0s autopkgtest [17:54:39]: starting date and time: 2025-03-15 17:54:39+0000 0s autopkgtest [17:54:39]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:54:39]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.7g7o0gkq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-cran-bio3d --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-10.secgroup --name adt-plucky-s390x-r-cran-bio3d-20250315-175439-juju-7f2275-prod-proposed-migration-environment-15-70d83f26-9070-4836-ad96-11e98ba761e1 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 71s autopkgtest [17:55:50]: testbed dpkg architecture: s390x 71s autopkgtest [17:55:50]: testbed apt version: 2.9.33 71s autopkgtest [17:55:50]: @@@@@@@@@@@@@@@@@@@@ test bed setup 71s autopkgtest [17:55:50]: testbed release detected to be: None 72s autopkgtest [17:55:51]: updating testbed package index (apt update) 72s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 73s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 73s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 73s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 73s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 73s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 73s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 73s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 73s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 73s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 73s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 74s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 74s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 74s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 74s Fetched 1073 kB in 1s (804 kB/s) 74s Reading package lists... 75s + lsb_release --codename --short 75s Reading package lists...+ RELEASE=plucky 75s + cat 75s + [ plucky != trusty ] 75s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 75s 75s Building dependency tree... 75s Reading state information... 75s Calculating upgrade... 75s Calculating upgrade... 75s The following packages were automatically installed and are no longer required: 75s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 75s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 75s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 75s linux-tools-6.11.0-8-generic 75s Use 'sudo apt autoremove' to remove them. 75s The following packages will be upgraded: 75s pinentry-curses python3-jinja2 strace 76s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Need to get 652 kB of archives. 76s After this operation, 27.6 kB of additional disk space will be used. 76s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 76s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 76s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 77s Fetched 652 kB in 1s (728 kB/s) 77s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 77s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 77s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 77s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 77s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 77s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 77s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 77s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 77s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 77s Setting up strace (6.13+ds-1ubuntu1) ... 77s Processing triggers for man-db (2.13.0-1) ... 77s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 77s + /usr/lib/apt/apt-helper analyze-pattern ?true 77s + uname -r 77s + sed s/\./\\./g 77s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 77s + apt list ?obsolete 77s + tail -n+2 77s + grep -v ^linux-.*6\.14\.0-10-generic.* 77s + cut -d/ -f1 78s + obsolete_pkgs=linux-headers-6.11.0-8-generic 78s linux-headers-6.11.0-8 78s linux-modules-6.11.0-8-generic 78s linux-tools-6.11.0-8-generic 78s linux-tools-6.11.0-8 78s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 78s Reading package lists... 78s Building dependency tree... 78s Reading state information... 78s Solving dependencies... 78s The following packages will be REMOVED: 78s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 78s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 78s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 78s linux-tools-6.11.0-8-generic* 78s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 78s After this operation, 167 MB disk space will be freed. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 78s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 78s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 78s Removing libpython3.12t64:s390x (3.12.9-1) ... 78s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 78s Removing libnsl2:s390x (1.3.0-3build3) ... 78s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 78s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 78s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 80s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 80s + grep -q trusty /etc/lsb-release 80s Processing triggers for libc-bin (2.41-1ubuntu1) ... 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 80s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 80s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 80s Starting 2 pkgProblemResolver with broken count: 0 80s Done 80s Entering ResolveByKeep 80s 80s Calculating upgrade...+ [ ! -d /usr/share/doc/unattended-upgrades ] 80s + [ ! -d /usr/share/doc/lxd ] 80s + [ ! -d /usr/share/doc/lxd-client ] 80s + [ ! -d /usr/share/doc/snapd ] 80s + type iptables 80s + cat 80s + chmod 755 /etc/rc.local 80s + . /etc/rc.local 80s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 80s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 80s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 80s + uname -m 80s + [ s390x = ppc64le ] 80s + [ -d /run/systemd/system ] 80s + systemd-detect-virt --quiet --vm 80s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 80s + cat 80s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 80s + echo COMPRESS=lz4 80s autopkgtest [17:55:58]: upgrading testbed (apt dist-upgrade and autopurge) 80s 80s The following packages will be upgraded: 80s libc-bin libc-dev-bin libc6 libc6-dev locales 80s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 80s Need to get 9512 kB of archives. 80s After this operation, 8192 B of additional disk space will be used. 80s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 82s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 82s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 85s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 86s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 89s Preconfiguring packages ... 89s Fetched 9512 kB in 9s (1063 kB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 89s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 89s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 89s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 89s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 89s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 90s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 90s Setting up libc6:s390x (2.41-1ubuntu2) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 90s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 90s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 90s Setting up libc-bin (2.41-1ubuntu2) ... 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 90s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 90s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 90s Setting up locales (2.41-1ubuntu2) ... 90s Generating locales (this might take a while)... 91s en_US.UTF-8... done 91s Generation complete. 91s Setting up libc-dev-bin (2.41-1ubuntu2) ... 91s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 91s Processing triggers for man-db (2.13.0-1) ... 91s Processing triggers for systemd (257.3-1ubuntu3) ... 92s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s Starting pkgProblemResolver with broken count: 0 92s Starting 2 pkgProblemResolver with broken count: 0 92s Done 92s Solving dependencies... 93s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 93s autopkgtest [17:56:12]: rebooting testbed after setup commands that affected boot 113s autopkgtest [17:56:32]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 115s autopkgtest [17:56:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bio3d 118s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-5-1 (dsc) [2285 B] 118s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-5-1 (tar) [1544 kB] 118s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-5-1 (diff) [5468 B] 118s gpgv: Signature made Wed Jan 29 00:14:06 2025 UTC 118s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 118s gpgv: issuer "plessy@debian.org" 118s gpgv: Can't check signature: No public key 118s dpkg-source: warning: cannot verify inline signature for ./r-cran-bio3d_2.4-5-1.dsc: no acceptable signature found 118s autopkgtest [17:56:37]: testing package r-cran-bio3d version 2.4-5-1 119s autopkgtest [17:56:38]: build not needed 126s autopkgtest [17:56:45]: test run-unit-test: preparing testbed 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 127s Starting pkgProblemResolver with broken count: 0 127s Starting 2 pkgProblemResolver with broken count: 0 127s Done 127s The following NEW packages will be installed: 127s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 127s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax 127s javascript-common libaec0 libamd3 libasan8 libblas3 libboost-dev 127s libboost1.83-dev libcairo2 libcolamd3 libdatrie1 libdeflate0 libfontconfig1 127s libfreetype6 libgcc-14-dev libgfortran5 libglpk40 libgomp1 libgraphite2-3 127s libharfbuzz0b libhdf5-310 libhdf5-hl-310 libice6 libitm1 libjbig0 127s libjpeg-turbo8 libjpeg8 libjs-bootstrap libjs-bootstrap4 libjs-d3 127s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 127s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 127s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 127s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack3 libltdl7 127s liblua5.4-0 libnetcdf22 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 127s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libstdc++-14-dev 127s libsuitesparseconfig7 libsz2 libtcl8.6 libthai-data libthai0 libtiff6 127s libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 127s libxss1 libxt6t64 littler node-bootstrap-sass node-html5shiv 127s node-normalize.css pandoc pandoc-data r-base-core r-bioc-biocgenerics 127s r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges 127s r-bioc-s4vectors r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc 127s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-bigmemory 127s r-cran-bigmemory.sri r-cran-bio3d r-cran-bitops r-cran-brio r-cran-bslib 127s r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11 127s r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj r-cran-digest 127s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue 127s r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-igraph 127s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lattice 127s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix r-cran-memoise 127s r-cran-mime r-cran-ncdf4 r-cran-openssl r-cran-pkgbuild r-cran-pkgconfig 127s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx 127s r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 127s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 127s r-cran-sourcetools r-cran-sys r-cran-testthat r-cran-tinytex r-cran-uuid 127s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable 127s r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 127s 0 upgraded, 170 newly installed, 0 to remove and 0 not upgraded. 127s Need to get 210 MB of archives. 127s After this operation, 869 MB of additional disk space will be used. 127s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 128s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 129s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 129s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 129s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 130s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 130s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 130s Get:8 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 130s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 133s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 133s Get:11 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 133s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 133s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libsuitesparseconfig7 s390x 1:7.8.3+dfsg-3 [13.2 kB] 133s Get:14 http://ftpmaster.internal/ubuntu plucky/universe s390x libamd3 s390x 1:7.8.3+dfsg-3 [35.1 kB] 133s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 136s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 136s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 136s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 137s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 138s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 141s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB] 152s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 152s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 152s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 152s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 152s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 152s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 153s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libcolamd3 s390x 1:7.8.3+dfsg-3 [23.4 kB] 153s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 153s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 153s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 153s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB] 153s Get:33 http://ftpmaster.internal/ubuntu plucky/universe s390x libglpk40 s390x 5.0-1build2 [406 kB] 154s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 154s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 154s Get:36 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 154s Get:37 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 155s Get:38 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 156s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 156s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 156s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 156s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 156s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 156s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 156s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 156s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 156s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 156s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 157s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 157s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 157s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 157s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 157s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 157s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 157s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 157s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 157s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 160s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 160s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 161s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 161s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 161s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 161s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 161s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 161s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 161s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 161s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 161s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 161s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 162s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 162s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 162s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 163s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 163s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 163s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 163s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 164s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 164s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 164s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 164s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 189s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 189s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 189s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 189s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 189s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 189s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 189s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 237s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 237s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 239s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 241s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 241s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 242s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 242s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 242s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 243s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 243s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 243s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 243s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 243s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 243s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 244s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 244s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 254s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 257s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 257s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 266s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 266s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 266s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 266s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 266s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 267s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-uuid s390x 1.2-1-1 [49.3 kB] 267s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bigmemory s390x 4.6.4-1ubuntu1 [529 kB] 267s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bio3d s390x 2.4-5-1 [3027 kB] 269s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 269s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB] 269s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 270s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 270s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 270s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 270s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 271s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 271s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 272s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 272s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 272s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 272s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 272s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 272s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 273s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 276s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB] 276s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB] 276s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB] 276s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 276s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 277s Get:136 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 277s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 278s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 278s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 278s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 279s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 279s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 279s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 279s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 279s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 280s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 281s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 284s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 284s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 285s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-igraph s390x 2.1.4-1 [5311 kB] 289s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 289s Get:152 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 293s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 293s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ncdf4 s390x 1.23-1build1 [279 kB] 293s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB] 294s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB] 294s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 294s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB] 294s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 294s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 295s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 295s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 295s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 295s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 295s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 295s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 298s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 299s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB] 299s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB] 300s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 302s Preconfiguring packages ... 302s Fetched 210 MB in 2min 54s (1205 kB/s) 302s Selecting previously unselected package libfreetype6:s390x. 302s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 302s Preparing to unpack .../000-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 302s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 302s Selecting previously unselected package fonts-dejavu-mono. 302s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 302s Unpacking fonts-dejavu-mono (2.37-8) ... 302s Selecting previously unselected package fonts-dejavu-core. 302s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 302s Unpacking fonts-dejavu-core (2.37-8) ... 302s Selecting previously unselected package fontconfig-config. 302s Preparing to unpack .../003-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 302s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 302s Selecting previously unselected package libfontconfig1:s390x. 302s Preparing to unpack .../004-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 302s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 302s Selecting previously unselected package fontconfig. 302s Preparing to unpack .../005-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 302s Unpacking fontconfig (2.15.0-2ubuntu1) ... 302s Selecting previously unselected package fonts-font-awesome. 302s Preparing to unpack .../006-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 302s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 302s Selecting previously unselected package fonts-glyphicons-halflings. 302s Preparing to unpack .../007-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 302s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 302s Selecting previously unselected package fonts-mathjax. 302s Preparing to unpack .../008-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 302s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 303s Selecting previously unselected package javascript-common. 303s Preparing to unpack .../009-javascript-common_12_all.deb ... 303s Unpacking javascript-common (12) ... 303s Selecting previously unselected package libaec0:s390x. 303s Preparing to unpack .../010-libaec0_1.1.3-1_s390x.deb ... 303s Unpacking libaec0:s390x (1.1.3-1) ... 303s Selecting previously unselected package libgomp1:s390x. 303s Preparing to unpack .../011-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 303s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 303s Selecting previously unselected package libsuitesparseconfig7:s390x. 303s Preparing to unpack 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... 303s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 303s Selecting previously unselected package libgcc-14-dev:s390x. 303s Preparing to unpack .../018-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 303s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 303s Selecting previously unselected package libstdc++-14-dev:s390x. 303s Preparing to unpack .../019-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 303s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 303s Selecting previously unselected package libboost1.83-dev:s390x. 303s Preparing to unpack .../020-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ... 303s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 304s Selecting previously unselected package libboost-dev:s390x. 304s Preparing to unpack .../021-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 304s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 304s Selecting previously unselected package libpixman-1-0:s390x. 304s Preparing to unpack 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libcolamd3:s390x (1:7.8.3+dfsg-3) ... 304s Selecting previously unselected package libdatrie1:s390x. 304s Preparing to unpack .../028-libdatrie1_0.2.13-3build1_s390x.deb ... 304s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 304s Selecting previously unselected package libdeflate0:s390x. 304s Preparing to unpack .../029-libdeflate0_1.23-1_s390x.deb ... 304s Unpacking libdeflate0:s390x (1.23-1) ... 304s Selecting previously unselected package libgfortran5:s390x. 304s Preparing to unpack .../030-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 304s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 304s Selecting previously unselected package libltdl7:s390x. 304s Preparing to unpack .../031-libltdl7_2.5.4-4_s390x.deb ... 304s Unpacking libltdl7:s390x (2.5.4-4) ... 304s Selecting previously unselected package libglpk40:s390x. 304s Preparing to unpack .../032-libglpk40_5.0-1build2_s390x.deb ... 304s Unpacking libglpk40:s390x (5.0-1build2) ... 304s Selecting previously unselected package libgraphite2-3:s390x. 304s Preparing to unpack .../033-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 304s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 304s Selecting previously unselected package libharfbuzz0b:s390x. 304s Preparing to unpack .../034-libharfbuzz0b_10.2.0-1_s390x.deb ... 304s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 304s Selecting previously unselected package libsz2:s390x. 304s Preparing to unpack .../035-libsz2_1.1.3-1_s390x.deb ... 304s Unpacking libsz2:s390x (1.1.3-1) ... 304s Selecting previously unselected package libhdf5-310:s390x. 304s Preparing to unpack .../036-libhdf5-310_1.14.5+repack-3_s390x.deb ... 304s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 304s Selecting previously unselected package libhdf5-hl-310:s390x. 304s Preparing to unpack .../037-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 304s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 304s Selecting previously unselected package x11-common. 304s Preparing to unpack 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(1.16.1+ds-6) ... 304s Selecting previously unselected package libjs-bootstrap4. 304s Preparing to unpack .../044-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 304s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 304s Selecting previously unselected package libjs-d3. 304s Preparing to unpack .../045-libjs-d3_3.5.17-4_all.deb ... 304s Unpacking libjs-d3 (3.5.17-4) ... 304s Selecting previously unselected package libjs-es5-shim. 304s Preparing to unpack .../046-libjs-es5-shim_4.6.7-2_all.deb ... 304s Unpacking libjs-es5-shim (4.6.7-2) ... 304s Selecting previously unselected package libjs-highlight.js. 304s Preparing to unpack .../047-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 304s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 304s Selecting previously unselected package libjs-jquery. 304s Preparing to unpack .../048-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 304s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 304s Selecting previously unselected package libjs-jquery-datatables. 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304s Preparing to unpack .../054-libjs-json_0~20221030+~1.0.8-1_all.deb ... 304s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 304s Selecting previously unselected package libjs-prettify. 304s Preparing to unpack .../055-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 304s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 304s Selecting previously unselected package liblapack3:s390x. 304s Preparing to unpack .../056-liblapack3_3.12.1-2_s390x.deb ... 304s Unpacking liblapack3:s390x (3.12.1-2) ... 304s Selecting previously unselected package liblua5.4-0:s390x. 304s Preparing to unpack .../057-liblua5.4-0_5.4.7-1_s390x.deb ... 304s Unpacking liblua5.4-0:s390x (5.4.7-1) ... 304s Selecting previously unselected package libnetcdf22:s390x. 304s Preparing to unpack .../058-libnetcdf22_1%3a4.9.3-1_s390x.deb ... 304s Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 304s Selecting previously unselected package libthai-data. 304s Preparing to unpack .../059-libthai-data_0.1.29-2build1_all.deb ... 304s 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(1:1.2.1-1.2build1) ... 305s Selecting previously unselected package zip. 305s Preparing to unpack .../076-zip_3.0-14ubuntu2_s390x.deb ... 305s Unpacking zip (3.0-14ubuntu2) ... 305s Selecting previously unselected package unzip. 305s Preparing to unpack .../077-unzip_6.0-28ubuntu6_s390x.deb ... 305s Unpacking unzip (6.0-28ubuntu6) ... 305s Selecting previously unselected package xdg-utils. 305s Preparing to unpack .../078-xdg-utils_1.2.1-2ubuntu1_all.deb ... 305s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 305s Selecting previously unselected package r-base-core. 305s Preparing to unpack .../079-r-base-core_4.4.3-1_s390x.deb ... 305s Unpacking r-base-core (4.4.3-1) ... 305s Selecting previously unselected package r-cran-littler. 305s Preparing to unpack .../080-r-cran-littler_0.3.20-2_s390x.deb ... 305s Unpacking r-cran-littler (0.3.20-2) ... 305s Selecting previously unselected package littler. 305s Preparing to unpack .../081-littler_0.3.20-2_all.deb ... 305s Unpacking littler (0.3.20-2) ... 305s Selecting previously unselected package node-bootstrap-sass. 305s Preparing to unpack .../082-node-bootstrap-sass_3.4.3-2_all.deb ... 305s Unpacking node-bootstrap-sass (3.4.3-2) ... 305s Selecting previously unselected package node-html5shiv. 305s Preparing to unpack .../083-node-html5shiv_3.7.3+dfsg-5_all.deb ... 305s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 305s Selecting previously unselected package node-normalize.css. 305s Preparing to unpack .../084-node-normalize.css_8.0.1-5_all.deb ... 305s Unpacking node-normalize.css (8.0.1-5) ... 305s Selecting previously unselected package pandoc-data. 305s Preparing to unpack .../085-pandoc-data_3.1.11.1-3build1_all.deb ... 305s Unpacking pandoc-data (3.1.11.1-3build1) ... 305s Selecting previously unselected package pandoc. 305s Preparing to unpack .../086-pandoc_3.1.11.1+ds-2_s390x.deb ... 305s Unpacking pandoc (3.1.11.1+ds-2) ... 306s Selecting previously unselected package r-bioc-biocgenerics. 306s Preparing to unpack .../087-r-bioc-biocgenerics_0.52.0-2_all.deb ... 306s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 306s Selecting previously unselected package r-bioc-s4vectors. 306s Preparing to unpack .../088-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 306s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 306s Selecting previously unselected package r-bioc-iranges. 306s Preparing to unpack .../089-r-bioc-iranges_2.40.1-2_s390x.deb ... 306s Unpacking r-bioc-iranges (2.40.1-2) ... 306s Selecting previously unselected package zlib1g-dev:s390x. 306s Preparing to unpack .../090-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 306s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 307s Selecting previously unselected package r-bioc-zlibbioc. 307s Preparing to unpack .../091-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 307s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 307s Selecting previously unselected package r-bioc-xvector. 307s Preparing to unpack .../092-r-bioc-xvector_0.46.0-2_s390x.deb ... 307s Unpacking r-bioc-xvector (0.46.0-2) ... 307s Selecting previously unselected package r-cran-curl. 307s Preparing to unpack .../093-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 307s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 307s Selecting previously unselected package r-cran-jsonlite. 307s Preparing to unpack .../094-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 307s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 307s Selecting previously unselected package r-cran-mime. 307s Preparing to unpack .../095-r-cran-mime_0.12-2_s390x.deb ... 307s Unpacking r-cran-mime (0.12-2) ... 307s Selecting previously unselected package r-cran-sys. 307s Preparing to unpack .../096-r-cran-sys_3.4.3-1_s390x.deb ... 307s Unpacking r-cran-sys (3.4.3-1) ... 307s Selecting previously unselected package r-cran-askpass. 307s Preparing to unpack .../097-r-cran-askpass_1.2.1-1_s390x.deb ... 307s Unpacking r-cran-askpass (1.2.1-1) ... 307s Selecting previously unselected package r-cran-openssl. 307s Preparing to unpack .../098-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 307s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 307s Selecting previously unselected package r-cran-r6. 307s Preparing to unpack .../099-r-cran-r6_2.6.1-1_all.deb ... 307s Unpacking r-cran-r6 (2.6.1-1) ... 307s Selecting previously unselected package r-cran-httr. 307s Preparing to unpack .../100-r-cran-httr_1.4.7+dfsg-1_all.deb ... 307s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 307s Selecting previously unselected package r-bioc-ucsc.utils. 307s Preparing to unpack .../101-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 307s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 307s Selecting previously unselected package r-bioc-genomeinfodbdata. 307s Preparing to unpack .../102-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 307s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 307s Selecting previously unselected package r-bioc-genomeinfodb. 307s Preparing to unpack .../103-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 307s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 307s Selecting previously unselected package r-cran-crayon. 307s Preparing to unpack .../104-r-cran-crayon_1.5.3-1_all.deb ... 307s Unpacking r-cran-crayon (1.5.3-1) ... 307s Selecting previously unselected package r-bioc-biostrings. 307s Preparing to unpack .../105-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 307s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 307s Selecting previously unselected package r-cran-base64enc. 307s Preparing to unpack .../106-r-cran-base64enc_0.1-3-3_s390x.deb ... 307s Unpacking r-cran-base64enc (0.1-3-3) ... 307s Selecting previously unselected package r-cran-bh. 307s Preparing to unpack .../107-r-cran-bh_1.84.0-1_all.deb ... 307s Unpacking r-cran-bh (1.84.0-1) ... 307s Selecting previously unselected package r-cran-bigmemory.sri. 307s Preparing to unpack .../108-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 307s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 307s Selecting previously unselected package r-cran-pkgkitten. 307s Preparing to unpack .../109-r-cran-pkgkitten_0.2.4-1_all.deb ... 307s Unpacking r-cran-pkgkitten (0.2.4-1) ... 307s Selecting previously unselected package r-cran-rcpp. 307s Preparing to unpack .../110-r-cran-rcpp_1.0.14-1_s390x.deb ... 307s Unpacking r-cran-rcpp (1.0.14-1) ... 307s Selecting previously unselected package r-cran-uuid. 307s Preparing to unpack .../111-r-cran-uuid_1.2-1-1_s390x.deb ... 307s Unpacking r-cran-uuid (1.2-1-1) ... 307s Selecting previously unselected package r-cran-bigmemory. 307s Preparing to unpack .../112-r-cran-bigmemory_4.6.4-1ubuntu1_s390x.deb ... 307s Unpacking r-cran-bigmemory (4.6.4-1ubuntu1) ... 307s Selecting previously unselected package r-cran-bio3d. 307s Preparing to unpack .../113-r-cran-bio3d_2.4-5-1_s390x.deb ... 307s Unpacking r-cran-bio3d (2.4-5-1) ... 307s Selecting previously unselected package r-cran-bitops. 307s Preparing to unpack .../114-r-cran-bitops_1.0-9-1_s390x.deb ... 307s Unpacking r-cran-bitops (1.0-9-1) ... 307s Selecting previously unselected package r-cran-brio. 307s Preparing to unpack .../115-r-cran-brio_1.1.5-1_s390x.deb ... 307s Unpacking r-cran-brio (1.1.5-1) ... 307s Selecting previously unselected package r-cran-rlang. 307s Preparing to unpack .../116-r-cran-rlang_1.1.5-1_s390x.deb ... 307s Unpacking r-cran-rlang (1.1.5-1) ... 307s Selecting previously unselected package r-cran-fastmap. 307s Preparing to unpack .../117-r-cran-fastmap_1.2.0-1_s390x.deb ... 307s Unpacking r-cran-fastmap (1.2.0-1) ... 307s Selecting previously unselected package r-cran-cachem. 307s Preparing to unpack .../118-r-cran-cachem_1.1.0-1_s390x.deb ... 307s Unpacking r-cran-cachem (1.1.0-1) ... 307s Selecting previously unselected package r-cran-digest. 307s Preparing to unpack .../119-r-cran-digest_0.6.37-1_s390x.deb ... 307s Unpacking r-cran-digest (0.6.37-1) ... 307s Selecting previously unselected package r-cran-htmltools. 307s Preparing to unpack .../120-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 307s Unpacking r-cran-htmltools (0.5.8.1-1) ... 307s Selecting previously unselected package r-cran-jquerylib. 307s Preparing to unpack .../121-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 307s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 307s Selecting previously unselected package r-cran-cli. 307s Preparing to unpack .../122-r-cran-cli_3.6.4-1_s390x.deb ... 307s Unpacking r-cran-cli (3.6.4-1) ... 307s Selecting previously unselected package r-cran-glue. 307s Preparing to unpack .../123-r-cran-glue_1.8.0-1_s390x.deb ... 307s Unpacking r-cran-glue (1.8.0-1) ... 307s Selecting previously unselected package r-cran-lifecycle. 307s Preparing to unpack .../124-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 307s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 307s Selecting previously unselected package r-cran-memoise. 307s Preparing to unpack .../125-r-cran-memoise_2.0.1-1_all.deb ... 307s Unpacking r-cran-memoise (2.0.1-1) ... 307s Selecting previously unselected package r-cran-fs. 307s Preparing to unpack .../126-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 307s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 307s Selecting previously unselected package r-cran-rappdirs. 307s Preparing to unpack .../127-r-cran-rappdirs_0.3.3-1_s390x.deb ... 307s Unpacking r-cran-rappdirs (0.3.3-1) ... 307s Selecting previously unselected package r-cran-sass. 307s Preparing to unpack .../128-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 307s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 307s Selecting previously unselected package r-cran-bslib. 307s Preparing to unpack .../129-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 307s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 307s Selecting previously unselected package r-cran-ps. 307s Preparing to unpack .../130-r-cran-ps_1.9.0-1_s390x.deb ... 307s Unpacking r-cran-ps (1.9.0-1) ... 307s Selecting previously unselected package r-cran-processx. 307s Preparing to unpack .../131-r-cran-processx_3.8.6-1_s390x.deb ... 307s Unpacking r-cran-processx (3.8.6-1) ... 307s Selecting previously unselected package r-cran-callr. 307s Preparing to unpack .../132-r-cran-callr_3.7.6-1_all.deb ... 307s Unpacking r-cran-callr (3.7.6-1) ... 307s Selecting previously unselected package r-cran-commonmark. 307s Preparing to unpack .../133-r-cran-commonmark_1.9.2-2_s390x.deb ... 307s Unpacking r-cran-commonmark (1.9.2-2) ... 307s Selecting previously unselected package r-cran-cpp11. 307s Preparing to unpack .../134-r-cran-cpp11_0.5.2-1_all.deb ... 307s Unpacking r-cran-cpp11 (0.5.2-1) ... 307s Selecting previously unselected package r-cran-desc. 307s Preparing to unpack .../135-r-cran-desc_1.4.3-1_all.deb ... 307s Unpacking r-cran-desc (1.4.3-1) ... 307s Selecting previously unselected package r-cran-diffobj. 307s Preparing to unpack .../136-r-cran-diffobj_0.3.5-1_s390x.deb ... 307s Unpacking r-cran-diffobj (0.3.5-1) ... 307s Selecting previously unselected package r-cran-evaluate. 307s Preparing to unpack .../137-r-cran-evaluate_1.0.3-1_all.deb ... 307s Unpacking r-cran-evaluate (1.0.3-1) ... 307s Selecting previously unselected package r-cran-fontawesome. 307s Preparing to unpack .../138-r-cran-fontawesome_0.5.3-1_all.deb ... 307s Unpacking r-cran-fontawesome (0.5.3-1) ... 307s Selecting previously unselected package r-cran-xfun. 307s Preparing to unpack .../139-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 307s Unpacking r-cran-xfun (0.51+dfsg-1) ... 308s Selecting previously unselected package r-cran-highr. 308s Preparing to unpack .../140-r-cran-highr_0.11+dfsg-1_all.deb ... 308s Unpacking r-cran-highr (0.11+dfsg-1) ... 308s Selecting previously unselected package r-cran-later. 308s Preparing to unpack .../141-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 308s Unpacking r-cran-later (1.4.1+dfsg-1) ... 308s Selecting previously unselected package r-cran-magrittr. 308s Preparing to unpack .../142-r-cran-magrittr_2.0.3-1_s390x.deb ... 308s Unpacking r-cran-magrittr (2.0.3-1) ... 308s Selecting previously unselected package r-cran-promises. 308s Preparing to unpack .../143-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 308s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 308s Selecting previously unselected package r-cran-httpuv. 308s Preparing to unpack .../144-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 308s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 308s Selecting previously unselected package r-cran-lattice. 308s Preparing to unpack .../145-r-cran-lattice_0.22-6-1_s390x.deb ... 308s Unpacking r-cran-lattice (0.22-6-1) ... 308s Selecting previously unselected package r-cran-matrix. 308s Preparing to unpack .../146-r-cran-matrix_1.7-3-1_s390x.deb ... 308s Unpacking r-cran-matrix (1.7-3-1) ... 308s Selecting previously unselected package r-cran-pkgconfig. 308s Preparing to unpack .../147-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 308s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 308s Selecting previously unselected package r-cran-vctrs. 308s Preparing to unpack .../148-r-cran-vctrs_0.6.5-1_s390x.deb ... 308s Unpacking r-cran-vctrs (0.6.5-1) ... 308s Selecting previously unselected package r-cran-igraph. 308s Preparing to unpack .../149-r-cran-igraph_2.1.4-1_s390x.deb ... 308s Unpacking r-cran-igraph (2.1.4-1) ... 308s Selecting previously unselected package r-cran-yaml. 308s Preparing to unpack .../150-r-cran-yaml_2.3.10-1_s390x.deb ... 308s Unpacking r-cran-yaml (2.3.10-1) ... 308s Selecting previously unselected package libjs-mathjax. 308s Preparing to unpack .../151-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 308s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 308s Selecting previously unselected package r-cran-knitr. 308s Preparing to unpack .../152-r-cran-knitr_1.49+dfsg-1_all.deb ... 308s Unpacking r-cran-knitr (1.49+dfsg-1) ... 308s Selecting previously unselected package r-cran-ncdf4. 308s Preparing to unpack .../153-r-cran-ncdf4_1.23-1build1_s390x.deb ... 308s Unpacking r-cran-ncdf4 (1.23-1build1) ... 308s Selecting previously unselected package r-cran-pkgbuild. 308s Preparing to unpack .../154-r-cran-pkgbuild_1.4.6-1_all.deb ... 308s Unpacking r-cran-pkgbuild (1.4.6-1) ... 308s Selecting previously unselected package r-cran-rprojroot. 308s Preparing to unpack .../155-r-cran-rprojroot_2.0.4-2_all.deb ... 308s Unpacking r-cran-rprojroot (2.0.4-2) ... 308s Selecting previously unselected package r-cran-withr. 308s Preparing to unpack .../156-r-cran-withr_3.0.2+dfsg-1_all.deb ... 308s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 308s Selecting previously unselected package r-cran-pkgload. 308s Preparing to unpack .../157-r-cran-pkgload_1.4.0-1_all.deb ... 308s Unpacking r-cran-pkgload (1.4.0-1) ... 308s Selecting previously unselected package r-cran-praise. 308s Preparing to unpack .../158-r-cran-praise_1.0.0-4build1_all.deb ... 308s Unpacking r-cran-praise (1.0.0-4build1) ... 308s Selecting previously unselected package r-cran-rcurl. 308s Preparing to unpack .../159-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 308s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 308s Selecting previously unselected package r-cran-tinytex. 308s Preparing to unpack .../160-r-cran-tinytex_0.56-1_all.deb ... 308s Unpacking r-cran-tinytex (0.56-1) ... 308s Selecting previously unselected package libjs-modernizr. 308s Preparing to unpack .../161-libjs-modernizr_3.13.0-0.1_all.deb ... 308s Unpacking libjs-modernizr (3.13.0-0.1) ... 308s Selecting previously unselected package r-cran-xtable. 308s Preparing to unpack .../162-r-cran-xtable_1%3a1.8-4-2_all.deb ... 308s Unpacking r-cran-xtable (1:1.8-4-2) ... 308s Selecting previously unselected package r-cran-sourcetools. 308s Preparing to unpack .../163-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 308s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 308s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 308s Preparing to unpack .../164-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 308s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 308s Selecting previously unselected package r-cran-shiny. 308s Preparing to unpack .../165-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 308s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 308s Selecting previously unselected package r-cran-rmarkdown. 308s Preparing to unpack .../166-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 308s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 309s Selecting previously unselected package r-cran-waldo. 309s Preparing to unpack .../167-r-cran-waldo_0.6.1-2_all.deb ... 309s Unpacking r-cran-waldo (0.6.1-2) ... 309s Selecting previously unselected package r-cran-testthat. 309s Preparing to unpack .../168-r-cran-testthat_3.2.3-1_s390x.deb ... 309s Unpacking r-cran-testthat (3.2.3-1) ... 309s Selecting previously unselected package r-cran-xml. 309s Preparing to unpack .../169-r-cran-xml_3.99-0.18-1_s390x.deb ... 309s Unpacking r-cran-xml (3.99-0.18-1) ... 309s Setting up libjs-json (0~20221030+~1.0.8-1) ... 309s Setting up javascript-common (12) ... 309s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 309s Setting up libpixman-1-0:s390x (0.44.0-3) ... 309s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 309s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 309s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 309s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 309s Setting up libdatrie1:s390x (0.2.13-3build1) ... 309s Setting up libjs-popper.js (1.16.1+ds-6) ... 309s Setting up libxcb-render0:s390x (1.17.0-2) ... 309s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 309s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 309s Setting up unzip (6.0-28ubuntu6) ... 309s Setting up x11-common (1:7.7+23ubuntu3) ... 309s Setting up node-html5shiv (3.7.3+dfsg-5) ... 309s Setting up libdeflate0:s390x (1.23-1) ... 309s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 309s Setting up libxcb-shm0:s390x (1.17.0-2) ... 309s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 309s Setting up libjs-modernizr (3.13.0-0.1) ... 309s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 309s Setting up libaec0:s390x (1.1.3-1) ... 309s Setting up libjs-es5-shim (4.6.7-2) ... 309s Setting up zip (3.0-14ubuntu2) ... 309s Setting up libblas3:s390x (3.12.1-2) ... 309s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 309s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 309s Setting up libjs-d3 (3.5.17-4) ... 309s Setting up fonts-dejavu-mono (2.37-8) ... 309s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 309s Setting up fonts-dejavu-core (2.37-8) ... 309s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 309s Setting up libltdl7:s390x (2.5.4-4) ... 309s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 309s Setting up libwebp7:s390x (1.5.0-0.1) ... 309s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 309s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 309s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 309s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 309s Setting up libsuitesparseconfig7:s390x (1:7.8.3+dfsg-3) ... 309s Setting up liblua5.4-0:s390x (5.4.7-1) ... 309s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 309s Setting up libthai-data (0.1.29-2build1) ... 309s Setting up node-bootstrap-sass (3.4.3-2) ... 309s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 309s Setting up libxss1:s390x (1:1.2.3-1build3) ... 309s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 309s Setting up libpaper2:s390x (2.2.5-0.3) ... 309s Setting up pandoc-data (3.1.11.1-3build1) ... 309s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 309s Setting up node-normalize.css (8.0.1-5) ... 309s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 309s Setting up xdg-utils (1.2.1-2ubuntu1) ... 309s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 309s Setting up libsz2:s390x (1.1.3-1) ... 309s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 309s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 309s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 309s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 309s Setting up libice6:s390x (2:1.1.1-1) ... 309s Setting up liblapack3:s390x (3.12.1-2) ... 309s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 309s Setting up libamd3:s390x (1:7.8.3+dfsg-3) ... 309s Setting up libcolamd3:s390x (1:7.8.3+dfsg-3) ... 309s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 309s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 309s Setting up libpaper-utils (2.2.5-0.3) ... 309s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 309s Setting up libthai0:s390x (0.1.29-2build1) ... 309s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 309s Setting up pandoc (3.1.11.1+ds-2) ... 309s Setting up libglpk40:s390x (5.0-1build2) ... 309s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 309s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 309s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 309s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 309s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 309s Setting up libsm6:s390x (2:1.2.4-1) ... 309s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 309s Setting up fontconfig (2.15.0-2ubuntu1) ... 311s Regenerating fonts cache... done. 311s Setting up libxft2:s390x (2.3.6-1build1) ... 311s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 311s Setting up libtk8.6:s390x (8.6.16-1) ... 311s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 311s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 311s Setting up libcairo2:s390x (1.18.2-2) ... 311s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 311s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ... 311s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 311s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 311s Setting up r-base-core (4.4.3-1) ... 311s Creating config file /etc/R/Renviron with new version 311s Setting up r-cran-crayon (1.5.3-1) ... 311s Setting up r-cran-sourcetools (0.1.7-1-1) ... 311s Setting up r-cran-lattice (0.22-6-1) ... 311s Setting up r-cran-ps (1.9.0-1) ... 311s Setting up r-cran-xml (3.99-0.18-1) ... 311s Setting up r-cran-commonmark (1.9.2-2) ... 311s Setting up r-cran-r6 (2.6.1-1) ... 311s Setting up r-cran-pkgkitten (0.2.4-1) ... 311s Setting up r-cran-magrittr (2.0.3-1) ... 311s Setting up r-cran-rappdirs (0.3.3-1) ... 311s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 311s Setting up r-cran-littler (0.3.20-2) ... 311s Setting up r-cran-bh (1.84.0-1) ... 311s Setting up r-cran-ncdf4 (1.23-1build1) ... 311s Setting up r-cran-fs (1.6.5+dfsg-1) ... 311s Setting up r-cran-rcpp (1.0.14-1) ... 311s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 311s Setting up r-cran-brio (1.1.5-1) ... 311s Setting up r-cran-diffobj (0.3.5-1) ... 311s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 311s Setting up r-bioc-biocgenerics (0.52.0-2) ... 311s Setting up r-cran-rlang (1.1.5-1) ... 311s Setting up littler (0.3.20-2) ... 311s Setting up r-cran-bio3d (2.4-5-1) ... 311s Setting up r-cran-uuid (1.2-1-1) ... 311s Setting up r-cran-xfun (0.51+dfsg-1) ... 311s Setting up r-cran-sys (3.4.3-1) ... 311s Setting up r-cran-withr (3.0.2+dfsg-1) ... 311s Setting up r-cran-processx (3.8.6-1) ... 311s Setting up r-cran-mime (0.12-2) ... 311s Setting up r-cran-praise (1.0.0-4build1) ... 311s Setting up r-cran-base64enc (0.1-3-3) ... 311s Setting up r-cran-digest (0.6.37-1) ... 311s Setting up r-cran-yaml (2.3.10-1) ... 311s Setting up r-cran-evaluate (1.0.3-1) ... 311s Setting up r-cran-bigmemory (4.6.4-1ubuntu1) ... 311s Setting up r-cran-highr (0.11+dfsg-1) ... 311s Setting up r-cran-glue (1.8.0-1) ... 311s Setting up r-cran-xtable (1:1.8-4-2) ... 311s Setting up r-cran-cli (3.6.4-1) ... 311s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 311s Setting up r-cran-bitops (1.0-9-1) ... 311s Setting up r-cran-rprojroot (2.0.4-2) ... 311s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 311s Setting up r-cran-askpass (1.2.1-1) ... 311s Setting up r-cran-fastmap (1.2.0-1) ... 311s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 311s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 311s Setting up r-cran-cpp11 (0.5.2-1) ... 311s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 311s Setting up r-cran-waldo (0.6.1-2) ... 311s Setting up r-cran-later (1.4.1+dfsg-1) ... 311s Setting up r-cran-matrix (1.7-3-1) ... 311s Setting up r-cran-htmltools (0.5.8.1-1) ... 311s Setting up r-cran-tinytex (0.56-1) ... 311s Setting up r-cran-knitr (1.49+dfsg-1) ... 311s Setting up r-cran-cachem (1.1.0-1) ... 311s Setting up r-cran-sass (0.4.9+dfsg-1) ... 311s Setting up r-bioc-iranges (2.40.1-2) ... 311s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 311s Setting up r-cran-vctrs (0.6.5-1) ... 311s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 311s Setting up r-cran-callr (3.7.6-1) ... 311s Setting up r-cran-desc (1.4.3-1) ... 311s Setting up r-cran-fontawesome (0.5.3-1) ... 311s Setting up r-cran-igraph (2.1.4-1) ... 311s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 311s Setting up r-cran-httr (1.4.7+dfsg-1) ... 311s Setting up r-cran-memoise (2.0.1-1) ... 311s Setting up r-cran-promises (1.3.2+dfsg-1) ... 311s Setting up r-bioc-xvector (0.46.0-2) ... 311s Setting up r-cran-pkgbuild (1.4.6-1) ... 311s Setting up r-cran-pkgload (1.4.0-1) ... 311s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 311s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 311s Setting up r-cran-testthat (3.2.3-1) ... 311s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 311s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 311s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 311s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 311s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 311s Processing triggers for libc-bin (2.41-1ubuntu2) ... 311s Processing triggers for man-db (2.13.0-1) ... 312s Processing triggers for install-info (7.1.1-1) ... 313s autopkgtest [17:59:52]: test run-unit-test: [----------------------- 313s BEGIN TEST testthat.R 313s 313s R version 4.4.3 (2025-02-28) -- "Trophy Case" 313s Copyright (C) 2025 The R Foundation for Statistical Computing 313s Platform: s390x-ibm-linux-gnu 313s 313s R is free software and comes with ABSOLUTELY NO WARRANTY. 313s You are welcome to redistribute it under certain conditions. 313s Type 'license()' or 'licence()' for distribution details. 313s 313s R is a collaborative project with many contributors. 313s Type 'contributors()' for more information and 313s 'citation()' on how to cite R or R packages in publications. 313s 313s Type 'demo()' for some demos, 'help()' for on-line help, or 313s 'help.start()' for an HTML browser interface to help. 313s Type 'q()' to quit R. 313s 313s > library(testthat) 314s > test_check("bio3d") 314s Loading required package: bio3d 319s [ FAIL 0 | WARN 0 | SKIP 29 | PASS 174 ] 319s 319s == Skipped tests (29) ========================================================== 319s * On CRAN (29): 'test-aanma.R:5:3', 'test-aanma.pdbs.R:10:3', 319s 'test-clean.pdb.R:24:3', 'test-cmap.R:20:3', 'test-cna.R:5:3', 319s 'test-core.find.R:5:3', 'test-dccm.R:27:3', 'test-dccm.R:47:3', 319s 'test-dssp.R:4:3', 'test-fitting.R:64:3', 'test-fitting.R:91:4', 319s 'test-fitting.R:116:4', 'test-get.pdb.R:4:3', 'test-get.pdb.R:24:3', 319s 'test-get.seq.R:4:3', 'test-mol2.R:34:3', 'test-mol2.R:49:3', 319s 'test-mol2.R:82:3', 'test-nma.pdbs.R:5:3', 'test-pdb.annotate.R:5:3', 319s 'test-pdbsplit.R:5:3', 'test-read.all.R:6:3', 'test-read.cif.R:5:3', 319s 'test-read.cif.R:49:3', 'test-read.ncdf.R:4:4', 'test-read.pdb.R:43:3', 319s 'test-read.pdb.R:121:3', 'test-read.pdb.R:141:3', 'test-seqaln.R:5:3' 319s 319s [ FAIL 0 | WARN 0 | SKIP 29 | PASS 174 ] 319s > 319s autopkgtest [17:59:58]: test run-unit-test: -----------------------] 320s autopkgtest [17:59:59]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 320s run-unit-test PASS 320s autopkgtest [17:59:59]: test pkg-r-autopkgtest: preparing testbed 434s autopkgtest [18:01:53]: testbed dpkg architecture: s390x 434s autopkgtest [18:01:53]: testbed apt version: 2.9.33 435s autopkgtest [18:01:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup 435s autopkgtest [18:01:54]: testbed release detected to be: plucky 436s autopkgtest [18:01:55]: updating testbed package index (apt update) 436s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 436s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 436s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 436s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 437s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 437s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 437s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 437s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 437s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 437s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 437s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 437s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 437s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 437s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 437s Fetched 1073 kB in 1s (1110 kB/s) 438s Reading package lists... 438s + lsb_release --codename --short 438s + RELEASE=plucky 438s + cat 438s + [ plucky != trusty ] 438s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade 438s Reading package lists... 438s Building dependency tree... 438s Reading state information... 438s Calculating upgrade... 438s Calculating upgrade... 439s The following packages were automatically installed and are no longer required: 439s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 439s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 439s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 439s linux-tools-6.11.0-8-generic 439s Use 'sudo apt autoremove' to remove them. 439s The following packages will be upgraded: 439s pinentry-curses python3-jinja2 strace 439s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 439s Need to get 652 kB of archives. 439s After this operation, 27.6 kB of additional disk space will be used. 439s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 439s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 439s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 439s Fetched 652 kB in 1s (1007 kB/s) 440s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 440s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 440s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 440s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 440s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 440s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 440s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 440s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 440s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 440s Setting up strace (6.13+ds-1ubuntu1) ... 440s Processing triggers for man-db (2.13.0-1) ... 440s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref 440s + /usr/lib/apt/apt-helper analyze-pattern ?true 440s + uname -r 440s + sed s/\./\\./g 440s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.* 440s + apt list ?obsolete 440s + tail -n+2 440s + cut -d/ -f1 440s + grep -v ^linux-.*6\.14\.0-10-generic.* 440s + obsolete_pkgs=linux-headers-6.11.0-8-generic 440s linux-headers-6.11.0-8 440s linux-modules-6.11.0-8-generic 440s linux-tools-6.11.0-8-generic 440s linux-tools-6.11.0-8 440s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8 440s Reading package lists... 441s Building dependency tree... 441s Reading state information... 441s Solving dependencies... 441s The following packages will be REMOVED: 441s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 441s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 441s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 441s linux-tools-6.11.0-8-generic* 441s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 441s After this operation, 167 MB disk space will be freed. 441s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 441s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 441s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 441s Removing libpython3.12t64:s390x (3.12.9-1) ... 441s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 441s Removing libnsl2:s390x (1.3.0-3build3) ... 441s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 441s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 441s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 442s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 442s Processing triggers for libc-bin (2.41-1ubuntu1) ... 442s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 442s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 442s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 442s + grep -q trusty /etc/lsb-release 442s + [ ! -d /usr/share/doc/unattended-upgrades ] 442s + [ ! -d /usr/share/doc/lxd ] 442s + [ ! -d /usr/share/doc/lxd-client ] 442s + [ ! -d /usr/share/doc/snapd ] 442s + type iptables 442s + cat 442s + chmod 755 /etc/rc.local 442s + . /etc/rc.local 442s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu 442s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP 442s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP 442s + uname -m 442s + [ s390x = ppc64le ] 442s + [ -d /run/systemd/system ] 442s + systemd-detect-virt --quiet --vm 442s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/ 442s + cat 442s + grep -q lz4 /etc/initramfs-tools/initramfs.conf 442s + echo COMPRESS=lz4 442s autopkgtest [18:02:01]: upgrading testbed (apt dist-upgrade and autopurge) 442s Reading package lists... 442s Building dependency tree... 442s Reading state information... 443s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 443s Starting 2 pkgProblemResolver with broken count: 0 443s Done 443s Entering ResolveByKeep 443s 443s Calculating upgrade... 443s The following packages will be upgraded: 443s libc-bin libc-dev-bin libc6 libc6-dev locales 443s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 443s Need to get 9512 kB of archives. 443s After this operation, 8192 B of additional disk space will be used. 443s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 444s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 444s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 445s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 446s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 447s Preconfiguring packages ... 447s Fetched 9512 kB in 4s (2434 kB/s) 447s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 447s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 447s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 447s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 447s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 447s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 448s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 448s Setting up libc6:s390x (2.41-1ubuntu2) ... 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 448s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 448s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 448s Setting up libc-bin (2.41-1ubuntu2) ... 448s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 448s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 448s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 448s Setting up locales (2.41-1ubuntu2) ... 448s Generating locales (this might take a while)... 449s en_US.UTF-8... done 449s Generation complete. 449s Setting up libc-dev-bin (2.41-1ubuntu2) ... 449s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 449s Processing triggers for man-db (2.13.0-1) ... 450s Processing triggers for systemd (257.3-1ubuntu3) ... 451s Reading package lists... 451s Building dependency tree... 451s Reading state information... 451s Starting pkgProblemResolver with broken count: 0 451s Starting 2 pkgProblemResolver with broken count: 0 451s Done 451s Solving dependencies... 451s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 451s autopkgtest [18:02:10]: rebooting testbed after setup commands that affected boot 474s Reading package lists... 474s Building dependency tree... 474s Reading state information... 475s Starting pkgProblemResolver with broken count: 0 475s Starting 2 pkgProblemResolver with broken count: 0 475s Done 475s The following NEW packages will be installed: 475s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 475s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 475s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-14 475s g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 gcc-14-s390x-linux-gnu 475s gcc-s390x-linux-gnu gfortran gfortran-14 gfortran-14-s390x-linux-gnu 475s gfortran-s390x-linux-gnu icu-devtools javascript-common libaec0 libamd3 475s libasan8 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 475s libcairo2 libcc1-0 libcolamd3 libdatrie1 libdeflate-dev libdeflate0 475s libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev libgfortran5 475s libglpk40 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-310 libhdf5-hl-310 475s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 475s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 475s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 475s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 475s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 475s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 475s liblapack-dev liblapack3 libltdl7 liblua5.4-0 liblzma-dev libmpc3 475s libncurses-dev libnetcdf22 libpango-1.0-0 libpangocairo-1.0-0 475s libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 475s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 475s libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsuitesparseconfig7 475s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 475s libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 475s libxt6t64 littler node-bootstrap-sass node-html5shiv node-normalize.css 475s pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 475s r-base-dev r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 475s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-ucsc.utils 475s r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-base64enc r-cran-bh 475s r-cran-bigmemory r-cran-bigmemory.sri r-cran-bio3d r-cran-bitops r-cran-brio 475s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark 475s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-desc r-cran-diffobj 475s r-cran-digest r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 475s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-httr 475s r-cran-igraph r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later 475s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 475s r-cran-memoise r-cran-mime r-cran-ncdf4 r-cran-openssl r-cran-pkgbuild 475s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise 475s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 475s r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 475s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-sys r-cran-testthat 475s r-cran-tinytex r-cran-uuid r-cran-vctrs r-cran-waldo r-cran-withr 475s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml unzip x11-common xdg-utils 475s zip zlib1g-dev 475s 0 upgraded, 215 newly installed, 0 to remove and 0 not upgraded. 475s Need to get 283 MB of archives. 475s After this operation, 1102 MB of additional disk space will be used. 475s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 476s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 476s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 481s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 481s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 481s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 481s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 481s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 481s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 481s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 482s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 482s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 482s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 488s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 488s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 488s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 488s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 489s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 493s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 493s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 493s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 493s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 493s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 493s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 493s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 493s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 493s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 493s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 493s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 493s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 493s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 493s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 494s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 494s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 495s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 498s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 498s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 498s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 498s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 498s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B] 498s Get:41 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 498s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libsuitesparseconfig7 s390x 1:7.8.3+dfsg-3 [13.2 kB] 498s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x libamd3 s390x 1:7.8.3+dfsg-3 [35.1 kB] 498s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 498s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 498s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB] 501s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 501s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 501s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 501s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 501s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 501s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 501s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 501s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libcolamd3 s390x 1:7.8.3+dfsg-3 [23.4 kB] 501s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 501s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 501s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 501s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB] 501s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libglpk40 s390x 5.0-1build2 [406 kB] 502s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 502s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 502s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 502s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 502s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 502s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 502s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 502s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 506s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 506s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 506s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 506s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 506s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 506s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 506s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 506s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 506s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 506s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 506s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 506s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 506s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 506s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 506s Get:82 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 506s Get:83 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 506s Get:84 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 506s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 506s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 506s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 507s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 509s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 509s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 509s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf22 s390x 1:4.9.3-1 [533 kB] 509s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 509s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 509s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 509s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 509s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 509s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 509s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 509s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 509s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 509s Get:101 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 509s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 510s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 510s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 510s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 511s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 511s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 511s Get:108 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 511s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 511s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 511s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 511s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 511s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 511s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 511s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 512s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 512s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 512s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 512s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 512s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 523s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 523s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 523s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 523s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 523s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 523s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 523s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 545s Get:128 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 545s Get:129 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 545s Get:130 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 545s Get:131 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 545s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 545s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 545s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 546s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 546s Get:136 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 547s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 547s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 547s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 547s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 548s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 548s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 548s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 548s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 548s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 548s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 548s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 548s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 553s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 556s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 556s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 564s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 564s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 564s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 564s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 564s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 565s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-uuid s390x 1.2-1-1 [49.3 kB] 565s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bigmemory s390x 4.6.4-1ubuntu1 [529 kB] 566s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bio3d s390x 2.4-5-1 [3027 kB] 568s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 568s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB] 568s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 569s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 569s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 569s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 569s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 569s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 569s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 570s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 570s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 570s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 570s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 571s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 571s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 571s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB] 574s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB] 575s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB] 575s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB] 575s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 575s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 576s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 576s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 577s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 577s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB] 577s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB] 578s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 578s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 578s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 578s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 578s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 579s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 579s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 583s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 583s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 584s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-igraph s390x 2.1.4-1 [5311 kB] 587s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 587s Get:197 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 589s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 590s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ncdf4 s390x 1.23-1build1 [279 kB] 590s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB] 590s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB] 590s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 590s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB] 591s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 591s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 592s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB] 592s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 592s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 592s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 592s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 592s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB] 595s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 597s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB] 597s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB] 598s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 600s Preconfiguring packages ... 600s Fetched 283 MB in 2min 5s (2277 kB/s) 600s Selecting previously unselected package libisl23:s390x. 600s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 600s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 600s Unpacking libisl23:s390x (0.27-1) ... 600s Selecting previously unselected package libmpc3:s390x. 600s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 600s Unpacking libmpc3:s390x (1.3.1-1build2) ... 600s Selecting previously unselected package cpp-14-s390x-linux-gnu. 600s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 600s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 600s Selecting previously unselected package cpp-14. 600s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 600s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 600s Selecting previously unselected package cpp-s390x-linux-gnu. 600s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 600s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 600s Selecting previously unselected package cpp. 600s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 600s Unpacking cpp (4:14.2.0-1ubuntu1) ... 600s Selecting previously unselected package libcc1-0:s390x. 600s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 600s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 600s Selecting previously unselected package libgomp1:s390x. 600s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 600s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 600s Selecting previously unselected package libitm1:s390x. 600s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 600s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 600s Selecting previously unselected package libasan8:s390x. 600s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 600s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 600s Selecting previously unselected package libubsan1:s390x. 600s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 600s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 600s Selecting previously unselected package libgcc-14-dev:s390x. 600s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 600s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 600s Selecting previously unselected package gcc-14-s390x-linux-gnu. 600s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 600s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package gcc-14. 601s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 601s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package gcc-s390x-linux-gnu. 601s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 601s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 601s Selecting previously unselected package gcc. 601s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 601s Unpacking gcc (4:14.2.0-1ubuntu1) ... 601s Selecting previously unselected package libstdc++-14-dev:s390x. 601s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 601s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package g++-14-s390x-linux-gnu. 601s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 601s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package g++-14. 601s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 601s Unpacking g++-14 (14.2.0-17ubuntu3) ... 601s Selecting previously unselected package g++-s390x-linux-gnu. 601s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 601s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 601s Selecting previously unselected package g++. 601s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 601s Unpacking g++ (4:14.2.0-1ubuntu1) ... 601s Selecting previously unselected package build-essential. 601s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 601s Unpacking build-essential (12.10ubuntu1) ... 601s Selecting previously unselected package dctrl-tools. 601s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 601s Unpacking dctrl-tools (2.24-3build3) ... 601s Selecting previously unselected package libfreetype6:s390x. 601s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 601s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 601s Selecting previously unselected package fonts-dejavu-mono. 601s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 601s Unpacking fonts-dejavu-mono (2.37-8) ... 601s Selecting previously unselected package fonts-dejavu-core. 601s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 601s Unpacking fonts-dejavu-core (2.37-8) ... 601s Selecting previously unselected package fontconfig-config. 601s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 601s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 601s Selecting previously unselected package libfontconfig1:s390x. 601s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 601s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 601s Selecting previously unselected package fontconfig. 601s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 601s Unpacking fontconfig (2.15.0-2ubuntu1) ... 601s Selecting previously unselected package fonts-font-awesome. 601s Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 601s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 601s Selecting previously unselected package fonts-glyphicons-halflings. 601s Preparing to unpack .../030-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 601s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 601s Selecting previously unselected package fonts-mathjax. 601s Preparing to unpack .../031-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 601s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 603s Selecting previously unselected package libgfortran5:s390x. 603s Preparing to unpack .../032-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 603s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 603s Selecting previously unselected package libgfortran-14-dev:s390x. 603s Preparing to unpack .../033-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 603s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 603s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 603s Preparing to unpack .../034-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 603s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 603s Selecting previously unselected package gfortran-14. 603s Preparing to unpack .../035-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 603s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 603s Selecting previously unselected package gfortran-s390x-linux-gnu. 603s Preparing to unpack .../036-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 603s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 603s Selecting previously unselected package gfortran. 603s Preparing to unpack .../037-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 603s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 603s Selecting previously unselected package icu-devtools. 603s Preparing to unpack .../038-icu-devtools_76.1-1ubuntu2_s390x.deb ... 603s Unpacking icu-devtools (76.1-1ubuntu2) ... 603s Selecting previously unselected package javascript-common. 603s Preparing to unpack .../039-javascript-common_12_all.deb ... 603s Unpacking javascript-common (12) ... 603s Selecting previously unselected package libaec0:s390x. 603s Preparing to unpack .../040-libaec0_1.1.3-1_s390x.deb ... 603s Unpacking libaec0:s390x (1.1.3-1) ... 603s Selecting previously unselected package libsuitesparseconfig7:s390x. 603s Preparing to unpack .../041-libsuitesparseconfig7_1%3a7.8.3+dfsg-3_s390x.deb ... 603s Unpacking libsuitesparseconfig7:s390x (1:7.8.3+dfsg-3) ... 603s Selecting previously unselected package libamd3:s390x. 603s Preparing to unpack .../042-libamd3_1%3a7.8.3+dfsg-3_s390x.deb ... 603s Unpacking libamd3:s390x (1:7.8.3+dfsg-3) ... 603s Selecting previously unselected package libblas3:s390x. 603s Preparing to unpack .../043-libblas3_3.12.1-2_s390x.deb ... 603s Unpacking libblas3:s390x (3.12.1-2) ... 603s Selecting previously unselected package libblas-dev:s390x. 603s Preparing to unpack .../044-libblas-dev_3.12.1-2_s390x.deb ... 603s Unpacking libblas-dev:s390x (3.12.1-2) ... 603s Selecting previously unselected package libboost1.83-dev:s390x. 603s Preparing to unpack .../045-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ... 603s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 603s Selecting previously unselected package libboost-dev:s390x. 603s Preparing to unpack .../046-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 603s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 603s Selecting previously unselected package libbz2-dev:s390x. 603s Preparing to unpack .../047-libbz2-dev_1.0.8-6_s390x.deb ... 603s Unpacking libbz2-dev:s390x (1.0.8-6) ... 603s Selecting previously unselected package libpixman-1-0:s390x. 603s Preparing to unpack .../048-libpixman-1-0_0.44.0-3_s390x.deb ... 603s 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previously unselected package libdatrie1:s390x. 603s Preparing to unpack .../054-libdatrie1_0.2.13-3build1_s390x.deb ... 603s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 603s Selecting previously unselected package libdeflate0:s390x. 603s Preparing to unpack .../055-libdeflate0_1.23-1_s390x.deb ... 603s Unpacking libdeflate0:s390x (1.23-1) ... 603s Selecting previously unselected package libdeflate-dev:s390x. 603s Preparing to unpack .../056-libdeflate-dev_1.23-1_s390x.deb ... 603s Unpacking libdeflate-dev:s390x (1.23-1) ... 603s Selecting previously unselected package libltdl7:s390x. 603s Preparing to unpack .../057-libltdl7_2.5.4-4_s390x.deb ... 603s Unpacking libltdl7:s390x (2.5.4-4) ... 603s Selecting previously unselected package libglpk40:s390x. 603s Preparing to unpack .../058-libglpk40_5.0-1build2_s390x.deb ... 603s Unpacking libglpk40:s390x (5.0-1build2) ... 603s Selecting previously unselected package libgraphite2-3:s390x. 603s Preparing to unpack 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Unpacking x11-common (1:7.7+23ubuntu3) ... 603s Selecting previously unselected package libice6:s390x. 603s Preparing to unpack .../065-libice6_2%3a1.1.1-1_s390x.deb ... 603s Unpacking libice6:s390x (2:1.1.1-1) ... 603s Selecting previously unselected package libicu-dev:s390x. 603s Preparing to unpack .../066-libicu-dev_76.1-1ubuntu2_s390x.deb ... 603s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 603s Selecting previously unselected package libjpeg-turbo8:s390x. 603s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 603s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 603s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 603s Preparing to unpack .../068-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 603s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 603s Selecting previously unselected package libjpeg8:s390x. 603s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_s390x.deb ... 603s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 603s 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Unpacking libnetcdf22:s390x (1:4.9.3-1) ... 604s Selecting previously unselected package libthai-data. 604s Preparing to unpack .../091-libthai-data_0.1.29-2build1_all.deb ... 604s Unpacking libthai-data (0.1.29-2build1) ... 604s Selecting previously unselected package libthai0:s390x. 604s Preparing to unpack .../092-libthai0_0.1.29-2build1_s390x.deb ... 604s Unpacking libthai0:s390x (0.1.29-2build1) ... 604s Selecting previously unselected package libpango-1.0-0:s390x. 604s Preparing to unpack .../093-libpango-1.0-0_1.56.2-1_s390x.deb ... 604s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 604s Selecting previously unselected package libpangoft2-1.0-0:s390x. 604s Preparing to unpack .../094-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 604s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 604s Selecting previously unselected package libpangocairo-1.0-0:s390x. 604s Preparing to unpack .../095-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 604s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 604s Selecting previously unselected package libpaper2:s390x. 604s Preparing to unpack .../096-libpaper2_2.2.5-0.3_s390x.deb ... 604s Unpacking libpaper2:s390x (2.2.5-0.3) ... 604s Selecting previously unselected package libpaper-utils. 604s Preparing to unpack .../097-libpaper-utils_2.2.5-0.3_s390x.deb ... 604s Unpacking libpaper-utils (2.2.5-0.3) ... 604s Selecting previously unselected package libpcre2-16-0:s390x. 604s Preparing to unpack .../098-libpcre2-16-0_10.45-1_s390x.deb ... 604s Unpacking libpcre2-16-0:s390x (10.45-1) ... 604s Selecting previously unselected package libpcre2-32-0:s390x. 604s Preparing to unpack .../099-libpcre2-32-0_10.45-1_s390x.deb ... 604s Unpacking libpcre2-32-0:s390x (10.45-1) ... 604s Selecting previously unselected package libpcre2-posix3:s390x. 604s Preparing to unpack .../100-libpcre2-posix3_10.45-1_s390x.deb ... 604s Unpacking libpcre2-posix3:s390x (10.45-1) ... 604s Selecting previously unselected package libpcre2-dev:s390x. 604s Preparing to 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package libxft2:s390x. 604s Preparing to unpack .../112-libxft2_2.3.6-1build1_s390x.deb ... 604s Unpacking libxft2:s390x (2.3.6-1build1) ... 604s Selecting previously unselected package libxss1:s390x. 604s Preparing to unpack .../113-libxss1_1%3a1.2.3-1build3_s390x.deb ... 604s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 604s Selecting previously unselected package libtk8.6:s390x. 604s Preparing to unpack .../114-libtk8.6_8.6.16-1_s390x.deb ... 604s Unpacking libtk8.6:s390x (8.6.16-1) ... 604s Selecting previously unselected package libxt6t64:s390x. 604s Preparing to unpack .../115-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 604s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 604s Selecting previously unselected package zip. 604s Preparing to unpack .../116-zip_3.0-14ubuntu2_s390x.deb ... 604s Unpacking zip (3.0-14ubuntu2) ... 604s Selecting previously unselected package unzip. 604s Preparing to unpack .../117-unzip_6.0-28ubuntu6_s390x.deb ... 604s Unpacking unzip (6.0-28ubuntu6) 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Unpacking node-html5shiv (3.7.3+dfsg-5) ... 604s Selecting previously unselected package node-normalize.css. 604s Preparing to unpack .../124-node-normalize.css_8.0.1-5_all.deb ... 604s Unpacking node-normalize.css (8.0.1-5) ... 604s Selecting previously unselected package pandoc-data. 604s Preparing to unpack .../125-pandoc-data_3.1.11.1-3build1_all.deb ... 604s Unpacking pandoc-data (3.1.11.1-3build1) ... 604s Selecting previously unselected package pandoc. 604s Preparing to unpack .../126-pandoc_3.1.11.1+ds-2_s390x.deb ... 604s Unpacking pandoc (3.1.11.1+ds-2) ... 606s Selecting previously unselected package liblzma-dev:s390x. 606s Preparing to unpack .../127-liblzma-dev_5.6.4-1_s390x.deb ... 606s Unpacking liblzma-dev:s390x (5.6.4-1) ... 606s Selecting previously unselected package pkgconf-bin. 606s Preparing to unpack .../128-pkgconf-bin_1.8.1-4_s390x.deb ... 606s Unpacking pkgconf-bin (1.8.1-4) ... 606s Selecting previously unselected package pkgconf:s390x. 606s Preparing to unpack .../129-pkgconf_1.8.1-4_s390x.deb ... 606s Unpacking pkgconf:s390x (1.8.1-4) ... 606s Selecting previously unselected package libtirpc-dev:s390x. 606s Preparing to unpack .../130-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 606s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 606s Selecting previously unselected package r-base-dev. 606s Preparing to unpack .../131-r-base-dev_4.4.3-1_all.deb ... 606s Unpacking r-base-dev (4.4.3-1) ... 606s Selecting previously unselected package pkg-r-autopkgtest. 606s Preparing to unpack .../132-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 606s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 606s Selecting previously unselected package r-bioc-biocgenerics. 606s Preparing to unpack .../133-r-bioc-biocgenerics_0.52.0-2_all.deb ... 606s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 606s Selecting previously unselected package r-bioc-s4vectors. 606s Preparing to unpack .../134-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 606s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 606s Selecting previously unselected package r-bioc-iranges. 606s Preparing to unpack .../135-r-bioc-iranges_2.40.1-2_s390x.deb ... 606s Unpacking r-bioc-iranges (2.40.1-2) ... 606s Selecting previously unselected package r-bioc-zlibbioc. 606s Preparing to unpack .../136-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 606s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 606s Selecting previously unselected package r-bioc-xvector. 606s Preparing to unpack .../137-r-bioc-xvector_0.46.0-2_s390x.deb ... 606s Unpacking r-bioc-xvector (0.46.0-2) ... 606s Selecting previously unselected package r-cran-curl. 606s Preparing to unpack .../138-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 606s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 606s Selecting previously unselected package r-cran-jsonlite. 606s Preparing to unpack .../139-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 606s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 606s Selecting previously unselected package r-cran-mime. 606s Preparing to unpack .../140-r-cran-mime_0.12-2_s390x.deb ... 606s Unpacking r-cran-mime (0.12-2) ... 606s Selecting previously unselected package r-cran-sys. 606s Preparing to unpack .../141-r-cran-sys_3.4.3-1_s390x.deb ... 606s Unpacking r-cran-sys (3.4.3-1) ... 606s Selecting previously unselected package r-cran-askpass. 606s Preparing to unpack .../142-r-cran-askpass_1.2.1-1_s390x.deb ... 606s Unpacking r-cran-askpass (1.2.1-1) ... 606s Selecting previously unselected package r-cran-openssl. 606s Preparing to unpack .../143-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 606s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 606s Selecting previously unselected package r-cran-r6. 606s Preparing to unpack .../144-r-cran-r6_2.6.1-1_all.deb ... 606s Unpacking r-cran-r6 (2.6.1-1) ... 606s Selecting previously unselected package r-cran-httr. 606s Preparing to unpack .../145-r-cran-httr_1.4.7+dfsg-1_all.deb ... 606s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 606s Selecting previously unselected package r-bioc-ucsc.utils. 606s Preparing to unpack .../146-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 606s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 606s Selecting previously unselected package r-bioc-genomeinfodbdata. 606s Preparing to unpack .../147-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 606s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 606s Selecting previously unselected package r-bioc-genomeinfodb. 606s Preparing to unpack .../148-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 606s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 606s Selecting previously unselected package r-cran-crayon. 606s Preparing to unpack .../149-r-cran-crayon_1.5.3-1_all.deb ... 606s Unpacking r-cran-crayon (1.5.3-1) ... 606s Selecting previously unselected package r-bioc-biostrings. 606s Preparing to unpack .../150-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 606s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 606s Selecting previously unselected package r-cran-base64enc. 606s Preparing to unpack .../151-r-cran-base64enc_0.1-3-3_s390x.deb ... 606s Unpacking r-cran-base64enc (0.1-3-3) ... 606s Selecting previously unselected package r-cran-bh. 606s Preparing to unpack .../152-r-cran-bh_1.84.0-1_all.deb ... 606s Unpacking r-cran-bh (1.84.0-1) ... 606s Selecting previously unselected package r-cran-bigmemory.sri. 606s Preparing to unpack .../153-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 606s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 606s Selecting previously unselected package r-cran-pkgkitten. 606s Preparing to unpack .../154-r-cran-pkgkitten_0.2.4-1_all.deb ... 606s Unpacking r-cran-pkgkitten (0.2.4-1) ... 606s Selecting previously unselected package r-cran-rcpp. 606s Preparing to unpack .../155-r-cran-rcpp_1.0.14-1_s390x.deb ... 606s Unpacking r-cran-rcpp (1.0.14-1) ... 606s Selecting previously unselected package r-cran-uuid. 606s Preparing to unpack .../156-r-cran-uuid_1.2-1-1_s390x.deb ... 606s Unpacking r-cran-uuid (1.2-1-1) ... 606s Selecting previously unselected package r-cran-bigmemory. 606s Preparing to unpack .../157-r-cran-bigmemory_4.6.4-1ubuntu1_s390x.deb ... 606s Unpacking r-cran-bigmemory (4.6.4-1ubuntu1) ... 606s Selecting previously unselected package r-cran-bio3d. 606s Preparing to unpack .../158-r-cran-bio3d_2.4-5-1_s390x.deb ... 606s Unpacking r-cran-bio3d (2.4-5-1) ... 606s Selecting previously unselected package r-cran-bitops. 606s Preparing to unpack .../159-r-cran-bitops_1.0-9-1_s390x.deb ... 606s Unpacking r-cran-bitops (1.0-9-1) ... 606s Selecting previously unselected package r-cran-brio. 606s Preparing to unpack .../160-r-cran-brio_1.1.5-1_s390x.deb ... 606s Unpacking r-cran-brio (1.1.5-1) ... 606s Selecting previously unselected package r-cran-rlang. 606s Preparing to unpack .../161-r-cran-rlang_1.1.5-1_s390x.deb ... 606s Unpacking r-cran-rlang (1.1.5-1) ... 606s Selecting previously unselected package r-cran-fastmap. 606s Preparing to unpack .../162-r-cran-fastmap_1.2.0-1_s390x.deb ... 606s Unpacking r-cran-fastmap (1.2.0-1) ... 606s Selecting previously unselected package r-cran-cachem. 606s Preparing to unpack .../163-r-cran-cachem_1.1.0-1_s390x.deb ... 606s Unpacking r-cran-cachem (1.1.0-1) ... 606s Selecting previously unselected package r-cran-digest. 606s Preparing to unpack .../164-r-cran-digest_0.6.37-1_s390x.deb ... 606s Unpacking r-cran-digest (0.6.37-1) ... 606s Selecting previously unselected package r-cran-htmltools. 606s Preparing to unpack .../165-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 606s Unpacking r-cran-htmltools (0.5.8.1-1) ... 606s Selecting previously unselected package r-cran-jquerylib. 606s Preparing to unpack .../166-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 606s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 606s Selecting previously unselected package r-cran-cli. 606s Preparing to unpack .../167-r-cran-cli_3.6.4-1_s390x.deb ... 606s Unpacking r-cran-cli (3.6.4-1) ... 606s Selecting previously unselected package r-cran-glue. 606s Preparing to unpack .../168-r-cran-glue_1.8.0-1_s390x.deb ... 606s Unpacking r-cran-glue (1.8.0-1) ... 606s Selecting previously unselected package r-cran-lifecycle. 606s Preparing to unpack .../169-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 606s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 606s Selecting previously unselected package r-cran-memoise. 606s Preparing to unpack .../170-r-cran-memoise_2.0.1-1_all.deb ... 606s Unpacking r-cran-memoise (2.0.1-1) ... 606s Selecting previously unselected package r-cran-fs. 606s Preparing to unpack .../171-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 606s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 606s Selecting previously unselected package r-cran-rappdirs. 606s Preparing to unpack .../172-r-cran-rappdirs_0.3.3-1_s390x.deb ... 606s Unpacking r-cran-rappdirs (0.3.3-1) ... 606s Selecting previously unselected package r-cran-sass. 606s Preparing to unpack .../173-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 606s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 606s Selecting previously unselected package r-cran-bslib. 606s Preparing to unpack .../174-r-cran-bslib_0.8.0+dfsg-1_all.deb ... 606s Unpacking r-cran-bslib (0.8.0+dfsg-1) ... 606s Selecting previously unselected package r-cran-ps. 606s Preparing to unpack .../175-r-cran-ps_1.9.0-1_s390x.deb ... 606s Unpacking r-cran-ps (1.9.0-1) ... 606s Selecting previously unselected package r-cran-processx. 606s Preparing to unpack .../176-r-cran-processx_3.8.6-1_s390x.deb ... 606s Unpacking r-cran-processx (3.8.6-1) ... 606s Selecting previously unselected package r-cran-callr. 606s Preparing to unpack .../177-r-cran-callr_3.7.6-1_all.deb ... 606s Unpacking r-cran-callr (3.7.6-1) ... 606s Selecting previously unselected package r-cran-commonmark. 606s Preparing to unpack .../178-r-cran-commonmark_1.9.2-2_s390x.deb ... 606s Unpacking r-cran-commonmark (1.9.2-2) ... 606s Selecting previously unselected package r-cran-cpp11. 606s Preparing to unpack .../179-r-cran-cpp11_0.5.2-1_all.deb ... 606s Unpacking r-cran-cpp11 (0.5.2-1) ... 606s Selecting previously unselected package r-cran-desc. 606s Preparing to unpack .../180-r-cran-desc_1.4.3-1_all.deb ... 606s Unpacking r-cran-desc (1.4.3-1) ... 607s Selecting previously unselected package r-cran-diffobj. 607s Preparing to unpack .../181-r-cran-diffobj_0.3.5-1_s390x.deb ... 607s Unpacking r-cran-diffobj (0.3.5-1) ... 607s Selecting previously unselected package r-cran-evaluate. 607s Preparing to unpack .../182-r-cran-evaluate_1.0.3-1_all.deb ... 607s Unpacking r-cran-evaluate (1.0.3-1) ... 607s Selecting previously unselected package r-cran-fontawesome. 607s Preparing to unpack .../183-r-cran-fontawesome_0.5.3-1_all.deb ... 607s Unpacking r-cran-fontawesome (0.5.3-1) ... 607s Selecting previously unselected package r-cran-xfun. 607s Preparing to unpack .../184-r-cran-xfun_0.51+dfsg-1_s390x.deb ... 607s Unpacking r-cran-xfun (0.51+dfsg-1) ... 607s Selecting previously unselected package r-cran-highr. 607s Preparing to unpack .../185-r-cran-highr_0.11+dfsg-1_all.deb ... 607s Unpacking r-cran-highr (0.11+dfsg-1) ... 607s Selecting previously unselected package r-cran-later. 607s Preparing to unpack .../186-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 607s Unpacking r-cran-later (1.4.1+dfsg-1) ... 607s Selecting previously unselected package r-cran-magrittr. 607s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_s390x.deb ... 607s Unpacking r-cran-magrittr (2.0.3-1) ... 607s Selecting previously unselected package r-cran-promises. 607s Preparing to unpack .../188-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 607s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 607s Selecting previously unselected package r-cran-httpuv. 607s Preparing to unpack .../189-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 607s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 607s Selecting previously unselected package r-cran-lattice. 607s Preparing to unpack .../190-r-cran-lattice_0.22-6-1_s390x.deb ... 607s Unpacking r-cran-lattice (0.22-6-1) ... 607s Selecting previously unselected package r-cran-matrix. 607s Preparing to unpack .../191-r-cran-matrix_1.7-3-1_s390x.deb ... 607s Unpacking r-cran-matrix (1.7-3-1) ... 607s Selecting previously unselected package r-cran-pkgconfig. 607s Preparing to unpack .../192-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 607s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 607s Selecting previously unselected package r-cran-vctrs. 607s Preparing to unpack .../193-r-cran-vctrs_0.6.5-1_s390x.deb ... 607s Unpacking r-cran-vctrs (0.6.5-1) ... 607s Selecting previously unselected package r-cran-igraph. 607s Preparing to unpack .../194-r-cran-igraph_2.1.4-1_s390x.deb ... 607s Unpacking r-cran-igraph (2.1.4-1) ... 607s Selecting previously unselected package r-cran-yaml. 607s Preparing to unpack .../195-r-cran-yaml_2.3.10-1_s390x.deb ... 607s Unpacking r-cran-yaml (2.3.10-1) ... 607s Selecting previously unselected package libjs-mathjax. 607s Preparing to unpack .../196-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 607s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 607s Selecting previously unselected package r-cran-knitr. 607s Preparing to unpack .../197-r-cran-knitr_1.49+dfsg-1_all.deb ... 607s Unpacking r-cran-knitr (1.49+dfsg-1) ... 607s Selecting previously unselected package r-cran-ncdf4. 607s Preparing to unpack .../198-r-cran-ncdf4_1.23-1build1_s390x.deb ... 607s Unpacking r-cran-ncdf4 (1.23-1build1) ... 607s Selecting previously unselected package r-cran-pkgbuild. 607s Preparing to unpack .../199-r-cran-pkgbuild_1.4.6-1_all.deb ... 607s Unpacking r-cran-pkgbuild (1.4.6-1) ... 607s Selecting previously unselected package r-cran-rprojroot. 607s Preparing to unpack .../200-r-cran-rprojroot_2.0.4-2_all.deb ... 607s Unpacking r-cran-rprojroot (2.0.4-2) ... 607s Selecting previously unselected package r-cran-withr. 607s Preparing to unpack .../201-r-cran-withr_3.0.2+dfsg-1_all.deb ... 607s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 607s Selecting previously unselected package r-cran-pkgload. 607s Preparing to unpack .../202-r-cran-pkgload_1.4.0-1_all.deb ... 607s Unpacking r-cran-pkgload (1.4.0-1) ... 607s Selecting previously unselected package r-cran-praise. 607s Preparing to unpack .../203-r-cran-praise_1.0.0-4build1_all.deb ... 607s Unpacking r-cran-praise (1.0.0-4build1) ... 607s Selecting previously unselected package r-cran-rcurl. 607s Preparing to unpack .../204-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 607s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 607s Selecting previously unselected package r-cran-tinytex. 607s Preparing to unpack .../205-r-cran-tinytex_0.56-1_all.deb ... 607s Unpacking r-cran-tinytex (0.56-1) ... 607s Selecting previously unselected package libjs-modernizr. 607s Preparing to unpack .../206-libjs-modernizr_3.13.0-0.1_all.deb ... 607s Unpacking libjs-modernizr (3.13.0-0.1) ... 607s Selecting previously unselected package r-cran-xtable. 607s Preparing to unpack .../207-r-cran-xtable_1%3a1.8-4-2_all.deb ... 607s Unpacking r-cran-xtable (1:1.8-4-2) ... 607s Selecting previously unselected package r-cran-sourcetools. 607s Preparing to unpack .../208-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 607s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 607s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 607s Preparing to unpack .../209-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 607s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 607s Selecting previously unselected package r-cran-shiny. 607s Preparing to unpack .../210-r-cran-shiny_1.10.0+dfsg-2_all.deb ... 607s Unpacking r-cran-shiny (1.10.0+dfsg-2) ... 608s Selecting previously unselected package r-cran-rmarkdown. 608s Preparing to unpack .../211-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 608s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 608s Selecting previously unselected package r-cran-waldo. 608s Preparing to unpack .../212-r-cran-waldo_0.6.1-2_all.deb ... 608s Unpacking r-cran-waldo (0.6.1-2) ... 608s 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(10.45-1) ... 608s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 608s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 608s Setting up libsuitesparseconfig7:s390x (1:7.8.3+dfsg-3) ... 608s Setting up liblua5.4-0:s390x (5.4.7-1) ... 608s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 608s Setting up libthai-data (0.1.29-2build1) ... 608s Setting up node-bootstrap-sass (3.4.3-2) ... 608s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 608s Setting up libxss1:s390x (1:1.2.3-1build3) ... 608s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 608s Setting up libpaper2:s390x (2.2.5-0.3) ... 608s Setting up pandoc-data (3.1.11.1-3build1) ... 608s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 608s Setting up libisl23:s390x (0.27-1) ... 608s Setting up libdeflate-dev:s390x (1.23-1) ... 608s Setting up node-normalize.css (8.0.1-5) ... 608s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 608s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 608s Setting up xdg-utils (1.2.1-2ubuntu1) ... 608s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 608s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 608s Setting up libblas-dev:s390x (3.12.1-2) ... 608s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 608s Setting up libsz2:s390x (1.1.3-1) ... 608s Setting up dctrl-tools (2.24-3build3) ... 608s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 608s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 608s Setting up libbz2-dev:s390x (1.0.8-6) ... 608s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 608s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 608s Setting up libice6:s390x (2:1.1.1-1) ... 608s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 608s Setting up liblapack3:s390x (3.12.1-2) ... 608s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 608s Setting up libamd3:s390x (1:7.8.3+dfsg-3) ... 608s Setting up libpcre2-dev:s390x (10.45-1) ... 608s Setting up libcolamd3:s390x (1:7.8.3+dfsg-3) ... 608s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 608s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 608s Setting up libpng-dev:s390x (1.6.47-1) ... 608s Setting up libpaper-utils (2.2.5-0.3) ... 608s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 608s Setting up pkgconf:s390x (1.8.1-4) ... 608s Setting up libthai0:s390x (0.1.29-2build1) ... 608s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 608s Setting up pandoc (3.1.11.1+ds-2) ... 608s Setting up libglpk40:s390x (5.0-1build2) ... 608s Setting up liblapack-dev:s390x (3.12.1-2) ... 608s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 608s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 608s Setting up cpp-14 (14.2.0-17ubuntu3) ... 608s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 608s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 608s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 608s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 608s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 608s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 608s Setting up libsm6:s390x (2:1.2.4-1) ... 608s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 608s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 608s Setting up fontconfig (2.15.0-2ubuntu1) ... 610s Regenerating fonts cache... done. 610s Setting up libxft2:s390x (2.3.6-1build1) ... 610s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 610s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 610s Setting up libtk8.6:s390x (8.6.16-1) ... 610s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 610s Setting up libnetcdf22:s390x (1:4.9.3-1) ... 610s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 610s Setting up libcairo2:s390x (1.18.2-2) ... 610s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 610s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 610s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 610s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 610s Setting up cpp (4:14.2.0-1ubuntu1) ... 610s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ... 610s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 610s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 610s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 610s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 610s Setting up gcc-14 (14.2.0-17ubuntu3) ... 610s Setting up r-base-core (4.4.3-1) ... 610s Creating config file /etc/R/Renviron with new version 610s Setting up r-cran-crayon (1.5.3-1) ... 610s Setting up r-cran-sourcetools (0.1.7-1-1) ... 610s Setting up r-cran-lattice (0.22-6-1) ... 610s Setting up r-cran-ps (1.9.0-1) ... 610s Setting up r-cran-xml (3.99-0.18-1) ... 610s Setting up r-cran-commonmark (1.9.2-2) ... 610s Setting up g++-14 (14.2.0-17ubuntu3) ... 610s Setting up r-cran-r6 (2.6.1-1) ... 610s Setting up r-cran-pkgkitten (0.2.4-1) ... 610s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 610s Setting up r-cran-magrittr (2.0.3-1) ... 610s Setting up r-cran-rappdirs (0.3.3-1) ... 610s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 610s Setting up r-cran-littler (0.3.20-2) ... 610s Setting up r-cran-bh (1.84.0-1) ... 610s Setting up r-cran-ncdf4 (1.23-1build1) ... 610s Setting up r-cran-fs (1.6.5+dfsg-1) ... 610s Setting up r-cran-rcpp (1.0.14-1) ... 610s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 610s Setting up r-cran-brio (1.1.5-1) ... 610s Setting up r-cran-diffobj (0.3.5-1) ... 610s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 610s Setting up r-bioc-biocgenerics (0.52.0-2) ... 610s Setting up r-cran-rlang (1.1.5-1) ... 610s Setting up littler (0.3.20-2) ... 610s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 610s Setting up r-cran-bio3d (2.4-5-1) ... 610s Setting up r-cran-uuid (1.2-1-1) ... 610s Setting up r-cran-xfun (0.51+dfsg-1) ... 610s Setting up r-cran-sys (3.4.3-1) ... 610s Setting up r-cran-withr (3.0.2+dfsg-1) ... 610s Setting up r-cran-processx (3.8.6-1) ... 610s Setting up r-cran-mime (0.12-2) ... 610s Setting up r-cran-praise (1.0.0-4build1) ... 610s Setting up r-cran-base64enc (0.1-3-3) ... 610s Setting up r-cran-digest (0.6.37-1) ... 610s Setting up r-cran-yaml (2.3.10-1) ... 610s Setting up r-cran-evaluate (1.0.3-1) ... 610s Setting up r-cran-bigmemory (4.6.4-1ubuntu1) ... 610s Setting up r-cran-highr (0.11+dfsg-1) ... 610s Setting up r-cran-glue (1.8.0-1) ... 610s Setting up r-cran-xtable (1:1.8-4-2) ... 610s Setting up r-cran-cli (3.6.4-1) ... 610s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 610s Setting up r-cran-bitops (1.0-9-1) ... 610s Setting up r-cran-rprojroot (2.0.4-2) ... 610s Setting up gcc (4:14.2.0-1ubuntu1) ... 610s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 610s Setting up r-cran-askpass (1.2.1-1) ... 610s Setting up r-cran-fastmap (1.2.0-1) ... 610s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 610s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 610s Setting up r-cran-cpp11 (0.5.2-1) ... 610s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 610s Setting up r-cran-waldo (0.6.1-2) ... 610s Setting up r-cran-later (1.4.1+dfsg-1) ... 610s Setting up r-cran-matrix (1.7-3-1) ... 610s Setting up r-cran-htmltools (0.5.8.1-1) ... 610s Setting up r-cran-tinytex (0.56-1) ... 610s Setting up r-cran-knitr (1.49+dfsg-1) ... 610s Setting up g++ (4:14.2.0-1ubuntu1) ... 610s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 610s Setting up r-cran-cachem (1.1.0-1) ... 610s Setting up r-cran-sass (0.4.9+dfsg-1) ... 610s Setting up build-essential (12.10ubuntu1) ... 610s Setting up r-bioc-iranges (2.40.1-2) ... 610s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 610s Setting up r-cran-vctrs (0.6.5-1) ... 610s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 610s Setting up r-cran-callr (3.7.6-1) ... 610s Setting up r-cran-desc (1.4.3-1) ... 610s Setting up r-cran-fontawesome (0.5.3-1) ... 610s Setting up r-cran-igraph (2.1.4-1) ... 610s Setting up gfortran (4:14.2.0-1ubuntu1) ... 610s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 610s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 610s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 610s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 610s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 610s Setting up r-cran-httr (1.4.7+dfsg-1) ... 610s Setting up r-cran-memoise (2.0.1-1) ... 610s Setting up r-cran-promises (1.3.2+dfsg-1) ... 610s Setting up r-bioc-xvector (0.46.0-2) ... 610s Setting up r-cran-pkgbuild (1.4.6-1) ... 610s Setting up r-cran-pkgload (1.4.0-1) ... 610s Setting up r-base-dev (4.4.3-1) ... 610s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 610s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 610s Setting up r-cran-testthat (3.2.3-1) ... 610s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 610s Setting up r-cran-bslib (0.8.0+dfsg-1) ... 610s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 610s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 610s Setting up r-cran-shiny (1.10.0+dfsg-2) ... 610s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 610s Processing triggers for libc-bin (2.41-1ubuntu2) ... 610s Processing triggers for man-db (2.13.0-1) ... 611s Processing triggers for install-info (7.1.1-1) ... 615s autopkgtest [18:04:54]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 615s autopkgtest [18:04:54]: test pkg-r-autopkgtest: [----------------------- 615s Test: Try to load the R library bio3d 615s 615s R version 4.4.3 (2025-02-28) -- "Trophy Case" 615s Copyright (C) 2025 The R Foundation for Statistical Computing 615s Platform: s390x-ibm-linux-gnu 615s 615s R is free software and comes with ABSOLUTELY NO WARRANTY. 615s You are welcome to redistribute it under certain conditions. 615s Type 'license()' or 'licence()' for distribution details. 615s 615s R is a collaborative project with many contributors. 615s Type 'contributors()' for more information and 615s 'citation()' on how to cite R or R packages in publications. 615s 615s Type 'demo()' for some demos, 'help()' for on-line help, or 615s 'help.start()' for an HTML browser interface to help. 615s Type 'q()' to quit R. 615s 615s > library('bio3d') 615s > 615s > 615s Other tests are currently unsupported! 615s They will be progressively added. 616s autopkgtest [18:04:55]: test pkg-r-autopkgtest: -----------------------] 616s pkg-r-autopkgtest PASS 616s autopkgtest [18:04:55]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 616s autopkgtest [18:04:55]: @@@@@@@@@@@@@@@@@@@@ summary 616s run-unit-test PASS 616s pkg-r-autopkgtest PASS 634s nova [W] Using flock in prodstack6-s390x 634s Creating nova instance adt-plucky-s390x-r-cran-bio3d-20250315-175439-juju-7f2275-prod-proposed-migration-environment-15-70d83f26-9070-4836-ad96-11e98ba761e1 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 634s nova [W] Timed out waiting for 988ef4c2-e583-4f22-b382-e8159413ae19 to get deleted. 634s nova [W] Using flock in prodstack6-s390x 634s Creating nova instance adt-plucky-s390x-r-cran-bio3d-20250315-175439-juju-7f2275-prod-proposed-migration-environment-15-70d83f26-9070-4836-ad96-11e98ba761e1 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 634s nova [W] Timed out waiting for 9bf33205-e328-4575-a60c-5ce49162dd6f to get deleted.