0s autopkgtest [17:59:00]: starting date and time: 2025-03-15 17:59:00+0000
  0s autopkgtest [17:59:00]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:59:00]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5nxocvsr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-epi --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-17.secgroup --name adt-plucky-s390x-r-cran-epi-20250315-175900-juju-7f2275-prod-proposed-migration-environment-2-fc71bfef-b9c6-48b4-ac72-a5e14c848cdf --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 67s autopkgtest [18:00:07]: testbed dpkg architecture: s390x
 67s autopkgtest [18:00:07]: testbed apt version: 2.9.33
 68s autopkgtest [18:00:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 68s autopkgtest [18:00:08]: testbed release detected to be: None
 69s autopkgtest [18:00:09]: updating testbed package index (apt update)
 69s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
 69s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
 70s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
 70s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
 70s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
 70s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
 70s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
 70s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
 70s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
 70s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
 70s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
 70s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
 70s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
 70s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
 70s Fetched 1073 kB in 1s (975 kB/s)
 71s Reading package lists...
 72s Reading package lists...
 72s Building dependency tree...
 72s Reading state information...
 72s Calculating upgrade...
 72s Calculating upgrade...
 72s The following packages were automatically installed and are no longer required:
 72s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
 72s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
 72s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
 72s   linux-tools-6.11.0-8-generic
 72s Use 'sudo apt autoremove' to remove them.
 72s The following packages will be upgraded:
 72s   pinentry-curses python3-jinja2 strace
 72s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 72s Need to get 652 kB of archives.
 72s After this operation, 27.6 kB of additional disk space will be used.
 72s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
 73s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
 73s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
 73s Fetched 652 kB in 1s (742 kB/s)
 73s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
 73s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
 73s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
 73s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
 73s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
 73s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
 73s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
 73s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
 73s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
 73s Setting up strace (6.13+ds-1ubuntu1) ...
 73s Processing triggers for man-db (2.13.0-1) ...
 74s Reading package lists...
 74s Building dependency tree...
 74s Reading state information...
 74s Solving dependencies...
 74s The following packages will be REMOVED:
 74s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
 74s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
 74s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
 74s   linux-tools-6.11.0-8-generic*
 75s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
 75s After this operation, 167 MB disk space will be freed.
 75s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
 75s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
 75s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
 75s Removing libpython3.12t64:s390x (3.12.9-1) ...
 75s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
 75s Removing libnsl2:s390x (1.3.0-3build3) ...
 75s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
 75s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
 75s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
 76s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 76s Processing triggers for libc-bin (2.41-1ubuntu1) ...
 76s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
 76s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
 76s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
 76s autopkgtest [18:00:16]: upgrading testbed (apt dist-upgrade and autopurge)
 76s Reading package lists...
 76s Building dependency tree...
 76s Reading state information...
 77s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
 77s Starting 2 pkgProblemResolver with broken count: 0
 77s Done
 77s Entering ResolveByKeep
 77s 
 77s Calculating upgrade...
 77s The following packages will be upgraded:
 77s   libc-bin libc-dev-bin libc6 libc6-dev locales
 77s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 77s Need to get 9512 kB of archives.
 77s After this operation, 8192 B of additional disk space will be used.
 77s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
 78s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
 78s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
 78s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
 78s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
 79s Preconfiguring packages ...
 79s Fetched 9512 kB in 1s (6501 kB/s)
 79s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
 79s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
 79s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 79s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
 79s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 79s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
 79s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 79s Setting up libc6:s390x (2.41-1ubuntu2) ...
 79s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
 79s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
 79s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 79s Setting up libc-bin (2.41-1ubuntu2) ...
 79s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
 79s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
 79s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
 79s Setting up locales (2.41-1ubuntu2) ...
 80s Generating locales (this might take a while)...
 81s   en_US.UTF-8... done
 81s Generation complete.
 81s Setting up libc-dev-bin (2.41-1ubuntu2) ...
 81s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
 81s Processing triggers for man-db (2.13.0-1) ...
 81s Processing triggers for systemd (257.3-1ubuntu3) ...
 82s Reading package lists...
 82s Building dependency tree...
 82s Reading state information...
 83s Starting pkgProblemResolver with broken count: 0
 83s Starting 2 pkgProblemResolver with broken count: 0
 83s Done
 83s Solving dependencies...
 83s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
 83s autopkgtest [18:00:23]: rebooting testbed after setup commands that affected boot
 87s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
101s autopkgtest [18:00:41]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
104s autopkgtest [18:00:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-epi
106s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-epi 2.59-1 (dsc) [2265 B]
106s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-epi 2.59-1 (tar) [3198 kB]
106s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-epi 2.59-1 (diff) [5404 B]
106s gpgv: Signature made Thu Jan 23 00:05:30 2025 UTC
106s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
106s gpgv:                issuer "plessy@debian.org"
106s gpgv: Can't check signature: No public key
106s dpkg-source: warning: cannot verify inline signature for ./r-cran-epi_2.59-1.dsc: no acceptable signature found
106s autopkgtest [18:00:46]: testing package r-cran-epi version 2.59-1
106s autopkgtest [18:00:46]: build not needed
110s autopkgtest [18:00:50]: test vignette: preparing testbed
110s Reading package lists...
110s Building dependency tree...
110s Reading state information...
110s Starting pkgProblemResolver with broken count: 0
110s Starting 2 pkgProblemResolver with broken count: 0
110s Done
111s The following NEW packages will be installed:
111s   fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3
111s   libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5
111s   libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8
111s   libjpeg8 liblapack3 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0
111s   libpangoft2-1.0-0 libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6
111s   libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0
111s   libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core
111s   r-cran-boot r-cran-cli r-cran-cmprsk r-cran-cpp11 r-cran-data.table
111s   r-cran-dplyr r-cran-epi r-cran-etm r-cran-fansi r-cran-generics r-cran-glue
111s   r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4 r-cran-magrittr
111s   r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa r-cran-nlme r-cran-nloptr
111s   r-cran-numderiv r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plyr
111s   r-cran-popepi r-cran-purrr r-cran-r6 r-cran-rbibutils r-cran-rcpp
111s   r-cran-rcpparmadillo r-cran-rcppeigen r-cran-rdpack r-cran-reformulas
111s   r-cran-rlang r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival
111s   r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs
111s   r-cran-withr r-cran-zoo unzip x11-common xdg-utils zip
111s 0 upgraded, 94 newly installed, 0 to remove and 0 not upgraded.
111s Need to get 94.1 MB of archives.
111s After this operation, 183 MB of additional disk space will be used.
111s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
111s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
111s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
112s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
112s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
112s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
112s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
112s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
112s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
112s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
112s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
112s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
112s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
112s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
112s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
112s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
112s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
112s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
112s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
112s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
112s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
112s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
112s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
112s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
112s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
112s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
112s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
112s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
112s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
112s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
112s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
112s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
112s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
112s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
112s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
112s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
112s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
112s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
112s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
112s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
112s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
112s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
112s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
112s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
113s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
113s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
113s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-boot all 1.3-31-1 [635 kB]
113s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
113s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
113s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
113s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB]
113s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cmprsk s390x 2.2-12-1 [108 kB]
113s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
113s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-data.table s390x 1.17.0+dfsg-1 [2167 kB]
113s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB]
113s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
113s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
113s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
113s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
113s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
113s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
114s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
114s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
114s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
114s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
114s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
114s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
114s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyselect s390x 1.2.1+dfsg-1 [222 kB]
114s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dplyr s390x 1.1.4-4 [1537 kB]
114s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
114s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
114s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpparmadillo s390x 14.2.3-1-1 [851 kB]
114s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-etm s390x 1.1.1-1 [474 kB]
114s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
114s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plyr s390x 1.8.9-1 [835 kB]
114s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-numderiv all 2016.8-1.1-3 [115 kB]
114s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-zoo s390x 1.8-13-1 [998 kB]
114s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB]
114s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB]
114s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-epi s390x 2.59-1 [3402 kB]
114s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-minqa s390x 1.2.8-1 [139 kB]
114s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libnlopt0 s390x 2.7.1-6ubuntu3 [227 kB]
114s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nloptr s390x 2.1.1-1 [252 kB]
114s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rbibutils s390x 2.3-1 [1041 kB]
114s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rdpack all 2.6.2-1syncable1 [756 kB]
114s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-reformulas all 0.4.0-1 [91.5 kB]
114s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcppeigen s390x 0.3.4.0.2-1 [1429 kB]
114s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-statmod s390x 1.5.0-1 [294 kB]
114s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lme4 s390x 1.1-36-1 [4141 kB]
114s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-popepi all 0.4.13+dfsg-1 [1151 kB]
114s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-purrr s390x 1.0.4-1 [553 kB]
114s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringi s390x 1.8.4-1build1 [917 kB]
115s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringr all 1.5.1-1 [290 kB]
115s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB]
115s Preconfiguring packages ...
115s Fetched 94.1 MB in 4s (24.9 MB/s)
115s Selecting previously unselected package libfreetype6:s390x.
115s (Reading database ... 
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115s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
115s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
115s Selecting previously unselected package fonts-dejavu-mono.
115s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ...
115s Unpacking fonts-dejavu-mono (2.37-8) ...
115s Selecting previously unselected package fonts-dejavu-core.
115s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ...
115s Unpacking fonts-dejavu-core (2.37-8) ...
115s Selecting previously unselected package fontconfig-config.
115s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
115s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
115s Selecting previously unselected package libfontconfig1:s390x.
115s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
115s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
115s Selecting previously unselected package fontconfig.
115s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
115s Unpacking fontconfig (2.15.0-2ubuntu1) ...
115s Selecting previously unselected package libblas3:s390x.
115s Preparing to unpack .../06-libblas3_3.12.1-2_s390x.deb ...
115s Unpacking libblas3:s390x (3.12.1-2) ...
115s Selecting previously unselected package libpixman-1-0:s390x.
115s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_s390x.deb ...
115s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
115s Selecting previously unselected package libxcb-render0:s390x.
115s Preparing to unpack .../08-libxcb-render0_1.17.0-2_s390x.deb ...
115s Unpacking libxcb-render0:s390x (1.17.0-2) ...
115s Selecting previously unselected package libxcb-shm0:s390x.
115s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_s390x.deb ...
115s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
115s Selecting previously unselected package libxrender1:s390x.
115s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
115s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
115s Selecting previously unselected package libcairo2:s390x.
115s Preparing to unpack .../11-libcairo2_1.18.2-2_s390x.deb ...
115s Unpacking libcairo2:s390x (1.18.2-2) ...
115s Selecting previously unselected package libdatrie1:s390x.
115s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_s390x.deb ...
115s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
115s Selecting previously unselected package libdeflate0:s390x.
115s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ...
115s Unpacking libdeflate0:s390x (1.23-1) ...
115s Selecting previously unselected package libgfortran5:s390x.
115s Preparing to unpack .../14-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
115s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
115s Selecting previously unselected package libgomp1:s390x.
115s Preparing to unpack .../15-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
115s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
115s Selecting previously unselected package libgraphite2-3:s390x.
115s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
115s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
115s Selecting previously unselected package libharfbuzz0b:s390x.
115s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_s390x.deb ...
115s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
116s Selecting previously unselected package x11-common.
116s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ...
116s Unpacking x11-common (1:7.7+23ubuntu3) ...
116s Selecting previously unselected package libice6:s390x.
116s Preparing to unpack .../19-libice6_2%3a1.1.1-1_s390x.deb ...
116s Unpacking libice6:s390x (2:1.1.1-1) ...
116s Selecting previously unselected package libjpeg-turbo8:s390x.
116s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
116s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
116s Selecting previously unselected package libjpeg8:s390x.
116s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_s390x.deb ...
116s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
116s Selecting previously unselected package liblapack3:s390x.
116s Preparing to unpack .../22-liblapack3_3.12.1-2_s390x.deb ...
116s Unpacking liblapack3:s390x (3.12.1-2) ...
116s Selecting previously unselected package libthai-data.
116s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ...
116s Unpacking libthai-data (0.1.29-2build1) ...
116s Selecting previously unselected package libthai0:s390x.
116s Preparing to unpack .../24-libthai0_0.1.29-2build1_s390x.deb ...
116s Unpacking libthai0:s390x (0.1.29-2build1) ...
116s Selecting previously unselected package libpango-1.0-0:s390x.
116s Preparing to unpack .../25-libpango-1.0-0_1.56.2-1_s390x.deb ...
116s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
116s Selecting previously unselected package libpangoft2-1.0-0:s390x.
116s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
116s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
116s Selecting previously unselected package libpangocairo-1.0-0:s390x.
116s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
116s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
116s Selecting previously unselected package libpaper2:s390x.
116s Preparing to unpack .../28-libpaper2_2.2.5-0.3_s390x.deb ...
116s Unpacking libpaper2:s390x (2.2.5-0.3) ...
116s Selecting previously unselected package libpaper-utils.
116s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_s390x.deb ...
116s Unpacking libpaper-utils (2.2.5-0.3) ...
116s Selecting previously unselected package libsharpyuv0:s390x.
116s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_s390x.deb ...
116s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
116s Selecting previously unselected package libsm6:s390x.
116s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_s390x.deb ...
116s Unpacking libsm6:s390x (2:1.2.4-1) ...
116s Selecting previously unselected package libtcl8.6:s390x.
116s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
116s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
116s Selecting previously unselected package libjbig0:s390x.
116s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
116s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
116s Selecting previously unselected package libwebp7:s390x.
116s Preparing to unpack .../34-libwebp7_1.5.0-0.1_s390x.deb ...
116s Unpacking libwebp7:s390x (1.5.0-0.1) ...
116s Selecting previously unselected package libtiff6:s390x.
116s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
116s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
116s Selecting previously unselected package libxft2:s390x.
116s Preparing to unpack .../36-libxft2_2.3.6-1build1_s390x.deb ...
116s Unpacking libxft2:s390x (2.3.6-1build1) ...
116s Selecting previously unselected package libxss1:s390x.
116s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_s390x.deb ...
116s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
116s Selecting previously unselected package libtk8.6:s390x.
116s Preparing to unpack .../38-libtk8.6_8.6.16-1_s390x.deb ...
116s Unpacking libtk8.6:s390x (8.6.16-1) ...
116s Selecting previously unselected package libxt6t64:s390x.
116s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
116s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
116s Selecting previously unselected package zip.
116s Preparing to unpack .../40-zip_3.0-14ubuntu2_s390x.deb ...
116s Unpacking zip (3.0-14ubuntu2) ...
116s Selecting previously unselected package unzip.
116s Preparing to unpack .../41-unzip_6.0-28ubuntu6_s390x.deb ...
116s Unpacking unzip (6.0-28ubuntu6) ...
116s Selecting previously unselected package xdg-utils.
116s Preparing to unpack .../42-xdg-utils_1.2.1-2ubuntu1_all.deb ...
116s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
116s Selecting previously unselected package r-base-core.
116s Preparing to unpack .../43-r-base-core_4.4.3-1_s390x.deb ...
116s Unpacking r-base-core (4.4.3-1) ...
116s Selecting previously unselected package r-cran-littler.
116s Preparing to unpack .../44-r-cran-littler_0.3.20-2_s390x.deb ...
116s Unpacking r-cran-littler (0.3.20-2) ...
116s Selecting previously unselected package littler.
116s Preparing to unpack .../45-littler_0.3.20-2_all.deb ...
116s Unpacking littler (0.3.20-2) ...
116s Selecting previously unselected package r-cran-boot.
116s Preparing to unpack .../46-r-cran-boot_1.3-31-1_all.deb ...
116s Unpacking r-cran-boot (1.3-31-1) ...
116s Selecting previously unselected package r-cran-cli.
116s Preparing to unpack .../47-r-cran-cli_3.6.4-1_s390x.deb ...
116s Unpacking r-cran-cli (3.6.4-1) ...
116s Selecting previously unselected package r-cran-lattice.
116s Preparing to unpack .../48-r-cran-lattice_0.22-6-1_s390x.deb ...
116s Unpacking r-cran-lattice (0.22-6-1) ...
116s Selecting previously unselected package r-cran-matrix.
116s Preparing to unpack .../49-r-cran-matrix_1.7-3-1_s390x.deb ...
116s Unpacking r-cran-matrix (1.7-3-1) ...
116s Selecting previously unselected package r-cran-survival.
116s Preparing to unpack .../50-r-cran-survival_3.8-3-1_s390x.deb ...
116s Unpacking r-cran-survival (3.8-3-1) ...
116s Selecting previously unselected package r-cran-cmprsk.
116s Preparing to unpack .../51-r-cran-cmprsk_2.2-12-1_s390x.deb ...
116s Unpacking r-cran-cmprsk (2.2-12-1) ...
116s Selecting previously unselected package r-cran-cpp11.
116s Preparing to unpack .../52-r-cran-cpp11_0.5.2-1_all.deb ...
116s Unpacking r-cran-cpp11 (0.5.2-1) ...
116s Selecting previously unselected package r-cran-data.table.
116s Preparing to unpack .../53-r-cran-data.table_1.17.0+dfsg-1_s390x.deb ...
116s Unpacking r-cran-data.table (1.17.0+dfsg-1) ...
116s Selecting previously unselected package r-cran-generics.
116s Preparing to unpack .../54-r-cran-generics_0.1.3-1_all.deb ...
116s Unpacking r-cran-generics (0.1.3-1) ...
116s Selecting previously unselected package r-cran-glue.
116s Preparing to unpack .../55-r-cran-glue_1.8.0-1_s390x.deb ...
116s Unpacking r-cran-glue (1.8.0-1) ...
116s Selecting previously unselected package r-cran-rlang.
116s Preparing to unpack .../56-r-cran-rlang_1.1.5-1_s390x.deb ...
116s Unpacking r-cran-rlang (1.1.5-1) ...
116s Selecting previously unselected package r-cran-lifecycle.
116s Preparing to unpack .../57-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
116s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
116s Selecting previously unselected package r-cran-magrittr.
116s Preparing to unpack .../58-r-cran-magrittr_2.0.3-1_s390x.deb ...
116s Unpacking r-cran-magrittr (2.0.3-1) ...
116s Selecting previously unselected package r-cran-utf8.
116s Preparing to unpack .../59-r-cran-utf8_1.2.4-1_s390x.deb ...
116s Unpacking r-cran-utf8 (1.2.4-1) ...
116s Selecting previously unselected package r-cran-vctrs.
116s Preparing to unpack .../60-r-cran-vctrs_0.6.5-1_s390x.deb ...
116s Unpacking r-cran-vctrs (0.6.5-1) ...
116s Selecting previously unselected package r-cran-pillar.
116s Preparing to unpack .../61-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
116s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
116s Selecting previously unselected package r-cran-r6.
116s Preparing to unpack .../62-r-cran-r6_2.6.1-1_all.deb ...
116s Unpacking r-cran-r6 (2.6.1-1) ...
116s Selecting previously unselected package r-cran-fansi.
116s Preparing to unpack .../63-r-cran-fansi_1.0.5-1_s390x.deb ...
116s Unpacking r-cran-fansi (1.0.5-1) ...
116s Selecting previously unselected package r-cran-pkgconfig.
116s Preparing to unpack .../64-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
116s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
117s Selecting previously unselected package r-cran-tibble.
117s Preparing to unpack .../65-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ...
117s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
117s Selecting previously unselected package r-cran-withr.
117s Preparing to unpack .../66-r-cran-withr_3.0.2+dfsg-1_all.deb ...
117s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
117s Selecting previously unselected package r-cran-tidyselect.
117s Preparing to unpack .../67-r-cran-tidyselect_1.2.1+dfsg-1_s390x.deb ...
117s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
117s Selecting previously unselected package r-cran-dplyr.
117s Preparing to unpack .../68-r-cran-dplyr_1.1.4-4_s390x.deb ...
117s Unpacking r-cran-dplyr (1.1.4-4) ...
117s Selecting previously unselected package r-cran-pkgkitten.
117s Preparing to unpack .../69-r-cran-pkgkitten_0.2.4-1_all.deb ...
117s Unpacking r-cran-pkgkitten (0.2.4-1) ...
117s Selecting previously unselected package r-cran-rcpp.
117s Preparing to unpack .../70-r-cran-rcpp_1.0.14-1_s390x.deb ...
117s Unpacking r-cran-rcpp (1.0.14-1) ...
117s Selecting previously unselected package r-cran-rcpparmadillo.
117s Preparing to unpack .../71-r-cran-rcpparmadillo_14.2.3-1-1_s390x.deb ...
117s Unpacking r-cran-rcpparmadillo (14.2.3-1-1) ...
117s Selecting previously unselected package r-cran-etm.
117s Preparing to unpack .../72-r-cran-etm_1.1.1-1_s390x.deb ...
117s Unpacking r-cran-etm (1.1.1-1) ...
117s Selecting previously unselected package r-cran-mass.
117s Preparing to unpack .../73-r-cran-mass_7.3-64-1_s390x.deb ...
117s Unpacking r-cran-mass (7.3-64-1) ...
117s Selecting previously unselected package r-cran-plyr.
117s Preparing to unpack .../74-r-cran-plyr_1.8.9-1_s390x.deb ...
117s Unpacking r-cran-plyr (1.8.9-1) ...
117s Selecting previously unselected package r-cran-numderiv.
117s Preparing to unpack .../75-r-cran-numderiv_2016.8-1.1-3_all.deb ...
117s Unpacking r-cran-numderiv (2016.8-1.1-3) ...
117s Selecting previously unselected package r-cran-zoo.
117s Preparing to unpack .../76-r-cran-zoo_1.8-13-1_s390x.deb ...
117s Unpacking r-cran-zoo (1.8-13-1) ...
117s Selecting previously unselected package r-cran-nlme.
117s Preparing to unpack .../77-r-cran-nlme_3.1.167-1_s390x.deb ...
117s Unpacking r-cran-nlme (3.1.167-1) ...
117s Selecting previously unselected package r-cran-mgcv.
117s Preparing to unpack .../78-r-cran-mgcv_1.9-1-1_s390x.deb ...
117s Unpacking r-cran-mgcv (1.9-1-1) ...
117s Selecting previously unselected package r-cran-epi.
117s Preparing to unpack .../79-r-cran-epi_2.59-1_s390x.deb ...
117s Unpacking r-cran-epi (2.59-1) ...
117s Selecting previously unselected package r-cran-minqa.
117s Preparing to unpack .../80-r-cran-minqa_1.2.8-1_s390x.deb ...
117s Unpacking r-cran-minqa (1.2.8-1) ...
117s Selecting previously unselected package libnlopt0:s390x.
117s Preparing to unpack .../81-libnlopt0_2.7.1-6ubuntu3_s390x.deb ...
117s Unpacking libnlopt0:s390x (2.7.1-6ubuntu3) ...
117s Selecting previously unselected package r-cran-nloptr.
117s Preparing to unpack .../82-r-cran-nloptr_2.1.1-1_s390x.deb ...
117s Unpacking r-cran-nloptr (2.1.1-1) ...
117s Selecting previously unselected package r-cran-rbibutils.
117s Preparing to unpack .../83-r-cran-rbibutils_2.3-1_s390x.deb ...
117s Unpacking r-cran-rbibutils (2.3-1) ...
117s Selecting previously unselected package r-cran-rdpack.
117s Preparing to unpack .../84-r-cran-rdpack_2.6.2-1syncable1_all.deb ...
117s Unpacking r-cran-rdpack (2.6.2-1syncable1) ...
117s Selecting previously unselected package r-cran-reformulas.
117s Preparing to unpack .../85-r-cran-reformulas_0.4.0-1_all.deb ...
117s Unpacking r-cran-reformulas (0.4.0-1) ...
117s Selecting previously unselected package r-cran-rcppeigen.
117s Preparing to unpack .../86-r-cran-rcppeigen_0.3.4.0.2-1_s390x.deb ...
117s Unpacking r-cran-rcppeigen (0.3.4.0.2-1) ...
117s Selecting previously unselected package r-cran-statmod.
117s Preparing to unpack .../87-r-cran-statmod_1.5.0-1_s390x.deb ...
117s Unpacking r-cran-statmod (1.5.0-1) ...
117s Selecting previously unselected package r-cran-lme4.
117s Preparing to unpack .../88-r-cran-lme4_1.1-36-1_s390x.deb ...
117s Unpacking r-cran-lme4 (1.1-36-1) ...
117s Selecting previously unselected package r-cran-popepi.
117s Preparing to unpack .../89-r-cran-popepi_0.4.13+dfsg-1_all.deb ...
117s Unpacking r-cran-popepi (0.4.13+dfsg-1) ...
117s Selecting previously unselected package r-cran-purrr.
117s Preparing to unpack .../90-r-cran-purrr_1.0.4-1_s390x.deb ...
117s Unpacking r-cran-purrr (1.0.4-1) ...
117s Selecting previously unselected package r-cran-stringi.
117s Preparing to unpack .../91-r-cran-stringi_1.8.4-1build1_s390x.deb ...
117s Unpacking r-cran-stringi (1.8.4-1build1) ...
117s Selecting previously unselected package r-cran-stringr.
117s Preparing to unpack .../92-r-cran-stringr_1.5.1-1_all.deb ...
117s Unpacking r-cran-stringr (1.5.1-1) ...
117s Selecting previously unselected package r-cran-tidyr.
117s Preparing to unpack .../93-r-cran-tidyr_1.3.1-1_s390x.deb ...
117s Unpacking r-cran-tidyr (1.3.1-1) ...
117s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
117s Setting up libpixman-1-0:s390x (0.44.0-3) ...
117s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
117s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
117s Setting up libdatrie1:s390x (0.2.13-3build1) ...
117s Setting up libxcb-render0:s390x (1.17.0-2) ...
117s Setting up unzip (6.0-28ubuntu6) ...
117s Setting up x11-common (1:7.7+23ubuntu3) ...
117s Setting up libdeflate0:s390x (1.23-1) ...
117s Setting up libnlopt0:s390x (2.7.1-6ubuntu3) ...
117s Setting up libxcb-shm0:s390x (1.17.0-2) ...
117s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
117s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
117s Setting up zip (3.0-14ubuntu2) ...
117s Setting up libblas3:s390x (3.12.1-2) ...
117s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
117s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
117s Setting up fonts-dejavu-mono (2.37-8) ...
117s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
117s Setting up fonts-dejavu-core (2.37-8) ...
117s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
117s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
117s Setting up libwebp7:s390x (1.5.0-0.1) ...
117s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
117s Setting up libthai-data (0.1.29-2build1) ...
117s Setting up libxss1:s390x (1:1.2.3-1build3) ...
117s Setting up libpaper2:s390x (2.2.5-0.3) ...
118s Setting up xdg-utils (1.2.1-2ubuntu1) ...
118s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
118s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
118s Setting up libice6:s390x (2:1.1.1-1) ...
118s Setting up liblapack3:s390x (3.12.1-2) ...
118s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
118s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
118s Setting up libpaper-utils (2.2.5-0.3) ...
118s Setting up libthai0:s390x (0.1.29-2build1) ...
118s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
118s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
118s Setting up libsm6:s390x (2:1.2.4-1) ...
118s Setting up fontconfig (2.15.0-2ubuntu1) ...
120s Regenerating fonts cache... done.
120s Setting up libxft2:s390x (2.3.6-1build1) ...
120s Setting up libtk8.6:s390x (8.6.16-1) ...
120s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
120s Setting up libcairo2:s390x (1.18.2-2) ...
120s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
120s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
120s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
120s Setting up r-base-core (4.4.3-1) ...
120s Creating config file /etc/R/Renviron with new version
120s Setting up r-cran-lattice (0.22-6-1) ...
120s Setting up r-cran-nlme (3.1.167-1) ...
120s Setting up r-cran-statmod (1.5.0-1) ...
120s Setting up r-cran-r6 (2.6.1-1) ...
120s Setting up r-cran-pkgkitten (0.2.4-1) ...
120s Setting up r-cran-numderiv (2016.8-1.1-3) ...
120s Setting up r-cran-magrittr (2.0.3-1) ...
120s Setting up r-cran-littler (0.3.20-2) ...
120s Setting up r-cran-rcpp (1.0.14-1) ...
120s Setting up r-cran-nloptr (2.1.1-1) ...
120s Setting up r-cran-boot (1.3-31-1) ...
120s Setting up r-cran-rlang (1.1.5-1) ...
120s Setting up littler (0.3.20-2) ...
120s Setting up r-cran-withr (3.0.2+dfsg-1) ...
120s Setting up r-cran-generics (0.1.3-1) ...
120s Setting up r-cran-fansi (1.0.5-1) ...
120s Setting up r-cran-mass (7.3-64-1) ...
120s Setting up r-cran-data.table (1.17.0+dfsg-1) ...
120s Setting up r-cran-glue (1.8.0-1) ...
120s Setting up r-cran-cli (3.6.4-1) ...
120s Setting up r-cran-rbibutils (2.3-1) ...
120s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
120s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
120s Setting up r-cran-utf8 (1.2.4-1) ...
120s Setting up r-cran-stringi (1.8.4-1build1) ...
120s Setting up r-cran-cpp11 (0.5.2-1) ...
120s Setting up r-cran-plyr (1.8.9-1) ...
120s Setting up r-cran-zoo (1.8-13-1) ...
120s Setting up r-cran-matrix (1.7-3-1) ...
120s Setting up r-cran-mgcv (1.9-1-1) ...
120s Setting up r-cran-rcpparmadillo (14.2.3-1-1) ...
120s Setting up r-cran-vctrs (0.6.5-1) ...
120s Setting up r-cran-rcppeigen (0.3.4.0.2-1) ...
120s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
120s Setting up r-cran-minqa (1.2.8-1) ...
120s Setting up r-cran-stringr (1.5.1-1) ...
120s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
120s Setting up r-cran-survival (3.8-3-1) ...
120s Setting up r-cran-rdpack (2.6.2-1syncable1) ...
120s Setting up r-cran-cmprsk (2.2-12-1) ...
120s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
120s Setting up r-cran-purrr (1.0.4-1) ...
120s Setting up r-cran-dplyr (1.1.4-4) ...
120s Setting up r-cran-reformulas (0.4.0-1) ...
120s Setting up r-cran-etm (1.1.1-1) ...
120s Setting up r-cran-lme4 (1.1-36-1) ...
120s Setting up r-cran-tidyr (1.3.1-1) ...
120s Setting up r-cran-epi (2.59-1) ...
120s Setting up r-cran-popepi (0.4.13+dfsg-1) ...
120s Processing triggers for libc-bin (2.41-1ubuntu2) ...
120s Processing triggers for man-db (2.13.0-1) ...
121s Processing triggers for install-info (7.1.1-1) ...
122s autopkgtest [18:01:02]: test vignette: [-----------------------
122s BEGIN VIGNETTE vignettes/aaflup.rnw
124s 
124s Attaching package: ‘survival’
124s 
124s The following object is masked from ‘package:popEpi’:
124s 
124s     Surv
124s 
161s Output file:  aaflup.tex
161s BEGIN VIGNETTE vignettes/simLexis.rnw
162s 
162s Attaching package: ‘survival’
162s 
162s The following object is masked from ‘package:popEpi’:
162s 
162s     Surv
162s 
184s Output file:  simLexis.tex
184s BEGIN VIGNETTE vignettes/yll.rnw
185s 
185s Attaching package: ‘survival’
185s 
185s The following object is masked from ‘package:popEpi’:
185s 
185s     Surv
185s 
199s Output file:  yll.tex
199s BEGIN VIGNETTE vignettes/addLexis.rnw
201s 
201s Attaching package: ‘dplyr’
201s 
201s The following objects are masked from ‘package:stats’:
201s 
201s     filter, lag
201s 
201s The following objects are masked from ‘package:base’:
201s 
201s     intersect, setdiff, setequal, union
201s 
203s Joining with `by = join_by(lex.id)`
203s Joining with `by = join_by(lex.id)`
203s Joining with `by = join_by(lex.id)`
225s Output file:  addLexis.tex
225s BEGIN VIGNETTE vignettes/crisk.rnw
226s 
226s Attaching package: ‘survival’
226s 
226s The following object is masked from ‘package:popEpi’:
226s 
226s     Surv
226s 
308s Output file:  crisk.tex
309s autopkgtest [18:04:09]: test vignette: -----------------------]
309s autopkgtest [18:04:09]: test vignette:  - - - - - - - - - - results - - - - - - - - - -
309s vignette             PASS
309s autopkgtest [18:04:09]: test pkg-r-autopkgtest: preparing testbed
310s Reading package lists...
310s Building dependency tree...
310s Reading state information...
310s Starting pkgProblemResolver with broken count: 0
310s Starting 2 pkgProblemResolver with broken count: 0
310s Done
310s The following NEW packages will be installed:
310s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
310s   dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
310s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
310s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
310s   libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev
310s   libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev
310s   libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3
310s   libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
310s   libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev
310s   libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev
310s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded.
310s Need to get 82.3 MB of archives.
310s After this operation, 279 MB of additional disk space will be used.
310s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
311s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
312s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
322s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
322s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
322s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
322s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
322s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
322s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
325s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
326s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
327s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
342s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
342s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
342s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
342s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
345s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
354s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
354s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
354s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
354s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
354s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
354s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
355s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
365s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
365s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
365s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
365s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
365s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
365s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
365s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
366s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
378s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
378s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
378s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
378s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
384s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
385s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
385s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
385s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
385s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
386s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
386s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
387s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
387s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
387s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
387s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
387s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
387s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
388s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
388s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
388s Fetched 82.3 MB in 1min 17s (1064 kB/s)
388s Selecting previously unselected package libisl23:s390x.
388s (Reading database ... 
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(Reading database ... 64875 files and directories currently installed.)
388s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ...
388s Unpacking libisl23:s390x (0.27-1) ...
388s Selecting previously unselected package libmpc3:s390x.
388s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ...
388s Unpacking libmpc3:s390x (1.3.1-1build2) ...
388s Selecting previously unselected package cpp-14-s390x-linux-gnu.
388s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
388s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
388s Selecting previously unselected package cpp-14.
388s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
388s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
388s Selecting previously unselected package cpp-s390x-linux-gnu.
388s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
388s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
388s Selecting previously unselected package cpp.
388s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
388s Unpacking cpp (4:14.2.0-1ubuntu1) ...
388s Selecting previously unselected package libcc1-0:s390x.
388s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
388s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
388s Selecting previously unselected package libitm1:s390x.
388s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_s390x.deb ...
388s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
388s Selecting previously unselected package libasan8:s390x.
388s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_s390x.deb ...
388s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
388s Selecting previously unselected package libubsan1:s390x.
388s Preparing to unpack .../09-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
388s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
388s Selecting previously unselected package libgcc-14-dev:s390x.
388s Preparing to unpack .../10-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
388s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
388s Selecting previously unselected package gcc-14-s390x-linux-gnu.
388s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
388s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package gcc-14.
389s Preparing to unpack .../12-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package gcc-s390x-linux-gnu.
389s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
389s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
389s Selecting previously unselected package gcc.
389s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
389s Unpacking gcc (4:14.2.0-1ubuntu1) ...
389s Selecting previously unselected package libstdc++-14-dev:s390x.
389s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package g++-14-s390x-linux-gnu.
389s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package g++-14.
389s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking g++-14 (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package g++-s390x-linux-gnu.
389s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
389s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
389s Selecting previously unselected package g++.
389s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
389s Unpacking g++ (4:14.2.0-1ubuntu1) ...
389s Selecting previously unselected package build-essential.
389s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ...
389s Unpacking build-essential (12.10ubuntu1) ...
389s Selecting previously unselected package dctrl-tools.
389s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ...
389s Unpacking dctrl-tools (2.24-3build3) ...
389s Selecting previously unselected package libgfortran-14-dev:s390x.
389s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
389s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package gfortran-14.
389s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
389s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
389s Selecting previously unselected package gfortran-s390x-linux-gnu.
389s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
389s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
389s Selecting previously unselected package gfortran.
389s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
389s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
389s Selecting previously unselected package icu-devtools.
389s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ...
389s Unpacking icu-devtools (76.1-1ubuntu2) ...
389s Selecting previously unselected package libblas-dev:s390x.
389s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ...
389s Unpacking libblas-dev:s390x (3.12.1-2) ...
389s Selecting previously unselected package libbz2-dev:s390x.
389s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ...
389s Unpacking libbz2-dev:s390x (1.0.8-6) ...
389s Selecting previously unselected package libdeflate-dev:s390x.
389s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ...
389s Unpacking libdeflate-dev:s390x (1.23-1) ...
389s Selecting previously unselected package libicu-dev:s390x.
389s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ...
389s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
389s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
389s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
389s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
389s Selecting previously unselected package libjpeg8-dev:s390x.
389s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
389s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
389s Selecting previously unselected package libjpeg-dev:s390x.
389s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
389s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
389s Selecting previously unselected package liblapack-dev:s390x.
389s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ...
389s Unpacking liblapack-dev:s390x (3.12.1-2) ...
390s Selecting previously unselected package libncurses-dev:s390x.
390s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ...
390s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
390s Selecting previously unselected package libpcre2-16-0:s390x.
390s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ...
390s Unpacking libpcre2-16-0:s390x (10.45-1) ...
390s Selecting previously unselected package libpcre2-32-0:s390x.
390s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ...
390s Unpacking libpcre2-32-0:s390x (10.45-1) ...
390s Selecting previously unselected package libpcre2-posix3:s390x.
390s Preparing to unpack .../39-libpcre2-posix3_10.45-1_s390x.deb ...
390s Unpacking libpcre2-posix3:s390x (10.45-1) ...
390s Selecting previously unselected package libpcre2-dev:s390x.
390s Preparing to unpack .../40-libpcre2-dev_10.45-1_s390x.deb ...
390s Unpacking libpcre2-dev:s390x (10.45-1) ...
390s Selecting previously unselected package libpkgconf3:s390x.
390s Preparing to unpack .../41-libpkgconf3_1.8.1-4_s390x.deb ...
390s Unpacking libpkgconf3:s390x (1.8.1-4) ...
390s Selecting previously unselected package zlib1g-dev:s390x.
390s Preparing to unpack .../42-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
390s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
390s Selecting previously unselected package libpng-dev:s390x.
390s Preparing to unpack .../43-libpng-dev_1.6.47-1_s390x.deb ...
390s Unpacking libpng-dev:s390x (1.6.47-1) ...
390s Selecting previously unselected package libreadline-dev:s390x.
390s Preparing to unpack .../44-libreadline-dev_8.2-6_s390x.deb ...
390s Unpacking libreadline-dev:s390x (8.2-6) ...
390s Selecting previously unselected package liblzma-dev:s390x.
390s Preparing to unpack .../45-liblzma-dev_5.6.4-1_s390x.deb ...
390s Unpacking liblzma-dev:s390x (5.6.4-1) ...
390s Selecting previously unselected package pkgconf-bin.
390s Preparing to unpack .../46-pkgconf-bin_1.8.1-4_s390x.deb ...
390s Unpacking pkgconf-bin (1.8.1-4) ...
390s Selecting previously unselected package pkgconf:s390x.
390s Preparing to unpack .../47-pkgconf_1.8.1-4_s390x.deb ...
390s Unpacking pkgconf:s390x (1.8.1-4) ...
390s Selecting previously unselected package libtirpc-dev:s390x.
390s Preparing to unpack .../48-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
390s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
390s Selecting previously unselected package r-base-dev.
390s Preparing to unpack .../49-r-base-dev_4.4.3-1_all.deb ...
390s Unpacking r-base-dev (4.4.3-1) ...
390s Selecting previously unselected package pkg-r-autopkgtest.
390s Preparing to unpack .../50-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
390s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
390s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
390s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
390s Setting up libreadline-dev:s390x (8.2-6) ...
390s Setting up libpcre2-16-0:s390x (10.45-1) ...
390s Setting up libpcre2-32-0:s390x (10.45-1) ...
390s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
390s Setting up libpkgconf3:s390x (1.8.1-4) ...
390s Setting up libmpc3:s390x (1.3.1-1build2) ...
390s Setting up icu-devtools (76.1-1ubuntu2) ...
390s Setting up pkgconf-bin (1.8.1-4) ...
390s Setting up liblzma-dev:s390x (5.6.4-1) ...
390s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
390s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
390s Setting up libpcre2-posix3:s390x (10.45-1) ...
390s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
390s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
390s Setting up libisl23:s390x (0.27-1) ...
390s Setting up libdeflate-dev:s390x (1.23-1) ...
390s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
390s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
390s Setting up libblas-dev:s390x (3.12.1-2) ...
390s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
390s Setting up dctrl-tools (2.24-3build3) ...
390s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
390s Setting up libbz2-dev:s390x (1.0.8-6) ...
390s Setting up libpcre2-dev:s390x (10.45-1) ...
390s Setting up libpng-dev:s390x (1.6.47-1) ...
390s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
390s Setting up pkgconf:s390x (1.8.1-4) ...
390s Setting up liblapack-dev:s390x (3.12.1-2) ...
390s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
390s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
390s Setting up cpp-14 (14.2.0-17ubuntu3) ...
390s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
390s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
390s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
390s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
390s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
390s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
390s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
390s Setting up cpp (4:14.2.0-1ubuntu1) ...
390s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
390s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
390s Setting up gcc-14 (14.2.0-17ubuntu3) ...
390s Setting up g++-14 (14.2.0-17ubuntu3) ...
390s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
390s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
390s Setting up gcc (4:14.2.0-1ubuntu1) ...
390s Setting up g++ (4:14.2.0-1ubuntu1) ...
390s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
390s Setting up build-essential (12.10ubuntu1) ...
390s Setting up gfortran (4:14.2.0-1ubuntu1) ...
390s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
390s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
390s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
390s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
390s Setting up r-base-dev (4.4.3-1) ...
390s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
390s Processing triggers for libc-bin (2.41-1ubuntu2) ...
390s Processing triggers for man-db (2.13.0-1) ...
391s Processing triggers for install-info (7.1.1-1) ...
392s autopkgtest [18:05:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
392s autopkgtest [18:05:32]: test pkg-r-autopkgtest: [-----------------------
392s Test: Try to load the R library Epi
392s 
392s R version 4.4.3 (2025-02-28) -- "Trophy Case"
392s Copyright (C) 2025 The R Foundation for Statistical Computing
392s Platform: s390x-ibm-linux-gnu
392s 
392s R is free software and comes with ABSOLUTELY NO WARRANTY.
392s You are welcome to redistribute it under certain conditions.
392s Type 'license()' or 'licence()' for distribution details.
392s 
392s R is a collaborative project with many contributors.
392s Type 'contributors()' for more information and
392s 'citation()' on how to cite R or R packages in publications.
392s 
392s Type 'demo()' for some demos, 'help()' for on-line help, or
392s 'help.start()' for an HTML browser interface to help.
392s Type 'q()' to quit R.
392s 
392s > library('Epi')
393s > 
393s > 
393s Other tests are currently unsupported!
393s They will be progressively added.
394s autopkgtest [18:05:34]: test pkg-r-autopkgtest: -----------------------]
394s pkg-r-autopkgtest    PASS
394s autopkgtest [18:05:34]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
395s autopkgtest [18:05:35]: @@@@@@@@@@@@@@@@@@@@ summary
395s vignette             PASS
395s pkg-r-autopkgtest    PASS
412s nova [W] Using flock in prodstack6-s390x
412s Creating nova instance adt-plucky-s390x-r-cran-epi-20250315-175900-juju-7f2275-prod-proposed-migration-environment-2-fc71bfef-b9c6-48b4-ac72-a5e14c848cdf from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
412s nova [W] Timed out waiting for a94b84eb-0729-4e52-8651-e318dec4eb92 to get deleted.