0s autopkgtest [17:55:51]: starting date and time: 2025-03-15 17:55:51+0000 0s autopkgtest [17:55:51]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:55:51]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.htemgmwl/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-circular --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-3.secgroup --name adt-plucky-s390x-r-cran-circular-20250315-175551-juju-7f2275-prod-proposed-migration-environment-2-17fb87a8-e8cb-45db-983b-da07e1b03894 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 83s autopkgtest [17:57:14]: testbed dpkg architecture: s390x 83s autopkgtest [17:57:14]: testbed apt version: 2.9.33 84s autopkgtest [17:57:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 84s autopkgtest [17:57:15]: testbed release detected to be: None 85s autopkgtest [17:57:16]: updating testbed package index (apt update) 85s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 85s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 85s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 85s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 86s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 86s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 86s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 86s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 86s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 86s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 86s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 86s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 86s Fetched 1073 kB in 1s (733 kB/s) 87s Reading package lists... 88s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Calculating upgrade... 88s Calculating upgrade... 88s The following packages were automatically installed and are no longer required: 88s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 88s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 88s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 88s linux-tools-6.11.0-8-generic 88s Use 'sudo apt autoremove' to remove them. 88s The following packages will be upgraded: 88s pinentry-curses python3-jinja2 strace 88s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 88s Need to get 652 kB of archives. 88s After this operation, 27.6 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 89s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 89s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 89s Fetched 652 kB in 1s (642 kB/s) 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 90s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 90s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 90s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 90s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 90s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 90s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 90s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 90s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 90s Setting up strace (6.13+ds-1ubuntu1) ... 90s Processing triggers for man-db (2.13.0-1) ... 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s Solving dependencies... 91s The following packages will be REMOVED: 91s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 91s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 91s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 91s linux-tools-6.11.0-8-generic* 91s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 91s After this operation, 167 MB disk space will be freed. 91s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 91s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 91s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 91s Removing libpython3.12t64:s390x (3.12.9-1) ... 91s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 91s Removing libnsl2:s390x (1.3.0-3build3) ... 91s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 91s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 91s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 92s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 92s Processing triggers for libc-bin (2.41-1ubuntu1) ... 92s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 92s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 92s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 92s autopkgtest [17:57:23]: upgrading testbed (apt dist-upgrade and autopurge) 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 93s Starting 2 pkgProblemResolver with broken count: 0 93s Done 93s Entering ResolveByKeep 93s 94s Calculating upgrade... 94s The following packages will be upgraded: 94s libc-bin libc-dev-bin libc6 libc6-dev locales 94s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Need to get 9512 kB of archives. 94s After this operation, 8192 B of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 95s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 96s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 98s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 99s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 103s Preconfiguring packages ... 103s Fetched 9512 kB in 9s (1067 kB/s) 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 103s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 103s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 103s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 103s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Setting up libc6:s390x (2.41-1ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 103s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 103s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Setting up libc-bin (2.41-1ubuntu2) ... 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 103s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 103s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 103s Setting up locales (2.41-1ubuntu2) ... 104s Generating locales (this might take a while)... 105s en_US.UTF-8... done 105s Generation complete. 105s Setting up libc-dev-bin (2.41-1ubuntu2) ... 105s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 105s Processing triggers for man-db (2.13.0-1) ... 106s Processing triggers for systemd (257.3-1ubuntu3) ... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s Starting pkgProblemResolver with broken count: 0 107s Starting 2 pkgProblemResolver with broken count: 0 107s Done 107s Solving dependencies... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s autopkgtest [17:57:38]: rebooting testbed after setup commands that affected boot 126s autopkgtest [17:57:57]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 128s autopkgtest [17:57:59]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-circular 130s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-circular 0.5-1-1 (dsc) [2110 B] 130s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-circular 0.5-1-1 (tar) [184 kB] 130s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-circular 0.5-1-1 (diff) [3396 B] 130s gpgv: Signature made Wed Jan 29 00:29:05 2025 UTC 130s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 130s gpgv: issuer "plessy@debian.org" 130s gpgv: Can't check signature: No public key 130s dpkg-source: warning: cannot verify inline signature for ./r-cran-circular_0.5-1-1.dsc: no acceptable signature found 130s autopkgtest [17:58:01]: testing package r-cran-circular version 0.5-1-1 130s autopkgtest [17:58:01]: build not needed 132s autopkgtest [17:58:03]: test run-unit-test: preparing testbed 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 133s Starting pkgProblemResolver with broken count: 0 133s Starting 2 pkgProblemResolver with broken count: 0 133s Done 133s The following NEW packages will be installed: 133s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 133s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 133s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 133s libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 133s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 133s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 133s libxft2 libxrender1 libxss1 libxt6t64 r-base-core r-cran-boot 133s r-cran-circular r-cran-mvtnorm unzip x11-common xdg-utils zip 133s 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. 133s Need to get 42.5 MB of archives. 133s After this operation, 84.2 MB of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 134s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 134s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 135s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 135s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 135s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 135s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 135s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 136s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 136s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 136s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 136s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 136s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 136s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 136s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 137s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 137s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 137s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 138s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 138s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 138s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 138s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 138s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 140s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 141s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 141s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 141s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 141s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 141s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 141s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 141s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 141s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 141s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 142s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 142s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 142s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 142s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 142s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 142s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 143s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 143s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 144s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 144s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 144s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 169s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-boot all 1.3-31-1 [635 kB] 170s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mvtnorm s390x 1.3-3-1 [924 kB] 171s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-circular s390x 0.5-1-1 [827 kB] 172s Preconfiguring packages ... 172s Fetched 42.5 MB in 38s (1104 kB/s) 172s Selecting previously unselected package libfreetype6:s390x. 172s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 172s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 172s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 172s Selecting previously unselected package fonts-dejavu-mono. 172s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 172s Unpacking fonts-dejavu-mono (2.37-8) ... 172s Selecting previously unselected package fonts-dejavu-core. 172s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 172s Unpacking fonts-dejavu-core (2.37-8) ... 172s Selecting previously unselected package fontconfig-config. 172s Preparing to unpack .../03-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 172s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 172s Selecting previously unselected package libfontconfig1:s390x. 172s Preparing to unpack .../04-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 172s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 172s Selecting previously unselected package fontconfig. 172s Preparing to unpack .../05-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 172s Unpacking fontconfig (2.15.0-2ubuntu1) ... 172s Selecting previously unselected package libblas3:s390x. 172s Preparing to unpack .../06-libblas3_3.12.1-2_s390x.deb ... 172s Unpacking libblas3:s390x (3.12.1-2) ... 172s Selecting previously unselected package libpixman-1-0:s390x. 172s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_s390x.deb ... 172s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 172s Selecting previously unselected package libxcb-render0:s390x. 172s Preparing to unpack .../08-libxcb-render0_1.17.0-2_s390x.deb ... 172s Unpacking libxcb-render0:s390x (1.17.0-2) ... 172s Selecting previously unselected package libxcb-shm0:s390x. 172s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_s390x.deb ... 172s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 172s Selecting previously unselected package libxrender1:s390x. 172s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 172s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 172s Selecting previously unselected package libcairo2:s390x. 172s Preparing to unpack .../11-libcairo2_1.18.2-2_s390x.deb ... 172s Unpacking libcairo2:s390x (1.18.2-2) ... 172s Selecting previously unselected package libdatrie1:s390x. 172s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_s390x.deb ... 172s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 172s Selecting previously unselected 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... 176s Setting up r-cran-mvtnorm (1.3-3-1) ... 176s Setting up r-cran-circular (0.5-1-1) ... 176s Processing triggers for libc-bin (2.41-1ubuntu2) ... 176s Processing triggers for man-db (2.13.0-1) ... 177s Processing triggers for install-info (7.1.1-1) ... 177s autopkgtest [17:58:48]: test run-unit-test: [----------------------- 178s BEGIN TEST test-median.R 178s 178s R version 4.4.3 (2025-02-28) -- "Trophy Case" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: s390x-ibm-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > suppressMessages(library("circular")) 178s > # ?median.circular 178s > 178s > 178s > med <- median.circular(circular(c(0, pi/2, pi, 3/2*pi))) 178s > 178s > ## expect: 178s > ## median is equal to NA 178s > stopifnot( 178s + is.na(med) 178s + ) 178s > 178s > ## expect: 178s > ## all the points are minimizers of the function 178s > stopifnot( 178s + all.equal(attr(med, "medians"), c(0, pi/2, pi, 3/2*pi), tol = 2e-7) 178s + ) 178s > 178s > 178s BEGIN TEST test-walraff.test.R 178s 178s R version 4.4.3 (2025-02-28) -- "Trophy Case" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: s390x-ibm-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > # Test data from: 178s > # Batschelet, E (1981). Circular Statistics in Biology. 178s > # Examples 6.10.1 and 6.10.2, p 126 178s > # 178s > 178s > suppressMessages(library("circular")) 178s > # ?wallraff.test 178s > 178s > angles <- circular(c(70, 80, 80, 85, 85, 90, 95, 95, 5, 5, 15, 55, 55, 65, 105, 120, 340), units="degrees", template="geographics") 178s > group <- factor(c(rep("control", 8), rep("experimental", 9))) 178s > 178s > homeDir <- 40 178s > 178s > # expect: 178s > # W = 2 (in wilcox.test) and p < 0.01 for the dispersion test 178s > # W = 26 (in wilcox.test) and p > 0.05 for the homing test 178s > 178s > xn <- angles 178s > wallraff.test(xn, group) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: xn by group 178s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 178s 178s > 178s > wallraff.test(xn, group, ref=homeDir) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: xn by group 178s Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 178s 178s > wallraff.test(xn, as.factor(group), ref=homeDir) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: xn by as.factor(group) 178s Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 178s 178s > 178s > 178s > xl <- split(xn, group) 178s > wallraff.test(xl, ref=homeDir) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: control and experimental 178s Kruskal-Wallis chi-squared = 0.93278, df = 1, p-value = 0.3341 178s 178s > wallraff.test(xl) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: control and experimental 178s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 178s 178s > 178s > xl <- split(xn, group) 178s > names(xl) <- NULL 178s > wallraff.test(xl) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: 1 and 2 178s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 178s 178s > 178s > xd <- data.frame(group=group, angles=angles) 178s > wallraff.test(angles ~ group, xd) 178s 178s Wallraff rank sum test of angular distance 178s 178s data: angles by group 178s Kruskal-Wallis chi-squared = 10.77, df = 1, p-value = 0.001032 178s 178s > 178s BEGIN TEST test-watson.williams.test.R 178s 178s R version 4.4.3 (2025-02-28) -- "Trophy Case" 178s Copyright (C) 2025 The R Foundation for Statistical Computing 178s Platform: s390x-ibm-linux-gnu 178s 178s R is free software and comes with ABSOLUTELY NO WARRANTY. 178s You are welcome to redistribute it under certain conditions. 178s Type 'license()' or 'licence()' for distribution details. 178s 178s R is a collaborative project with many contributors. 178s Type 'contributors()' for more information and 178s 'citation()' on how to cite R or R packages in publications. 178s 178s Type 'demo()' for some demos, 'help()' for on-line help, or 178s 'help.start()' for an HTML browser interface to help. 178s Type 'q()' to quit R. 178s 178s > # Test data from: 178s > # Circular statistics in biology, Batschelet, E (1981) 178s > # §6.2, p99 178s > # 178s > 178s > suppressMessages(library("circular")) 178s > # ?watson.williams.test 178s > 178s > angles <- circular( c(rep(c(-20, -10, 0), c(1,7,2)), rep(c(-10, 0, 10, 20), c(3,3,3,1))), units="degrees", template="geographics") 178s > group <- factor(rep(c("exp", "control"), each=10)) 178s > 178s > # expect this: 178s > # F = 8.7329, df1 = 1, df2 = 18, p-value = 0.003108 178s > # mean of control mean of exp 178s > # 1.988969 -9.000615 178s > 178s > # Test interfaces 178s > xn <- angles 178s > watson.williams.test(xn, group) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: xn by group 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of control mean of exp 178s 1.988969 -9.000615 178s 178s > 178s > xl <- split(xn, group) 178s > watson.williams.test(xl) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: control and exp 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of control mean of exp 178s 1.988969 -9.000615 178s 178s > 178s > xl <- split(xn, group) 178s > names(xl) <- NULL 178s > watson.williams.test(xl) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: 1 and 2 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of 1 mean of 2 178s 1.988969 -9.000615 178s 178s > 178s > xd <- data.frame(group=group, angles=angles) 178s > watson.williams.test(angles ~ group, xd) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: angles by group 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of control mean of exp 178s 1.988969 -9.000615 178s 178s > 178s > # Test the influence of ordering the groups 178s > id <- c(9, 8, 7, 4, 6, 5, 12, 18, 10, 17, 1, 19, 3, 20, 2, 16, 15, 14, 13, 11) 178s > angles <- angles[id] 178s > group <- group[id] 178s > 178s > xn <- angles 178s > watson.williams.test(xn, group) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: xn by group 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of control mean of exp 178s 1.988969 -9.000615 178s 178s > xl <- split(xn, group) 178s > watson.williams.test(xl) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: control and exp 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of control mean of exp 178s 1.988969 -9.000615 178s 178s > xd <- data.frame(group=group, angles=angles) 178s > watson.williams.test(angles ~ group, xd) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: angles by group 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of control mean of exp 178s 1.988969 -9.000615 178s 178s > 178s > # Test NAs 178s > angles[length(angles)+1] <- NA 178s > levels(group) <- c("exp", "control", "bar") 178s > group[length(group)+1] <- "bar" 178s > xn <- angles 178s > watson.williams.test(xn, group) 178s 178s Watson-Williams test for homogeneity of means 178s 178s data: xn by group 178s F = 8.7329, df1 = 1, df2 = 18, p-value = 0.008472 178s sample estimates: 178s Circular Data: 178s Type = angles 178s Units = degrees 178s Template = geographics 178s Modulo = asis 178s Zero = 1.570796 178s Rotation = clock 178s mean of exp mean of control 178s 1.988969 -9.000615 178s 178s > 179s autopkgtest [17:58:50]: test run-unit-test: -----------------------] 179s autopkgtest [17:58:50]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 179s run-unit-test PASS 179s autopkgtest [17:58:50]: test pkg-r-autopkgtest: preparing testbed 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 0 180s Starting 2 pkgProblemResolver with broken count: 0 180s Done 180s The following NEW packages will be installed: 180s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 180s dctrl-tools g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 180s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 180s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 180s libblas-dev libbz2-dev libcc1-0 libdeflate-dev libgcc-14-dev 180s libgfortran-14-dev libicu-dev libisl23 libitm1 libjpeg-dev 180s libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblzma-dev libmpc3 180s libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 180s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev libtirpc-dev 180s libubsan1 pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev zlib1g-dev 180s 0 upgraded, 51 newly installed, 0 to remove and 0 not upgraded. 180s Need to get 82.3 MB of archives. 180s After this operation, 279 MB of additional disk space will be used. 180s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 181s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 181s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 188s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 188s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 188s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 188s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 188s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 188s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 190s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 191s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 192s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 204s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 204s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 204s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 204s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 206s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 214s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 214s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 214s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 214s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 214s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 214s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 214s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 221s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 221s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 221s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 221s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 222s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 222s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 222s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 222s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 231s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 231s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 231s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 231s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 236s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 236s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 236s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 236s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 236s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 237s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 237s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 238s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 238s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 238s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 238s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 238s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 238s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 238s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 238s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 239s Fetched 82.3 MB in 58s (1416 kB/s) 239s Selecting previously unselected package libisl23:s390x. 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 58645 files and directories currently installed.) 239s Preparing to unpack .../00-libisl23_0.27-1_s390x.deb ... 239s Unpacking libisl23:s390x (0.27-1) ... 239s Selecting previously unselected package libmpc3:s390x. 239s Preparing to unpack .../01-libmpc3_1.3.1-1build2_s390x.deb ... 239s Unpacking libmpc3:s390x (1.3.1-1build2) ... 239s Selecting previously unselected package cpp-14-s390x-linux-gnu. 239s Preparing to unpack .../02-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package cpp-14. 239s Preparing to unpack .../03-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package cpp-s390x-linux-gnu. 239s Preparing to unpack .../04-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 239s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package cpp. 239s Preparing to unpack .../05-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 239s Unpacking cpp (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package libcc1-0:s390x. 239s Preparing to unpack .../06-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 239s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libitm1:s390x. 239s Preparing to unpack .../07-libitm1_15-20250222-0ubuntu1_s390x.deb ... 239s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libasan8:s390x. 239s Preparing to unpack .../08-libasan8_15-20250222-0ubuntu1_s390x.deb ... 239s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libubsan1:s390x. 239s Preparing to unpack .../09-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 239s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 239s Selecting previously unselected package libgcc-14-dev:s390x. 239s Preparing to unpack .../10-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gcc-14-s390x-linux-gnu. 239s Preparing to unpack .../11-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gcc-14. 239s Preparing to unpack .../12-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package gcc-s390x-linux-gnu. 239s Preparing to unpack .../13-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 239s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package gcc. 239s Preparing to unpack .../14-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 239s Unpacking gcc (4:14.2.0-1ubuntu1) ... 239s Selecting previously unselected package libstdc++-14-dev:s390x. 239s Preparing to unpack .../15-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 239s Selecting previously unselected package g++-14-s390x-linux-gnu. 239s Preparing to unpack .../16-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 239s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package g++-14. 240s Preparing to unpack .../17-g++-14_14.2.0-17ubuntu3_s390x.deb ... 240s Unpacking g++-14 (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package g++-s390x-linux-gnu. 240s Preparing to unpack .../18-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 240s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package g++. 240s Preparing to unpack .../19-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 240s Unpacking g++ (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package build-essential. 240s Preparing to unpack .../20-build-essential_12.10ubuntu1_s390x.deb ... 240s Unpacking build-essential (12.10ubuntu1) ... 240s Selecting previously unselected package dctrl-tools. 240s Preparing to unpack .../21-dctrl-tools_2.24-3build3_s390x.deb ... 240s Unpacking dctrl-tools (2.24-3build3) ... 240s Selecting previously unselected package libgfortran-14-dev:s390x. 240s Preparing to unpack .../22-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 240s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 240s Preparing to unpack .../23-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 240s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gfortran-14. 240s Preparing to unpack .../24-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 240s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 240s Selecting previously unselected package gfortran-s390x-linux-gnu. 240s Preparing to unpack .../25-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 240s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package gfortran. 240s Preparing to unpack .../26-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 240s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 240s Selecting previously unselected package icu-devtools. 240s Preparing to unpack .../27-icu-devtools_76.1-1ubuntu2_s390x.deb ... 240s Unpacking icu-devtools (76.1-1ubuntu2) ... 240s Selecting previously unselected package libblas-dev:s390x. 240s Preparing to unpack .../28-libblas-dev_3.12.1-2_s390x.deb ... 240s Unpacking libblas-dev:s390x (3.12.1-2) ... 240s Selecting previously unselected package libbz2-dev:s390x. 240s Preparing to unpack .../29-libbz2-dev_1.0.8-6_s390x.deb ... 240s Unpacking libbz2-dev:s390x (1.0.8-6) ... 240s Selecting previously unselected package libdeflate-dev:s390x. 240s Preparing to unpack .../30-libdeflate-dev_1.23-1_s390x.deb ... 240s Unpacking libdeflate-dev:s390x (1.23-1) ... 240s Selecting previously unselected package libicu-dev:s390x. 240s Preparing to unpack .../31-libicu-dev_76.1-1ubuntu2_s390x.deb ... 240s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 240s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 240s Preparing to unpack .../32-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 240s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 240s Selecting previously unselected package libjpeg8-dev:s390x. 240s Preparing to unpack .../33-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 240s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 240s Selecting previously unselected package libjpeg-dev:s390x. 240s Preparing to unpack .../34-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 240s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 240s Selecting previously unselected package liblapack-dev:s390x. 240s Preparing to unpack .../35-liblapack-dev_3.12.1-2_s390x.deb ... 240s Unpacking liblapack-dev:s390x (3.12.1-2) ... 240s Selecting previously unselected package libncurses-dev:s390x. 240s Preparing to unpack .../36-libncurses-dev_6.5+20250216-2_s390x.deb ... 240s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 240s Selecting previously unselected package libpcre2-16-0:s390x. 240s Preparing to unpack .../37-libpcre2-16-0_10.45-1_s390x.deb ... 240s Unpacking libpcre2-16-0:s390x (10.45-1) ... 240s Selecting previously unselected package libpcre2-32-0:s390x. 240s Preparing to unpack .../38-libpcre2-32-0_10.45-1_s390x.deb ... 240s Unpacking libpcre2-32-0:s390x (10.45-1) ... 240s Selecting previously unselected package libpcre2-posix3:s390x. 240s Preparing to unpack .../39-libpcre2-posix3_10.45-1_s390x.deb ... 240s Unpacking libpcre2-posix3:s390x (10.45-1) ... 240s Selecting previously unselected package libpcre2-dev:s390x. 240s Preparing to unpack .../40-libpcre2-dev_10.45-1_s390x.deb ... 240s Unpacking libpcre2-dev:s390x (10.45-1) ... 240s Selecting previously unselected package libpkgconf3:s390x. 240s Preparing to unpack .../41-libpkgconf3_1.8.1-4_s390x.deb ... 240s Unpacking libpkgconf3:s390x (1.8.1-4) ... 240s Selecting previously unselected package zlib1g-dev:s390x. 240s Preparing to unpack .../42-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 240s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 240s Selecting previously unselected package libpng-dev:s390x. 240s Preparing to unpack .../43-libpng-dev_1.6.47-1_s390x.deb ... 240s Unpacking libpng-dev:s390x (1.6.47-1) ... 240s Selecting previously unselected package libreadline-dev:s390x. 240s Preparing to unpack .../44-libreadline-dev_8.2-6_s390x.deb ... 240s Unpacking libreadline-dev:s390x (8.2-6) ... 240s Selecting previously unselected package liblzma-dev:s390x. 240s Preparing to unpack .../45-liblzma-dev_5.6.4-1_s390x.deb ... 240s Unpacking liblzma-dev:s390x (5.6.4-1) ... 240s Selecting previously unselected package pkgconf-bin. 240s Preparing to unpack .../46-pkgconf-bin_1.8.1-4_s390x.deb ... 240s Unpacking pkgconf-bin (1.8.1-4) ... 240s Selecting previously unselected package pkgconf:s390x. 240s Preparing to unpack .../47-pkgconf_1.8.1-4_s390x.deb ... 240s Unpacking pkgconf:s390x (1.8.1-4) ... 240s Selecting previously unselected package libtirpc-dev:s390x. 240s Preparing to unpack .../48-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 240s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 240s Selecting previously unselected package r-base-dev. 240s Preparing to unpack .../49-r-base-dev_4.4.3-1_all.deb ... 240s Unpacking r-base-dev (4.4.3-1) ... 240s Selecting previously unselected package pkg-r-autopkgtest. 240s Preparing to unpack .../50-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 240s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 240s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 240s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 240s Setting up libreadline-dev:s390x (8.2-6) ... 240s Setting up libpcre2-16-0:s390x (10.45-1) ... 240s Setting up libpcre2-32-0:s390x (10.45-1) ... 240s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 240s Setting up libpkgconf3:s390x (1.8.1-4) ... 240s Setting up libmpc3:s390x (1.3.1-1build2) ... 240s Setting up icu-devtools (76.1-1ubuntu2) ... 240s Setting up pkgconf-bin (1.8.1-4) ... 240s Setting up liblzma-dev:s390x (5.6.4-1) ... 240s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 240s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 240s Setting up libpcre2-posix3:s390x (10.45-1) ... 240s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 240s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 240s Setting up libisl23:s390x (0.27-1) ... 240s Setting up libdeflate-dev:s390x (1.23-1) ... 240s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 240s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 240s Setting up libblas-dev:s390x (3.12.1-2) ... 240s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 240s Setting up dctrl-tools (2.24-3build3) ... 240s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 240s Setting up libbz2-dev:s390x (1.0.8-6) ... 240s Setting up libpcre2-dev:s390x (10.45-1) ... 240s Setting up libpng-dev:s390x (1.6.47-1) ... 240s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 240s Setting up pkgconf:s390x (1.8.1-4) ... 240s Setting up liblapack-dev:s390x (3.12.1-2) ... 240s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 240s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 240s Setting up cpp-14 (14.2.0-17ubuntu3) ... 240s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 240s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 240s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 240s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 240s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 240s Setting up cpp (4:14.2.0-1ubuntu1) ... 240s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 240s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Setting up gcc-14 (14.2.0-17ubuntu3) ... 240s Setting up g++-14 (14.2.0-17ubuntu3) ... 240s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 240s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 240s Setting up gcc (4:14.2.0-1ubuntu1) ... 240s Setting up g++ (4:14.2.0-1ubuntu1) ... 240s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 240s Setting up build-essential (12.10ubuntu1) ... 240s Setting up gfortran (4:14.2.0-1ubuntu1) ... 241s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 241s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 241s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 241s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 241s Setting up r-base-dev (4.4.3-1) ... 241s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 241s Processing triggers for libc-bin (2.41-1ubuntu2) ... 241s Processing triggers for man-db (2.13.0-1) ... 241s Processing triggers for install-info (7.1.1-1) ... 242s autopkgtest [17:59:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 242s autopkgtest [17:59:53]: test pkg-r-autopkgtest: [----------------------- 243s Test: Try to load the R library circular 243s 243s R version 4.4.3 (2025-02-28) -- "Trophy Case" 243s Copyright (C) 2025 The R Foundation for Statistical Computing 243s Platform: s390x-ibm-linux-gnu 243s 243s R is free software and comes with ABSOLUTELY NO WARRANTY. 243s You are welcome to redistribute it under certain conditions. 243s Type 'license()' or 'licence()' for distribution details. 243s 243s R is a collaborative project with many contributors. 243s Type 'contributors()' for more information and 243s 'citation()' on how to cite R or R packages in publications. 243s 243s Type 'demo()' for some demos, 'help()' for on-line help, or 243s 'help.start()' for an HTML browser interface to help. 243s Type 'q()' to quit R. 243s 243s > library('circular') 243s > 243s > 243s 243s Attaching package: ‘circular’ 243s 243s The following objects are masked from ‘package:stats’: 243s 243s sd, var 243s 243s Other tests are currently unsupported! 243s They will be progressively added. 243s autopkgtest [17:59:54]: test pkg-r-autopkgtest: -----------------------] 244s autopkgtest [17:59:55]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 244s pkg-r-autopkgtest PASS 244s autopkgtest [17:59:55]: @@@@@@@@@@@@@@@@@@@@ summary 244s run-unit-test PASS 244s pkg-r-autopkgtest PASS 249s nova [W] Using flock in prodstack6-s390x 249s Creating nova instance adt-plucky-s390x-r-cran-circular-20250315-175551-juju-7f2275-prod-proposed-migration-environment-2-17fb87a8-e8cb-45db-983b-da07e1b03894 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 249s nova [W] Timed out waiting for 387f0519-2daf-4584-aa11-b8a34588116b to get deleted.