0s autopkgtest [09:53:59]: starting date and time: 2025-01-29 09:53:59+0000 0s autopkgtest [09:53:59]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [09:53:59]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jt00hzve/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-cran-bigmemory --apt-upgrade r-cran-bio3d --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=r-cran-bigmemory/4.6.4-1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-29.secgroup --name adt-plucky-s390x-r-cran-bio3d-20250129-095359-juju-7f2275-prod-proposed-migration-environment-15-99b692dc-0a15-432d-b5f6-62fbea0ef25b --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 102s autopkgtest [09:55:41]: testbed dpkg architecture: s390x 102s autopkgtest [09:55:41]: testbed apt version: 2.9.18 102s autopkgtest [09:55:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s autopkgtest [09:55:41]: testbed release detected to be: None 103s autopkgtest [09:55:42]: updating testbed package index (apt update) 104s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [110 kB] 104s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 104s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 104s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 104s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/restricted Sources [8676 B] 104s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [10.4 kB] 104s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [607 kB] 104s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [59.5 kB] 104s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [79.2 kB] 104s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x Packages [756 B] 104s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [457 kB] 104s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3040 B] 104s Fetched 1337 kB in 1s (1297 kB/s) 105s Reading package lists... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s Calculating upgrade... 106s The following packages will be upgraded: 106s gzip 106s 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Need to get 107 kB of archives. 106s After this operation, 0 B of additional disk space will be used. 106s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x gzip s390x 1.12-1.1ubuntu2 [107 kB] 107s Fetched 107 kB in 0s (288 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56384 files and directories currently installed.) 107s Preparing to unpack .../gzip_1.12-1.1ubuntu2_s390x.deb ... 107s Unpacking gzip (1.12-1.1ubuntu2) over (1.12-1.1ubuntu1) ... 107s Setting up gzip (1.12-1.1ubuntu2) ... 107s Processing triggers for install-info (7.1.1-1) ... 107s Processing triggers for man-db (2.13.0-1) ... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [09:55:47]: upgrading testbed (apt dist-upgrade and autopurge) 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 108s Entering ResolveByKeep 108s 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 109s Starting 2 pkgProblemResolver with broken count: 0 109s Done 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 112s autopkgtest [09:55:51]: testbed running kernel: Linux 6.11.0-8-generic #8-Ubuntu SMP Mon Sep 16 12:49:35 UTC 2024 112s autopkgtest [09:55:51]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-bio3d 114s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-4-1 (dsc) [2128 B] 114s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-4-1 (tar) [1545 kB] 114s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-cran-bio3d 2.4-4-1 (diff) [5340 B] 114s gpgv: Signature made Fri Oct 28 10:07:43 2022 UTC 114s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 114s gpgv: issuer "tillea@rki.de" 114s gpgv: Can't check signature: No public key 114s dpkg-source: warning: cannot verify inline signature for ./r-cran-bio3d_2.4-4-1.dsc: no acceptable signature found 114s autopkgtest [09:55:53]: testing package r-cran-bio3d version 2.4-4-1 115s autopkgtest [09:55:54]: build not needed 119s autopkgtest [09:55:58]: test run-unit-test: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s Starting pkgProblemResolver with broken count: 0 119s Starting 2 pkgProblemResolver with broken count: 0 119s Done 119s The following NEW packages will be installed: 119s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono libblas3 119s libcairo2 libdatrie1 libdeflate0 libfontconfig1 libfreetype6 libgfortran5 119s libgomp1 libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg-turbo8 119s libjpeg8 liblapack3 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 119s libpaper-utils libpaper2 libpixman-1-0 libsharpyuv0 libsm6 libtcl8.6 119s libthai-data libthai0 libtiff6 libtk8.6 libwebp7 libxcb-render0 libxcb-shm0 119s libxft2 libxrender1 libxss1 libxt6t64 littler r-base-core r-cran-bio3d 119s r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj 119s r-cran-digest r-cran-evaluate r-cran-fs r-cran-glue r-cran-jsonlite 119s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-pkgbuild 119s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps 119s r-cran-r6 r-cran-rcpp r-cran-rlang r-cran-rprojroot r-cran-testthat 119s r-cran-waldo r-cran-withr unzip x11-common xdg-utils zip 120s 0 upgraded, 73 newly installed, 0 to remove and 0 not upgraded. 120s Need to get 55.2 MB of archives. 120s After this operation, 111 MB of additional disk space will be used. 120s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 120s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 120s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 120s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-1.1ubuntu2 [37.4 kB] 120s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-1.1ubuntu2 [150 kB] 120s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-1.1ubuntu2 [191 kB] 120s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.0-4 [238 kB] 121s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 121s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 121s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 121s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 121s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 121s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 121s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 121s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 14.2.0-13ubuntu1 [588 kB] 121s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 14.2.0-13ubuntu1 [151 kB] 121s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 121s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 121s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 121s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 121s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 121s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 121s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.0-4 [2964 kB] 122s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 122s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 122s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB] 122s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB] 122s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB] 122s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 122s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 122s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 122s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 122s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 122s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 122s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 123s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 123s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 123s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 123s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 123s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 123s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 123s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 123s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-0ubuntu1 [67.5 kB] 123s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.2-1build1 [28.6 MB] 129s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB] 129s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B] 129s Get:47 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB] 129s Get:48 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB] 129s Get:49 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bio3d s390x 2.4-4-1 [2986 kB] 130s Get:50 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB] 130s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.8.1-1 [395 kB] 130s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.5.1-1 [99.0 kB] 130s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.5-1 [354 kB] 130s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB] 130s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.3-1 [1349 kB] 130s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 130s Get:57 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB] 130s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB] 130s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB] 130s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB] 130s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB] 130s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 130s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.8.9+dfsg-1 [447 kB] 130s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 130s Get:65 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 130s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 130s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB] 130s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB] 130s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 130s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB] 130s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB] 130s Get:72 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-1 [150 kB] 130s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.1.1-1 [1638 kB] 131s Preconfiguring packages ... 131s Fetched 55.2 MB in 11s (5044 kB/s) 131s Selecting previously unselected package libfreetype6:s390x. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56384 files and directories currently installed.) 131s Preparing to unpack .../00-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 131s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 131s Selecting previously unselected package fonts-dejavu-mono. 131s Preparing to unpack .../01-fonts-dejavu-mono_2.37-8_all.deb ... 131s Unpacking fonts-dejavu-mono (2.37-8) ... 131s Selecting previously unselected package fonts-dejavu-core. 131s Preparing to unpack .../02-fonts-dejavu-core_2.37-8_all.deb ... 131s Unpacking fonts-dejavu-core (2.37-8) ... 131s Selecting previously unselected package fontconfig-config. 131s Preparing to unpack .../03-fontconfig-config_2.15.0-1.1ubuntu2_s390x.deb ... 131s Unpacking fontconfig-config (2.15.0-1.1ubuntu2) ... 131s Selecting previously unselected package libfontconfig1:s390x. 131s Preparing to unpack .../04-libfontconfig1_2.15.0-1.1ubuntu2_s390x.deb ... 131s Unpacking libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 131s Selecting previously unselected package fontconfig. 131s Preparing to unpack .../05-fontconfig_2.15.0-1.1ubuntu2_s390x.deb ... 131s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 131s Selecting previously unselected package libblas3:s390x. 131s Preparing to unpack .../06-libblas3_3.12.0-4_s390x.deb ... 131s Unpacking libblas3:s390x (3.12.0-4) ... 131s Selecting previously unselected package libpixman-1-0:s390x. 131s Preparing to unpack .../07-libpixman-1-0_0.44.0-3_s390x.deb ... 131s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 131s Selecting previously unselected package libxcb-render0:s390x. 131s Preparing to unpack .../08-libxcb-render0_1.17.0-2_s390x.deb ... 131s Unpacking libxcb-render0:s390x (1.17.0-2) ... 131s Selecting previously unselected package libxcb-shm0:s390x. 131s Preparing to unpack .../09-libxcb-shm0_1.17.0-2_s390x.deb ... 131s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 131s Selecting previously unselected package libxrender1:s390x. 131s Preparing to unpack .../10-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 131s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 131s Selecting previously unselected package libcairo2:s390x. 131s Preparing to unpack .../11-libcairo2_1.18.2-2_s390x.deb ... 131s Unpacking libcairo2:s390x (1.18.2-2) ... 131s Selecting previously unselected package libdatrie1:s390x. 131s Preparing to unpack .../12-libdatrie1_0.2.13-3build1_s390x.deb ... 131s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 131s Selecting previously unselected package libdeflate0:s390x. 131s Preparing to unpack .../13-libdeflate0_1.23-1_s390x.deb ... 131s Unpacking libdeflate0:s390x (1.23-1) ... 131s Selecting previously unselected package libgfortran5:s390x. 131s Preparing to unpack .../14-libgfortran5_14.2.0-13ubuntu1_s390x.deb ... 131s Unpacking libgfortran5:s390x (14.2.0-13ubuntu1) ... 131s Selecting previously unselected package libgomp1:s390x. 131s Preparing to unpack .../15-libgomp1_14.2.0-13ubuntu1_s390x.deb ... 131s Unpacking libgomp1:s390x (14.2.0-13ubuntu1) ... 131s Selecting previously unselected package libgraphite2-3:s390x. 131s Preparing to unpack .../16-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 131s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 131s Selecting previously unselected package libharfbuzz0b:s390x. 131s Preparing to unpack .../17-libharfbuzz0b_10.2.0-1_s390x.deb ... 131s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 131s Selecting previously unselected package x11-common. 131s Preparing to unpack .../18-x11-common_1%3a7.7+23ubuntu3_all.deb ... 131s Unpacking x11-common (1:7.7+23ubuntu3) ... 131s Selecting previously unselected package libice6:s390x. 131s Preparing to unpack .../19-libice6_2%3a1.1.1-1_s390x.deb ... 131s Unpacking libice6:s390x (2:1.1.1-1) ... 131s Selecting previously unselected package libjpeg-turbo8:s390x. 131s Preparing to unpack .../20-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 131s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 131s Selecting previously unselected package libjpeg8:s390x. 131s Preparing to unpack .../21-libjpeg8_8c-2ubuntu11_s390x.deb ... 131s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 131s Selecting previously unselected package liblapack3:s390x. 131s Preparing to unpack .../22-liblapack3_3.12.0-4_s390x.deb ... 131s Unpacking liblapack3:s390x (3.12.0-4) ... 131s Selecting previously unselected package libthai-data. 131s Preparing to unpack .../23-libthai-data_0.1.29-2build1_all.deb ... 131s Unpacking libthai-data (0.1.29-2build1) ... 131s Selecting previously unselected package libthai0:s390x. 131s Preparing to unpack .../24-libthai0_0.1.29-2build1_s390x.deb ... 131s Unpacking libthai0:s390x (0.1.29-2build1) ... 131s Selecting previously unselected package libpango-1.0-0:s390x. 131s Preparing to unpack .../25-libpango-1.0-0_1.56.1-1_s390x.deb ... 131s Unpacking libpango-1.0-0:s390x (1.56.1-1) ... 131s Selecting previously unselected package libpangoft2-1.0-0:s390x. 131s Preparing to unpack .../26-libpangoft2-1.0-0_1.56.1-1_s390x.deb ... 131s Unpacking libpangoft2-1.0-0:s390x (1.56.1-1) ... 131s Selecting previously unselected package libpangocairo-1.0-0:s390x. 131s Preparing to unpack .../27-libpangocairo-1.0-0_1.56.1-1_s390x.deb ... 131s Unpacking libpangocairo-1.0-0:s390x (1.56.1-1) ... 131s Selecting previously unselected package libpaper2:s390x. 131s Preparing to unpack .../28-libpaper2_2.2.5-0.3_s390x.deb ... 131s Unpacking libpaper2:s390x (2.2.5-0.3) ... 131s Selecting previously unselected package libpaper-utils. 131s Preparing to unpack .../29-libpaper-utils_2.2.5-0.3_s390x.deb ... 131s Unpacking libpaper-utils (2.2.5-0.3) ... 131s Selecting previously unselected package libsharpyuv0:s390x. 131s Preparing to unpack .../30-libsharpyuv0_1.5.0-0.1_s390x.deb ... 131s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 131s Selecting previously unselected package libsm6:s390x. 131s Preparing to unpack .../31-libsm6_2%3a1.2.4-1_s390x.deb ... 131s Unpacking libsm6:s390x (2:1.2.4-1) ... 131s Selecting previously unselected package libtcl8.6:s390x. 131s Preparing to unpack .../32-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 131s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 131s Selecting previously unselected package libjbig0:s390x. 131s Preparing to unpack .../33-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 131s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 131s Selecting previously unselected package libwebp7:s390x. 131s Preparing to unpack .../34-libwebp7_1.5.0-0.1_s390x.deb ... 131s Unpacking libwebp7:s390x (1.5.0-0.1) ... 131s Selecting previously unselected package libtiff6:s390x. 131s Preparing to unpack .../35-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 131s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 131s Selecting previously unselected package libxft2:s390x. 131s Preparing to unpack .../36-libxft2_2.3.6-1build1_s390x.deb ... 131s Unpacking libxft2:s390x (2.3.6-1build1) ... 131s Selecting previously unselected package libxss1:s390x. 131s Preparing to unpack .../37-libxss1_1%3a1.2.3-1build3_s390x.deb ... 131s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 131s Selecting previously unselected package libtk8.6:s390x. 131s Preparing to unpack .../38-libtk8.6_8.6.16-1_s390x.deb ... 131s Unpacking libtk8.6:s390x (8.6.16-1) ... 131s Selecting previously unselected package libxt6t64:s390x. 131s Preparing to unpack .../39-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 131s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 131s Selecting previously unselected package zip. 131s Preparing to unpack .../40-zip_3.0-14ubuntu2_s390x.deb ... 131s Unpacking zip (3.0-14ubuntu2) ... 131s Selecting previously unselected package unzip. 131s Preparing to unpack .../41-unzip_6.0-28ubuntu6_s390x.deb ... 131s Unpacking unzip (6.0-28ubuntu6) ... 131s Selecting previously unselected package xdg-utils. 131s Preparing to unpack .../42-xdg-utils_1.2.1-0ubuntu1_all.deb ... 131s Unpacking xdg-utils (1.2.1-0ubuntu1) ... 131s Selecting previously unselected package r-base-core. 131s Preparing to unpack .../43-r-base-core_4.4.2-1build1_s390x.deb ... 131s Unpacking r-base-core (4.4.2-1build1) ... 132s Selecting previously unselected package r-cran-littler. 132s Preparing to unpack .../44-r-cran-littler_0.3.20-2_s390x.deb ... 132s Unpacking r-cran-littler (0.3.20-2) ... 132s Selecting previously unselected package littler. 132s Preparing to unpack .../45-littler_0.3.20-2_all.deb ... 132s Unpacking littler (0.3.20-2) ... 132s Selecting previously unselected package r-cran-pkgkitten. 132s Preparing to unpack .../46-r-cran-pkgkitten_0.2.4-1_all.deb ... 132s Unpacking r-cran-pkgkitten (0.2.4-1) ... 132s Selecting previously unselected package r-cran-rcpp. 132s Preparing to unpack .../47-r-cran-rcpp_1.0.14-1_s390x.deb ... 132s Unpacking r-cran-rcpp (1.0.14-1) ... 132s Selecting previously unselected package r-cran-bio3d. 132s Preparing to unpack .../48-r-cran-bio3d_2.4-4-1_s390x.deb ... 132s Unpacking r-cran-bio3d (2.4-4-1) ... 132s Selecting previously unselected package r-cran-brio. 132s Preparing to unpack .../49-r-cran-brio_1.1.5-1_s390x.deb ... 132s Unpacking r-cran-brio (1.1.5-1) ... 132s Selecting previously unselected package r-cran-ps. 132s Preparing to unpack .../50-r-cran-ps_1.8.1-1_s390x.deb ... 132s Unpacking r-cran-ps (1.8.1-1) ... 132s Selecting previously unselected package r-cran-r6. 132s Preparing to unpack .../51-r-cran-r6_2.5.1-1_all.deb ... 132s Unpacking r-cran-r6 (2.5.1-1) ... 132s Selecting previously unselected package r-cran-processx. 132s Preparing to unpack .../52-r-cran-processx_3.8.5-1_s390x.deb ... 132s Unpacking r-cran-processx (3.8.5-1) ... 132s Selecting previously unselected package r-cran-callr. 132s Preparing to unpack .../53-r-cran-callr_3.7.6-1_all.deb ... 132s Unpacking r-cran-callr (3.7.6-1) ... 132s Selecting previously unselected package r-cran-cli. 132s Preparing to unpack .../54-r-cran-cli_3.6.3-1_s390x.deb ... 132s Unpacking r-cran-cli (3.6.3-1) ... 132s Selecting previously unselected package r-cran-crayon. 132s Preparing to unpack .../55-r-cran-crayon_1.5.3-1_all.deb ... 132s Unpacking r-cran-crayon (1.5.3-1) ... 132s Selecting previously unselected package r-cran-desc. 132s Preparing to unpack .../56-r-cran-desc_1.4.3-1_all.deb ... 132s Unpacking r-cran-desc (1.4.3-1) ... 132s Selecting previously unselected package r-cran-diffobj. 132s Preparing to unpack .../57-r-cran-diffobj_0.3.5-1_s390x.deb ... 132s Unpacking r-cran-diffobj (0.3.5-1) ... 132s Selecting previously unselected package r-cran-digest. 132s Preparing to unpack .../58-r-cran-digest_0.6.37-1_s390x.deb ... 132s Unpacking r-cran-digest (0.6.37-1) ... 132s Selecting previously unselected package r-cran-evaluate. 132s Preparing to unpack .../59-r-cran-evaluate_1.0.3-1_all.deb ... 132s Unpacking r-cran-evaluate (1.0.3-1) ... 132s Selecting previously unselected package r-cran-fs. 132s Preparing to unpack .../60-r-cran-fs_1.6.5+dfsg-1_s390x.deb ... 132s Unpacking r-cran-fs (1.6.5+dfsg-1) ... 132s Selecting previously unselected package r-cran-glue. 132s Preparing to unpack .../61-r-cran-glue_1.8.0-1_s390x.deb ... 132s Unpacking r-cran-glue (1.8.0-1) ... 132s Selecting previously unselected package r-cran-jsonlite. 132s Preparing to unpack .../62-r-cran-jsonlite_1.8.9+dfsg-1_s390x.deb ... 132s Unpacking r-cran-jsonlite (1.8.9+dfsg-1) ... 132s Selecting previously unselected package r-cran-rlang. 132s Preparing to unpack .../63-r-cran-rlang_1.1.5-1_s390x.deb ... 132s Unpacking r-cran-rlang 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.../69-r-cran-pkgload_1.4.0-1_all.deb ... 132s Unpacking r-cran-pkgload (1.4.0-1) ... 132s Selecting previously unselected package r-cran-praise. 132s Preparing to unpack .../70-r-cran-praise_1.0.0-4build1_all.deb ... 132s Unpacking r-cran-praise (1.0.0-4build1) ... 132s Selecting previously unselected package r-cran-waldo. 132s Preparing to unpack .../71-r-cran-waldo_0.6.1-1_all.deb ... 132s Unpacking r-cran-waldo (0.6.1-1) ... 132s Selecting previously unselected package r-cran-testthat. 132s Preparing to unpack .../72-r-cran-testthat_3.2.1.1-1_s390x.deb ... 132s Unpacking r-cran-testthat (3.2.1.1-1) ... 132s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 132s Setting up libpixman-1-0:s390x (0.44.0-3) ... 132s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 132s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 132s Setting up libdatrie1:s390x (0.2.13-3build1) ... 132s Setting up libxcb-render0:s390x (1.17.0-2) ... 132s Setting up unzip (6.0-28ubuntu6) ... 132s Setting up x11-common (1:7.7+23ubuntu3) ... 132s Setting up libdeflate0:s390x (1.23-1) ... 132s Setting up libxcb-shm0:s390x (1.17.0-2) ... 132s Setting up libgomp1:s390x (14.2.0-13ubuntu1) ... 132s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 132s Setting up zip (3.0-14ubuntu2) ... 132s Setting up libblas3:s390x (3.12.0-4) ... 132s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 132s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 132s Setting up fonts-dejavu-mono (2.37-8) ... 132s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 132s Setting up fonts-dejavu-core (2.37-8) ... 132s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 132s Setting up libgfortran5:s390x (14.2.0-13ubuntu1) ... 132s Setting up libwebp7:s390x (1.5.0-0.1) ... 132s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 132s Setting up libthai-data (0.1.29-2build1) ... 132s Setting up libxss1:s390x (1:1.2.3-1build3) ... 132s Setting up libpaper2:s390x (2.2.5-0.3) ... 132s Setting up xdg-utils (1.2.1-0ubuntu1) ... 132s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 132s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 132s Setting up libice6:s390x (2:1.1.1-1) ... 132s Setting up liblapack3:s390x (3.12.0-4) ... 132s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 132s Setting up fontconfig-config (2.15.0-1.1ubuntu2) ... 133s Setting up libpaper-utils (2.2.5-0.3) ... 133s Setting up libthai0:s390x (0.1.29-2build1) ... 133s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 133s Setting up libfontconfig1:s390x (2.15.0-1.1ubuntu2) ... 133s Setting up libsm6:s390x (2:1.2.4-1) ... 133s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 135s Regenerating fonts cache... done. 135s Setting up libxft2:s390x (2.3.6-1build1) ... 135s Setting up libtk8.6:s390x (8.6.16-1) ... 135s Setting up libpango-1.0-0:s390x (1.56.1-1) ... 135s Setting up libcairo2:s390x (1.18.2-2) ... 135s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 135s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ... 135s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ... 135s Setting up r-base-core (4.4.2-1build1) ... 135s Creating config file /etc/R/Renviron with new version 135s Setting up r-cran-crayon (1.5.3-1) ... 135s Setting up r-cran-ps (1.8.1-1) ... 135s Setting up r-cran-r6 (2.5.1-1) ... 135s Setting up r-cran-pkgkitten (0.2.4-1) ... 135s Setting up r-cran-magrittr (2.0.3-1) ... 135s Setting up r-cran-littler (0.3.20-2) ... 135s Setting up r-cran-fs (1.6.5+dfsg-1) ... 135s Setting up r-cran-rcpp (1.0.14-1) ... 135s Setting up r-cran-brio (1.1.5-1) ... 135s Setting up r-cran-diffobj (0.3.5-1) ... 135s Setting up r-cran-rlang (1.1.5-1) ... 135s Setting up littler (0.3.20-2) ... 135s Setting up r-cran-bio3d (2.4-4-1) ... 135s Setting up r-cran-withr (3.0.2+dfsg-1) ... 135s Setting up r-cran-processx (3.8.5-1) ... 135s Setting up r-cran-praise (1.0.0-4build1) ... 135s Setting up r-cran-digest (0.6.37-1) ... 135s Setting up r-cran-evaluate (1.0.3-1) ... 135s Setting up r-cran-glue (1.8.0-1) ... 135s Setting up r-cran-cli (3.6.3-1) ... 135s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 135s Setting up r-cran-rprojroot (2.0.4-2) ... 135s Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... 135s Setting up r-cran-waldo (0.6.1-1) ... 135s Setting up r-cran-callr (3.7.6-1) ... 135s Setting up r-cran-desc (1.4.3-1) ... 135s Setting up r-cran-pkgbuild (1.4.6-1) ... 135s Setting up r-cran-pkgload (1.4.0-1) ... 135s Setting up r-cran-testthat (3.2.1.1-1) ... 135s Processing triggers for libc-bin (2.40-4ubuntu1) ... 135s Processing triggers for man-db (2.13.0-1) ... 135s Processing triggers for install-info (7.1.1-1) ... 136s autopkgtest [09:56:15]: test run-unit-test: [----------------------- 137s BEGIN TEST testthat.R 137s 137s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 137s Copyright (C) 2024 The R Foundation for Statistical Computing 137s Platform: s390x-ibm-linux-gnu 137s 137s R is free software and comes with ABSOLUTELY NO WARRANTY. 137s You are welcome to redistribute it under certain conditions. 137s Type 'license()' or 'licence()' for distribution details. 137s 137s R is a collaborative project with many contributors. 137s Type 'contributors()' for more information and 137s 'citation()' on how to cite R or R packages in publications. 137s 137s Type 'demo()' for some demos, 'help()' for on-line help, or 137s 'help.start()' for an HTML browser interface to help. 137s Type 'q()' to quit R. 137s 137s > library(testthat) 137s > test_check("bio3d") 137s Loading required package: bio3d 142s [ FAIL 0 | WARN 58 | SKIP 29 | PASS 174 ] 142s 142s == Skipped tests (29) ========================================================== 142s * On CRAN (29): 'test-aanma.R:5:3', 'test-aanma.pdbs.R:10:3', 142s 'test-clean.pdb.R:24:3', 'test-cmap.R:20:3', 'test-cna.R:5:3', 142s 'test-core.find.R:5:3', 'test-dccm.R:27:3', 'test-dccm.R:47:3', 142s 'test-dssp.R:4:3', 'test-fitting.R:64:3', 'test-fitting.R:91:4', 142s 'test-fitting.R:116:4', 'test-get.pdb.R:4:3', 'test-get.pdb.R:24:3', 142s 'test-get.seq.R:4:3', 'test-mol2.R:34:3', 'test-mol2.R:49:3', 142s 'test-mol2.R:82:3', 'test-nma.pdbs.R:5:3', 'test-pdb.annotate.R:5:3', 142s 'test-pdbsplit.R:5:3', 'test-read.all.R:6:3', 'test-read.cif.R:5:3', 142s 'test-read.cif.R:49:3', 'test-read.ncdf.R:4:4', 'test-read.pdb.R:43:3', 142s 'test-read.pdb.R:121:3', 'test-read.pdb.R:141:3', 'test-seqaln.R:5:3' 142s 142s [ FAIL 0 | WARN 58 | SKIP 29 | PASS 174 ] 142s > 143s autopkgtest [09:56:22]: test run-unit-test: -----------------------] 143s run-unit-test PASS 143s autopkgtest [09:56:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 143s autopkgtest [09:56:22]: test pkg-r-autopkgtest: preparing testbed 144s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Starting pkgProblemResolver with broken count: 0 144s Starting 2 pkgProblemResolver with broken count: 0 144s Done 144s The following NEW packages will be installed: 144s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 144s dctrl-tools fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ 144s g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 144s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 144s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools 144s javascript-common libaec0 libamd3 libasan8 libblas-dev libboost-dev 144s libboost1.83-dev libbz2-dev libcc1-0 libcolamd3 libdeflate-dev libgcc-14-dev 144s libgfortran-14-dev libglpk40 libhdf5-310 libhdf5-hl-310 libicu-dev libisl23 144s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap 144s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 144s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 144s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 144s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 144s liblapack-dev libltdl7 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev 144s libnetcdf19t64 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 144s libpkgconf3 libpng-dev libreadline-dev libstdc++-14-dev 144s libsuitesparseconfig7 libsz2 libtirpc-dev libubsan1 node-bootstrap-sass 144s node-html5shiv node-normalize.css pandoc pandoc-data pkg-r-autopkgtest 144s pkgconf pkgconf-bin r-base-dev r-bioc-biocgenerics r-bioc-biostrings 144s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors 144s r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 144s r-cran-base64enc r-cran-bh r-cran-bigmemory r-cran-bigmemory.sri 144s r-cran-bitops r-cran-bslib r-cran-cachem r-cran-commonmark r-cran-cpp11 144s r-cran-curl r-cran-fastmap r-cran-fontawesome r-cran-highr r-cran-htmltools 144s r-cran-httpuv r-cran-httr r-cran-igraph r-cran-jquerylib r-cran-knitr 144s r-cran-later r-cran-lattice r-cran-matrix r-cran-memoise r-cran-mime 144s r-cran-ncdf4 r-cran-openssl r-cran-pkgconfig r-cran-promises r-cran-rappdirs 144s r-cran-rcurl r-cran-rmarkdown r-cran-sass r-cran-shiny r-cran-sourcetools 144s r-cran-sys r-cran-tinytex r-cran-uuid r-cran-vctrs r-cran-xfun r-cran-xml 144s r-cran-xtable r-cran-yaml zlib1g-dev 144s 0 upgraded, 142 newly installed, 0 to remove and 0 not upgraded. 144s Need to get 228 MB of archives. 144s After this operation, 989 MB of additional disk space will be used. 144s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 145s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 145s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-13ubuntu1 [9570 kB] 147s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-13ubuntu1 [1026 B] 147s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [5452 B] 147s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.1.0-2ubuntu1 [22.4 kB] 147s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 14.2.0-13ubuntu1 [50.7 kB] 147s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 14.2.0-13ubuntu1 [30.9 kB] 147s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 14.2.0-13ubuntu1 [2964 kB] 148s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 14.2.0-13ubuntu1 [1184 kB] 148s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-13ubuntu1 [1037 kB] 148s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-13ubuntu1 [18.7 MB] 152s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-13ubuntu1 [523 kB] 152s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1204 B] 152s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.1.0-2ubuntu1 [4996 B] 152s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-13ubuntu1 [2612 kB] 153s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-13ubuntu1 [11.0 MB] 155s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-13ubuntu1 [21.1 kB] 155s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [956 B] 155s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.1.0-2ubuntu1 [1076 B] 155s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 155s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 155s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 155s Get:24 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 155s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 156s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-13ubuntu1 [654 kB] 156s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-13ubuntu1 [10.3 MB] 158s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-13ubuntu1 [13.2 kB] 158s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.1.0-2ubuntu1 [1016 B] 158s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.1.0-2ubuntu1 [1160 B] 158s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 158s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 11+nmu1 [5936 B] 158s Get:33 http://ftpmaster.internal/ubuntu plucky/universe s390x libaec0 s390x 1.1.3-1 [25.7 kB] 158s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libsuitesparseconfig7 s390x 1:7.8.3+dfsg-2 [13.1 kB] 158s Get:35 http://ftpmaster.internal/ubuntu plucky/universe s390x libamd3 s390x 1:7.8.3+dfsg-2 [35.1 kB] 158s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.0-4 [239 kB] 158s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4ubuntu2 [10.7 MB] 160s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 160s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 160s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libcolamd3 s390x 1:7.8.3+dfsg-2 [23.4 kB] 160s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 160s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libltdl7 s390x 2.5.4-2 [43.7 kB] 160s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x libglpk40 s390x 5.0-1build2 [406 kB] 160s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libsz2 s390x 1.1.3-1 [5442 B] 160s Get:45 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-310 s390x 1.14.5+repack-3 [1477 kB] 160s Get:46 http://ftpmaster.internal/ubuntu plucky/universe s390x libhdf5-hl-310 s390x 1.14.5+repack-3 [61.0 kB] 160s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 163s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 163s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 163s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 163s Get:51 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 163s Get:52 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 163s Get:53 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 163s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB] 164s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB] 164s Get:56 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 164s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 164s Get:58 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 164s Get:59 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 164s Get:60 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 164s Get:61 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 164s Get:62 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 164s Get:63 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 164s Get:64 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 164s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.0-4 [5956 kB] 165s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB] 165s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5-2 [404 kB] 165s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libnetcdf19t64 s390x 1:4.9.2-6ubuntu2 [497 kB] 165s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.42-4ubuntu3 [236 kB] 165s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.42-4ubuntu3 [221 kB] 166s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.42-4ubuntu3 [6820 B] 166s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.42-4ubuntu3 [815 kB] 166s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 166s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 166s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.44-3 [279 kB] 166s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 166s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB] 166s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 166s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB] 166s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB] 166s Get:81 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB] 183s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.3-1 [183 kB] 183s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 183s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 183s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 183s Get:86 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.2-1build1 [4342 B] 183s Get:87 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 183s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 183s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 184s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 185s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 185s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 185s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.1.0+dfsg-1 [195 kB] 185s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 185s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 185s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 185s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.2.0+dfsg-1 [405 kB] 186s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 186s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 186s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 190s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.1+dfsg-2 [3883 kB] 192s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 205s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB] 205s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 205s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bigmemory.sri all 0.1.8-1 [13.4 kB] 205s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-uuid s390x 1.2-1-1 [49.3 kB] 205s Get:107 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x r-cran-bigmemory s390x 4.6.4-1 [505 kB] 205s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 205s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 205s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 205s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB] 206s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 206s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 206s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB] 206s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB] 207s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.7.0+dfsg-1 [4255 kB] 210s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB] 210s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.0-1 [221 kB] 210s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.2-1 [1300 kB] 212s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.50+dfsg-1 [568 kB] 212s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB] 212s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB] 212s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB] 213s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB] 213s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 215s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-2-1 [4441 kB] 219s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 219s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 220s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-igraph s390x 2.1.3-1 [5309 kB] 226s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 226s Get:131 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 230s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB] 231s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ncdf4 s390x 1.23-1 [279 kB] 231s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 232s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.54-1 [147 kB] 232s Get:136 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB] 232s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB] 233s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB] 233s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 233s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.9.1+dfsg-1 [3111 kB] 235s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB] 236s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 238s Fetched 228 MB in 1min 34s (2431 kB/s) 239s Selecting previously unselected package libisl23:s390x. 239s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 62275 files and directories currently installed.) 239s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 239s Unpacking libisl23:s390x (0.27-1) ... 239s Selecting previously unselected package libmpc3:s390x. 239s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 239s Unpacking libmpc3:s390x (1.3.1-1build2) ... 239s Selecting previously unselected package cpp-14-s390x-linux-gnu. 239s Preparing to unpack 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Unpacking libitm1:s390x (14.2.0-13ubuntu1) ... 239s Selecting previously unselected package libasan8:s390x. 239s Preparing to unpack .../008-libasan8_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking libasan8:s390x (14.2.0-13ubuntu1) ... 239s Selecting previously unselected package libubsan1:s390x. 239s Preparing to unpack .../009-libubsan1_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking libubsan1:s390x (14.2.0-13ubuntu1) ... 239s Selecting previously unselected package libgcc-14-dev:s390x. 239s Preparing to unpack .../010-libgcc-14-dev_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking libgcc-14-dev:s390x (14.2.0-13ubuntu1) ... 239s Selecting previously unselected package gcc-14-s390x-linux-gnu. 239s Preparing to unpack .../011-gcc-14-s390x-linux-gnu_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking gcc-14-s390x-linux-gnu (14.2.0-13ubuntu1) ... 239s Selecting previously unselected package gcc-14. 239s Preparing to unpack .../012-gcc-14_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking gcc-14 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package fonts-glyphicons-halflings. 239s Preparing to unpack .../023-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 239s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 239s Selecting previously unselected package fonts-mathjax. 239s Preparing to unpack .../024-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 239s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 239s Selecting previously unselected package libgfortran-14-dev:s390x. 239s Preparing to unpack .../025-libgfortran-14-dev_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking libgfortran-14-dev:s390x (14.2.0-13ubuntu1) ... 239s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 239s Preparing to unpack .../026-gfortran-14-s390x-linux-gnu_14.2.0-13ubuntu1_s390x.deb ... 239s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-13ubuntu1) ... 240s Selecting previously unselected package gfortran-14. 240s Preparing to unpack .../027-gfortran-14_14.2.0-13ubuntu1_s390x.deb ... 240s Unpacking gfortran-14 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package libsuitesparseconfig7:s390x. 240s Preparing to unpack .../033-libsuitesparseconfig7_1%3a7.8.3+dfsg-2_s390x.deb ... 240s Unpacking libsuitesparseconfig7:s390x (1:7.8.3+dfsg-2) ... 240s Selecting previously unselected package libamd3:s390x. 240s Preparing to unpack .../034-libamd3_1%3a7.8.3+dfsg-2_s390x.deb ... 240s Unpacking libamd3:s390x (1:7.8.3+dfsg-2) ... 240s Selecting previously unselected package libblas-dev:s390x. 240s Preparing to unpack .../035-libblas-dev_3.12.0-4_s390x.deb ... 240s Unpacking libblas-dev:s390x (3.12.0-4) ... 240s Selecting previously unselected package libboost1.83-dev:s390x. 240s Preparing to unpack .../036-libboost1.83-dev_1.83.0-4ubuntu2_s390x.deb ... 240s Unpacking libboost1.83-dev:s390x (1.83.0-4ubuntu2) ... 241s Selecting previously unselected package libboost-dev:s390x. 241s Preparing to unpack .../037-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 241s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 241s Selecting previously unselected package libbz2-dev:s390x. 241s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ... 241s Unpacking libbz2-dev:s390x (1.0.8-6) ... 241s Selecting previously unselected package libcolamd3:s390x. 241s Preparing to unpack .../039-libcolamd3_1%3a7.8.3+dfsg-2_s390x.deb ... 241s Unpacking libcolamd3:s390x (1:7.8.3+dfsg-2) ... 241s Selecting previously unselected package libdeflate-dev:s390x. 241s Preparing to unpack .../040-libdeflate-dev_1.23-1_s390x.deb ... 241s Unpacking libdeflate-dev:s390x (1.23-1) ... 241s Selecting previously unselected package libltdl7:s390x. 241s Preparing to unpack .../041-libltdl7_2.5.4-2_s390x.deb ... 241s Unpacking libltdl7:s390x (2.5.4-2) ... 241s Selecting previously unselected package libglpk40:s390x. 241s Preparing to unpack .../042-libglpk40_5.0-1build2_s390x.deb ... 241s Unpacking libglpk40:s390x (5.0-1build2) ... 241s Selecting previously unselected package libsz2:s390x. 241s Preparing to unpack .../043-libsz2_1.1.3-1_s390x.deb ... 241s Unpacking libsz2:s390x (1.1.3-1) ... 241s Selecting previously unselected package libhdf5-310:s390x. 241s Preparing to unpack .../044-libhdf5-310_1.14.5+repack-3_s390x.deb ... 241s Unpacking libhdf5-310:s390x (1.14.5+repack-3) ... 241s Selecting previously unselected package libhdf5-hl-310:s390x. 241s Preparing to unpack .../045-libhdf5-hl-310_1.14.5+repack-3_s390x.deb ... 241s Unpacking libhdf5-hl-310:s390x (1.14.5+repack-3) ... 241s Selecting previously unselected package libicu-dev:s390x. 241s Preparing to unpack .../046-libicu-dev_76.1-1ubuntu2_s390x.deb ... 241s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 241s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 241s Preparing to unpack .../047-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 241s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 241s Selecting previously unselected package libjpeg8-dev:s390x. 241s Preparing to unpack .../048-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 241s Unpacking libjpeg8-dev:s390x 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... 242s Unpacking libpcre2-32-0:s390x (10.42-4ubuntu3) ... 242s Selecting previously unselected package libpcre2-posix3:s390x. 242s Preparing to unpack .../070-libpcre2-posix3_10.42-4ubuntu3_s390x.deb ... 242s Unpacking libpcre2-posix3:s390x (10.42-4ubuntu3) ... 242s Selecting previously unselected package libpcre2-dev:s390x. 242s Preparing to unpack .../071-libpcre2-dev_10.42-4ubuntu3_s390x.deb ... 242s Unpacking libpcre2-dev:s390x (10.42-4ubuntu3) ... 242s Selecting previously unselected package libpkgconf3:s390x. 242s Preparing to unpack .../072-libpkgconf3_1.8.1-4_s390x.deb ... 242s Unpacking libpkgconf3:s390x (1.8.1-4) ... 242s Selecting previously unselected package zlib1g-dev:s390x. 242s Preparing to unpack .../073-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 242s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 242s Selecting previously unselected package libpng-dev:s390x. 242s Preparing to unpack .../074-libpng-dev_1.6.44-3_s390x.deb ... 242s Unpacking libpng-dev:s390x (1.6.44-3) ... 242s Selecting previously unselected package libreadline-dev:s390x. 242s Preparing to unpack .../075-libreadline-dev_8.2-6_s390x.deb ... 242s Unpacking libreadline-dev:s390x (8.2-6) ... 242s Selecting previously unselected package node-bootstrap-sass. 242s Preparing to unpack .../076-node-bootstrap-sass_3.4.3-2_all.deb ... 242s Unpacking node-bootstrap-sass (3.4.3-2) ... 242s Selecting previously unselected package node-html5shiv. 242s Preparing to unpack .../077-node-html5shiv_3.7.3+dfsg-5_all.deb ... 242s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 242s Selecting previously unselected package node-normalize.css. 242s Preparing to unpack .../078-node-normalize.css_8.0.1-5_all.deb ... 242s Unpacking node-normalize.css (8.0.1-5) ... 242s Selecting previously unselected package pandoc-data. 242s Preparing to unpack .../079-pandoc-data_3.1.11.1-3build1_all.deb ... 242s Unpacking pandoc-data (3.1.11.1-3build1) ... 242s Selecting previously unselected package pandoc. 242s Preparing to unpack .../080-pandoc_3.1.11.1+ds-2_s390x.deb ... 242s Unpacking pandoc (3.1.11.1+ds-2) ... 243s Selecting previously unselected package liblzma-dev:s390x. 243s Preparing to unpack .../081-liblzma-dev_5.6.3-1_s390x.deb ... 243s Unpacking liblzma-dev:s390x (5.6.3-1) ... 243s Selecting previously unselected package pkgconf-bin. 243s Preparing to unpack .../082-pkgconf-bin_1.8.1-4_s390x.deb ... 243s Unpacking pkgconf-bin (1.8.1-4) ... 243s Selecting previously unselected package pkgconf:s390x. 243s Preparing to unpack .../083-pkgconf_1.8.1-4_s390x.deb ... 243s Unpacking pkgconf:s390x (1.8.1-4) ... 243s Selecting previously unselected package libtirpc-dev:s390x. 243s Preparing to unpack .../084-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 243s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 243s Selecting previously unselected package r-base-dev. 243s Preparing to unpack .../085-r-base-dev_4.4.2-1build1_all.deb ... 243s Unpacking r-base-dev (4.4.2-1build1) ... 243s Selecting previously unselected package pkg-r-autopkgtest. 243s Preparing to unpack .../086-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 243s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 243s Selecting previously unselected package r-bioc-biocgenerics. 243s Preparing to unpack .../087-r-bioc-biocgenerics_0.52.0-2_all.deb ... 243s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 243s Selecting previously unselected package r-bioc-s4vectors. 243s Preparing to unpack .../088-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 243s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 243s Selecting previously unselected package r-bioc-iranges. 243s Preparing to unpack .../089-r-bioc-iranges_2.40.1-2_s390x.deb ... 243s Unpacking r-bioc-iranges (2.40.1-2) ... 243s Selecting previously unselected package r-bioc-zlibbioc. 243s Preparing to unpack .../090-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 243s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 243s Selecting previously unselected package r-bioc-xvector. 243s Preparing to unpack .../091-r-bioc-xvector_0.46.0-2_s390x.deb ... 243s Unpacking r-bioc-xvector (0.46.0-2) ... 243s Selecting previously unselected package r-cran-curl. 243s Preparing to unpack .../092-r-cran-curl_6.1.0+dfsg-1_s390x.deb ... 243s Unpacking r-cran-curl (6.1.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-mime. 243s Preparing to unpack .../093-r-cran-mime_0.12-2_s390x.deb ... 243s Unpacking r-cran-mime (0.12-2) ... 243s Selecting previously unselected package r-cran-sys. 243s Preparing to unpack .../094-r-cran-sys_3.4.3-1_s390x.deb ... 243s Unpacking r-cran-sys (3.4.3-1) ... 243s Selecting previously unselected package r-cran-askpass. 243s Preparing to unpack .../095-r-cran-askpass_1.2.1-1_s390x.deb ... 243s Unpacking r-cran-askpass (1.2.1-1) ... 243s Selecting previously unselected package r-cran-openssl. 243s Preparing to unpack .../096-r-cran-openssl_2.2.0+dfsg-1_s390x.deb ... 243s Unpacking r-cran-openssl (2.2.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-httr. 243s Preparing to unpack .../097-r-cran-httr_1.4.7+dfsg-1_all.deb ... 243s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 243s Selecting previously unselected package r-bioc-ucsc.utils. 243s Preparing to unpack .../098-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 243s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 243s Selecting previously unselected package r-bioc-genomeinfodbdata. 243s Preparing to unpack .../099-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 243s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 243s Selecting previously unselected package r-bioc-genomeinfodb. 243s Preparing to unpack .../100-r-bioc-genomeinfodb_1.42.1+dfsg-2_all.deb ... 243s Unpacking r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 243s Selecting previously unselected package r-bioc-biostrings. 243s Preparing to unpack .../101-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 243s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 243s Selecting previously unselected package r-cran-base64enc. 243s Preparing to unpack .../102-r-cran-base64enc_0.1-3-3_s390x.deb ... 243s Unpacking r-cran-base64enc (0.1-3-3) ... 243s Selecting previously unselected package r-cran-bh. 243s Preparing to unpack .../103-r-cran-bh_1.84.0-1_all.deb ... 243s Unpacking r-cran-bh (1.84.0-1) ... 244s Selecting previously unselected package r-cran-bigmemory.sri. 244s Preparing to unpack .../104-r-cran-bigmemory.sri_0.1.8-1_all.deb ... 244s Unpacking r-cran-bigmemory.sri (0.1.8-1) ... 244s Selecting previously unselected package r-cran-uuid. 244s Preparing to unpack .../105-r-cran-uuid_1.2-1-1_s390x.deb ... 244s Unpacking r-cran-uuid (1.2-1-1) ... 244s Selecting previously unselected package r-cran-bigmemory. 244s Preparing to unpack .../106-r-cran-bigmemory_4.6.4-1_s390x.deb ... 244s Unpacking r-cran-bigmemory (4.6.4-1) ... 244s Selecting previously unselected package r-cran-bitops. 244s Preparing to unpack .../107-r-cran-bitops_1.0-9-1_s390x.deb ... 244s Unpacking r-cran-bitops (1.0-9-1) ... 244s Selecting previously unselected package r-cran-fastmap. 244s Preparing to unpack .../108-r-cran-fastmap_1.2.0-1_s390x.deb ... 244s Unpacking r-cran-fastmap (1.2.0-1) ... 244s Selecting previously unselected package r-cran-cachem. 244s Preparing to unpack .../109-r-cran-cachem_1.1.0-1_s390x.deb ... 244s Unpacking r-cran-cachem (1.1.0-1) ... 244s Selecting previously unselected package r-cran-htmltools. 244s Preparing to unpack .../110-r-cran-htmltools_0.5.8.1-1_s390x.deb ... 244s Unpacking r-cran-htmltools (0.5.8.1-1) ... 244s Selecting previously unselected package r-cran-jquerylib. 244s Preparing to unpack .../111-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 244s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 244s Selecting previously unselected package r-cran-memoise. 244s Preparing to unpack .../112-r-cran-memoise_2.0.1-1_all.deb ... 244s Unpacking r-cran-memoise (2.0.1-1) ... 244s Selecting previously unselected package r-cran-rappdirs. 244s Preparing to unpack .../113-r-cran-rappdirs_0.3.3-1_s390x.deb ... 244s Unpacking r-cran-rappdirs (0.3.3-1) ... 244s Selecting previously unselected package r-cran-sass. 244s Preparing to unpack .../114-r-cran-sass_0.4.9+dfsg-1_s390x.deb ... 244s Unpacking r-cran-sass (0.4.9+dfsg-1) ... 244s Selecting previously unselected package r-cran-bslib. 244s Preparing to unpack .../115-r-cran-bslib_0.7.0+dfsg-1_all.deb ... 244s Unpacking r-cran-bslib (0.7.0+dfsg-1) ... 244s Selecting previously unselected package r-cran-commonmark. 244s Preparing to unpack .../116-r-cran-commonmark_1.9.2-2_s390x.deb ... 244s Unpacking r-cran-commonmark (1.9.2-2) ... 244s Selecting previously unselected package r-cran-cpp11. 244s Preparing to unpack .../117-r-cran-cpp11_0.5.0-1_all.deb ... 244s Unpacking r-cran-cpp11 (0.5.0-1) ... 244s Selecting previously unselected package r-cran-fontawesome. 244s Preparing to unpack .../118-r-cran-fontawesome_0.5.2-1_all.deb ... 244s Unpacking r-cran-fontawesome (0.5.2-1) ... 244s Selecting previously unselected package r-cran-xfun. 244s Preparing to unpack .../119-r-cran-xfun_0.50+dfsg-1_s390x.deb ... 244s Unpacking r-cran-xfun (0.50+dfsg-1) ... 244s Selecting previously unselected package r-cran-highr. 244s Preparing to unpack .../120-r-cran-highr_0.11+dfsg-1_all.deb ... 244s Unpacking r-cran-highr (0.11+dfsg-1) ... 244s Selecting previously unselected package r-cran-later. 244s Preparing to unpack .../121-r-cran-later_1.4.1+dfsg-1_s390x.deb ... 244s Unpacking r-cran-later (1.4.1+dfsg-1) ... 244s Selecting previously unselected package r-cran-promises. 244s Preparing to unpack .../122-r-cran-promises_1.3.2+dfsg-1_s390x.deb ... 244s Unpacking r-cran-promises (1.3.2+dfsg-1) ... 244s Selecting previously unselected package r-cran-httpuv. 244s Preparing to unpack .../123-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ... 244s Unpacking r-cran-httpuv (1.6.15+dfsg-1) ... 244s Selecting previously unselected package r-cran-lattice. 244s Preparing to unpack .../124-r-cran-lattice_0.22-6-1_s390x.deb ... 244s Unpacking r-cran-lattice (0.22-6-1) ... 244s Selecting previously unselected package r-cran-matrix. 244s Preparing to unpack .../125-r-cran-matrix_1.7-2-1_s390x.deb ... 244s Unpacking r-cran-matrix (1.7-2-1) ... 244s Selecting previously unselected package r-cran-pkgconfig. 244s Preparing to unpack .../126-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 244s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 244s Selecting previously unselected package r-cran-vctrs. 244s Preparing to unpack .../127-r-cran-vctrs_0.6.5-1_s390x.deb ... 244s Unpacking r-cran-vctrs (0.6.5-1) ... 244s Selecting previously unselected package r-cran-igraph. 244s Preparing to unpack .../128-r-cran-igraph_2.1.3-1_s390x.deb ... 244s Unpacking r-cran-igraph (2.1.3-1) ... 244s Selecting previously unselected package r-cran-yaml. 244s Preparing to unpack .../129-r-cran-yaml_2.3.10-1_s390x.deb ... 244s Unpacking r-cran-yaml (2.3.10-1) ... 244s Selecting previously unselected package libjs-mathjax. 244s Preparing to unpack .../130-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 244s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 244s Selecting previously unselected package r-cran-knitr. 244s Preparing to unpack .../131-r-cran-knitr_1.49+dfsg-1_all.deb ... 244s Unpacking r-cran-knitr (1.49+dfsg-1) ... 245s Selecting previously unselected package r-cran-ncdf4. 245s Preparing to unpack .../132-r-cran-ncdf4_1.23-1_s390x.deb ... 245s Unpacking r-cran-ncdf4 (1.23-1) ... 245s Selecting previously unselected package r-cran-rcurl. 245s Preparing to unpack .../133-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 245s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 245s Selecting previously unselected package r-cran-tinytex. 245s Preparing to unpack .../134-r-cran-tinytex_0.54-1_all.deb ... 245s Unpacking r-cran-tinytex (0.54-1) ... 245s Selecting previously unselected package libjs-modernizr. 245s Preparing to unpack .../135-libjs-modernizr_3.13.0-0.1_all.deb ... 245s Unpacking libjs-modernizr (3.13.0-0.1) ... 245s Selecting previously unselected package r-cran-xtable. 245s Preparing to unpack .../136-r-cran-xtable_1%3a1.8-4-2_all.deb ... 245s Unpacking r-cran-xtable (1:1.8-4-2) ... 245s Selecting previously unselected package r-cran-sourcetools. 245s Preparing to unpack .../137-r-cran-sourcetools_0.1.7-1-1_s390x.deb ... 245s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 245s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 245s Preparing to unpack .../138-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 245s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 245s Selecting previously unselected package r-cran-shiny. 245s Preparing to unpack .../139-r-cran-shiny_1.9.1+dfsg-1_all.deb ... 245s Unpacking r-cran-shiny (1.9.1+dfsg-1) ... 245s Selecting previously unselected package r-cran-rmarkdown. 245s Preparing to unpack .../140-r-cran-rmarkdown_2.29+dfsg-1_all.deb ... 245s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ... 245s Selecting previously unselected package r-cran-xml. 245s Preparing to unpack .../141-r-cran-xml_3.99-0.18-1_s390x.deb ... 245s Unpacking r-cran-xml (3.99-0.18-1) ... 245s Setting up libjs-json (0~20221030+~1.0.8-1) ... 245s Setting up javascript-common (11+nmu1) ... 245s Setting up r-cran-curl (6.1.0+dfsg-1) ... 245s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 245s Setting up r-cran-bigmemory.sri (0.1.8-1) ... 245s Setting up libncurses-dev:s390x (6.5-2) ... 245s Setting up r-bioc-biocgenerics (0.52.0-2) ... 245s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 245s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 245s Setting up libjs-popper.js (1.16.1+ds-6) ... 245s Setting up r-cran-uuid (1.2-1-1) ... 245s Setting up r-cran-xfun (0.50+dfsg-1) ... 245s Setting up r-cran-sys (3.4.3-1) ... 245s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 245s Setting up r-cran-mime (0.12-2) ... 245s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 245s Setting up r-cran-base64enc (0.1-3-3) ... 245s Setting up r-cran-yaml (2.3.10-1) ... 245s Setting up node-html5shiv (3.7.3+dfsg-5) ... 245s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 245s Setting up libreadline-dev:s390x (8.2-6) ... 245s Setting up libjs-modernizr (3.13.0-0.1) ... 245s Setting up r-cran-xtable (1:1.8-4-2) ... 245s Setting up r-cran-bitops (1.0-9-1) ... 245s Setting up libpcre2-16-0:s390x (10.42-4ubuntu3) ... 245s Setting up libaec0:s390x (1.1.3-1) ... 245s Setting up libjs-es5-shim (4.6.7-2) ... 245s Setting up r-cran-askpass (1.2.1-1) ... 245s Setting up r-cran-fastmap (1.2.0-1) ... 245s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 245s Setting up libpcre2-32-0:s390x (10.42-4ubuntu3) ... 245s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 245s Setting up libpkgconf3:s390x (1.8.1-4) ... 245s Setting up r-cran-cpp11 (0.5.0-1) ... 245s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 245s Setting up libjs-d3 (3.5.17-4) ... 245s Setting up libmpc3:s390x (1.3.1-1build2) ... 245s Setting up icu-devtools (76.1-1ubuntu2) ... 245s Setting up r-cran-sourcetools (0.1.7-1-1) ... 245s Setting up pkgconf-bin (1.8.1-4) ... 245s Setting up r-cran-later (1.4.1+dfsg-1) ... 245s Setting up r-cran-lattice (0.22-6-1) ... 245s Setting up libltdl7:s390x (2.5.4-2) ... 245s Setting up r-cran-htmltools (0.5.8.1-1) ... 245s Setting up r-cran-tinytex (0.54-1) ... 245s Setting up liblzma-dev:s390x (5.6.3-1) ... 245s Setting up libubsan1:s390x (14.2.0-13ubuntu1) ... 245s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 245s Setting up r-cran-xml (3.99-0.18-1) ... 245s Setting up libpcre2-posix3:s390x (10.42-4ubuntu3) ... 245s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 245s Setting up libasan8:s390x (14.2.0-13ubuntu1) ... 245s Setting up r-cran-cachem (1.1.0-1) ... 245s Setting up libsuitesparseconfig7:s390x (1:7.8.3+dfsg-2) ... 245s Setting up liblua5.4-0:s390x (5.4.7-1) ... 245s Setting up node-bootstrap-sass (3.4.3-2) ... 245s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 245s Setting up r-bioc-iranges (2.40.1-2) ... 245s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 245s Setting up r-cran-commonmark (1.9.2-2) ... 245s Setting up pandoc-data (3.1.11.1-3build1) ... 245s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 245s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 245s Setting up libisl23:s390x (0.27-1) ... 245s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 245s Setting up libdeflate-dev:s390x (1.23-1) ... 245s Setting up node-normalize.css (8.0.1-5) ... 245s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 245s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 245s Setting up libcc1-0:s390x (14.2.0-13ubuntu1) ... 245s Setting up r-cran-vctrs (0.6.5-1) ... 245s Setting up r-cran-rappdirs (0.3.3-1) ... 245s Setting up libblas-dev:s390x (3.12.0-4) ... 245s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 245s Setting up libsz2:s390x (1.1.3-1) ... 245s Setting up dctrl-tools (2.24-3build3) ... 245s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 245s Setting up libitm1:s390x (14.2.0-13ubuntu1) ... 245s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 245s Setting up libbz2-dev:s390x (1.0.8-6) ... 245s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 245s Setting up r-cran-openssl (2.2.0+dfsg-1) ... 245s Setting up libamd3:s390x (1:7.8.3+dfsg-2) ... 245s Setting up libpcre2-dev:s390x (10.42-4ubuntu3) ... 245s Setting up libcolamd3:s390x (1:7.8.3+dfsg-2) ... 245s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 245s Setting up libpng-dev:s390x (1.6.44-3) ... 245s Setting up r-cran-highr (0.11+dfsg-1) ... 245s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 245s Setting up r-cran-fontawesome (0.5.2-1) ... 245s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 245s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 245s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 245s Setting up pkgconf:s390x (1.8.1-4) ... 245s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 245s Setting up pandoc (3.1.11.1+ds-2) ... 245s Setting up libglpk40:s390x (5.0-1build2) ... 245s Setting up r-cran-httr (1.4.7+dfsg-1) ... 245s Setting up r-cran-memoise (2.0.1-1) ... 245s Setting up liblapack-dev:s390x (3.12.0-4) ... 245s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 245s Setting up r-cran-promises (1.3.2+dfsg-1) ... 245s Setting up r-cran-matrix (1.7-2-1) ... 245s Setting up cpp-14-s390x-linux-gnu (14.2.0-13ubuntu1) ... 245s Setting up cpp-14 (14.2.0-13ubuntu1) ... 245s Setting up r-bioc-xvector (0.46.0-2) ... 245s Setting up r-cran-knitr (1.49+dfsg-1) ... 245s Setting up libhdf5-310:s390x (1.14.5+repack-3) ... 245s Setting up r-cran-sass (0.4.9+dfsg-1) ... 245s Setting up libgcc-14-dev:s390x (14.2.0-13ubuntu1) ... 245s Setting up libstdc++-14-dev:s390x (14.2.0-13ubuntu1) ... 245s Setting up libgfortran-14-dev:s390x (14.2.0-13ubuntu1) ... 245s Setting up libhdf5-hl-310:s390x (1.14.5+repack-3) ... 245s Setting up libnetcdf19t64:s390x (1:4.9.2-6ubuntu2) ... 245s Setting up libboost1.83-dev:s390x (1.83.0-4ubuntu2) ... 245s Setting up cpp-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 245s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 245s Setting up r-cran-httpuv (1.6.15+dfsg-1) ... 245s Setting up r-cran-igraph (2.1.3-1) ... 245s Setting up gcc-14-s390x-linux-gnu (14.2.0-13ubuntu1) ... 245s Setting up gcc-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 245s Setting up r-bioc-genomeinfodb (1.42.1+dfsg-2) ... 245s Setting up r-cran-bslib (0.7.0+dfsg-1) ... 245s Setting up g++-14-s390x-linux-gnu (14.2.0-13ubuntu1) ... 245s Setting up cpp (4:14.1.0-2ubuntu1) ... 245s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ... 245s Setting up r-cran-bh (1.84.0-1) ... 245s Setting up r-cran-ncdf4 (1.23-1) ... 245s Setting up gfortran-14-s390x-linux-gnu (14.2.0-13ubuntu1) ... 245s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 245s Setting up r-cran-bigmemory (4.6.4-1) ... 245s Setting up g++-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 245s Setting up r-cran-shiny (1.9.1+dfsg-1) ... 245s Setting up gcc-14 (14.2.0-13ubuntu1) ... 245s Setting up r-cran-rmarkdown (2.29+dfsg-1) ... 245s Setting up g++-14 (14.2.0-13ubuntu1) ... 245s Setting up gfortran-14 (14.2.0-13ubuntu1) ... 245s Setting up gfortran-s390x-linux-gnu (4:14.1.0-2ubuntu1) ... 245s Setting up gcc (4:14.1.0-2ubuntu1) ... 245s Setting up g++ (4:14.1.0-2ubuntu1) ... 245s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 245s Setting up build-essential (12.10ubuntu1) ... 245s Setting up gfortran (4:14.1.0-2ubuntu1) ... 245s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 245s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 245s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 245s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 245s Setting up r-base-dev (4.4.2-1build1) ... 245s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 245s Processing triggers for fontconfig (2.15.0-1.1ubuntu2) ... 245s Processing triggers for libc-bin (2.40-4ubuntu1) ... 245s Processing triggers for man-db (2.13.0-1) ... 246s Processing triggers for install-info (7.1.1-1) ... 248s autopkgtest [09:58:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 248s autopkgtest [09:58:07]: test pkg-r-autopkgtest: [----------------------- 249s Test: Try to load the R library bio3d 249s 249s R version 4.4.2 (2024-10-31) -- "Pile of Leaves" 249s Copyright (C) 2024 The R Foundation for Statistical Computing 249s Platform: s390x-ibm-linux-gnu 249s 249s R is free software and comes with ABSOLUTELY NO WARRANTY. 249s You are welcome to redistribute it under certain conditions. 249s Type 'license()' or 'licence()' for distribution details. 249s 249s R is a collaborative project with many contributors. 249s Type 'contributors()' for more information and 249s 'citation()' on how to cite R or R packages in publications. 249s 249s Type 'demo()' for some demos, 'help()' for on-line help, or 249s 'help.start()' for an HTML browser interface to help. 249s Type 'q()' to quit R. 249s 249s > library('bio3d') 249s > 249s > 249s Other tests are currently unsupported! 249s They will be progressively added. 249s autopkgtest [09:58:08]: test pkg-r-autopkgtest: -----------------------] 256s autopkgtest [09:58:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 256s pkg-r-autopkgtest PASS 258s autopkgtest [09:58:17]: @@@@@@@@@@@@@@@@@@@@ summary 258s run-unit-test PASS 258s pkg-r-autopkgtest PASS 300s nova [W] Using flock in prodstack6-s390x 300s Creating nova instance adt-plucky-s390x-r-cran-bio3d-20250129-095359-juju-7f2275-prod-proposed-migration-environment-15-99b692dc-0a15-432d-b5f6-62fbea0ef25b from image adt/ubuntu-plucky-s390x-server-20250129.img (UUID 8f3d4093-a529-467c-b4b5-532d117c4cd1)... 300s nova [W] Timed out waiting for 4d6a2035-4d9e-448b-a8a2-63e827fbeb60 to get deleted.