0s autopkgtest [17:49:48]: starting date and time: 2025-03-15 17:49:48+0000
  0s autopkgtest [17:49:48]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:49:48]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.jnti9eea/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-xvector --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-4.secgroup --name adt-plucky-s390x-r-bioc-xvector-20250315-174948-juju-7f2275-prod-proposed-migration-environment-2-c5c0c4e7-e5f7-41f6-9275-ca2f736a47c2 --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
408s autopkgtest [17:56:36]: testbed dpkg architecture: s390x
408s autopkgtest [17:56:36]: testbed apt version: 2.9.33
408s autopkgtest [17:56:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
408s autopkgtest [17:56:36]: testbed release detected to be: None
409s autopkgtest [17:56:37]: updating testbed package index (apt update)
410s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
410s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
410s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
410s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
410s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
410s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
411s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
411s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
411s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
411s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
411s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
411s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
411s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
411s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
411s Fetched 1073 kB in 2s (668 kB/s)
412s Reading package lists...
413s Reading package lists...
413s Building dependency tree...
413s Reading state information...
413s Calculating upgrade...
413s Calculating upgrade...
413s The following packages were automatically installed and are no longer required:
413s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
413s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
413s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
413s   linux-tools-6.11.0-8-generic
413s Use 'sudo apt autoremove' to remove them.
413s The following packages will be upgraded:
413s   pinentry-curses python3-jinja2 strace
413s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
413s Need to get 652 kB of archives.
413s After this operation, 27.6 kB of additional disk space will be used.
413s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
414s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
414s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
414s Fetched 652 kB in 1s (657 kB/s)
414s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
414s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
414s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
414s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
414s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
414s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
415s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
415s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
415s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
415s Setting up strace (6.13+ds-1ubuntu1) ...
415s Processing triggers for man-db (2.13.0-1) ...
415s Reading package lists...
415s Building dependency tree...
415s Reading state information...
416s Solving dependencies...
416s The following packages will be REMOVED:
416s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
416s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
416s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
416s   linux-tools-6.11.0-8-generic*
416s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
416s After this operation, 167 MB disk space will be freed.
416s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
416s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
416s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
416s Removing libpython3.12t64:s390x (3.12.9-1) ...
416s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
416s Removing libnsl2:s390x (1.3.0-3build3) ...
416s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
416s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
416s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
417s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
417s Processing triggers for libc-bin (2.41-1ubuntu1) ...
417s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
417s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
417s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
417s autopkgtest [17:56:45]: upgrading testbed (apt dist-upgrade and autopurge)
418s Reading package lists...
418s Building dependency tree...
418s Reading state information...
418s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
418s Starting 2 pkgProblemResolver with broken count: 0
418s Done
418s Entering ResolveByKeep
418s 
418s Calculating upgrade...
418s The following packages will be upgraded:
418s   libc-bin libc-dev-bin libc6 libc6-dev locales
419s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
419s Need to get 9512 kB of archives.
419s After this operation, 8192 B of additional disk space will be used.
419s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
421s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
421s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
424s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
424s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
429s Preconfiguring packages ...
429s Fetched 9512 kB in 10s (946 kB/s)
429s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
429s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
429s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
429s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
429s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
429s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
429s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
429s Setting up libc6:s390x (2.41-1ubuntu2) ...
429s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
429s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
429s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
429s Setting up libc-bin (2.41-1ubuntu2) ...
429s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
429s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
429s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
429s Setting up locales (2.41-1ubuntu2) ...
430s Generating locales (this might take a while)...
431s   en_US.UTF-8... done
431s Generation complete.
431s Setting up libc-dev-bin (2.41-1ubuntu2) ...
431s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
431s Processing triggers for man-db (2.13.0-1) ...
432s Processing triggers for systemd (257.3-1ubuntu3) ...
432s Reading package lists...
432s Building dependency tree...
432s Reading state information...
433s Starting pkgProblemResolver with broken count: 0
433s Starting 2 pkgProblemResolver with broken count: 0
433s Done
433s Solving dependencies...
433s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
433s autopkgtest [17:57:01]: rebooting testbed after setup commands that affected boot
453s autopkgtest [17:57:21]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
455s autopkgtest [17:57:23]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-xvector
457s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-xvector 0.46.0-2 (dsc) [2200 B]
457s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-xvector 0.46.0-2 (tar) [70.2 kB]
457s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-xvector 0.46.0-2 (diff) [4820 B]
457s gpgv: Signature made Sun Jan 12 11:46:10 2025 UTC
457s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
457s gpgv:                issuer "crusoe@debian.org"
457s gpgv: Can't check signature: No public key
457s dpkg-source: warning: cannot verify inline signature for ./r-bioc-xvector_0.46.0-2.dsc: no acceptable signature found
457s autopkgtest [17:57:25]: testing package r-bioc-xvector version 0.46.0-2
458s autopkgtest [17:57:26]: build not needed
460s autopkgtest [17:57:28]: test pkg-r-autopkgtest: preparing testbed
461s Reading package lists...
461s Building dependency tree...
461s Reading state information...
461s Starting pkgProblemResolver with broken count: 0
461s Starting 2 pkgProblemResolver with broken count: 0
461s Done
461s The following NEW packages will be installed:
461s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
461s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
461s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
461s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
461s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8
461s   libblas-dev libblas3 libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev
461s   libdeflate0 libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev
461s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
461s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
461s   libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblzma-dev libmpc3
461s   libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
461s   libpaper-utils libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
461s   libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev
461s   libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 libthai-data libthai0
461s   libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxcb-render0 libxcb-shm0
461s   libxft2 libxrender1 libxss1 libxt6t64 pkg-r-autopkgtest pkgconf pkgconf-bin
461s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biostrings
461s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors
461s   r-bioc-ucsc.utils r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
461s   r-cran-crayon r-cran-curl r-cran-httr r-cran-jsonlite r-cran-mime
461s   r-cran-openssl r-cran-r6 r-cran-runit r-cran-sys unzip x11-common xdg-utils
461s   zip zlib1g-dev
461s 0 upgraded, 114 newly installed, 0 to remove and 0 not upgraded.
461s Need to get 160 MB of archives.
461s After this operation, 405 MB of additional disk space will be used.
461s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
462s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
462s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
470s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
470s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
470s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
470s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
470s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
471s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
471s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
473s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
474s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
475s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
492s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
492s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
492s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
492s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
495s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
505s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
505s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
505s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
505s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
505s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
505s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
505s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
506s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
507s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
507s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
507s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
507s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
507s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
508s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
518s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
518s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
518s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
518s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
518s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
518s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
518s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
518s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
519s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
519s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
519s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
519s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
519s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
519s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
519s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
519s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
519s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
520s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
520s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
520s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
530s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
531s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
531s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
531s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
531s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
531s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
533s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
539s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
539s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
539s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
539s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
539s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
539s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
539s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
539s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
539s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
540s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
540s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
540s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
540s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
541s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
541s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
541s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
542s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
542s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
542s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
542s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
542s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
543s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
543s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
543s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
543s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
543s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
544s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
544s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
544s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
544s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
562s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
562s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
562s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
562s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
562s Get:94 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
562s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
562s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
562s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
563s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
564s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
564s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
565s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
565s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
565s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
566s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
566s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
566s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
566s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
566s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
566s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
567s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
576s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
579s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
579s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
588s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
588s Preconfiguring packages ...
588s Fetched 160 MB in 2min 7s (1267 kB/s)
588s Selecting previously unselected package libisl23:s390x.
588s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
588s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
588s Unpacking libisl23:s390x (0.27-1) ...
588s Selecting previously unselected package libmpc3:s390x.
588s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ...
588s Unpacking libmpc3:s390x (1.3.1-1build2) ...
588s Selecting previously unselected package cpp-14-s390x-linux-gnu.
588s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
588s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package cpp-14.
589s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package cpp-s390x-linux-gnu.
589s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
589s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
589s Selecting previously unselected package cpp.
589s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
589s Unpacking cpp (4:14.2.0-1ubuntu1) ...
589s Selecting previously unselected package libcc1-0:s390x.
589s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
589s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ...
589s Selecting previously unselected package libgomp1:s390x.
589s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
589s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
589s Selecting previously unselected package libitm1:s390x.
589s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ...
589s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ...
589s Selecting previously unselected package libasan8:s390x.
589s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ...
589s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ...
589s Selecting previously unselected package libubsan1:s390x.
589s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
589s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ...
589s Selecting previously unselected package libgcc-14-dev:s390x.
589s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package gcc-14-s390x-linux-gnu.
589s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package gcc-14.
589s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package gcc-s390x-linux-gnu.
589s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
589s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
589s Selecting previously unselected package gcc.
589s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
589s Unpacking gcc (4:14.2.0-1ubuntu1) ...
589s Selecting previously unselected package libstdc++-14-dev:s390x.
589s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package g++-14-s390x-linux-gnu.
589s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package g++-14.
589s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ...
589s Unpacking g++-14 (14.2.0-17ubuntu3) ...
589s Selecting previously unselected package g++-s390x-linux-gnu.
589s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
589s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
589s Selecting previously unselected package g++.
589s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
589s Unpacking g++ (4:14.2.0-1ubuntu1) ...
589s Selecting previously unselected package build-essential.
589s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ...
589s Unpacking build-essential (12.10ubuntu1) ...
589s Selecting previously unselected package dctrl-tools.
589s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ...
589s Unpacking dctrl-tools (2.24-3build3) ...
589s Selecting previously unselected package libfreetype6:s390x.
589s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
589s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
589s Selecting previously unselected package fonts-dejavu-mono.
589s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ...
589s Unpacking fonts-dejavu-mono (2.37-8) ...
589s Selecting previously unselected package fonts-dejavu-core.
589s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ...
589s Unpacking fonts-dejavu-core (2.37-8) ...
589s Selecting previously unselected package fontconfig-config.
589s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
590s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
590s Selecting previously unselected package libfontconfig1:s390x.
590s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
590s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
590s Selecting previously unselected package fontconfig.
590s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
590s Unpacking fontconfig (2.15.0-2ubuntu1) ...
590s Selecting previously unselected package libgfortran5:s390x.
590s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
590s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
590s Selecting previously unselected package libgfortran-14-dev:s390x.
590s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
590s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
590s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
590s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
590s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
590s Selecting previously unselected package gfortran-14.
590s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
590s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
590s Selecting previously unselected package gfortran-s390x-linux-gnu.
590s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
590s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
590s Selecting previously unselected package gfortran.
590s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
590s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
590s Selecting previously unselected package icu-devtools.
590s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ...
590s Unpacking icu-devtools (76.1-1ubuntu2) ...
590s Selecting previously unselected package libblas3:s390x.
590s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ...
590s Unpacking libblas3:s390x (3.12.1-2) ...
590s Selecting previously unselected package libblas-dev:s390x.
590s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ...
590s Unpacking libblas-dev:s390x (3.12.1-2) ...
590s Selecting previously unselected package libbz2-dev:s390x.
590s Preparing to unpack .../038-libbz2-dev_1.0.8-6_s390x.deb ...
590s Unpacking libbz2-dev:s390x (1.0.8-6) ...
590s Selecting previously unselected package libpixman-1-0:s390x.
590s Preparing to unpack .../039-libpixman-1-0_0.44.0-3_s390x.deb ...
590s Unpacking libpixman-1-0:s390x (0.44.0-3) ...
590s Selecting previously unselected package libxcb-render0:s390x.
590s Preparing to unpack .../040-libxcb-render0_1.17.0-2_s390x.deb ...
590s Unpacking libxcb-render0:s390x (1.17.0-2) ...
590s Selecting previously unselected package libxcb-shm0:s390x.
590s Preparing to unpack .../041-libxcb-shm0_1.17.0-2_s390x.deb ...
590s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
590s Selecting previously unselected package libxrender1:s390x.
590s Preparing to unpack .../042-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
590s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
590s Selecting previously unselected package libcairo2:s390x.
590s Preparing to unpack .../043-libcairo2_1.18.2-2_s390x.deb ...
590s Unpacking libcairo2:s390x (1.18.2-2) ...
590s Selecting previously unselected package libdatrie1:s390x.
590s Preparing to unpack .../044-libdatrie1_0.2.13-3build1_s390x.deb ...
590s Unpacking libdatrie1:s390x (0.2.13-3build1) ...
590s Selecting previously unselected package libdeflate0:s390x.
590s Preparing to unpack .../045-libdeflate0_1.23-1_s390x.deb ...
590s Unpacking libdeflate0:s390x (1.23-1) ...
590s Selecting previously unselected package libdeflate-dev:s390x.
590s Preparing to unpack .../046-libdeflate-dev_1.23-1_s390x.deb ...
590s Unpacking libdeflate-dev:s390x (1.23-1) ...
590s Selecting previously unselected package libgraphite2-3:s390x.
590s Preparing to unpack .../047-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
590s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
590s Selecting previously unselected package libharfbuzz0b:s390x.
590s Preparing to unpack .../048-libharfbuzz0b_10.2.0-1_s390x.deb ...
590s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
590s Selecting previously unselected package x11-common.
590s Preparing to unpack .../049-x11-common_1%3a7.7+23ubuntu3_all.deb ...
590s Unpacking x11-common (1:7.7+23ubuntu3) ...
590s Selecting previously unselected package libice6:s390x.
590s Preparing to unpack .../050-libice6_2%3a1.1.1-1_s390x.deb ...
590s Unpacking libice6:s390x (2:1.1.1-1) ...
590s Selecting previously unselected package libicu-dev:s390x.
590s Preparing to unpack .../051-libicu-dev_76.1-1ubuntu2_s390x.deb ...
590s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
590s Selecting previously unselected package libjpeg-turbo8:s390x.
590s Preparing to unpack .../052-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
590s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
590s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
590s Preparing to unpack .../053-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
590s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
590s Selecting previously unselected package libjpeg8:s390x.
590s Preparing to unpack .../054-libjpeg8_8c-2ubuntu11_s390x.deb ...
590s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
590s Selecting previously unselected package libjpeg8-dev:s390x.
590s Preparing to unpack .../055-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
590s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
590s Selecting previously unselected package libjpeg-dev:s390x.
590s Preparing to unpack .../056-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
590s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
590s Selecting previously unselected package liblapack3:s390x.
590s Preparing to unpack .../057-liblapack3_3.12.1-2_s390x.deb ...
590s Unpacking liblapack3:s390x (3.12.1-2) ...
590s Selecting previously unselected package liblapack-dev:s390x.
590s Preparing to unpack .../058-liblapack-dev_3.12.1-2_s390x.deb ...
590s Unpacking liblapack-dev:s390x (3.12.1-2) ...
591s Selecting previously unselected package libncurses-dev:s390x.
591s Preparing to unpack .../059-libncurses-dev_6.5+20250216-2_s390x.deb ...
591s Unpacking libncurses-dev:s390x (6.5+20250216-2) ...
591s Selecting previously unselected package libthai-data.
591s Preparing to unpack .../060-libthai-data_0.1.29-2build1_all.deb ...
591s Unpacking libthai-data (0.1.29-2build1) ...
591s Selecting previously unselected package libthai0:s390x.
591s Preparing to unpack .../061-libthai0_0.1.29-2build1_s390x.deb ...
591s Unpacking libthai0:s390x (0.1.29-2build1) ...
591s Selecting previously unselected package libpango-1.0-0:s390x.
591s Preparing to unpack .../062-libpango-1.0-0_1.56.2-1_s390x.deb ...
591s Unpacking libpango-1.0-0:s390x (1.56.2-1) ...
591s Selecting previously unselected package libpangoft2-1.0-0:s390x.
591s Preparing to unpack .../063-libpangoft2-1.0-0_1.56.2-1_s390x.deb ...
591s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ...
591s Selecting previously unselected package libpangocairo-1.0-0:s390x.
591s Preparing to unpack .../064-libpangocairo-1.0-0_1.56.2-1_s390x.deb ...
591s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ...
591s Selecting previously unselected package libpaper2:s390x.
591s Preparing to unpack .../065-libpaper2_2.2.5-0.3_s390x.deb ...
591s Unpacking libpaper2:s390x (2.2.5-0.3) ...
591s Selecting previously unselected package libpaper-utils.
591s Preparing to unpack .../066-libpaper-utils_2.2.5-0.3_s390x.deb ...
591s Unpacking libpaper-utils (2.2.5-0.3) ...
591s Selecting previously unselected package libpcre2-16-0:s390x.
591s Preparing to unpack .../067-libpcre2-16-0_10.45-1_s390x.deb ...
591s Unpacking libpcre2-16-0:s390x (10.45-1) ...
591s Selecting previously unselected package libpcre2-32-0:s390x.
591s Preparing to unpack .../068-libpcre2-32-0_10.45-1_s390x.deb ...
591s Unpacking libpcre2-32-0:s390x (10.45-1) ...
591s Selecting previously unselected package libpcre2-posix3:s390x.
591s Preparing to unpack .../069-libpcre2-posix3_10.45-1_s390x.deb ...
591s Unpacking libpcre2-posix3:s390x (10.45-1) ...
591s Selecting previously unselected package libpcre2-dev:s390x.
591s Preparing to unpack .../070-libpcre2-dev_10.45-1_s390x.deb ...
591s Unpacking libpcre2-dev:s390x (10.45-1) ...
591s Selecting previously unselected package libpkgconf3:s390x.
591s Preparing to unpack .../071-libpkgconf3_1.8.1-4_s390x.deb ...
591s Unpacking libpkgconf3:s390x (1.8.1-4) ...
591s Selecting previously unselected package zlib1g-dev:s390x.
591s Preparing to unpack .../072-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ...
591s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
591s Selecting previously unselected package libpng-dev:s390x.
591s Preparing to unpack .../073-libpng-dev_1.6.47-1_s390x.deb ...
591s Unpacking libpng-dev:s390x (1.6.47-1) ...
591s Selecting previously unselected package libreadline-dev:s390x.
591s Preparing to unpack .../074-libreadline-dev_8.2-6_s390x.deb ...
591s Unpacking libreadline-dev:s390x (8.2-6) ...
591s Selecting previously unselected package libsharpyuv0:s390x.
591s Preparing to unpack .../075-libsharpyuv0_1.5.0-0.1_s390x.deb ...
591s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
591s Selecting previously unselected package libsm6:s390x.
591s Preparing to unpack .../076-libsm6_2%3a1.2.4-1_s390x.deb ...
591s Unpacking libsm6:s390x (2:1.2.4-1) ...
591s Selecting previously unselected package libtcl8.6:s390x.
591s Preparing to unpack .../077-libtcl8.6_8.6.16+dfsg-1_s390x.deb ...
591s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ...
591s Selecting previously unselected package libjbig0:s390x.
591s Preparing to unpack .../078-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
591s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
591s Selecting previously unselected package libwebp7:s390x.
591s Preparing to unpack .../079-libwebp7_1.5.0-0.1_s390x.deb ...
591s Unpacking libwebp7:s390x (1.5.0-0.1) ...
591s Selecting previously unselected package libtiff6:s390x.
591s Preparing to unpack .../080-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
591s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
591s Selecting previously unselected package libxft2:s390x.
591s Preparing to unpack .../081-libxft2_2.3.6-1build1_s390x.deb ...
591s Unpacking libxft2:s390x (2.3.6-1build1) ...
591s Selecting previously unselected package libxss1:s390x.
591s Preparing to unpack .../082-libxss1_1%3a1.2.3-1build3_s390x.deb ...
591s Unpacking libxss1:s390x (1:1.2.3-1build3) ...
591s Selecting previously unselected package libtk8.6:s390x.
591s Preparing to unpack .../083-libtk8.6_8.6.16-1_s390x.deb ...
591s Unpacking libtk8.6:s390x (8.6.16-1) ...
591s Selecting previously unselected package libxt6t64:s390x.
591s Preparing to unpack .../084-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ...
591s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ...
591s Selecting previously unselected package zip.
591s Preparing to unpack .../085-zip_3.0-14ubuntu2_s390x.deb ...
591s Unpacking zip (3.0-14ubuntu2) ...
591s Selecting previously unselected package unzip.
591s Preparing to unpack .../086-unzip_6.0-28ubuntu6_s390x.deb ...
591s Unpacking unzip (6.0-28ubuntu6) ...
591s Selecting previously unselected package xdg-utils.
591s Preparing to unpack .../087-xdg-utils_1.2.1-2ubuntu1_all.deb ...
591s Unpacking xdg-utils (1.2.1-2ubuntu1) ...
591s Selecting previously unselected package r-base-core.
591s Preparing to unpack .../088-r-base-core_4.4.3-1_s390x.deb ...
591s Unpacking r-base-core (4.4.3-1) ...
591s Selecting previously unselected package liblzma-dev:s390x.
591s Preparing to unpack .../089-liblzma-dev_5.6.4-1_s390x.deb ...
591s Unpacking liblzma-dev:s390x (5.6.4-1) ...
591s Selecting previously unselected package pkgconf-bin.
591s Preparing to unpack .../090-pkgconf-bin_1.8.1-4_s390x.deb ...
591s Unpacking pkgconf-bin (1.8.1-4) ...
591s Selecting previously unselected package pkgconf:s390x.
591s Preparing to unpack .../091-pkgconf_1.8.1-4_s390x.deb ...
591s Unpacking pkgconf:s390x (1.8.1-4) ...
591s Selecting previously unselected package libtirpc-dev:s390x.
591s Preparing to unpack .../092-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ...
591s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ...
591s Selecting previously unselected package r-base-dev.
591s Preparing to unpack .../093-r-base-dev_4.4.3-1_all.deb ...
591s Unpacking r-base-dev (4.4.3-1) ...
591s Selecting previously unselected package pkg-r-autopkgtest.
591s Preparing to unpack .../094-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
591s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
591s Selecting previously unselected package r-bioc-biocgenerics.
591s Preparing to unpack .../095-r-bioc-biocgenerics_0.52.0-2_all.deb ...
591s Unpacking r-bioc-biocgenerics (0.52.0-2) ...
591s Selecting previously unselected package r-bioc-s4vectors.
591s Preparing to unpack .../096-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ...
591s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
591s Selecting previously unselected package r-bioc-iranges.
591s Preparing to unpack .../097-r-bioc-iranges_2.40.1-2_s390x.deb ...
591s Unpacking r-bioc-iranges (2.40.1-2) ...
591s Selecting previously unselected package r-bioc-zlibbioc.
591s Preparing to unpack .../098-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
591s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
591s Selecting previously unselected package r-bioc-xvector.
591s Preparing to unpack .../099-r-bioc-xvector_0.46.0-2_s390x.deb ...
591s Unpacking r-bioc-xvector (0.46.0-2) ...
591s Selecting previously unselected package r-cran-curl.
591s Preparing to unpack .../100-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
591s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
591s Selecting previously unselected package r-cran-jsonlite.
591s Preparing to unpack .../101-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
591s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
591s Selecting previously unselected package r-cran-mime.
591s Preparing to unpack .../102-r-cran-mime_0.12-2_s390x.deb ...
591s Unpacking r-cran-mime (0.12-2) ...
591s Selecting previously unselected package r-cran-sys.
591s Preparing to unpack .../103-r-cran-sys_3.4.3-1_s390x.deb ...
591s Unpacking r-cran-sys (3.4.3-1) ...
591s Selecting previously unselected package r-cran-askpass.
591s Preparing to unpack .../104-r-cran-askpass_1.2.1-1_s390x.deb ...
591s Unpacking r-cran-askpass (1.2.1-1) ...
591s Selecting previously unselected package r-cran-openssl.
591s Preparing to unpack .../105-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ...
591s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
591s Selecting previously unselected package r-cran-r6.
591s Preparing to unpack .../106-r-cran-r6_2.6.1-1_all.deb ...
591s Unpacking r-cran-r6 (2.6.1-1) ...
591s Selecting previously unselected package r-cran-httr.
591s Preparing to unpack .../107-r-cran-httr_1.4.7+dfsg-1_all.deb ...
591s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
591s Selecting previously unselected package r-bioc-ucsc.utils.
591s Preparing to unpack .../108-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
591s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
591s Selecting previously unselected package r-bioc-genomeinfodbdata.
591s Preparing to unpack .../109-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
591s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
592s Selecting previously unselected package r-bioc-genomeinfodb.
592s Preparing to unpack .../110-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
592s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
592s Selecting previously unselected package r-cran-crayon.
592s Preparing to unpack .../111-r-cran-crayon_1.5.3-1_all.deb ...
592s Unpacking r-cran-crayon (1.5.3-1) ...
592s Selecting previously unselected package r-bioc-biostrings.
592s Preparing to unpack .../112-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ...
592s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
592s Selecting previously unselected package r-cran-runit.
592s Preparing to unpack .../113-r-cran-runit_0.4.33-1_all.deb ...
592s Unpacking r-cran-runit (0.4.33-1) ...
592s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
592s Setting up libpixman-1-0:s390x (0.44.0-3) ...
592s Setting up libsharpyuv0:s390x (1.5.0-0.1) ...
592s Setting up libncurses-dev:s390x (6.5+20250216-2) ...
592s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ...
592s Setting up libdatrie1:s390x (0.2.13-3build1) ...
592s Setting up libxcb-render0:s390x (1.17.0-2) ...
592s Setting up unzip (6.0-28ubuntu6) ...
592s Setting up x11-common (1:7.7+23ubuntu3) ...
592s Setting up libdeflate0:s390x (1.23-1) ...
592s Setting up libxcb-shm0:s390x (1.17.0-2) ...
592s Setting up libreadline-dev:s390x (8.2-6) ...
592s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ...
592s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ...
592s Setting up libpcre2-16-0:s390x (10.45-1) ...
592s Setting up zip (3.0-14ubuntu2) ...
592s Setting up libpcre2-32-0:s390x (10.45-1) ...
592s Setting up libblas3:s390x (3.12.1-2) ...
592s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
592s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ...
592s Setting up libpkgconf3:s390x (1.8.1-4) ...
592s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ...
592s Setting up fonts-dejavu-mono (2.37-8) ...
592s Setting up libmpc3:s390x (1.3.1-1build2) ...
592s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ...
592s Setting up icu-devtools (76.1-1ubuntu2) ...
592s Setting up fonts-dejavu-core (2.37-8) ...
592s Setting up pkgconf-bin (1.8.1-4) ...
592s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
592s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ...
592s Setting up libwebp7:s390x (1.5.0-0.1) ...
592s Setting up liblzma-dev:s390x (5.6.4-1) ...
592s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ...
592s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ...
592s Setting up libpcre2-posix3:s390x (10.45-1) ...
592s Setting up libasan8:s390x (15-20250222-0ubuntu1) ...
592s Setting up libharfbuzz0b:s390x (10.2.0-1) ...
592s Setting up libthai-data (0.1.29-2build1) ...
592s Setting up libxss1:s390x (1:1.2.3-1build3) ...
592s Setting up libpaper2:s390x (2.2.5-0.3) ...
592s Setting up libisl23:s390x (0.27-1) ...
592s Setting up libdeflate-dev:s390x (1.23-1) ...
592s Setting up libicu-dev:s390x (76.1-1ubuntu2) ...
592s Setting up xdg-utils (1.2.1-2ubuntu1) ...
592s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
592s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ...
592s Setting up libblas-dev:s390x (3.12.1-2) ...
592s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
592s Setting up dctrl-tools (2.24-3build3) ...
592s Setting up libitm1:s390x (15-20250222-0ubuntu1) ...
592s Setting up libbz2-dev:s390x (1.0.8-6) ...
592s Setting up libjpeg8:s390x (8c-2ubuntu11) ...
592s Setting up libice6:s390x (2:1.1.1-1) ...
592s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
592s Setting up liblapack3:s390x (3.12.1-2) ...
592s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
592s Setting up libpcre2-dev:s390x (10.45-1) ...
592s Setting up fontconfig-config (2.15.0-2ubuntu1) ...
592s Setting up libpng-dev:s390x (1.6.47-1) ...
592s Setting up libpaper-utils (2.2.5-0.3) ...
592s Setting up pkgconf:s390x (1.8.1-4) ...
592s Setting up libthai0:s390x (0.1.29-2build1) ...
592s Setting up liblapack-dev:s390x (3.12.1-2) ...
592s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
592s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
592s Setting up cpp-14 (14.2.0-17ubuntu3) ...
592s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
592s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
592s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
592s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
592s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
592s Setting up libsm6:s390x (2:1.2.4-1) ...
592s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
592s Setting up fontconfig (2.15.0-2ubuntu1) ...
594s Regenerating fonts cache... done.
594s Setting up libxft2:s390x (2.3.6-1build1) ...
594s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
594s Setting up libtk8.6:s390x (8.6.16-1) ...
594s Setting up libpango-1.0-0:s390x (1.56.2-1) ...
594s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
594s Setting up libcairo2:s390x (1.18.2-2) ...
594s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
594s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
594s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
594s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
594s Setting up cpp (4:14.2.0-1ubuntu1) ...
594s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ...
594s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ...
594s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
594s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
594s Setting up gcc-14 (14.2.0-17ubuntu3) ...
594s Setting up r-base-core (4.4.3-1) ...
594s Creating config file /etc/R/Renviron with new version
594s Setting up r-cran-crayon (1.5.3-1) ...
594s Setting up g++-14 (14.2.0-17ubuntu3) ...
594s Setting up r-cran-r6 (2.6.1-1) ...
594s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
594s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
594s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
594s Setting up r-bioc-biocgenerics (0.52.0-2) ...
594s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
594s Setting up r-cran-sys (3.4.3-1) ...
594s Setting up r-cran-mime (0.12-2) ...
594s Setting up gcc (4:14.2.0-1ubuntu1) ...
594s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
594s Setting up r-cran-askpass (1.2.1-1) ...
594s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
594s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
594s Setting up r-cran-runit (0.4.33-1) ...
594s Setting up g++ (4:14.2.0-1ubuntu1) ...
594s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
594s Setting up build-essential (12.10ubuntu1) ...
594s Setting up r-bioc-iranges (2.40.1-2) ...
594s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
594s Setting up gfortran (4:14.2.0-1ubuntu1) ...
594s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
594s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
594s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
594s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
594s Setting up r-cran-httr (1.4.7+dfsg-1) ...
594s Setting up r-bioc-xvector (0.46.0-2) ...
594s Setting up r-base-dev (4.4.3-1) ...
594s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
594s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
594s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
594s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
594s Processing triggers for install-info (7.1.1-1) ...
594s Processing triggers for libc-bin (2.41-1ubuntu2) ...
594s Processing triggers for man-db (2.13.0-1) ...
597s autopkgtest [17:59:45]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
597s autopkgtest [17:59:45]: test pkg-r-autopkgtest: [-----------------------
597s Test: Try to load the R library XVector
597s 
597s R version 4.4.3 (2025-02-28) -- "Trophy Case"
597s Copyright (C) 2025 The R Foundation for Statistical Computing
597s Platform: s390x-ibm-linux-gnu
597s 
597s R is free software and comes with ABSOLUTELY NO WARRANTY.
597s You are welcome to redistribute it under certain conditions.
597s Type 'license()' or 'licence()' for distribution details.
597s 
597s R is a collaborative project with many contributors.
597s Type 'contributors()' for more information and
597s 'citation()' on how to cite R or R packages in publications.
597s 
597s Type 'demo()' for some demos, 'help()' for on-line help, or
597s 'help.start()' for an HTML browser interface to help.
597s Type 'q()' to quit R.
597s 
597s > library('XVector')
597s Loading required package: BiocGenerics
597s 
597s Attaching package: ‘BiocGenerics’
597s 
597s The following objects are masked from ‘package:stats’:
597s 
597s     IQR, mad, sd, var, xtabs
597s 
597s The following objects are masked from ‘package:base’:
597s 
597s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
597s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
597s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
597s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
597s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
597s     table, tapply, union, unique, unsplit, which.max, which.min
597s 
597s Loading required package: S4Vectors
597s Loading required package: stats4
598s 
598s Attaching package: ‘S4Vectors’
598s 
598s The following object is masked from ‘package:utils’:
598s 
598s     findMatches
598s 
598s The following objects are masked from ‘package:base’:
598s 
598s     expand.grid, I, unname
598s 
598s Loading required package: IRanges
599s > 
599s > 
599s Other tests are currently unsupported!
599s They will be progressively added.
599s autopkgtest [17:59:47]: test pkg-r-autopkgtest: -----------------------]
600s autopkgtest [17:59:48]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
600s pkg-r-autopkgtest    PASS
600s autopkgtest [17:59:48]: @@@@@@@@@@@@@@@@@@@@ summary
600s pkg-r-autopkgtest    PASS
605s nova [W] Using flock in prodstack6-s390x
605s Creating nova instance adt-plucky-s390x-r-bioc-xvector-20250315-174948-juju-7f2275-prod-proposed-migration-environment-2-c5c0c4e7-e5f7-41f6-9275-ca2f736a47c2 from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
605s nova [W] nova quota exceeded (attempt #0)
605s nova [W] Timed out waiting for 0c27b688-2834-4333-822d-5624b9f34bd1 to get deleted.