.25 0.50
225s > pc$scores
225s Comp.1 Comp.2
225s [1,] -2.791519460 -1.304428269
225s [2,] -2.921720995 -1.267984502
225s [3,] -3.094390048 -1.184566289
225s [4,] -3.036232432 -0.990326562
225s [5,] -2.847966568 -1.225246155
225s [6,] -2.316930680 -1.227763426
225s [7,] -3.034282033 -1.029294612
225s [8,] -2.793136680 -1.185134557
225s [9,] -3.218791382 -0.976577184
225s [10,] -2.913781498 -1.159347616
225s [11,] -2.550040927 -1.379942552
225s [12,] -2.851201009 -0.986658731
225s [13,] -3.034948391 -1.189945935
225s [14,] -3.508870813 -1.105959455
225s [15,] -2.486269684 -1.799588594
225s [16,] -2.247359234 -1.475864129
225s [17,] -2.556030025 -1.527547488
225s [18,] -2.737211646 -1.320701930
225s [19,] -2.196952220 -1.414201690
225s [20,] -2.670019387 -1.193504288
225s [21,] -2.437908677 -1.282302147
225s [22,] -2.618184048 -1.227195159
225s [23,] -3.322744244 -1.277970595
225s [24,] -2.454216458 -1.163245624
225s [25,] -2.671876500 -0.761820684
225s [26,] -2.743251740 -1.179857376
225s [27,] -2.624746217 -1.142735864
225s [28,] -2.672825041 -1.291247159
225s [29,] -2.735072351 -1.383610383
225s [30,] -2.915065539 -0.959728243
225s [31,] -2.858618431 -1.038910357
225s [32,] -2.448842723 -1.464741501
225s [33,] -2.712298010 -1.170470245
225s [34,] -2.538533811 -1.429567429
225s [35,] -2.859473685 -1.175621278
225s [36,] -2.977406137 -1.444807021
225s [37,] -2.615615966 -1.626433906
225s [38,] -2.961193964 -1.147207588
225s [39,] -3.276093744 -1.034105991
225s [40,] -2.734217097 -1.246899462
225s [41,] -2.855906065 -1.333883041
225s [42,] -3.180173667 -1.234065019
225s [43,] -3.271148796 -0.999271573
225s [44,] -2.513658115 -1.157865978
225s [45,] -2.376612229 -0.909993888
225s [46,] -2.926332764 -1.222493258
225s [47,] -2.664552365 -1.102284611
225s [48,] -3.093534795 -1.047855368
225s [49,] -2.608960510 -1.318177647
225s [50,] -2.855383990 -1.277497781
225s [51,] 0.944798547 -0.252278522
225s [52,] 0.526039193 -0.047854782
225s [53,] 1.057263977 -0.074312455
225s [54,] -0.433979126 0.009091732
225s [55,] 0.634843715 -0.104342507
225s [56,] -0.004903408 0.347378043
225s [57,] 0.643449570 0.164945702
225s [58,] -1.366371442 -0.078702751
225s [59,] 0.587620145 -0.116142881
225s [60,] -0.606315000 0.172835607
225s [61,] -1.197792083 -0.060244461
225s [62,] 0.047171823 0.001297281
225s [63,] -0.304777128 -0.268329019
225s [64,] 0.407104882 0.251354000
225s [65,] -0.599324044 -0.247953982
225s [66,] 0.586242816 -0.309239061
225s [67,] 0.049737584 0.411430044
225s [68,] -0.350479086 0.017232851
225s [69,] 0.383475287 -0.098497059
225s [70,] -0.538505058 -0.060237448
225s [71,] 0.573689229 0.436986807
225s [72,] -0.068099260 -0.274411656
225s [73,] 0.688911637 0.191773724
225s [74,] 0.296016781 0.266484114
225s [75,] 0.290456471 -0.217451116
225s [76,] 0.524850760 -0.264891364
225s [77,] 0.876844322 -0.123471530
225s [78,] 1.105342801 0.074198839
225s [79,] 0.282943440 0.146953213
225s [80,] -0.770520160 -0.388095545
225s [81,] -0.659671951 -0.090835767
225s [82,] -0.773754601 -0.149508121
225s [83,] -0.361413131 -0.165206503
225s [84,] 0.690955323 0.545521228
225s [85,] -0.068101581 0.534959854
225s [86,] 0.349613624 0.217765596
225s [87,] 0.819875139 -0.100674676
225s [88,] 0.276476880 -0.185243448
225s [89,] -0.297977388 0.144193304
225s [90,] -0.429034177 0.043926150
225s [91,] -0.241770172 0.377401082
225s [92,] 0.349802520 0.193825194
225s [93,] -0.304110769 -0.107677696
225s [94,] -1.309924333 -0.157884865
225s [95,] -0.245619974 0.166887693
225s [96,] -0.233590783 0.173648076
225s [97,] -0.181755443 0.139957206
225s [98,] 0.172617306 -0.093921306
225s [99,] -1.371076498 -0.425927061
225s [100,] -0.244002754 0.047593981
225s [101,] 1.909292764 0.992780951
225s [102,] 0.736039599 0.620230054
225s [103,] 2.096225912 0.436558712
225s [104,] 1.280148828 0.737243684
225s [105,] 1.737241394 0.715928467
225s [106,] 2.809247679 0.652356294
225s [107,] -0.266446237 0.724151014
225s [108,] 2.287768508 0.644216739
225s [109,] 1.625486934 0.570407258
225s [110,] 2.506761266 0.564094445
225s [111,] 1.215146861 0.258688099
225s [112,] 1.209106767 0.399532653
225s [113,] 1.680367819 0.322069366
225s [114,] 0.666708045 0.555940865
225s [115,] 1.010051141 0.556278956
225s [116,] 1.438700391 0.421524051
225s [117,] 1.340685631 0.556185066
225s [118,] 3.002029704 0.788601413
225s [119,] 3.146217501 0.713213277
225s [120,] 0.564510303 0.399762829
225s [121,] 1.972397649 0.412483586
225s [122,] 0.555431049 0.595011381
225s [123,] 2.868689336 0.646976648
225s [124,] 0.856780025 0.177787157
225s [125,] 1.748415331 0.585977929
225s [126,] 2.056941838 0.533395224
225s [127,] 0.740558081 0.182023256
225s [128,] 0.746358283 0.353568595
225s [129,] 1.499519377 0.609240585
225s [130,] 1.823831591 0.381216098
225s [131,] 2.278973757 0.398868932
225s [132,] 2.831928733 0.472780879
225s [133,] 1.553827190 0.592966924
225s [134,] 0.815878732 0.393917382
225s [135,] 0.937660987 0.873616514
225s [136,] 2.677908707 0.183313988
225s [137,] 1.618358079 0.726687759
225s [138,] 1.284238522 0.635367181
225s [139,] 0.627663864 0.340387484
225s [140,] 1.681985039 0.202775654
225s [141,] 1.846618987 0.427376511
225s [142,] 1.611276157 -0.054609716
225s [143,] 0.736039599 0.620230054
225s [144,] 2.033027739 0.624140523
225s [145,] 1.965646585 0.520883283
225s [146,] 1.550739354 0.126448902
225s [147,] 0.965917727 0.201625094
225s [148,] 1.269976749 0.298799697
225s [149,] 1.385581011 0.654834295
225s [150,] 0.748068790 0.626990436
225s >
225s autopkgtest [18:19:41]: test run-unit-test: -----------------------]
225s autopkgtest [18:19:41]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - -
225s run-unit-test PASS
226s autopkgtest [18:19:42]: test pkg-r-autopkgtest: preparing testbed
226s Reading package lists...
226s Building dependency tree...
226s Reading state information...
226s Starting pkgProblemResolver with broken count: 0
226s Starting 2 pkgProblemResolver with broken count: 0
226s Done
226s The following NEW packages will be installed:
226s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
226s dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
226s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
226s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
226s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
226s libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev
226s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3
226s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
226s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
226s libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
227s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded.
227s Need to get 82.3 MB of archives.
227s After this operation, 279 MB of additional disk space will be used.
227s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
227s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
227s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
235s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
235s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
235s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
235s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
235s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
235s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
237s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
237s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
238s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
251s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
252s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
252s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
252s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
254s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
263s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
263s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
263s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
263s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
263s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
263s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
264s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
273s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
273s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
273s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
273s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
273s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
273s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
273s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
273s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
280s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
280s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
280s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
280s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
284s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
284s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
284s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
285s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
285s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
285s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
285s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
286s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
286s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
286s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
287s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
287s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
287s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
287s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
287s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
287s Fetched 82.3 MB in 60s (1366 kB/s)
287s Selecting previously unselected package libisl23:s390x.
287s (Reading database ...
(Reading database ... 5%
(Reading database ... 10%
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(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 58698 files and directories currently installed.)
287s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
287s Unpacking libisl23:s390x (0.27-1) ...
287s Selecting previously unselected package libmpc3:s390x.
287s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
287s Unpacking libmpc3:s390x (1.3.1-1build2) ...
287s Selecting previously unselected package cpp-14-s390x-linux-gnu.
287s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
287s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
287s Selecting previously unselected package cpp-14.
287s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
287s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
287s Selecting previously unselected package cpp-s390x-linux-gnu.
287s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
287s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
287s Selecting previously unselected package cpp.
287s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
287s Unpacking cpp (4:14.2.0-1ubuntu1) ...
287s Selecting previously unselected package libcc1-0:s390x.
287s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
287s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
287s Selecting previously unselected package libitm1:s390x.
287s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_s390x.deb ...
287s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
287s Selecting previously unselected package libasan8:s390x.
287s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_s390x.deb ...
287s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
287s Selecting previously unselected package libubsan1:s390x.
287s Preparing to unpack .../09-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
287s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
287s Selecting previously unselected package libgcc-14-dev:s390x.
287s Preparing to unpack .../10-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
287s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
287s Selecting previously unselected package gcc-14-s390x-linux-gnu.
287s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
287s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package gcc-14.
288s Preparing to unpack .../12-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package gcc-s390x-linux-gnu.
288s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
288s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
288s Selecting previously unselected package gcc.
288s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
288s Unpacking gcc (4:14.2.0-1ubuntu1) ...
288s Selecting previously unselected package libstdc++-14-dev:s390x.
288s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package g++-14-s390x-linux-gnu.
288s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package g++-14.
288s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking g++-14 (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package g++-s390x-linux-gnu.
288s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
288s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
288s Selecting previously unselected package g++.
288s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
288s Unpacking g++ (4:14.2.0-1ubuntu1) ...
288s Selecting previously unselected package build-essential.
288s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ...
288s Unpacking build-essential (12.10ubuntu1) ...
288s Selecting previously unselected package dctrl-tools.
288s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ...
288s Unpacking dctrl-tools (2.24-3build3) ...
288s Selecting previously unselected package libgfortran-14-dev:s390x.
288s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
288s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package gfortran-14.
288s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
288s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
288s Selecting previously unselected package gfortran-s390x-linux-gnu.
288s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
288s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
288s Selecting previously unselected package gfortran.
288s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
288s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
288s Selecting previously unselected package icu-devtools.
288s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ...
288s Unpacking icu-devtools (76.1-1ubuntu2) ...
288s Selecting previously unselected package libblas-dev:s390x.
288s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ...
288s Unpacking libblas-dev:s390x (3.12.1-2) ...
288s Selecting previously unselected package libbz2-dev:s390x.
288s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ...
288s Unpacking libbz2-dev:s390x (1.0.8-6) ...
288s Selecting previously unselected package libdeflate-dev:s390x.
288s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ...
288s Unpacking libdeflate-dev:s390x (1.23-1) ...
288s Selecting previously unselected package libicu-dev:s390x.
288s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ...
288s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
288s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
288s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
288s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
289s Selecting previously unselected package libjpeg8-dev:s390x.
289s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
289s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
289s Selecting previously unselected package libjpeg-dev:s390x.
289s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
289s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
289s Selecting previously unselected package liblapack-dev:s390x.
289s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ...
289s Unpacking liblapack-dev:s390x (3.12.1-2) ...
289s Selecting previously unselected package libncurses-dev:s390x.
289s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ...
289s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
289s Selecting previously unselected package libpcre2-16-0:s390x.
289s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ...
289s Unpacking libpcre2-16-0:s390x (10.45-1) ...
289s Selecting previously unselected package libpcre2-32-0:s390x.
289s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ...
289s Unpacking libpcre2-32-0:s390x (10.45-1) ...
289s Selecting previously unselected package libpcre2-posix3:s390x.
289s Preparing to unpack .../39-libpcre2-posix3_10.45-1_s390x.deb ...
289s Unpacking libpcre2-posix3:s390x (10.45-1) ...
289s Selecting previously unselected package libpcre2-dev:s390x.
289s Preparing to unpack .../40-libpcre2-dev_10.45-1_s390x.deb ...
289s Unpacking libpcre2-dev:s390x (10.45-1) ...
289s Selecting previously unselected package libpkgconf3:s390x.
289s Preparing to unpack .../41-libpkgconf3_1.8.1-4_s390x.deb ...
289s Unpacking libpkgconf3:s390x (1.8.1-4) ...
289s Selecting previously unselected package zlib1g-dev:s390x.
289s Preparing to unpack .../42-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
289s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
289s Selecting previously unselected package libpng-dev:s390x.
289s Preparing to unpack .../43-libpng-dev_1.6.47-1_s390x.deb ...
289s Unpacking libpng-dev:s390x (1.6.47-1) ...
289s Selecting previously unselected package libreadline-dev:s390x.
289s Preparing to unpack .../44-libreadline-dev_8.2-6_s390x.deb ...
289s Unpacking libreadline-dev:s390x (8.2-6) ...
289s Selecting previously unselected package liblzma-dev:s390x.
289s Preparing to unpack .../45-liblzma-dev_5.6.4-1_s390x.deb ...
289s Unpacking liblzma-dev:s390x (5.6.4-1) ...
289s Selecting previously unselected package pkgconf-bin.
289s Preparing to unpack .../46-pkgconf-bin_1.8.1-4_s390x.deb ...
289s Unpacking pkgconf-bin (1.8.1-4) ...
289s Selecting previously unselected package pkgconf:s390x.
289s Preparing to unpack .../47-pkgconf_1.8.1-4_s390x.deb ...
289s Unpacking pkgconf:s390x (1.8.1-4) ...
289s Selecting previously unselected package libtirpc-dev:s390x.
289s Preparing to unpack .../48-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
289s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
289s Selecting previously unselected package r-base-dev.
289s Preparing to unpack .../49-r-base-dev_4.4.3-1_all.deb ...
289s Unpacking r-base-dev (4.4.3-1) ...
289s Selecting previously unselected package pkg-r-autopkgtest.
289s Preparing to unpack .../50-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
289s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
289s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
289s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
289s Setting up libreadline-dev:s390x (8.2-6) ...
289s Setting up libpcre2-16-0:s390x (10.45-1) ...
289s Setting up libpcre2-32-0:s390x (10.45-1) ...
289s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
289s Setting up libpkgconf3:s390x (1.8.1-4) ...
289s Setting up libmpc3:s390x (1.3.1-1build2) ...
289s Setting up icu-devtools (76.1-1ubuntu2) ...
289s Setting up pkgconf-bin (1.8.1-4) ...
289s Setting up liblzma-dev:s390x (5.6.4-1) ...
289s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
289s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
289s Setting up libpcre2-posix3:s390x (10.45-1) ...
289s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
289s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
289s Setting up libisl23:s390x (0.27-1) ...
289s Setting up libdeflate-dev:s390x (1.23-1) ...
289s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
289s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
289s Setting up libblas-dev:s390x (3.12.1-2) ...
289s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
289s Setting up dctrl-tools (2.24-3build3) ...
289s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
289s Setting up libbz2-dev:s390x (1.0.8-6) ...
289s Setting up libpcre2-dev:s390x (10.45-1) ...
289s Setting up libpng-dev:s390x (1.6.47-1) ...
289s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
289s Setting up pkgconf:s390x (1.8.1-4) ...
289s Setting up liblapack-dev:s390x (3.12.1-2) ...
289s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
289s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
289s Setting up cpp-14 (14.2.0-17ubuntu3) ...
289s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
289s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
289s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
289s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
289s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
289s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
289s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
289s Setting up cpp (4:14.2.0-1ubuntu1) ...
289s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
289s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
289s Setting up gcc-14 (14.2.0-17ubuntu3) ...
289s Setting up g++-14 (14.2.0-17ubuntu3) ...
289s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
289s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
289s Setting up gcc (4:14.2.0-1ubuntu1) ...
289s Setting up g++ (4:14.2.0-1ubuntu1) ...
289s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
289s Setting up build-essential (12.10ubuntu1) ...
289s Setting up gfortran (4:14.2.0-1ubuntu1) ...
289s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
289s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
289s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
289s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
289s Setting up r-base-dev (4.4.3-1) ...
289s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
289s Processing triggers for libc-bin (2.41-1ubuntu2) ...
289s Processing triggers for man-db (2.13.0-1) ...
290s Processing triggers for install-info (7.1.1-1) ...
291s autopkgtest [18:20:47]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
291s autopkgtest [18:20:47]: test pkg-r-autopkgtest: [-----------------------
291s Test: Try to load the R library pcaPP
291s
291s R version 4.4.3 (2025-02-28) -- "Trophy Case"
291s Copyright (C) 2025 The R Foundation for Statistical Computing
291s Platform: s390x-ibm-linux-gnu
291s
291s R is free software and comes with ABSOLUTELY NO WARRANTY.
291s You are welcome to redistribute it under certain conditions.
291s Type 'license()' or 'licence()' for distribution details.
291s
291s R is a collaborative project with many contributors.
291s Type 'contributors()' for more information and
291s 'citation()' on how to cite R or R packages in publications.
291s
291s Type 'demo()' for some demos, 'help()' for on-line help, or
291s 'help.start()' for an HTML browser interface to help.
291s Type 'q()' to quit R.
291s
291s > library('pcaPP')
291s >
291s >
291s Other tests are currently unsupported!
291s They will be progressively added.
291s autopkgtest [18:20:47]: test pkg-r-autopkgtest: -----------------------]
292s pkg-r-autopkgtest PASS
292s autopkgtest [18:20:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - -
292s autopkgtest [18:20:48]: @@@@@@@@@@@@@@@@@@@@ summary
292s run-unit-test PASS
292s pkg-r-autopkgtest PASS
310s nova [W] Using flock in prodstack6-s390x
310s Creating nova instance adt-plucky-s390x-r-cran-pcapp-20250315-181556-juju-7f2275-prod-proposed-migration-environment-15-ef0c5aef-e170-4aa9-9c1f-c32fe0e1e35e from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
310s nova [W] Timed out waiting for caec3375-d5ff-4669-b168-3f9dbe4fa0de to get deleted.