0s autopkgtest [13:00:35]: starting date and time: 2025-03-15 13:00:35+0000
  0s autopkgtest [13:00:35]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [13:00:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cmitwjf1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-s390x-31.secgroup --name adt-plucky-s390x-r-bioc-variantannotation-20250315-130035-juju-7f2275-prod-proposed-migration-environment-2-6c3c0d38-cf5c-4a15-bc8d-bf654ed37e2c --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
146s autopkgtest [13:03:01]: testbed dpkg architecture: s390x
146s autopkgtest [13:03:01]: testbed apt version: 2.9.33
146s autopkgtest [13:03:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup
146s autopkgtest [13:03:01]: testbed release detected to be: None
147s autopkgtest [13:03:02]: updating testbed package index (apt update)
147s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
148s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
148s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
148s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
148s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [410 kB]
148s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
148s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [46.2 kB]
148s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [80.7 kB]
149s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1852 B]
149s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
149s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [335 kB]
149s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [14.4 kB]
149s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
149s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [328 B]
149s Fetched 1034 kB in 2s (579 kB/s)
150s Reading package lists...
150s Reading package lists...
150s Building dependency tree...
150s Reading state information...
150s Calculating upgrade...
151s Calculating upgrade...
151s The following packages were automatically installed and are no longer required:
151s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
151s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
151s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
151s   linux-tools-6.11.0-8-generic
151s Use 'sudo apt autoremove' to remove them.
151s The following packages will be upgraded:
151s   python3-jinja2 strace
151s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
151s Need to get 609 kB of archives.
151s After this operation, 27.6 kB of additional disk space will be used.
151s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
151s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
152s Fetched 609 kB in 1s (610 kB/s)
152s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
152s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
152s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
152s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
152s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
152s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
152s Setting up strace (6.13+ds-1ubuntu1) ...
152s Processing triggers for man-db (2.13.0-1) ...
153s Reading package lists...
153s Building dependency tree...
153s Reading state information...
153s Solving dependencies...
153s The following packages will be REMOVED:
153s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
153s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
153s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
153s   linux-tools-6.11.0-8-generic*
153s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
153s After this operation, 167 MB disk space will be freed.
153s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
153s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
153s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
153s Removing libpython3.12t64:s390x (3.12.9-1) ...
153s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
153s Removing libnsl2:s390x (1.3.0-3build3) ...
153s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
153s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
153s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
154s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
154s Processing triggers for libc-bin (2.41-1ubuntu1) ...
154s (Reading database ... 
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(Reading database ... 56328 files and directories currently installed.)
154s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
154s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
154s autopkgtest [13:03:09]: upgrading testbed (apt dist-upgrade and autopurge)
155s Reading package lists...
155s Building dependency tree...
155s Reading state information...
155s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
155s Starting 2 pkgProblemResolver with broken count: 0
155s Done
155s Entering ResolveByKeep
155s 
155s Calculating upgrade...
155s The following packages will be upgraded:
155s   libc-bin libc-dev-bin libc6 libc6-dev locales
155s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
155s Need to get 9512 kB of archives.
155s After this operation, 8192 B of additional disk space will be used.
155s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
158s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
158s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
161s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
162s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
167s Preconfiguring packages ...
167s Fetched 9512 kB in 11s (827 kB/s)
167s (Reading database ... 
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(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
167s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
167s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
167s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
167s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
167s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
167s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
167s Setting up libc6:s390x (2.41-1ubuntu2) ...
167s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
167s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
167s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
167s Setting up libc-bin (2.41-1ubuntu2) ...
168s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
168s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
168s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
168s Setting up locales (2.41-1ubuntu2) ...
168s Generating locales (this might take a while)...
169s   en_US.UTF-8... done
169s Generation complete.
169s Setting up libc-dev-bin (2.41-1ubuntu2) ...
169s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
169s Processing triggers for man-db (2.13.0-1) ...
169s Processing triggers for systemd (257.3-1ubuntu3) ...
170s Reading package lists...
170s Building dependency tree...
170s Reading state information...
171s Starting pkgProblemResolver with broken count: 0
171s Starting 2 pkgProblemResolver with broken count: 0
171s Done
171s Solving dependencies...
171s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
171s autopkgtest [13:03:26]: rebooting testbed after setup commands that affected boot
175s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
191s autopkgtest [13:03:46]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
194s autopkgtest [13:03:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation
197s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-variantannotation 1.52.0-2 (dsc) [2626 B]
197s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-variantannotation 1.52.0-2 (tar) [2146 kB]
197s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-variantannotation 1.52.0-2 (diff) [8296 B]
198s gpgv: Signature made Mon Jan 13 22:34:03 2025 UTC
198s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
198s gpgv:                issuer "crusoe@debian.org"
198s gpgv: Can't check signature: No public key
198s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.52.0-2.dsc: no acceptable signature found
198s autopkgtest [13:03:53]: testing package r-bioc-variantannotation version 1.52.0-2
198s autopkgtest [13:03:53]: build not needed
200s autopkgtest [13:03:55]: test pkg-r-autopkgtest: preparing testbed
200s Reading package lists...
201s Building dependency tree...
201s Reading state information...
201s Starting pkgProblemResolver with broken count: 0
201s Starting 2 pkgProblemResolver with broken count: 0
201s Done
201s The following NEW packages will be installed:
201s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
201s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
201s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
201s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
201s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
201s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
201s   imagemagick-7-common javascript-common libaom3 libasan8
201s   libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev
201s   libbz2-dev libcairo2 libcc1-0 libdatrie1 libde265-0 libdeflate-dev
201s   libdeflate0 libfftw3-double3 libfontconfig1 libfreetype6 libgcc-14-dev
201s   libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
201s   libheif-plugin-aomdec libheif-plugin-libde265 libheif1 libice6 libicu-dev
201s   libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
201s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4
201s   libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
201s   libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json
201s   libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr
201s   libjs-popper.js libjs-prettify libjs-sifter.js
201s   libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3
201s   liblatex-tounicode-perl liblcms2-2 liblqr-1-0 libltdl7 liblua5.4-0
201s   liblzma-dev libmagick++-7.q16-5 libmagickcore-7.q16-10
201s   libmagickwand-7.q16-10 libmpc3 libmpfi0 libncurses-dev libopenjp2-7
201s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
201s   libpaper2 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
201s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libraw23t64
201s   libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libsynctex2 libtcl8.6
201s   libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev
201s   libtk8.6 libubsan1 libwebp7 libwebpdemux2 libwebpmux3 libxaw7 libxcb-render0
201s   libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64
201s   libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
201s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
201s   r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationhub
201s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
201s   r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biostrings
201s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb
201s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
201s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
201s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
201s   r-bioc-s4vectors r-bioc-snpstats r-bioc-sparsearray
201s   r-bioc-summarizedexperiment r-bioc-ucsc.utils r-bioc-variantannotation
201s   r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc
201s   r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops
201s   r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli
201s   r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11
201s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest
201s   r-cran-dplyr r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
201s   r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
201s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
201s   r-cran-glue r-cran-gtable r-cran-highr r-cran-htmltools r-cran-httpuv
201s   r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr
201s   r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle
201s   r-cran-littler r-cran-magick r-cran-magrittr r-cran-mass r-cran-matrix
201s   r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
201s   r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
201s   r-cran-plogr r-cran-png r-cran-promises r-cran-purrr r-cran-r6
201s   r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-restfulr
201s   r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit
201s   r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools
201s   r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble
201s   r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs
201s   r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable
201s   r-cran-yaml t1utils tex-common texlive-base texlive-bibtex-extra
201s   texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip
201s   zlib1g-dev
201s 0 upgraded, 298 newly installed, 0 to remove and 0 not upgraded.
201s Need to get 483 MB of archives.
201s After this operation, 1502 MB of additional disk space will be used.
201s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
201s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libfftw3-double3 s390x 3.3.10-2fakesync1build1 [511 kB]
202s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
202s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
203s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
204s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
204s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
204s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
204s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libaom3 s390x 3.12.0-1 [1492 kB]
205s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libheif-plugin-aomdec s390x 1.19.7-1 [11.6 kB]
205s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libde265-0 s390x 1.0.15-1build5 [175 kB]
205s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libheif-plugin-libde265 s390x 1.19.7-1 [9054 B]
205s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x libheif1 s390x 1.19.7-1 [415 kB]
206s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
206s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
206s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
206s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x liblcms2-2 s390x 2.16-2 [175 kB]
206s Get:18 http://ftpmaster.internal/ubuntu plucky/universe s390x liblqr-1-0 s390x 0.4.2-2.1build2 [32.6 kB]
206s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x libltdl7 s390x 2.5.4-4 [43.8 kB]
206s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x libopenjp2-7 s390x 2.5.3-2 [207 kB]
206s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x libraw23t64 s390x 0.21.3-1 [415 kB]
207s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
207s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
207s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
207s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpdemux2 s390x 1.5.0-0.1 [12.6 kB]
207s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x libwebpmux3 s390x 1.5.0-0.1 [25.8 kB]
207s Get:27 http://ftpmaster.internal/ubuntu plucky/universe s390x imagemagick-7-common all 8:7.1.1.43+dfsg1-1 [69.7 kB]
207s Get:28 http://ftpmaster.internal/ubuntu plucky/universe s390x libmagickcore-7.q16-10 s390x 8:7.1.1.43+dfsg1-1 [2040 kB]
210s Get:29 http://ftpmaster.internal/ubuntu plucky/universe s390x libmagickwand-7.q16-10 s390x 8:7.1.1.43+dfsg1-1 [375 kB]
210s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
211s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
211s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
220s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
220s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
220s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
220s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
220s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
220s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
223s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
224s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
225s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
242s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
243s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
243s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
243s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
245s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
255s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
255s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
255s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
255s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
255s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
255s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
255s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
256s Get:54 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
256s Get:55 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
261s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
263s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
263s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
264s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
273s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
273s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
273s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
273s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
273s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
273s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
273s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
273s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
273s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
273s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
273s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB]
281s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B]
281s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
281s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
281s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
281s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
281s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
281s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
282s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
282s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
282s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
282s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
282s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
282s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
282s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
291s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
291s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
291s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
291s Get:88 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
291s Get:89 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
291s Get:90 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
291s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
291s Get:92 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
291s Get:93 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
292s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
292s Get:95 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
292s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
292s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
292s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
292s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
292s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
292s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
292s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
292s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
293s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
294s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
299s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
299s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x libmagick++-7.q16-5 s390x 8:7.1.1.43+dfsg1-1 [179 kB]
299s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
299s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
300s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
300s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
300s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.1-1 [253 kB]
300s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.1-1 [50.3 kB]
300s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.1-1 [28.3 kB]
300s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
300s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
300s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
300s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
300s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
300s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
301s Get:121 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
301s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
302s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
302s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
302s Get:125 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
302s Get:126 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
302s Get:127 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
302s Get:128 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
302s Get:129 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
303s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
303s Get:131 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
303s Get:132 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
303s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
303s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
304s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
304s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
304s Get:137 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
304s Get:138 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
304s Get:139 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
304s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
304s Get:141 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
304s Get:142 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
304s Get:143 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
304s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
325s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
325s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
325s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
325s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
325s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
325s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
325s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
362s Get:152 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
362s Get:153 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
362s Get:154 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
362s Get:155 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
362s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
362s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
362s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
362s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB]
364s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB]
365s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB]
367s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB]
367s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB]
368s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB]
368s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
370s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
371s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
371s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
371s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
372s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB]
372s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
372s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
372s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
372s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
372s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB]
372s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB]
372s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB]
373s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB]
373s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
374s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
374s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB]
374s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB]
374s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB]
374s Get:184 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
374s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB]
375s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB]
375s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB]
375s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB]
375s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB]
375s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB]
386s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB]
390s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
390s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB]
404s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB]
404s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB]
408s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB]
408s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
409s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
409s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
409s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
410s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
410s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
411s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyselect s390x 1.2.1+dfsg-1 [222 kB]
411s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dplyr s390x 1.1.4-4 [1537 kB]
412s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-purrr s390x 1.0.4-1 [553 kB]
413s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringi s390x 1.8.4-1build1 [917 kB]
414s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-stringr all 1.5.1-1 [290 kB]
414s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyr s390x 1.3.1-1 [1157 kB]
415s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbplyr all 2.5.0+dfsg-1 [1233 kB]
417s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-filelock s390x 1.0.3-1 [29.2 kB]
417s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocfilecache all 2.14.0+dfsg-2 [300 kB]
417s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
417s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
417s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
417s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
417s Get:216 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationhub all 3.14.0+dfsg-2 [447 kB]
418s Get:217 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB]
418s Get:218 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB]
418s Get:219 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB]
418s Get:220 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
418s Get:221 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
418s Get:222 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB]
419s Get:223 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB]
419s Get:224 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B]
419s Get:225 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB]
420s Get:226 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
420s Get:227 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
420s Get:228 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
421s Get:229 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
421s Get:230 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
421s Get:231 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
421s Get:232 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
427s Get:233 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
428s Get:234 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
428s Get:235 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
428s Get:236 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
429s Get:237 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
432s Get:238 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
433s Get:239 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
433s Get:240 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
433s Get:241 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
433s Get:242 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
435s Get:243 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
435s Get:244 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
435s Get:245 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
436s Get:246 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
436s Get:247 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
436s Get:248 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
437s Get:249 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
437s Get:250 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
439s Get:251 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
440s Get:252 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
441s Get:253 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
441s Get:254 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
441s Get:255 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
449s Get:256 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
469s Get:257 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
470s Get:258 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
546s Get:259 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
547s Get:260 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB]
549s Get:261 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB]
550s Get:262 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB]
550s Get:263 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB]
552s Get:264 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB]
555s Get:265 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
555s Get:266 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
556s Get:267 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
557s Get:268 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
561s Get:269 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB]
561s Get:270 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB]
562s Get:271 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB]
563s Get:272 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB]
564s Get:273 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB]
565s Get:274 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB]
567s Get:275 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB]
568s Get:276 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB]
568s Get:277 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB]
569s Get:278 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB]
573s Get:279 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-bsgenome all 1.74.0-2 [7001 kB]
580s Get:280 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB]
581s Get:281 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-survival s390x 3.8-3-1 [8250 kB]
588s Get:282 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-snpstats s390x 1.56.0+dfsg-2 [8472 kB]
596s Get:283 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-variantannotation s390x 1.52.0-2 [3683 kB]
599s Get:284 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-colorspace s390x 2.1-1+dfsg-1 [1567 kB]
601s Get:285 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-farver s390x 2.1.2-1 [1353 kB]
602s Get:286 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-gtable all 0.3.6+dfsg-1 [199 kB]
602s Get:287 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-isoband s390x 0.2.7-1 [1481 kB]
603s Get:288 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mass s390x 7.3-64-1 [1113 kB]
604s Get:289 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-nlme s390x 3.1.167-1 [2323 kB]
606s Get:290 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mgcv s390x 1.9-1-1 [3348 kB]
609s Get:291 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-labeling all 0.4.3-1 [62.1 kB]
609s Get:292 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-munsell all 0.5.1-1 [213 kB]
609s Get:293 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
609s Get:294 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-viridislite all 0.4.2-2 [1088 kB]
610s Get:295 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-scales all 1.3.0-1 [603 kB]
611s Get:296 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ggplot2 all 3.5.1+dfsg-1 [3940 kB]
614s Get:297 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magick s390x 2.8.5+dfsg-1build1 [527 kB]
614s Get:298 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-runit all 0.4.33-1 [377 kB]
616s Preconfiguring packages ...
616s Fetched 483 MB in 6min 54s (1166 kB/s)
616s Selecting previously unselected package libgomp1:s390x.
616s (Reading database ... 
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(Reading database ... 60%
(Reading database ... 65%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
616s Preparing to unpack .../000-libgomp1_15-20250222-0ubuntu1_s390x.deb ...
616s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ...
616s Selecting previously unselected package libfftw3-double3:s390x.
616s Preparing to unpack .../001-libfftw3-double3_3.3.10-2fakesync1build1_s390x.deb ...
616s Unpacking libfftw3-double3:s390x (3.3.10-2fakesync1build1) ...
616s Selecting previously unselected package libfreetype6:s390x.
616s Preparing to unpack .../002-libfreetype6_2.13.3+dfsg-1_s390x.deb ...
616s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ...
616s Selecting previously unselected package fonts-dejavu-mono.
616s Preparing to unpack .../003-fonts-dejavu-mono_2.37-8_all.deb ...
616s Unpacking fonts-dejavu-mono (2.37-8) ...
616s Selecting previously unselected package fonts-dejavu-core.
616s Preparing to unpack .../004-fonts-dejavu-core_2.37-8_all.deb ...
616s Unpacking fonts-dejavu-core (2.37-8) ...
616s Selecting previously unselected package fontconfig-config.
616s Preparing to unpack .../005-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ...
616s Unpacking fontconfig-config (2.15.0-2ubuntu1) ...
616s Selecting previously unselected package libfontconfig1:s390x.
616s Preparing to unpack .../006-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ...
616s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ...
616s Selecting previously unselected package libsharpyuv0:s390x.
616s Preparing to unpack .../007-libsharpyuv0_1.5.0-0.1_s390x.deb ...
616s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ...
616s Selecting previously unselected package libaom3:s390x.
616s Preparing to unpack .../008-libaom3_3.12.0-1_s390x.deb ...
616s Unpacking libaom3:s390x (3.12.0-1) ...
616s Selecting previously unselected package libheif-plugin-aomdec:s390x.
616s Preparing to unpack .../009-libheif-plugin-aomdec_1.19.7-1_s390x.deb ...
616s Unpacking libheif-plugin-aomdec:s390x (1.19.7-1) ...
616s Selecting previously unselected package libde265-0:s390x.
616s Preparing to unpack .../010-libde265-0_1.0.15-1build5_s390x.deb ...
616s Unpacking libde265-0:s390x (1.0.15-1build5) ...
616s Selecting previously unselected package libheif-plugin-libde265:s390x.
616s Preparing to unpack .../011-libheif-plugin-libde265_1.19.7-1_s390x.deb ...
616s Unpacking libheif-plugin-libde265:s390x (1.19.7-1) ...
616s Selecting previously unselected package libheif1:s390x.
616s Preparing to unpack .../012-libheif1_1.19.7-1_s390x.deb ...
616s Unpacking libheif1:s390x (1.19.7-1) ...
616s Selecting previously unselected package libjbig0:s390x.
616s Preparing to unpack .../013-libjbig0_2.1-6.1ubuntu2_s390x.deb ...
616s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ...
616s Selecting previously unselected package libjpeg-turbo8:s390x.
616s Preparing to unpack .../014-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
616s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ...
616s Selecting previously unselected package libjpeg8:s390x.
616s Preparing to unpack .../015-libjpeg8_8c-2ubuntu11_s390x.deb ...
616s Unpacking libjpeg8:s390x (8c-2ubuntu11) ...
616s Selecting previously unselected package liblcms2-2:s390x.
616s Preparing to unpack .../016-liblcms2-2_2.16-2_s390x.deb ...
616s Unpacking liblcms2-2:s390x (2.16-2) ...
616s Selecting previously unselected package liblqr-1-0:s390x.
616s Preparing to unpack .../017-liblqr-1-0_0.4.2-2.1build2_s390x.deb ...
616s Unpacking liblqr-1-0:s390x (0.4.2-2.1build2) ...
616s Selecting previously unselected package libltdl7:s390x.
616s Preparing to unpack .../018-libltdl7_2.5.4-4_s390x.deb ...
616s Unpacking libltdl7:s390x (2.5.4-4) ...
616s Selecting previously unselected package libopenjp2-7:s390x.
616s Preparing to unpack .../019-libopenjp2-7_2.5.3-2_s390x.deb ...
616s Unpacking libopenjp2-7:s390x (2.5.3-2) ...
616s Selecting previously unselected package libraw23t64:s390x.
616s Preparing to unpack .../020-libraw23t64_0.21.3-1_s390x.deb ...
616s Unpacking libraw23t64:s390x (0.21.3-1) ...
616s Selecting previously unselected package libdeflate0:s390x.
616s Preparing to unpack .../021-libdeflate0_1.23-1_s390x.deb ...
616s Unpacking libdeflate0:s390x (1.23-1) ...
616s Selecting previously unselected package libwebp7:s390x.
616s Preparing to unpack .../022-libwebp7_1.5.0-0.1_s390x.deb ...
616s Unpacking libwebp7:s390x (1.5.0-0.1) ...
616s Selecting previously unselected package libtiff6:s390x.
616s Preparing to unpack .../023-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ...
616s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
616s Selecting previously unselected package libwebpdemux2:s390x.
616s Preparing to unpack .../024-libwebpdemux2_1.5.0-0.1_s390x.deb ...
616s Unpacking libwebpdemux2:s390x (1.5.0-0.1) ...
616s Selecting previously unselected package libwebpmux3:s390x.
616s Preparing to unpack .../025-libwebpmux3_1.5.0-0.1_s390x.deb ...
616s Unpacking libwebpmux3:s390x (1.5.0-0.1) ...
616s Selecting previously unselected package imagemagick-7-common.
616s Preparing to unpack .../026-imagemagick-7-common_8%3a7.1.1.43+dfsg1-1_all.deb ...
616s Unpacking imagemagick-7-common (8:7.1.1.43+dfsg1-1) ...
616s Selecting previously unselected package libmagickcore-7.q16-10:s390x.
616s Preparing to unpack .../027-libmagickcore-7.q16-10_8%3a7.1.1.43+dfsg1-1_s390x.deb ...
616s Unpacking libmagickcore-7.q16-10:s390x (8:7.1.1.43+dfsg1-1) ...
616s Selecting previously unselected package libmagickwand-7.q16-10:s390x.
616s Preparing to unpack .../028-libmagickwand-7.q16-10_8%3a7.1.1.43+dfsg1-1_s390x.deb ...
616s Unpacking libmagickwand-7.q16-10:s390x (8:7.1.1.43+dfsg1-1) ...
616s Selecting previously unselected package libisl23:s390x.
616s Preparing to unpack .../029-libisl23_0.27-1_s390x.deb ...
616s Unpacking libisl23:s390x (0.27-1) ...
616s Selecting previously unselected package libmpc3:s390x.
616s Preparing to unpack .../030-libmpc3_1.3.1-1build2_s390x.deb ...
616s Unpacking libmpc3:s390x (1.3.1-1build2) ...
616s Selecting previously unselected package cpp-14-s390x-linux-gnu.
616s Preparing to unpack .../031-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
616s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
616s Selecting previously unselected package cpp-14.
616s Preparing to unpack .../032-cpp-14_14.2.0-17ubuntu3_s390x.deb ...
616s Unpacking cpp-14 (14.2.0-17ubuntu3) ...
616s Selecting previously unselected package cpp-s390x-linux-gnu.
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616s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
616s Selecting previously unselected package cpp.
616s Preparing to unpack .../034-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ...
616s Unpacking cpp (4:14.2.0-1ubuntu1) ...
616s Selecting previously unselected package libcc1-0:s390x.
616s Preparing to unpack .../035-libcc1-0_15-20250222-0ubuntu1_s390x.deb ...
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616s Selecting previously unselected package libitm1:s390x.
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616s Selecting previously unselected package libasan8:s390x.
616s Preparing to unpack .../037-libasan8_15-20250222-0ubuntu1_s390x.deb ...
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616s Selecting previously unselected package libubsan1:s390x.
616s Preparing to unpack .../038-libubsan1_15-20250222-0ubuntu1_s390x.deb ...
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616s Selecting previously unselected package libgcc-14-dev:s390x.
616s Preparing to unpack .../039-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ...
616s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package gcc-14-s390x-linux-gnu.
617s Preparing to unpack .../040-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package gcc-14.
617s Preparing to unpack .../041-gcc-14_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking gcc-14 (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package gcc-s390x-linux-gnu.
617s Preparing to unpack .../042-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
617s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
617s Selecting previously unselected package gcc.
617s Preparing to unpack .../043-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ...
617s Unpacking gcc (4:14.2.0-1ubuntu1) ...
617s Selecting previously unselected package libstdc++-14-dev:s390x.
617s Preparing to unpack .../044-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package g++-14-s390x-linux-gnu.
617s Preparing to unpack .../045-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package g++-14.
617s Preparing to unpack .../046-g++-14_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking g++-14 (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package g++-s390x-linux-gnu.
617s Preparing to unpack .../047-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
617s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
617s Selecting previously unselected package g++.
617s Preparing to unpack .../048-g++_4%3a14.2.0-1ubuntu1_s390x.deb ...
617s Unpacking g++ (4:14.2.0-1ubuntu1) ...
617s Selecting previously unselected package build-essential.
617s Preparing to unpack .../049-build-essential_12.10ubuntu1_s390x.deb ...
617s Unpacking build-essential (12.10ubuntu1) ...
617s Selecting previously unselected package dctrl-tools.
617s Preparing to unpack .../050-dctrl-tools_2.24-3build3_s390x.deb ...
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617s Selecting previously unselected package fontconfig.
617s Preparing to unpack .../051-fontconfig_2.15.0-2ubuntu1_s390x.deb ...
617s Unpacking fontconfig (2.15.0-2ubuntu1) ...
617s Selecting previously unselected package fonts-font-awesome.
617s Preparing to unpack .../052-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
617s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
617s Selecting previously unselected package fonts-glyphicons-halflings.
617s Preparing to unpack .../053-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
617s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
617s Selecting previously unselected package fonts-lmodern.
617s Preparing to unpack .../054-fonts-lmodern_2.005-1_all.deb ...
617s Unpacking fonts-lmodern (2.005-1) ...
617s Selecting previously unselected package fonts-mathjax.
617s Preparing to unpack .../055-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
617s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
617s Selecting previously unselected package libgfortran5:s390x.
617s Preparing to unpack .../056-libgfortran5_15-20250222-0ubuntu1_s390x.deb ...
617s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ...
617s Selecting previously unselected package libgfortran-14-dev:s390x.
617s Preparing to unpack .../057-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
617s Selecting previously unselected package gfortran-14-s390x-linux-gnu.
617s Preparing to unpack .../058-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ...
617s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package gfortran-14.
618s Preparing to unpack .../059-gfortran-14_14.2.0-17ubuntu3_s390x.deb ...
618s Unpacking gfortran-14 (14.2.0-17ubuntu3) ...
618s Selecting previously unselected package gfortran-s390x-linux-gnu.
618s Preparing to unpack .../060-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ...
618s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package gfortran.
618s Preparing to unpack .../061-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ...
618s Unpacking gfortran (4:14.2.0-1ubuntu1) ...
618s Selecting previously unselected package icu-devtools.
618s Preparing to unpack .../062-icu-devtools_76.1-1ubuntu2_s390x.deb ...
618s Unpacking icu-devtools (76.1-1ubuntu2) ...
618s Selecting previously unselected package javascript-common.
618s Preparing to unpack .../063-javascript-common_12_all.deb ...
618s Unpacking javascript-common (12) ...
618s Selecting previously unselected package libio-string-perl.
618s Preparing to unpack .../064-libio-string-perl_1.08-4_all.deb ...
618s Unpacking libio-string-perl (1.08-4) ...
618s Selecting previously unselected package liblatex-tounicode-perl.
618s Preparing to unpack .../065-liblatex-tounicode-perl_0.55-1_all.deb ...
618s Unpacking liblatex-tounicode-perl (0.55-1) ...
618s Selecting previously unselected package libbibtex-parser-perl.
618s Preparing to unpack .../066-libbibtex-parser-perl_1.05+dfsg-1_all.deb ...
618s Unpacking libbibtex-parser-perl (1.05+dfsg-1) ...
618s Selecting previously unselected package libblas3:s390x.
618s Preparing to unpack .../067-libblas3_3.12.1-2_s390x.deb ...
618s Unpacking libblas3:s390x (3.12.1-2) ...
618s Selecting previously unselected package libblas-dev:s390x.
618s Preparing to unpack .../068-libblas-dev_3.12.1-2_s390x.deb ...
618s Unpacking libblas-dev:s390x (3.12.1-2) ...
618s Selecting previously unselected package libboost1.83-dev:s390x.
618s Preparing to unpack .../069-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ...
618s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
619s Selecting previously unselected package libboost-dev:s390x.
619s Preparing to unpack .../070-libboost-dev_1.83.0.2ubuntu1_s390x.deb ...
619s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ...
619s Selecting previously unselected package libbz2-dev:s390x.
619s Preparing to unpack .../071-libbz2-dev_1.0.8-6_s390x.deb ...
619s Unpacking libbz2-dev:s390x (1.0.8-6) ...
619s Selecting previously unselected package libpixman-1-0:s390x.
619s Preparing to unpack .../072-libpixman-1-0_0.44.0-3_s390x.deb ...
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619s Selecting previously unselected package libxcb-render0:s390x.
619s Preparing to unpack .../073-libxcb-render0_1.17.0-2_s390x.deb ...
619s Unpacking libxcb-render0:s390x (1.17.0-2) ...
619s Selecting previously unselected package libxcb-shm0:s390x.
619s Preparing to unpack .../074-libxcb-shm0_1.17.0-2_s390x.deb ...
619s Unpacking libxcb-shm0:s390x (1.17.0-2) ...
619s Selecting previously unselected package libxrender1:s390x.
619s Preparing to unpack .../075-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ...
619s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ...
619s Selecting previously unselected package libcairo2:s390x.
619s Preparing to unpack .../076-libcairo2_1.18.2-2_s390x.deb ...
619s Unpacking libcairo2:s390x (1.18.2-2) ...
619s Selecting previously unselected package libdatrie1:s390x.
619s Preparing to unpack .../077-libdatrie1_0.2.13-3build1_s390x.deb ...
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619s Selecting previously unselected package libdeflate-dev:s390x.
619s Preparing to unpack .../078-libdeflate-dev_1.23-1_s390x.deb ...
619s Unpacking libdeflate-dev:s390x (1.23-1) ...
619s Selecting previously unselected package libgraphite2-3:s390x.
619s Preparing to unpack .../079-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ...
619s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ...
619s Selecting previously unselected package libharfbuzz0b:s390x.
619s Preparing to unpack .../080-libharfbuzz0b_10.2.0-1_s390x.deb ...
619s Unpacking libharfbuzz0b:s390x (10.2.0-1) ...
619s Selecting previously unselected package x11-common.
619s Preparing to unpack .../081-x11-common_1%3a7.7+23ubuntu3_all.deb ...
619s Unpacking x11-common (1:7.7+23ubuntu3) ...
619s Selecting previously unselected package libice6:s390x.
619s Preparing to unpack .../082-libice6_2%3a1.1.1-1_s390x.deb ...
619s Unpacking libice6:s390x (2:1.1.1-1) ...
619s Selecting previously unselected package libicu-dev:s390x.
619s Preparing to unpack .../083-libicu-dev_76.1-1ubuntu2_s390x.deb ...
619s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ...
619s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
619s Preparing to unpack .../084-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ...
619s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ...
619s Selecting previously unselected package libjpeg8-dev:s390x.
619s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_s390x.deb ...
619s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ...
619s Selecting previously unselected package libjpeg-dev:s390x.
619s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_s390x.deb ...
619s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ...
619s Selecting previously unselected package libjs-bootstrap.
619s Preparing to unpack .../087-libjs-bootstrap_3.4.1+dfsg-3_all.deb ...
619s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ...
619s Selecting previously unselected package libjs-popper.js.
619s Preparing to unpack .../088-libjs-popper.js_1.16.1+ds-6_all.deb ...
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619s Selecting previously unselected package libjs-bootstrap4.
619s Preparing to unpack .../089-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ...
619s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ...
619s Selecting previously unselected package libjs-d3.
619s Preparing to unpack .../090-libjs-d3_3.5.17-4_all.deb ...
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619s Selecting previously unselected package libjs-es5-shim.
619s Preparing to unpack .../091-libjs-es5-shim_4.6.7-2_all.deb ...
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619s Selecting previously unselected package libjs-highlight.js.
619s Preparing to unpack .../092-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ...
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619s Selecting previously unselected package libjs-jquery.
619s Preparing to unpack .../093-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ...
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619s Selecting previously unselected package libjs-jquery-datatables.
619s Preparing to unpack .../094-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ...
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619s Selecting previously unselected package libjs-sifter.js.
619s Preparing to unpack .../095-libjs-sifter.js_0.6.0+dfsg-3_all.deb ...
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619s Selecting previously unselected package libjs-microplugin.js.
619s Preparing to unpack .../096-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ...
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619s Selecting previously unselected package libjs-jquery-selectize.js.
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619s Selecting previously unselected package libjs-jquery-ui.
619s Preparing to unpack .../098-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ...
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619s Selecting previously unselected package libjs-json.
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619s Selecting previously unselected package libjs-lunr.
619s Preparing to unpack .../100-libjs-lunr_2.3.9~dfsg-2_all.deb ...
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619s Selecting previously unselected package libjs-prettify.
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619s Selecting previously unselected package libkpathsea6:s390x.
619s Preparing to unpack .../102-libkpathsea6_2024.20240313.70630+ds-5build2_s390x.deb ...
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619s Selecting previously unselected package liblapack3:s390x.
619s Preparing to unpack .../103-liblapack3_3.12.1-2_s390x.deb ...
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619s Selecting previously unselected package liblapack-dev:s390x.
619s Preparing to unpack .../104-liblapack-dev_3.12.1-2_s390x.deb ...
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619s Selecting previously unselected package liblua5.4-0:s390x.
619s Preparing to unpack .../105-liblua5.4-0_5.4.7-1_s390x.deb ...
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619s Selecting previously unselected package libmagick++-7.q16-5:s390x.
619s Preparing to unpack .../106-libmagick++-7.q16-5_8%3a7.1.1.43+dfsg1-1_s390x.deb ...
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619s Selecting previously unselected package libmpfi0:s390x.
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620s Selecting previously unselected package libncurses-dev:s390x.
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620s Selecting previously unselected package libthai-data.
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620s Selecting previously unselected package libthai0:s390x.
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620s Selecting previously unselected package libpango-1.0-0:s390x.
620s Preparing to unpack .../111-libpango-1.0-0_1.56.1-1_s390x.deb ...
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620s Selecting previously unselected package libpangoft2-1.0-0:s390x.
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620s Selecting previously unselected package libpangocairo-1.0-0:s390x.
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620s Selecting previously unselected package libpaper2:s390x.
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620s Selecting previously unselected package libpcre2-16-0:s390x.
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620s Selecting previously unselected package libpcre2-32-0:s390x.
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620s Selecting previously unselected package libpcre2-posix3:s390x.
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620s Selecting previously unselected package libpcre2-dev:s390x.
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620s Selecting previously unselected package libpkgconf3:s390x.
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620s Selecting previously unselected package libpng-dev:s390x.
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620s Selecting previously unselected package libpotrace0:s390x.
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620s Selecting previously unselected package libreadline-dev:s390x.
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620s Selecting previously unselected package libtcl8.6:s390x.
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620s Selecting previously unselected package libxft2:s390x.
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620s Selecting previously unselected package libxss1:s390x.
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620s Selecting previously unselected package libtk8.6:s390x.
620s Preparing to unpack .../133-libtk8.6_8.6.16-1_s390x.deb ...
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620s Selecting previously unselected package libxmu6:s390x.
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620s Selecting previously unselected package libxpm4:s390x.
620s Preparing to unpack .../136-libxpm4_1%3a3.5.17-1build2_s390x.deb ...
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620s Selecting previously unselected package libxaw7:s390x.
620s Preparing to unpack .../137-libxaw7_2%3a1.0.16-1_s390x.deb ...
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620s Selecting previously unselected package libxi6:s390x.
620s Preparing to unpack .../138-libxi6_2%3a1.8.2-1_s390x.deb ...
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620s Selecting previously unselected package libzzip-0-13t64:s390x.
620s Preparing to unpack .../139-libzzip-0-13t64_0.13.78+dfsg.1-0.1_s390x.deb ...
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620s Selecting previously unselected package zip.
620s Preparing to unpack .../140-zip_3.0-14ubuntu2_s390x.deb ...
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620s Selecting previously unselected package xdg-utils.
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620s Selecting previously unselected package r-cran-littler.
620s Preparing to unpack .../144-r-cran-littler_0.3.20-2_s390x.deb ...
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620s Selecting previously unselected package littler.
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620s Selecting previously unselected package pandoc-data.
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620s Preparing to unpack .../150-pandoc_3.1.11.1+ds-2_s390x.deb ...
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621s Selecting previously unselected package liblzma-dev:s390x.
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622s Selecting previously unselected package pkgconf:s390x.
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622s Selecting previously unselected package libtirpc-dev:s390x.
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622s Selecting previously unselected package r-base-dev.
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622s Selecting previously unselected package pkg-r-autopkgtest.
622s Preparing to unpack .../156-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
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622s Selecting previously unselected package r-bioc-biocgenerics.
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622s Selecting previously unselected package r-bioc-biobase.
622s Preparing to unpack .../158-r-bioc-biobase_2.66.0-2_s390x.deb ...
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622s Selecting previously unselected package r-bioc-s4vectors.
622s Preparing to unpack .../159-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ...
622s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ...
622s Selecting previously unselected package r-bioc-iranges.
622s Preparing to unpack .../160-r-bioc-iranges_2.40.1-2_s390x.deb ...
622s Unpacking r-bioc-iranges (2.40.1-2) ...
622s Selecting previously unselected package r-cran-dbi.
622s Preparing to unpack .../161-r-cran-dbi_1.2.3-1_all.deb ...
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622s Selecting previously unselected package r-cran-bit.
622s Preparing to unpack .../162-r-cran-bit_4.6.0+dfsg-1_s390x.deb ...
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622s Selecting previously unselected package r-cran-bit64.
622s Preparing to unpack .../163-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ...
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622s Selecting previously unselected package r-cran-rlang.
622s Preparing to unpack .../164-r-cran-rlang_1.1.5-1_s390x.deb ...
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622s Selecting previously unselected package r-cran-cli.
622s Preparing to unpack .../165-r-cran-cli_3.6.4-1_s390x.deb ...
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622s Selecting previously unselected package r-cran-glue.
622s Preparing to unpack .../166-r-cran-glue_1.8.0-1_s390x.deb ...
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622s Selecting previously unselected package r-cran-lifecycle.
622s Preparing to unpack .../167-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
622s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
622s Selecting previously unselected package r-cran-vctrs.
622s Preparing to unpack .../168-r-cran-vctrs_0.6.5-1_s390x.deb ...
622s Unpacking r-cran-vctrs (0.6.5-1) ...
622s Selecting previously unselected package r-cran-blob.
622s Preparing to unpack .../169-r-cran-blob_1.2.4-1_all.deb ...
622s Unpacking r-cran-blob (1.2.4-1) ...
622s Selecting previously unselected package r-cran-fastmap.
622s Preparing to unpack .../170-r-cran-fastmap_1.2.0-1_s390x.deb ...
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622s Selecting previously unselected package r-cran-cachem.
622s Preparing to unpack .../171-r-cran-cachem_1.1.0-1_s390x.deb ...
622s Unpacking r-cran-cachem (1.1.0-1) ...
622s Selecting previously unselected package r-cran-memoise.
622s Preparing to unpack .../172-r-cran-memoise_2.0.1-1_all.deb ...
622s Unpacking r-cran-memoise (2.0.1-1) ...
622s Selecting previously unselected package r-cran-pkgconfig.
622s Preparing to unpack .../173-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
622s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
622s Selecting previously unselected package r-cran-plogr.
622s Preparing to unpack .../174-r-cran-plogr_0.2.0-3build1_all.deb ...
622s Unpacking r-cran-plogr (0.2.0-3build1) ...
622s Selecting previously unselected package r-cran-cpp11.
622s Preparing to unpack .../175-r-cran-cpp11_0.5.2-1_all.deb ...
622s Unpacking r-cran-cpp11 (0.5.2-1) ...
622s Selecting previously unselected package r-cran-rsqlite.
622s Preparing to unpack .../176-r-cran-rsqlite_2.3.9-1_s390x.deb ...
622s Unpacking r-cran-rsqlite (2.3.9-1) ...
622s Selecting previously unselected package r-cran-curl.
622s Preparing to unpack .../177-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ...
622s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
622s Selecting previously unselected package r-cran-jsonlite.
622s Preparing to unpack .../178-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
622s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ...
622s Selecting previously unselected package r-cran-mime.
622s Preparing to unpack .../179-r-cran-mime_0.12-2_s390x.deb ...
622s Unpacking r-cran-mime (0.12-2) ...
622s Selecting previously unselected package r-cran-sys.
622s Preparing to unpack .../180-r-cran-sys_3.4.3-1_s390x.deb ...
622s Unpacking r-cran-sys (3.4.3-1) ...
622s Selecting previously unselected package r-cran-askpass.
622s Preparing to unpack .../181-r-cran-askpass_1.2.1-1_s390x.deb ...
622s Unpacking r-cran-askpass (1.2.1-1) ...
622s Selecting previously unselected package r-cran-openssl.
622s Preparing to unpack .../182-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ...
622s Unpacking r-cran-openssl (2.3.2+dfsg-1) ...
622s Selecting previously unselected package r-cran-r6.
622s Preparing to unpack .../183-r-cran-r6_2.6.1-1_all.deb ...
622s Unpacking r-cran-r6 (2.6.1-1) ...
622s Selecting previously unselected package r-cran-httr.
622s Preparing to unpack .../184-r-cran-httr_1.4.7+dfsg-1_all.deb ...
622s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
622s Selecting previously unselected package r-cran-png.
622s Preparing to unpack .../185-r-cran-png_0.1-8-1build2_s390x.deb ...
622s Unpacking r-cran-png (0.1-8-1build2) ...
622s Selecting previously unselected package r-bioc-zlibbioc.
622s Preparing to unpack .../186-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ...
622s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ...
622s Selecting previously unselected package r-bioc-xvector.
622s Preparing to unpack .../187-r-bioc-xvector_0.46.0-2_s390x.deb ...
622s Unpacking r-bioc-xvector (0.46.0-2) ...
622s Selecting previously unselected package r-bioc-ucsc.utils.
622s Preparing to unpack .../188-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ...
622s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ...
622s Selecting previously unselected package r-bioc-genomeinfodbdata.
622s Preparing to unpack .../189-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ...
622s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ...
622s Selecting previously unselected package r-bioc-genomeinfodb.
622s Preparing to unpack .../190-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ...
622s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
622s Selecting previously unselected package r-cran-crayon.
622s Preparing to unpack .../191-r-cran-crayon_1.5.3-1_all.deb ...
622s Unpacking r-cran-crayon (1.5.3-1) ...
622s Selecting previously unselected package r-bioc-biostrings.
622s Preparing to unpack .../192-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ...
622s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ...
622s Selecting previously unselected package r-bioc-keggrest.
622s Preparing to unpack .../193-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ...
622s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ...
622s Selecting previously unselected package r-bioc-annotationdbi.
622s Preparing to unpack .../194-r-bioc-annotationdbi_1.68.0-2_all.deb ...
622s Unpacking r-bioc-annotationdbi (1.68.0-2) ...
622s Selecting previously unselected package r-cran-generics.
622s Preparing to unpack .../195-r-cran-generics_0.1.3-1_all.deb ...
622s Unpacking r-cran-generics (0.1.3-1) ...
622s Selecting previously unselected package r-cran-magrittr.
622s Preparing to unpack .../196-r-cran-magrittr_2.0.3-1_s390x.deb ...
622s Unpacking r-cran-magrittr (2.0.3-1) ...
622s Selecting previously unselected package r-cran-utf8.
622s Preparing to unpack .../197-r-cran-utf8_1.2.4-1_s390x.deb ...
622s Unpacking r-cran-utf8 (1.2.4-1) ...
622s Selecting previously unselected package r-cran-pillar.
622s Preparing to unpack .../198-r-cran-pillar_1.10.1+dfsg-1_all.deb ...
622s Unpacking r-cran-pillar (1.10.1+dfsg-1) ...
622s Selecting previously unselected package r-cran-fansi.
622s Preparing to unpack .../199-r-cran-fansi_1.0.5-1_s390x.deb ...
622s Unpacking r-cran-fansi (1.0.5-1) ...
622s Selecting previously unselected package r-cran-tibble.
622s Preparing to unpack .../200-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ...
622s Unpacking r-cran-tibble (3.2.1+dfsg-3) ...
622s Selecting previously unselected package r-cran-withr.
622s Preparing to unpack .../201-r-cran-withr_3.0.2+dfsg-1_all.deb ...
622s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
622s Selecting previously unselected package r-cran-tidyselect.
622s Preparing to unpack .../202-r-cran-tidyselect_1.2.1+dfsg-1_s390x.deb ...
622s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ...
622s Selecting previously unselected package r-cran-dplyr.
622s Preparing to unpack .../203-r-cran-dplyr_1.1.4-4_s390x.deb ...
622s Unpacking r-cran-dplyr (1.1.4-4) ...
622s Selecting previously unselected package r-cran-purrr.
622s Preparing to unpack .../204-r-cran-purrr_1.0.4-1_s390x.deb ...
622s Unpacking r-cran-purrr (1.0.4-1) ...
622s Selecting previously unselected package r-cran-stringi.
622s Preparing to unpack .../205-r-cran-stringi_1.8.4-1build1_s390x.deb ...
622s Unpacking r-cran-stringi (1.8.4-1build1) ...
622s Selecting previously unselected package r-cran-stringr.
622s Preparing to unpack .../206-r-cran-stringr_1.5.1-1_all.deb ...
622s Unpacking r-cran-stringr (1.5.1-1) ...
622s Selecting previously unselected package r-cran-tidyr.
622s Preparing to unpack .../207-r-cran-tidyr_1.3.1-1_s390x.deb ...
622s Unpacking r-cran-tidyr (1.3.1-1) ...
622s Selecting previously unselected package r-cran-dbplyr.
622s Preparing to unpack .../208-r-cran-dbplyr_2.5.0+dfsg-1_all.deb ...
622s Unpacking r-cran-dbplyr (2.5.0+dfsg-1) ...
623s Selecting previously unselected package r-cran-filelock.
623s Preparing to unpack .../209-r-cran-filelock_1.0.3-1_s390x.deb ...
623s Unpacking r-cran-filelock (1.0.3-1) ...
623s Selecting previously unselected package r-bioc-biocfilecache.
623s Preparing to unpack .../210-r-bioc-biocfilecache_2.14.0+dfsg-2_all.deb ...
623s Unpacking r-bioc-biocfilecache (2.14.0+dfsg-2) ...
623s Selecting previously unselected package r-cran-biocmanager.
623s Preparing to unpack .../211-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
623s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
623s Selecting previously unselected package r-bioc-biocversion.
623s Preparing to unpack .../212-r-bioc-biocversion_3.20.0-2_all.deb ...
623s Unpacking r-bioc-biocversion (3.20.0-2) ...
623s Selecting previously unselected package r-cran-rappdirs.
623s Preparing to unpack .../213-r-cran-rappdirs_0.3.3-1_s390x.deb ...
623s Unpacking r-cran-rappdirs (0.3.3-1) ...
623s Selecting previously unselected package r-cran-yaml.
623s Preparing to unpack .../214-r-cran-yaml_2.3.10-1_s390x.deb ...
623s Unpacking r-cran-yaml (2.3.10-1) ...
623s Selecting previously unselected package r-bioc-annotationhub.
623s Preparing to unpack .../215-r-bioc-annotationhub_3.14.0+dfsg-2_all.deb ...
623s Unpacking r-bioc-annotationhub (3.14.0+dfsg-2) ...
623s Selecting previously unselected package r-bioc-biocio.
623s Preparing to unpack .../216-r-bioc-biocio_1.16.0+dfsg-2_all.deb ...
623s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ...
623s Selecting previously unselected package r-cran-formatr.
623s Preparing to unpack .../217-r-cran-formatr_1.14-2_all.deb ...
623s Unpacking r-cran-formatr (1.14-2) ...
623s Selecting previously unselected package r-cran-lambda.r.
623s Preparing to unpack .../218-r-cran-lambda.r_1.2.4-2build1_all.deb ...
623s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
623s Selecting previously unselected package r-cran-futile.options.
623s Preparing to unpack .../219-r-cran-futile.options_1.0.1-3build1_all.deb ...
623s Unpacking r-cran-futile.options (1.0.1-3build1) ...
623s Selecting previously unselected package r-cran-futile.logger.
623s Preparing to unpack .../220-r-cran-futile.logger_1.4.3-4build1_all.deb ...
623s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
623s Selecting previously unselected package r-cran-snow.
623s Preparing to unpack .../221-r-cran-snow_1%3a0.4.4-2_all.deb ...
623s Unpacking r-cran-snow (1:0.4.4-2) ...
623s Selecting previously unselected package r-cran-codetools.
623s Preparing to unpack .../222-r-cran-codetools_0.2-20-1_all.deb ...
623s Unpacking r-cran-codetools (0.2-20-1) ...
623s Selecting previously unselected package r-cran-bh.
623s Preparing to unpack .../223-r-cran-bh_1.84.0-1_all.deb ...
623s Unpacking r-cran-bh (1.84.0-1) ...
623s Selecting previously unselected package r-bioc-biocparallel.
623s Preparing to unpack .../224-r-bioc-biocparallel_1.40.0-2_s390x.deb ...
623s Unpacking r-bioc-biocparallel (1.40.0-2) ...
623s Selecting previously unselected package r-cran-base64enc.
623s Preparing to unpack .../225-r-cran-base64enc_0.1-3-3_s390x.deb ...
623s Unpacking r-cran-base64enc (0.1-3-3) ...
623s Selecting previously unselected package r-cran-digest.
623s Preparing to unpack .../226-r-cran-digest_0.6.37-1_s390x.deb ...
623s Unpacking r-cran-digest (0.6.37-1) ...
623s Selecting previously unselected package r-cran-htmltools.
623s Preparing to unpack .../227-r-cran-htmltools_0.5.8.1-1_s390x.deb ...
623s Unpacking r-cran-htmltools (0.5.8.1-1) ...
623s Selecting previously unselected package r-cran-evaluate.
623s Preparing to unpack .../228-r-cran-evaluate_1.0.3-1_all.deb ...
623s Unpacking r-cran-evaluate (1.0.3-1) ...
623s Selecting previously unselected package r-cran-xfun.
623s Preparing to unpack .../229-r-cran-xfun_0.51+dfsg-1_s390x.deb ...
623s Unpacking r-cran-xfun (0.51+dfsg-1) ...
623s Selecting previously unselected package r-cran-highr.
623s Preparing to unpack .../230-r-cran-highr_0.11+dfsg-1_all.deb ...
623s Unpacking r-cran-highr (0.11+dfsg-1) ...
623s Selecting previously unselected package libjs-mathjax.
623s Preparing to unpack .../231-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
623s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
623s Selecting previously unselected package r-cran-knitr.
623s Preparing to unpack .../232-r-cran-knitr_1.49+dfsg-1_all.deb ...
623s Unpacking r-cran-knitr (1.49+dfsg-1) ...
623s Selecting previously unselected package r-cran-jquerylib.
623s Preparing to unpack .../233-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
623s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
623s Selecting previously unselected package r-cran-fs.
623s Preparing to unpack .../234-r-cran-fs_1.6.5+dfsg-1_s390x.deb ...
623s Unpacking r-cran-fs (1.6.5+dfsg-1) ...
623s Selecting previously unselected package r-cran-sass.
623s Preparing to unpack .../235-r-cran-sass_0.4.9+dfsg-1_s390x.deb ...
623s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
623s Selecting previously unselected package r-cran-bslib.
623s Preparing to unpack .../236-r-cran-bslib_0.8.0+dfsg-1_all.deb ...
623s Unpacking r-cran-bslib (0.8.0+dfsg-1) ...
623s Selecting previously unselected package r-cran-fontawesome.
623s Preparing to unpack .../237-r-cran-fontawesome_0.5.3-1_all.deb ...
623s Unpacking r-cran-fontawesome (0.5.3-1) ...
623s Selecting previously unselected package r-cran-tinytex.
623s Preparing to unpack .../238-r-cran-tinytex_0.56-1_all.deb ...
623s Unpacking r-cran-tinytex (0.56-1) ...
623s Selecting previously unselected package libjs-modernizr.
623s Preparing to unpack .../239-libjs-modernizr_3.13.0-0.1_all.deb ...
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623s Selecting previously unselected package r-cran-pkgkitten.
623s Preparing to unpack .../240-r-cran-pkgkitten_0.2.4-1_all.deb ...
623s Unpacking r-cran-pkgkitten (0.2.4-1) ...
623s Selecting previously unselected package r-cran-rcpp.
623s Preparing to unpack .../241-r-cran-rcpp_1.0.14-1_s390x.deb ...
623s Unpacking r-cran-rcpp (1.0.14-1) ...
623s Selecting previously unselected package r-cran-later.
623s Preparing to unpack .../242-r-cran-later_1.4.1+dfsg-1_s390x.deb ...
623s Unpacking r-cran-later (1.4.1+dfsg-1) ...
623s Selecting previously unselected package r-cran-promises.
623s Preparing to unpack .../243-r-cran-promises_1.3.2+dfsg-1_s390x.deb ...
623s Unpacking r-cran-promises (1.3.2+dfsg-1) ...
623s Selecting previously unselected package r-cran-httpuv.
623s Preparing to unpack .../244-r-cran-httpuv_1.6.15+dfsg-1_s390x.deb ...
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623s Selecting previously unselected package r-cran-xtable.
623s Preparing to unpack .../245-r-cran-xtable_1%3a1.8-4-2_all.deb ...
623s Unpacking r-cran-xtable (1:1.8-4-2) ...
624s Selecting previously unselected package r-cran-sourcetools.
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624s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
624s Selecting previously unselected package r-cran-commonmark.
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624s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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624s Selecting previously unselected package r-cran-shiny.
624s Preparing to unpack .../249-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
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624s Selecting previously unselected package r-cran-rmarkdown.
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624s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
624s Selecting previously unselected package r-cran-bookdown.
624s Preparing to unpack .../251-r-cran-bookdown_0.42+dfsg-1_all.deb ...
624s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
624s Selecting previously unselected package tex-common.
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627s Selecting previously unselected package r-bioc-biocstyle.
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627s Selecting previously unselected package r-bioc-genomicranges.
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627s Selecting previously unselected package r-cran-xml.
627s Preparing to unpack .../260-r-cran-xml_3.99-0.18-1_s390x.deb ...
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627s Selecting previously unselected package r-cran-bitops.
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627s Selecting previously unselected package r-bioc-rhtslib.
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627s Selecting previously unselected package r-bioc-rsamtools.
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627s Selecting previously unselected package r-cran-matrixstats.
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627s Selecting previously unselected package r-bioc-matrixgenerics.
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627s Selecting previously unselected package r-cran-lattice.
627s Preparing to unpack .../266-r-cran-lattice_0.22-6-1_s390x.deb ...
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627s Selecting previously unselected package r-cran-matrix.
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627s Selecting previously unselected package r-cran-abind.
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627s Selecting previously unselected package r-bioc-s4arrays.
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627s Selecting previously unselected package r-bioc-sparsearray.
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627s Selecting previously unselected package r-bioc-delayedarray.
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627s Selecting previously unselected package r-bioc-summarizedexperiment.
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627s Selecting previously unselected package r-bioc-genomicalignments.
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627s Selecting previously unselected package r-cran-rcurl.
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627s Selecting previously unselected package r-bioc-rtracklayer.
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627s Selecting previously unselected package r-bioc-bsgenome.
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627s Selecting previously unselected package r-bioc-genomicfeatures.
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627s Selecting previously unselected package r-cran-survival.
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627s Selecting previously unselected package r-bioc-snpstats.
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629s Setting up libpaper-utils (2.2.5-0.3) ...
629s Setting up libbibtex-parser-perl (1.05+dfsg-1) ...
629s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ...
629s Setting up pkgconf:s390x (1.8.1-4) ...
629s Setting up libthai0:s390x (0.1.29-2build1) ...
629s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
629s Setting up libptexenc1:s390x (2024.20240313.70630+ds-5build2) ...
629s Setting up pandoc (3.1.11.1+ds-2) ...
629s Setting up liblapack-dev:s390x (3.12.1-2) ...
629s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
629s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
629s Setting up libraw23t64:s390x (0.21.3-1) ...
629s Setting up cpp-14 (14.2.0-17ubuntu3) ...
629s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ...
629s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ...
629s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ...
629s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ...
629s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ...
629s Setting up libsm6:s390x (2:1.2.4-1) ...
629s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ...
629s Setting up fontconfig (2.15.0-2ubuntu1) ...
631s Regenerating fonts cache... done.
631s Setting up libxft2:s390x (2.3.6-1build1) ...
631s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ...
631s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
631s Setting up libtk8.6:s390x (8.6.16-1) ...
631s Setting up libpango-1.0-0:s390x (1.56.1-1) ...
631s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ...
631s Setting up libcairo2:s390x (1.18.2-2) ...
631s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
631s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
631s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ...
631s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
631s Setting up cpp (4:14.2.0-1ubuntu1) ...
631s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ...
631s Setting up libpangoft2-1.0-0:s390x (1.56.1-1) ...
631s Setting up libpangocairo-1.0-0:s390x (1.56.1-1) ...
631s Setting up libxmu6:s390x (2:1.1.3-3build2) ...
631s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ...
631s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
631s Setting up libxaw7:s390x (2:1.0.16-1) ...
631s Setting up gcc-14 (14.2.0-17ubuntu3) ...
631s Setting up r-base-core (4.4.3-1) ...
631s Creating config file /etc/R/Renviron with new version
631s Setting up r-cran-crayon (1.5.3-1) ...
631s Setting up r-cran-labeling (0.4.3-1) ...
631s Setting up r-cran-sourcetools (0.1.7-1-1) ...
631s Setting up r-cran-futile.options (1.0.1-3build1) ...
631s Setting up r-cran-lattice (0.22-6-1) ...
631s Setting up r-cran-nlme (3.1.167-1) ...
631s Setting up r-cran-farver (2.1.2-1) ...
631s Setting up r-cran-formatr (1.14-2) ...
631s Setting up r-cran-xml (3.99-0.18-1) ...
631s Setting up r-cran-viridislite (0.4.2-2) ...
631s Setting up texlive-binaries (2024.20240313.70630+ds-5build2) ...
631s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
631s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
631s Setting up r-cran-commonmark (1.9.2-2) ...
631s Setting up g++-14 (14.2.0-17ubuntu3) ...
631s Setting up r-cran-rjson (0.2.23-1) ...
631s Setting up r-cran-r6 (2.6.1-1) ...
631s Setting up r-cran-pkgkitten (0.2.4-1) ...
631s Setting up gfortran-14 (14.2.0-17ubuntu3) ...
631s Setting up texlive-base (2024.20250114-1) ...
631s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
631s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
631s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
631s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
632s Setting up r-cran-magrittr (2.0.3-1) ...
632s Setting up r-cran-rappdirs (0.3.3-1) ...
632s Setting up r-cran-filelock (1.0.3-1) ...
632s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ...
632s Setting up r-cran-littler (0.3.20-2) ...
632s Setting up r-cran-bh (1.84.0-1) ...
632s Setting up r-cran-fs (1.6.5+dfsg-1) ...
632s Setting up r-cran-rcpp (1.0.14-1) ...
632s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ...
632s Setting up r-cran-codetools (0.2-20-1) ...
632s Setting up r-bioc-biocgenerics (0.52.0-2) ...
632s Setting up r-cran-rlang (1.1.5-1) ...
632s Setting up r-cran-matrixstats (1.5.0-1) ...
632s Setting up littler (0.3.20-2) ...
632s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ...
632s Setting up r-bioc-matrixgenerics (1.18.1-1) ...
632s Setting up r-cran-xfun (0.51+dfsg-1) ...
632s Setting up r-cran-sys (3.4.3-1) ...
632s Setting up r-cran-plogr (0.2.0-3build1) ...
632s Setting up r-cran-withr (3.0.2+dfsg-1) ...
632s Setting up r-cran-mime (0.12-2) ...
632s Setting up r-cran-generics (0.1.3-1) ...
632s Setting up r-cran-base64enc (0.1-3-3) ...
632s Setting up r-cran-abind (1.4-8-1) ...
632s Setting up r-cran-digest (0.6.37-1) ...
632s Setting up r-cran-yaml (2.3.10-1) ...
632s Setting up r-cran-lambda.r (1.2.4-2build1) ...
632s Setting up r-cran-evaluate (1.0.3-1) ...
632s Setting up r-cran-dbi (1.2.3-1) ...
632s Setting up r-cran-highr (0.11+dfsg-1) ...
632s Setting up r-cran-fansi (1.0.5-1) ...
632s Setting up r-cran-mass (7.3-64-1) ...
632s Setting up r-cran-snow (1:0.4.4-2) ...
632s Setting up r-cran-glue (1.8.0-1) ...
632s Setting up r-cran-bit (4.6.0+dfsg-1) ...
632s Setting up r-cran-xtable (1:1.8-4-2) ...
632s Setting up r-cran-cli (3.6.4-1) ...
632s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
632s Setting up r-cran-bitops (1.0-9-1) ...
632s Setting up r-bioc-biocversion (3.20.0-2) ...
632s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ...
632s Setting up r-cran-biocmanager (1.30.25+dfsg-1) ...
632s Setting up gcc (4:14.2.0-1ubuntu1) ...
632s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ...
632s Setting up r-cran-askpass (1.2.1-1) ...
632s Setting up r-cran-fastmap (1.2.0-1) ...
632s Setting up r-cran-png (0.1-8-1build2) ...
632s Setting up r-bioc-biobase (2.66.0-2) ...
632s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ...
632s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
632s Setting up r-cran-utf8 (1.2.4-1) ...
632s Setting up r-cran-colorspace (2.1-1+dfsg-1) ...
632s Setting up r-cran-stringi (1.8.4-1build1) ...
632s Setting up texlive-latex-base (2024.20250114-1) ...
632s Setting up r-cran-cpp11 (0.5.2-1) ...
632s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
632s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ...
632s Setting up r-cran-isoband (0.2.7-1) ...
632s Setting up r-cran-runit (0.4.33-1) ...
632s Setting up r-cran-futile.logger (1.4.3-4build1) ...
632s Setting up r-cran-gtable (0.3.6+dfsg-1) ...
632s Setting up r-cran-later (1.4.1+dfsg-1) ...
632s Setting up r-cran-matrix (1.7-3-1) ...
632s Setting up r-cran-htmltools (0.5.8.1-1) ...
632s Setting up r-cran-tinytex (0.56-1) ...
632s Setting up r-cran-knitr (1.49+dfsg-1) ...
632s Setting up r-cran-mgcv (1.9-1-1) ...
632s Setting up g++ (4:14.2.0-1ubuntu1) ...
632s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
632s Setting up r-cran-cachem (1.1.0-1) ...
632s Setting up r-cran-sass (0.4.9+dfsg-1) ...
632s Setting up build-essential (12.10ubuntu1) ...
632s Setting up r-bioc-iranges (2.40.1-2) ...
632s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ...
632s Setting up r-cran-restfulr (0.0.15-1) ...
632s Setting up r-cran-vctrs (0.6.5-1) ...
632s Setting up r-cran-pillar (1.10.1+dfsg-1) ...
632s Setting up r-cran-openssl (2.3.2+dfsg-1) ...
632s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ...
632s Setting up r-cran-stringr (1.5.1-1) ...
632s Setting up r-bioc-biocparallel (1.40.0-2) ...
632s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ...
632s Setting up r-cran-munsell (0.5.1-1) ...
632s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
632s Setting up r-cran-fontawesome (0.5.3-1) ...
632s Setting up r-cran-survival (3.8-3-1) ...
632s Setting up r-bioc-biocio (1.16.0+dfsg-2) ...
632s Setting up gfortran (4:14.2.0-1ubuntu1) ...
632s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
632s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
632s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
632s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
632s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
632s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ...
632s Setting up r-bioc-snpstats (1.56.0+dfsg-2) ...
632s Setting up texlive-bibtex-extra (2024.20250114-1) ...
632s Setting up r-cran-httr (1.4.7+dfsg-1) ...
632s Setting up r-cran-scales (1.3.0-1) ...
632s Setting up r-cran-memoise (2.0.1-1) ...
632s Setting up r-cran-promises (1.3.2+dfsg-1) ...
632s Setting up r-cran-purrr (1.0.4-1) ...
632s Setting up r-cran-blob (1.2.4-1) ...
632s Setting up r-bioc-xvector (0.46.0-2) ...
632s Setting up r-cran-dplyr (1.1.4-4) ...
632s Setting up r-cran-rsqlite (2.3.9-1) ...
632s Setting up r-base-dev (4.4.3-1) ...
632s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ...
632s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ...
632s Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ...
632s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
632s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ...
632s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
632s Setting up r-cran-tidyr (1.3.1-1) ...
632s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
632s Setting up r-cran-dbplyr (2.5.0+dfsg-1) ...
632s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ...
632s Setting up r-bioc-biocfilecache (2.14.0+dfsg-2) ...
632s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ...
632s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ...
632s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
632s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
632s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ...
632s Setting up r-cran-bookdown (0.42+dfsg-1) ...
632s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ...
632s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ...
632s Setting up r-bioc-annotationdbi (1.68.0-2) ...
632s Setting up r-bioc-annotationhub (3.14.0+dfsg-2) ...
632s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
632s Setting up r-bioc-genomicalignments (1.42.0-2) ...
632s Setting up r-bioc-rtracklayer (1.66.0-2) ...
632s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ...
632s Setting up r-bioc-bsgenome (1.74.0-2) ...
632s Setting up r-bioc-variantannotation (1.52.0-2) ...
632s Setting up libheif-plugin-aomdec:s390x (1.19.7-1) ...
632s Setting up libheif-plugin-libde265:s390x (1.19.7-1) ...
632s Setting up libheif1:s390x (1.19.7-1) ...
632s Setting up libmagickcore-7.q16-10:s390x (8:7.1.1.43+dfsg1-1) ...
632s Setting up libmagickwand-7.q16-10:s390x (8:7.1.1.43+dfsg1-1) ...
632s Setting up libmagick++-7.q16-5:s390x (8:7.1.1.43+dfsg1-1) ...
632s Setting up r-cran-magick (2.8.5+dfsg-1build1) ...
632s Processing triggers for man-db (2.13.0-1) ...
633s Processing triggers for install-info (7.1.1-1) ...
633s Processing triggers for libc-bin (2.41-1ubuntu2) ...
633s Processing triggers for tex-common (6.19) ...
633s Running updmap-sys. This may take some time... done.
633s Running mktexlsr /var/lib/texmf ... done.
633s Building format(s) --all.
672s 	This may take some time... done.
673s autopkgtest [13:11:48]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
673s autopkgtest [13:11:48]: test pkg-r-autopkgtest: [-----------------------
673s Test: Try to load the R library VariantAnnotation
673s 
673s R version 4.4.3 (2025-02-28) -- "Trophy Case"
673s Copyright (C) 2025 The R Foundation for Statistical Computing
673s Platform: s390x-ibm-linux-gnu
673s 
673s R is free software and comes with ABSOLUTELY NO WARRANTY.
673s You are welcome to redistribute it under certain conditions.
673s Type 'license()' or 'licence()' for distribution details.
673s 
673s R is a collaborative project with many contributors.
673s Type 'contributors()' for more information and
673s 'citation()' on how to cite R or R packages in publications.
673s 
673s Type 'demo()' for some demos, 'help()' for on-line help, or
673s 'help.start()' for an HTML browser interface to help.
673s Type 'q()' to quit R.
673s 
673s > library('VariantAnnotation')
673s Loading required package: BiocGenerics
673s 
673s Attaching package: ‘BiocGenerics’
673s 
673s The following objects are masked from ‘package:stats’:
673s 
673s     IQR, mad, sd, var, xtabs
673s 
673s The following objects are masked from ‘package:base’:
673s 
673s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
673s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
673s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
673s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
673s     Position, rank, rbind, Reduce, rownames, sapply, saveRDS, setdiff,
673s     table, tapply, union, unique, unsplit, which.max, which.min
673s 
673s Loading required package: MatrixGenerics
673s Loading required package: matrixStats
674s 
674s Attaching package: ‘MatrixGenerics’
674s 
674s The following objects are masked from ‘package:matrixStats’:
674s 
674s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
674s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
674s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
674s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
674s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
674s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
674s     colWeightedMeans, colWeightedMedians, colWeightedSds,
674s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
674s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
674s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
674s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
674s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
674s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
674s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
674s     rowWeightedSds, rowWeightedVars
674s 
674s Loading required package: GenomeInfoDb
674s Loading required package: S4Vectors
674s Loading required package: stats4
674s 
674s Attaching package: ‘S4Vectors’
674s 
674s The following object is masked from ‘package:utils’:
674s 
674s     findMatches
674s 
674s The following objects are masked from ‘package:base’:
674s 
674s     expand.grid, I, unname
674s 
674s Loading required package: IRanges
675s Loading required package: GenomicRanges
675s Loading required package: SummarizedExperiment
675s Loading required package: Biobase
675s Welcome to Bioconductor
675s 
675s     Vignettes contain introductory material; view with
675s     'browseVignettes()'. To cite Bioconductor, see
675s     'citation("Biobase")', and for packages 'citation("pkgname")'.
675s 
675s 
675s Attaching package: ‘Biobase’
675s 
675s The following object is masked from ‘package:MatrixGenerics’:
675s 
675s     rowMedians
675s 
675s The following objects are masked from ‘package:matrixStats’:
675s 
675s     anyMissing, rowMedians
675s 
678s Loading required package: Rsamtools
678s Loading required package: Biostrings
678s Loading required package: XVector
678s 
678s Attaching package: ‘Biostrings’
678s 
678s The following object is masked from ‘package:base’:
678s 
678s     strsplit
678s 
682s 
682s Attaching package: ‘VariantAnnotation’
682s 
682s > 
682s > 
682s The following object is masked from ‘package:base’:
682s 
682s     tabulate
682s 
682s Other tests are currently unsupported!
682s They will be progressively added.
682s autopkgtest [13:11:57]: test pkg-r-autopkgtest: -----------------------]
683s autopkgtest [13:11:58]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
683s pkg-r-autopkgtest    PASS
683s autopkgtest [13:11:58]: @@@@@@@@@@@@@@@@@@@@ summary
683s pkg-r-autopkgtest    PASS
689s nova [W] Using flock in prodstack6-s390x
689s flock: timeout while waiting to get lock
689s Creating nova instance adt-plucky-s390x-r-bioc-variantannotation-20250315-130035-juju-7f2275-prod-proposed-migration-environment-2-6c3c0d38-cf5c-4a15-bc8d-bf654ed37e2c from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
689s nova [W] Timed out waiting for 13ac41c0-5e73-4733-b470-24f2c2863b08 to get deleted.