0s autopkgtest [18:05:54]: starting date and time: 2025-03-15 18:05:54+0000 0s autopkgtest [18:05:54]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [18:05:54]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nv918p_5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-hexbin --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-17.secgroup --name adt-plucky-s390x-r-cran-hexbin-20250315-180554-juju-7f2275-prod-proposed-migration-environment-2-09d09c9a-71bf-4019-a5a6-129dcaacb316 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 129s autopkgtest [18:08:03]: testbed dpkg architecture: s390x 129s autopkgtest [18:08:03]: testbed apt version: 2.9.33 129s autopkgtest [18:08:03]: @@@@@@@@@@@@@@@@@@@@ test bed setup 129s autopkgtest [18:08:03]: testbed release detected to be: None 130s autopkgtest [18:08:04]: updating testbed package index (apt update) 130s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 131s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 131s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 131s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 131s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 131s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 131s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 131s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 132s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 132s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 132s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 132s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 132s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 132s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 132s Fetched 1073 kB in 2s (631 kB/s) 133s Reading package lists... 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s Calculating upgrade... 134s Calculating upgrade... 134s The following packages were automatically installed and are no longer required: 134s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 134s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 134s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 134s linux-tools-6.11.0-8-generic 134s Use 'sudo apt autoremove' to remove them. 134s The following packages will be upgraded: 134s pinentry-curses python3-jinja2 strace 134s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Need to get 652 kB of archives. 134s After this operation, 27.6 kB of additional disk space will be used. 134s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 135s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 135s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 135s Fetched 652 kB in 1s (654 kB/s) 135s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 135s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 135s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 135s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 135s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 135s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 135s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 135s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 135s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 135s Setting up strace (6.13+ds-1ubuntu1) ... 135s Processing triggers for man-db (2.13.0-1) ... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 136s Solving dependencies... 136s The following packages will be REMOVED: 136s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 136s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 136s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 136s linux-tools-6.11.0-8-generic* 136s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 136s After this operation, 167 MB disk space will be freed. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 136s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 136s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 136s Removing libpython3.12t64:s390x (3.12.9-1) ... 136s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 136s Removing libnsl2:s390x (1.3.0-3build3) ... 136s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 137s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 137s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 138s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 138s Processing triggers for libc-bin (2.41-1ubuntu1) ... 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 138s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 138s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 138s autopkgtest [18:08:12]: upgrading testbed (apt dist-upgrade and autopurge) 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 138s Starting 2 pkgProblemResolver with broken count: 0 138s Done 139s Entering ResolveByKeep 139s 139s Calculating upgrade... 139s The following packages will be upgraded: 139s libc-bin libc-dev-bin libc6 libc6-dev locales 139s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s Need to get 9512 kB of archives. 139s After this operation, 8192 B of additional disk space will be used. 139s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 141s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 141s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 144s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 145s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 150s Preconfiguring packages ... 150s Fetched 9512 kB in 11s (837 kB/s) 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 150s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 150s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 151s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 151s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Setting up libc6:s390x (2.41-1ubuntu2) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 151s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 151s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Setting up libc-bin (2.41-1ubuntu2) ... 151s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 151s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 151s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 151s Setting up locales (2.41-1ubuntu2) ... 151s Generating locales (this might take a while)... 152s en_US.UTF-8... done 152s Generation complete. 152s Setting up libc-dev-bin (2.41-1ubuntu2) ... 152s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 152s Processing triggers for man-db (2.13.0-1) ... 153s Processing triggers for systemd (257.3-1ubuntu3) ... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s Starting pkgProblemResolver with broken count: 0 154s Starting 2 pkgProblemResolver with broken count: 0 154s Done 154s Solving dependencies... 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s autopkgtest [18:08:29]: rebooting testbed after setup commands that affected boot 172s autopkgtest [18:08:46]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 175s autopkgtest [18:08:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-hexbin 178s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-hexbin 1.28.5-1 (dsc) [2156 B] 178s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-hexbin 1.28.5-1 (tar) [1195 kB] 178s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-hexbin 1.28.5-1 (diff) [3108 B] 178s gpgv: Signature made Tue Jan 28 00:21:54 2025 UTC 178s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 178s gpgv: issuer "plessy@debian.org" 178s gpgv: Can't check signature: No public key 178s dpkg-source: warning: cannot verify inline signature for ./r-cran-hexbin_1.28.5-1.dsc: no acceptable signature found 178s autopkgtest [18:08:52]: testing package r-cran-hexbin version 1.28.5-1 179s autopkgtest [18:08:53]: build not needed 182s autopkgtest [18:08:56]: test run-unit-test: preparing testbed 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 183s The following NEW packages will be installed: 183s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 183s fonts-glyphicons-halflings fonts-mathjax libblas3 libcairo2 libdatrie1 183s libdeflate0 libfontconfig1 libfreetype6 libgfortran5 libgomp1 libgraphite2-3 183s libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap 183s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 183s liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 183s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 183s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 183s libxft2 libxrender1 libxss1 libxt6t64 node-normalize.css r-base-core 183s r-bioc-affy r-bioc-affyio r-bioc-biobase r-bioc-biocgenerics r-bioc-limma 183s r-bioc-preprocesscore r-bioc-zlibbioc r-cran-biocmanager r-cran-evaluate 183s r-cran-hexbin r-cran-highr r-cran-knitr r-cran-lattice r-cran-statmod 183s r-cran-xfun r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 183s 0 upgraded, 69 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 62.3 MB of archives. 183s After this operation, 153 MB of additional disk space will be used. 183s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 183s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 184s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 185s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 185s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 185s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 185s Get:7 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 185s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 187s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 188s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 188s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 188s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 188s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 188s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 189s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 189s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 189s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 189s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 189s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 189s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 190s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 190s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 190s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 190s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 190s Get:25 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 190s Get:26 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 191s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 191s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 191s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 193s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 194s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 194s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 194s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 194s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 194s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 194s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 194s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 194s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 194s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 195s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 195s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 195s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 195s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 195s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 195s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 196s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 196s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 196s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 196s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 196s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 196s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 217s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 218s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 220s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 221s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 221s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affyio s390x 1.76.0-2 [98.5 kB] 221s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB] 221s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-preprocesscore s390x 1.68.0+ds-2 [177 kB] 221s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-affy s390x 1.84.0-2 [2016 kB] 223s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB] 223s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-limma s390x 3.62.2+dfsg-1 [1973 kB] 225s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 225s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 226s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-hexbin s390x 1.28.5-1 [1583 kB] 227s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 228s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 228s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 228s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 233s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 234s Preconfiguring packages ... 234s Fetched 62.3 MB in 51s (1213 kB/s) 234s Selecting previously unselected package libfreetype6:s390x. 234s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 234s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 234s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 234s Selecting previously unselected package fonts-dejavu-mono. 234s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 234s Unpacking fonts-dejavu-mono (2.37-8) ... 234s Selecting previously unselected package fonts-dejavu-core. 234s Preparing to unpack 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(1:0.9.10-1.1build1) ... 235s Selecting previously unselected package libcairo2:s390x. 235s Preparing to unpack .../13-libcairo2_1.18.2-2_s390x.deb ... 235s Unpacking libcairo2:s390x (1.18.2-2) ... 235s Selecting previously unselected package libdatrie1:s390x. 235s Preparing to unpack .../14-libdatrie1_0.2.13-3build1_s390x.deb ... 235s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 235s Selecting previously unselected package libdeflate0:s390x. 235s Preparing to unpack .../15-libdeflate0_1.23-1_s390x.deb ... 235s Unpacking libdeflate0:s390x (1.23-1) ... 235s Selecting previously unselected package libgfortran5:s390x. 235s Preparing to unpack .../16-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 235s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 235s Selecting previously unselected package libgomp1:s390x. 235s Preparing to unpack .../17-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 235s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 235s Selecting previously unselected package libgraphite2-3:s390x. 235s Preparing to unpack .../18-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 235s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 235s Selecting previously unselected package libharfbuzz0b:s390x. 235s Preparing to unpack .../19-libharfbuzz0b_10.2.0-1_s390x.deb ... 235s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 235s Selecting previously unselected package x11-common. 235s Preparing to unpack .../20-x11-common_1%3a7.7+23ubuntu3_all.deb ... 235s Unpacking x11-common (1:7.7+23ubuntu3) ... 235s Selecting previously unselected package libice6:s390x. 235s Preparing to unpack .../21-libice6_2%3a1.1.1-1_s390x.deb ... 235s Unpacking libice6:s390x (2:1.1.1-1) ... 235s Selecting previously unselected package libjpeg-turbo8:s390x. 235s Preparing to unpack .../22-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 235s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 235s Selecting previously unselected package libjpeg8:s390x. 235s Preparing to unpack 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libpangocairo-1.0-0:s390x (1.56.2-1) ... 235s Selecting previously unselected package libpaper2:s390x. 235s Preparing to unpack .../34-libpaper2_2.2.5-0.3_s390x.deb ... 235s Unpacking libpaper2:s390x (2.2.5-0.3) ... 235s Selecting previously unselected package libpaper-utils. 235s Preparing to unpack .../35-libpaper-utils_2.2.5-0.3_s390x.deb ... 235s Unpacking libpaper-utils (2.2.5-0.3) ... 235s Selecting previously unselected package libsharpyuv0:s390x. 235s Preparing to unpack .../36-libsharpyuv0_1.5.0-0.1_s390x.deb ... 235s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 235s Selecting previously unselected package libsm6:s390x. 235s Preparing to unpack .../37-libsm6_2%3a1.2.4-1_s390x.deb ... 235s Unpacking libsm6:s390x (2:1.2.4-1) ... 235s Selecting previously unselected package libtcl8.6:s390x. 235s Preparing to unpack .../38-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 235s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 235s Selecting previously unselected package libjbig0:s390x. 235s 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libtk8.6:s390x (8.6.16-1) ... 235s Selecting previously unselected package libxt6t64:s390x. 235s Preparing to unpack .../45-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 235s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 235s Selecting previously unselected package node-normalize.css. 235s Preparing to unpack .../46-node-normalize.css_8.0.1-5_all.deb ... 235s Unpacking node-normalize.css (8.0.1-5) ... 235s Selecting previously unselected package zip. 235s Preparing to unpack .../47-zip_3.0-14ubuntu2_s390x.deb ... 235s Unpacking zip (3.0-14ubuntu2) ... 235s Selecting previously unselected package unzip. 235s Preparing to unpack .../48-unzip_6.0-28ubuntu6_s390x.deb ... 235s Unpacking unzip (6.0-28ubuntu6) ... 235s Selecting previously unselected package xdg-utils. 235s Preparing to unpack .../49-xdg-utils_1.2.1-2ubuntu1_all.deb ... 235s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 235s Selecting previously unselected package r-base-core. 235s Preparing to unpack .../50-r-base-core_4.4.3-1_s390x.deb ... 235s Unpacking r-base-core (4.4.3-1) ... 236s Selecting previously unselected package r-bioc-biocgenerics. 236s Preparing to unpack .../51-r-bioc-biocgenerics_0.52.0-2_all.deb ... 236s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 236s Selecting previously unselected package r-bioc-biobase. 236s Preparing to unpack .../52-r-bioc-biobase_2.66.0-2_s390x.deb ... 236s Unpacking r-bioc-biobase (2.66.0-2) ... 236s Selecting previously unselected package zlib1g-dev:s390x. 236s Preparing to unpack .../53-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 236s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 236s Selecting previously unselected package r-bioc-zlibbioc. 236s Preparing to unpack .../54-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 236s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 236s Selecting previously unselected package r-bioc-affyio. 236s Preparing to unpack .../55-r-bioc-affyio_1.76.0-2_s390x.deb ... 236s Unpacking r-bioc-affyio (1.76.0-2) ... 236s Selecting previously unselected package r-cran-biocmanager. 236s Preparing to unpack .../56-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ... 236s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ... 236s Selecting previously unselected package r-bioc-preprocesscore. 236s Preparing to unpack .../57-r-bioc-preprocesscore_1.68.0+ds-2_s390x.deb ... 236s Unpacking r-bioc-preprocesscore (1.68.0+ds-2) ... 236s Selecting previously unselected package r-bioc-affy. 236s Preparing to unpack .../58-r-bioc-affy_1.84.0-2_s390x.deb ... 236s Unpacking r-bioc-affy (1.84.0-2) ... 236s Selecting previously unselected package r-cran-statmod. 236s Preparing to unpack .../59-r-cran-statmod_1.5.0-1_s390x.deb ... 236s Unpacking r-cran-statmod (1.5.0-1) ... 236s Selecting previously unselected package r-bioc-limma. 236s Preparing to unpack .../60-r-bioc-limma_3.62.2+dfsg-1_s390x.deb ... 236s Unpacking r-bioc-limma (3.62.2+dfsg-1) ... 236s Selecting previously unselected package r-cran-evaluate. 236s Preparing to unpack .../61-r-cran-evaluate_1.0.3-1_all.deb ... 236s Unpacking r-cran-evaluate (1.0.3-1) ... 236s Selecting previously unselected package r-cran-lattice. 236s Preparing to unpack .../62-r-cran-lattice_0.22-6-1_s390x.deb ... 236s Unpacking r-cran-lattice (0.22-6-1) ... 236s Selecting previously unselected package r-cran-hexbin. 236s Preparing to unpack .../63-r-cran-hexbin_1.28.5-1_s390x.deb ... 236s Unpacking r-cran-hexbin (1.28.5-1) ... 236s Selecting previously unselected package r-cran-xfun. 236s Preparing to unpack .../64-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 236s Unpacking r-cran-xfun (0.51+dfsg-1) ... 236s Selecting previously unselected package r-cran-highr. 236s Preparing to unpack .../65-r-cran-highr_0.11+dfsg-1_all.deb ... 236s Unpacking r-cran-highr (0.11+dfsg-1) ... 236s Selecting previously unselected package r-cran-yaml. 236s Preparing to unpack .../66-r-cran-yaml_2.3.10-1_s390x.deb ... 236s Unpacking r-cran-yaml (2.3.10-1) ... 236s Selecting previously unselected package libjs-mathjax. 236s Preparing to unpack .../67-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 236s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 236s Selecting previously unselected package r-cran-knitr. 236s Preparing to unpack .../68-r-cran-knitr_1.49+dfsg-1_all.deb ... 236s Unpacking r-cran-knitr (1.49+dfsg-1) ... 236s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 236s Setting up libpixman-1-0:s390x (0.44.0-3) ... 236s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 236s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 236s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 236s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 236s Setting up libdatrie1:s390x (0.2.13-3build1) ... 236s Setting up libxcb-render0:s390x (1.17.0-2) ... 236s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 236s Setting up unzip (6.0-28ubuntu6) ... 236s Setting up x11-common (1:7.7+23ubuntu3) ... 237s Setting up libdeflate0:s390x (1.23-1) ... 237s Setting up libxcb-shm0:s390x (1.17.0-2) ... 237s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 237s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 237s Setting up zip (3.0-14ubuntu2) ... 237s Setting up libblas3:s390x (3.12.1-2) ... 237s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 237s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 237s Setting up fonts-dejavu-mono (2.37-8) ... 237s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 237s Setting up fonts-dejavu-core (2.37-8) ... 237s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 237s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 237s Setting up libwebp7:s390x (1.5.0-0.1) ... 237s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 237s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 237s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 237s Setting up libthai-data (0.1.29-2build1) ... 237s Setting up libxss1:s390x (1:1.2.3-1build3) ... 237s Setting up libpaper2:s390x (2.2.5-0.3) ... 237s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 237s Setting up node-normalize.css (8.0.1-5) ... 237s Setting up xdg-utils (1.2.1-2ubuntu1) ... 237s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 237s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 237s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 237s Setting up libice6:s390x (2:1.1.1-1) ... 237s Setting up liblapack3:s390x (3.12.1-2) ... 237s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 237s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 237s Setting up libpaper-utils (2.2.5-0.3) ... 237s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 237s Setting up libthai0:s390x (0.1.29-2build1) ... 237s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 237s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 237s Setting up libsm6:s390x (2:1.2.4-1) ... 237s Setting up fontconfig (2.15.0-2ubuntu1) ... 239s Regenerating fonts cache... done. 239s Setting up libxft2:s390x (2.3.6-1build1) ... 239s Setting up libtk8.6:s390x (8.6.16-1) ... 239s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 239s Setting up libcairo2:s390x (1.18.2-2) ... 239s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 239s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 239s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 239s Setting up r-base-core (4.4.3-1) ... 239s Creating config file /etc/R/Renviron with new version 239s Setting up r-cran-lattice (0.22-6-1) ... 239s Setting up r-cran-hexbin (1.28.5-1) ... 239s Setting up r-cran-statmod (1.5.0-1) ... 239s Setting up r-bioc-biocgenerics (0.52.0-2) ... 239s Setting up r-cran-xfun (0.51+dfsg-1) ... 239s Setting up r-cran-yaml (2.3.10-1) ... 239s Setting up r-cran-evaluate (1.0.3-1) ... 239s Setting up r-cran-highr (0.11+dfsg-1) ... 239s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ... 239s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 239s Setting up r-bioc-biobase (2.66.0-2) ... 239s Setting up r-bioc-limma (3.62.2+dfsg-1) ... 239s Setting up r-cran-knitr (1.49+dfsg-1) ... 239s Setting up r-bioc-preprocesscore (1.68.0+ds-2) ... 239s Setting up r-bioc-affyio (1.76.0-2) ... 239s Setting up r-bioc-affy (1.84.0-2) ... 239s Processing triggers for libc-bin (2.41-1ubuntu2) ... 239s Processing triggers for man-db (2.13.0-1) ... 240s Processing triggers for install-info (7.1.1-1) ... 241s autopkgtest [18:09:55]: test run-unit-test: [----------------------- 241s BEGIN TEST hdiffplot.R 241s 241s R version 4.4.3 (2025-02-28) -- "Trophy Case" 241s Copyright (C) 2025 The R Foundation for Statistical Computing 241s Platform: s390x-ibm-linux-gnu 241s 241s R is free software and comes with ABSOLUTELY NO WARRANTY. 241s You are welcome to redistribute it under certain conditions. 241s Type 'license()' or 'licence()' for distribution details. 241s 241s R is a collaborative project with many contributors. 241s Type 'contributors()' for more information and 241s 'citation()' on how to cite R or R packages in publications. 241s 241s Type 'demo()' for some demos, 'help()' for on-line help, or 241s 'help.start()' for an HTML browser interface to help. 241s Type 'q()' to quit R. 241s 241s > library(hexbin) 241s > 241s > if(R.version$major != "1" || as.numeric(R.version$minor) >= 7) 241s + RNGversion("1.6") 241s > set.seed(213) 241s > x1 <- rnorm(10000) 241s Warning messages: 241s 1: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 241s buggy version of Kinderman-Ramage generator used 241s 2: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 241s non-uniform 'Rounding' sampler used 241s 3: In RNGkind("Marsaglia-Multicarry", "Buggy Kinderman-Ramage", "Rounding") : 241s RNGkind: Marsaglia-Multicarry has poor statistical properties 241s > y1 <- rnorm(10000) 241s > 241s > x2 <- rnorm(10000,mean = .3) 241s > y2 <- rnorm(10000,mean = .3) 241s > 241s > rx <- range(x1,x2) 241s > ry <- range(y1,y2) 241s > 241s > str(bin1 <- hexbin(x1,y1, xbnds = rx, ybnds = ry)) 241s Formal class 'hexbin' [package "hexbin"] with 16 slots 241s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 241s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 241s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 241s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 241s ..@ xbins : num 30 241s ..@ shape : num 1 241s ..@ xbnds : num [1:2] -3.8 4.3 241s ..@ ybnds : num [1:2] -3.71 4.17 241s ..@ dimen : num [1:2] 36 31 241s ..@ n : int 10000 241s ..@ ncells: int 535 241s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 242s ..@ xlab : chr "x1" 242s ..@ ylab : chr "y1" 242s ..@ cID : NULL 242s ..@ cAtt : int(0) 242s > str(bin2 <- hexbin(x2,y2, xbnds = rx, ybnds = ry)) 242s Formal class 'hexbin' [package "hexbin"] with 16 slots 242s ..@ cell : int [1:545] 41 51 75 76 104 107 110 114 136 138 ... 242s ..@ count : int [1:545] 1 1 1 1 1 2 1 1 2 1 ... 242s ..@ xcm : num [1:545] -1.141 1.445 -0.493 -0.324 -0.995 ... 242s ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ... 242s ..@ xbins : num 30 242s ..@ shape : num 1 242s ..@ xbnds : num [1:2] -3.8 4.3 242s ..@ ybnds : num [1:2] -3.71 4.17 242s ..@ dimen : num [1:2] 36 31 242s ..@ n : int 10000 242s ..@ ncells: int 545 242s ..@ call : language hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 242s ..@ xlab : chr "x2" 242s ..@ ylab : chr "y2" 242s ..@ cID : NULL 242s ..@ cAtt : int(0) 242s > 242s > str(erode(bin1)) 242s Formal class 'erodebin' [package "hexbin"] with 19 slots 242s ..@ eroded: logi [1:535] FALSE FALSE FALSE FALSE FALSE FALSE ... 242s ..@ cdfcut: num 0.5 242s ..@ erode : int [1:71] 12 35 34 57 52 4 30 101 138 150 ... 242s ..@ cell : int [1:535] 16 20 48 70 74 75 76 80 99 101 ... 242s ..@ count : int [1:535] 1 1 1 1 1 1 1 1 1 1 ... 242s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 242s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 242s ..@ xbins : num 30 242s ..@ shape : num 1 242s ..@ xbnds : num [1:2] -3.8 4.3 242s ..@ ybnds : num [1:2] -3.71 4.17 242s ..@ dimen : num [1:2] 36 31 242s ..@ n : int 10000 242s ..@ ncells: int 535 242s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 242s ..@ xlab : chr "x1" 242s ..@ ylab : chr "y1" 242s ..@ cID : NULL 242s ..@ cAtt : int(0) 242s > 242s > str(smbin1 <- smooth.hexbin(bin1)) 242s Formal class 'smoothbin' [package "hexbin"] with 17 slots 242s ..@ wts : num [1:3] 48 4 1 242s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 242s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 242s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 242s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 242s ..@ xbins : num 34 242s ..@ shape : num 1 242s ..@ xbnds : num [1:2] -4.34 4.84 242s ..@ ybnds : num [1:2] -4.23 4.7 242s ..@ dimen : num [1:2] 40 35 242s ..@ n : int 10000 242s ..@ ncells: int 535 242s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 242s ..@ xlab : chr "x1" 242s ..@ ylab : chr "y1" 242s ..@ cID : NULL 242s ..@ cAtt : int(0) 242s > (smbin2 <- smooth.hexbin(bin2)) 242s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 242s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 242s > 242s > str(erodebin1 <- erode.hexbin(smbin1)) 242s Formal class 'erodebin' [package "hexbin"] with 19 slots 242s ..@ eroded: logi [1:906] FALSE FALSE FALSE FALSE FALSE FALSE ... 242s ..@ cdfcut: num 0.5 242s ..@ erode : int [1:73] 11 35 95 100 117 88 6 39 167 232 ... 242s ..@ cell : int [1:906] 17 18 19 21 22 23 51 52 53 54 ... 242s ..@ count : int [1:906] 1 1 1 1 1 1 1 4 5 2 ... 242s ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ... 242s ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ... 242s ..@ xbins : num 34 242s ..@ shape : num 1 242s ..@ xbnds : num [1:2] -4.34 4.84 242s ..@ ybnds : num [1:2] -4.23 4.7 242s ..@ dimen : num [1:2] 40 35 242s ..@ n : int 10000 242s ..@ ncells: int 535 242s ..@ call : language hexbin(x = x1, y = y1, xbnds = rx, ybnds = ry) 242s ..@ xlab : chr "x1" 242s ..@ ylab : chr "y1" 242s ..@ cID : NULL 242s ..@ cAtt : int(0) 242s > (erodebin2 <- erode.hexbin(smbin2)) 242s 'hexbin' object from call: hexbin(x = x2, y = y2, xbnds = rx, ybnds = ry) 242s n = 10000 points in nc = 545 hexagon cells in grid dimensions 40 by 35 242s > 242s > if(FALSE)## does not work -- what funny stuff is hdiffplot() doing??? 242s + par(mfrow = c(2,1)) 242s > 242s > if(exists("hdiffplot", mode="function")) { ## not yet in new hexbin 242s + hdiffplot(bin1,bin2, main = "Original N(0,*) Random bins") 242s + 242s + hdiffplot(smbin1,smbin2, main = "smooth.hexbin() smoothed bins") 242s + 242s + plot.new() 242s + hdiffplot(erodebin1,erodebin2, main = "erode.hexbin()d smoothed bins") 242s + }# not yet 242s > 242s BEGIN TEST hray.R 242s 242s R version 4.4.3 (2025-02-28) -- "Trophy Case" 242s Copyright (C) 2025 The R Foundation for Statistical Computing 242s Platform: s390x-ibm-linux-gnu 242s 242s R is free software and comes with ABSOLUTELY NO WARRANTY. 242s You are welcome to redistribute it under certain conditions. 242s Type 'license()' or 'licence()' for distribution details. 242s 242s R is a collaborative project with many contributors. 242s Type 'contributors()' for more information and 242s 'citation()' on how to cite R or R packages in publications. 242s 242s Type 'demo()' for some demos, 'help()' for on-line help, or 242s 'help.start()' for an HTML browser interface to help. 242s Type 'q()' to quit R. 242s 242s > library(hexbin) 242s > 242s > set.seed(572) 242s > 242s > x <- rnorm(100) 242s > y <- rnorm(100) 242s > val <- rnorm(100) 242s > inc <- abs(rnorm(100,sd = .3)) 242s > loB <- val-inc 242s > hiB <- val+inc 242s > 242s > if(exists("hray", mode="function")) { # 'real soon now' 242s + 242s + ## no confidence bounds 242s + plot(x,y,type = 'n') 242s + hray(x,y,val) 242s + 242s + ## confidence bounds 242s + plot(x,y,type = 'n') 242s + hray(x,y,val, lo = loB, hi = hiB) 242s + 242s + ## clockwise orientation 242s + plot(x,y,type = 'n') 242s + hray(x,y,val, loB, hiB, clockwise = TRUE) 242s + 242s + ## no tics and small filled dots 242s + plot(x,y,type = 'n') 242s + hray(x,y,val, loB, hiB, ticlength = FALSE, 242s + dotside = 20, dotlength = .025, dotden = -1) 242s + 242s + } 242s > 242s BEGIN TEST large.R 242s 242s R version 4.4.3 (2025-02-28) -- "Trophy Case" 242s Copyright (C) 2025 The R Foundation for Statistical Computing 242s Platform: s390x-ibm-linux-gnu 242s 242s R is free software and comes with ABSOLUTELY NO WARRANTY. 242s You are welcome to redistribute it under certain conditions. 242s Type 'license()' or 'licence()' for distribution details. 242s 242s R is a collaborative project with many contributors. 242s Type 'contributors()' for more information and 242s 'citation()' on how to cite R or R packages in publications. 242s 242s Type 'demo()' for some demos, 'help()' for on-line help, or 242s 'help.start()' for an HTML browser interface to help. 242s Type 'q()' to quit R. 242s 242s > library(hexbin) 242s > 242s > if(FALSE) { ## the following is still quite a bit from working/useful : 242s + 242s + ## what should that do? set a palette? 242s + rgb <- matrix(c( 242s + 15,15,15, 242s + 242s + 0, 0, 0, 242s + 1, 9,15, 242s + 9,15, 9, 242s + 15, 9, 9, 242s + 242s + 0, 0, 0, 242s + 0, 0, 0, 242s + 0, 0, 0, 242s + 0, 0, 0, 242s + 0, 0, 0, 242s + 0, 0, 0, 242s + 242s + 9, 9, 9, 242s + 0, 2, 7, 242s + 0, 7, 1, 242s + 8, 1, 1, 242s + 242s + 15, 2, 2, 242s + 11, 1, 1, 242s + 8, 1, 1, 242s + 5, 1, 1, 242s + 5, 1, 1, 242s + 15,15,15), ncol = 3, byrow = TRUE) 242s + 242s + ##ps.options(rasters=600,color=rgb/15,background=2) 242s + ##ps.options(color=rgb/15,background=2) 242s + postscript("large.ps",width = 10,height = 7.5) 242s + 242s + plot.hexbin(ans.25mil, style = "nest", lcex = .9) 242s + 242s + }## FALSE, i.e. nothing done 242s > 242s BEGIN TEST viewp-ex.R 242s 242s R version 4.4.3 (2025-02-28) -- "Trophy Case" 242s Copyright (C) 2025 The R Foundation for Statistical Computing 242s Platform: s390x-ibm-linux-gnu 242s 242s R is free software and comes with ABSOLUTELY NO WARRANTY. 242s You are welcome to redistribute it under certain conditions. 242s Type 'license()' or 'licence()' for distribution details. 242s 242s R is a collaborative project with many contributors. 242s Type 'contributors()' for more information and 242s 'citation()' on how to cite R or R packages in publications. 242s 242s Type 'demo()' for some demos, 'help()' for on-line help, or 242s 'help.start()' for an HTML browser interface to help. 242s Type 'q()' to quit R. 242s 242s > library(hexbin) 242s > 242s > ## a variation on Nicholas' post to bioconductor & example(hexViewport) 242s > set.seed(545) 242s > x <- rnorm(2^15) 242s > y <- 3*x - .2*x^2 + rnorm(2^15) 242s > hbin <- hexbin(x,y) 242s > 242s > ## 242s > hp <- hexViewport(hbin, newpage = TRUE) 242s > pushHexport(hp) 242s > library("grid") 242s > grid.rect() 242s > grid.xaxis() 242s > grid.yaxis() 242s > grid.hexagons(hbin, style = "centroid") 242s > hloess <- loess(y ~ x, data = hcell2xy(hbin), weights = hbin @ count) 242s > xx <- seq(hbin@xbnds[1], hbin@xbnds[2], length = 500) 242s > grid.lines(xx, predict(hloess, xx), 242s + gp = gpar(col = 'red', lwd = 2), default.units = "native") 242s > popViewport() 242s > 243s autopkgtest [18:09:57]: test run-unit-test: -----------------------] 243s autopkgtest [18:09:57]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 243s run-unit-test PASS 244s autopkgtest [18:09:58]: test pkg-r-autopkgtest: preparing testbed 244s Reading package lists... 244s Building dependency tree... 244s Reading state information... 244s Starting pkgProblemResolver with broken count: 0 244s Starting 2 pkgProblemResolver with broken count: 0 244s Done 244s The following NEW packages will be installed: 244s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 244s dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 244s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 244s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 244s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 244s libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev 244s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3 244s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 244s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 244s libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 244s 0 upgraded, 50 newly installed, 0 to remove and 0 not upgraded. 244s Need to get 81.4 MB of archives. 244s After this operation, 277 MB of additional disk space will be used. 244s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 245s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 245s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 255s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 255s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 255s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 255s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 255s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 255s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 258s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 259s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 260s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 282s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 282s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 282s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 282s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 285s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 300s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 300s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 300s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 300s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 300s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 300s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 301s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 312s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 312s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 312s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 312s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 312s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 313s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 313s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 313s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 326s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 326s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 326s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 326s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 332s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 332s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 333s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 333s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 333s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 334s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 334s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 334s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 334s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 334s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 334s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 335s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 335s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 335s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 335s Fetched 81.4 MB in 1min 30s (900 kB/s) 335s Selecting previously unselected package libisl23:s390x. 335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 64192 files and directories currently installed.) 335s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ... 335s Unpacking libisl23:s390x (0.27-1) ... 335s Selecting previously unselected package libmpc3:s390x. 335s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ... 335s Unpacking libmpc3:s390x (1.3.1-1build2) ... 335s Selecting previously unselected package cpp-14-s390x-linux-gnu. 335s Preparing to unpack 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Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 335s Selecting previously unselected package libasan8:s390x. 335s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_s390x.deb ... 335s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 335s Selecting previously unselected package libubsan1:s390x. 335s Preparing to unpack .../09-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 335s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 335s Selecting previously unselected package libgcc-14-dev:s390x. 335s Preparing to unpack .../10-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 335s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 335s Selecting previously unselected package gcc-14-s390x-linux-gnu. 335s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 335s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package gcc-14. 336s Preparing to unpack .../12-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package gcc-s390x-linux-gnu. 336s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 336s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 336s Selecting previously unselected package gcc. 336s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 336s Unpacking gcc (4:14.2.0-1ubuntu1) ... 336s Selecting previously unselected package libstdc++-14-dev:s390x. 336s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package g++-14-s390x-linux-gnu. 336s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package g++-14. 336s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking g++-14 (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package g++-s390x-linux-gnu. 336s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 336s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 336s Selecting previously unselected package g++. 336s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 336s Unpacking g++ (4:14.2.0-1ubuntu1) ... 336s Selecting previously unselected package build-essential. 336s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ... 336s Unpacking build-essential (12.10ubuntu1) ... 336s Selecting previously unselected package dctrl-tools. 336s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ... 336s Unpacking dctrl-tools (2.24-3build3) ... 336s Selecting previously unselected package libgfortran-14-dev:s390x. 336s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 336s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package gfortran-14. 336s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 336s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 336s Selecting previously unselected package gfortran-s390x-linux-gnu. 336s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 336s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 336s Selecting previously unselected package gfortran. 336s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 336s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 336s Selecting previously unselected package icu-devtools. 336s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ... 336s Unpacking icu-devtools (76.1-1ubuntu2) ... 336s Selecting previously unselected package libblas-dev:s390x. 336s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ... 336s Unpacking libblas-dev:s390x (3.12.1-2) ... 336s Selecting previously unselected package libbz2-dev:s390x. 336s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ... 336s Unpacking libbz2-dev:s390x (1.0.8-6) ... 336s Selecting previously unselected package libdeflate-dev:s390x. 336s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ... 336s Unpacking libdeflate-dev:s390x (1.23-1) ... 336s Selecting previously unselected package libicu-dev:s390x. 336s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ... 336s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 336s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 336s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 336s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 336s Selecting previously unselected package libjpeg8-dev:s390x. 336s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 336s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 336s Selecting previously unselected package libjpeg-dev:s390x. 336s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 336s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 336s Selecting previously unselected package liblapack-dev:s390x. 336s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ... 336s Unpacking liblapack-dev:s390x (3.12.1-2) ... 337s Selecting previously unselected package libncurses-dev:s390x. 337s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ... 337s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 337s Selecting previously unselected package libpcre2-16-0:s390x. 337s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ... 337s Unpacking libpcre2-16-0:s390x (10.45-1) ... 337s Selecting previously unselected package libpcre2-32-0:s390x. 337s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ... 337s Unpacking libpcre2-32-0:s390x (10.45-1) ... 337s Selecting previously unselected package libpcre2-posix3:s390x. 337s Preparing to unpack .../39-libpcre2-posix3_10.45-1_s390x.deb ... 337s Unpacking libpcre2-posix3:s390x (10.45-1) ... 337s Selecting previously unselected package libpcre2-dev:s390x. 337s Preparing to unpack .../40-libpcre2-dev_10.45-1_s390x.deb ... 337s Unpacking libpcre2-dev:s390x (10.45-1) ... 337s Selecting previously unselected package libpkgconf3:s390x. 337s Preparing to unpack .../41-libpkgconf3_1.8.1-4_s390x.deb ... 337s Unpacking libpkgconf3:s390x (1.8.1-4) ... 337s Selecting previously unselected package libpng-dev:s390x. 337s Preparing to unpack .../42-libpng-dev_1.6.47-1_s390x.deb ... 337s Unpacking libpng-dev:s390x (1.6.47-1) ... 337s Selecting previously unselected package libreadline-dev:s390x. 337s Preparing to unpack .../43-libreadline-dev_8.2-6_s390x.deb ... 337s Unpacking libreadline-dev:s390x (8.2-6) ... 337s Selecting previously unselected package liblzma-dev:s390x. 337s Preparing to unpack .../44-liblzma-dev_5.6.4-1_s390x.deb ... 337s Unpacking liblzma-dev:s390x (5.6.4-1) ... 337s Selecting previously unselected package pkgconf-bin. 337s Preparing to unpack .../45-pkgconf-bin_1.8.1-4_s390x.deb ... 337s Unpacking pkgconf-bin (1.8.1-4) ... 337s Selecting previously unselected package pkgconf:s390x. 337s Preparing to unpack .../46-pkgconf_1.8.1-4_s390x.deb ... 337s Unpacking pkgconf:s390x (1.8.1-4) ... 337s Selecting previously unselected package libtirpc-dev:s390x. 337s Preparing to unpack .../47-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 337s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 337s Selecting previously unselected package r-base-dev. 337s Preparing to unpack .../48-r-base-dev_4.4.3-1_all.deb ... 337s Unpacking r-base-dev (4.4.3-1) ... 337s Selecting previously unselected package pkg-r-autopkgtest. 337s Preparing to unpack .../49-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 337s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 337s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 337s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 337s Setting up libpng-dev:s390x (1.6.47-1) ... 337s Setting up libreadline-dev:s390x (8.2-6) ... 337s Setting up libpcre2-16-0:s390x (10.45-1) ... 337s Setting up libpcre2-32-0:s390x (10.45-1) ... 337s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 337s Setting up libpkgconf3:s390x (1.8.1-4) ... 337s Setting up libmpc3:s390x (1.3.1-1build2) ... 337s Setting up icu-devtools (76.1-1ubuntu2) ... 337s Setting up pkgconf-bin (1.8.1-4) ... 337s Setting up liblzma-dev:s390x (5.6.4-1) ... 337s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 337s Setting up libpcre2-posix3:s390x (10.45-1) ... 337s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 337s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 337s Setting up libisl23:s390x (0.27-1) ... 337s Setting up libdeflate-dev:s390x (1.23-1) ... 337s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 337s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 337s Setting up libblas-dev:s390x (3.12.1-2) ... 337s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 337s Setting up dctrl-tools (2.24-3build3) ... 337s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 337s Setting up libbz2-dev:s390x (1.0.8-6) ... 337s Setting up libpcre2-dev:s390x (10.45-1) ... 337s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 337s Setting up pkgconf:s390x (1.8.1-4) ... 337s Setting up liblapack-dev:s390x (3.12.1-2) ... 337s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 337s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 337s Setting up cpp-14 (14.2.0-17ubuntu3) ... 337s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 337s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 337s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 337s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 337s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 337s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 337s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 337s Setting up cpp (4:14.2.0-1ubuntu1) ... 337s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 337s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 337s Setting up gcc-14 (14.2.0-17ubuntu3) ... 337s Setting up g++-14 (14.2.0-17ubuntu3) ... 337s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 337s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 337s Setting up gcc (4:14.2.0-1ubuntu1) ... 337s Setting up g++ (4:14.2.0-1ubuntu1) ... 337s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 337s Setting up build-essential (12.10ubuntu1) ... 337s Setting up gfortran (4:14.2.0-1ubuntu1) ... 337s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 337s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 337s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 337s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 337s Setting up r-base-dev (4.4.3-1) ... 337s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 337s Processing triggers for libc-bin (2.41-1ubuntu2) ... 337s Processing triggers for man-db (2.13.0-1) ... 338s Processing triggers for install-info (7.1.1-1) ... 339s autopkgtest [18:11:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 339s autopkgtest [18:11:33]: test pkg-r-autopkgtest: [----------------------- 339s Test: Try to load the R library hexbin 339s 339s R version 4.4.3 (2025-02-28) -- "Trophy Case" 339s Copyright (C) 2025 The R Foundation for Statistical Computing 339s Platform: s390x-ibm-linux-gnu 339s 339s R is free software and comes with ABSOLUTELY NO WARRANTY. 339s You are welcome to redistribute it under certain conditions. 339s Type 'license()' or 'licence()' for distribution details. 339s 339s R is a collaborative project with many contributors. 339s Type 'contributors()' for more information and 339s 'citation()' on how to cite R or R packages in publications. 339s 339s Type 'demo()' for some demos, 'help()' for on-line help, or 339s 'help.start()' for an HTML browser interface to help. 339s Type 'q()' to quit R. 339s 339s > library('hexbin') 339s > 339s > 339s Other tests are currently unsupported! 339s They will be progressively added. 339s autopkgtest [18:11:33]: test pkg-r-autopkgtest: -----------------------] 340s autopkgtest [18:11:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 340s pkg-r-autopkgtest PASS 340s autopkgtest [18:11:34]: @@@@@@@@@@@@@@@@@@@@ summary 340s run-unit-test PASS 340s pkg-r-autopkgtest PASS 358s nova [W] Using flock in prodstack6-s390x 358s Creating nova instance adt-plucky-s390x-r-cran-hexbin-20250315-180554-juju-7f2275-prod-proposed-migration-environment-2-09d09c9a-71bf-4019-a5a6-129dcaacb316 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 358s nova [W] Timed out waiting for 57aa6454-0aa1-4a87-b88a-c77a9588aee0 to get deleted.