0s autopkgtest [17:49:45]: starting date and time: 2025-03-15 17:49:45+0000 0s autopkgtest [17:49:45]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production' 0s autopkgtest [17:49:45]: host juju-7f2275-prod-proposed-migration-environment-20; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8p8bc2hc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-titancna --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-20@bos03-s390x-29.secgroup --name adt-plucky-s390x-r-bioc-titancna-20250315-174945-juju-7f2275-prod-proposed-migration-environment-20-47b34ce4-991b-481e-b689-65b9a2183b7c --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-20 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 103s autopkgtest [17:51:28]: testbed dpkg architecture: s390x 103s autopkgtest [17:51:28]: testbed apt version: 2.9.33 104s autopkgtest [17:51:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 104s autopkgtest [17:51:29]: testbed release detected to be: None 105s autopkgtest [17:51:30]: updating testbed package index (apt update) 105s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB] 105s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease 105s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease 105s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease 105s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB] 106s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB] 106s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB] 106s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB] 106s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B] 106s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B] 106s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB] 106s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB] 106s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B] 106s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B] 107s Fetched 1073 kB in 2s (662 kB/s) 107s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade... 108s Calculating upgrade... 108s The following packages were automatically installed and are no longer required: 108s libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64 108s linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic 108s linux-modules-6.11.0-8-generic linux-tools-6.11.0-8 108s linux-tools-6.11.0-8-generic 108s Use 'sudo apt autoremove' to remove them. 108s The following packages will be upgraded: 108s pinentry-curses python3-jinja2 strace 108s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s Need to get 652 kB of archives. 108s After this operation, 27.6 kB of additional disk space will be used. 108s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB] 109s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB] 109s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB] 109s Fetched 652 kB in 1s (652 kB/s) 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 110s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ... 110s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ... 110s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ... 110s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ... 110s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ... 110s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ... 110s Setting up pinentry-curses (1.3.1-2ubuntu3) ... 110s Setting up python3-jinja2 (3.1.5-2ubuntu1) ... 110s Setting up strace (6.13+ds-1ubuntu1) ... 110s Processing triggers for man-db (2.13.0-1) ... 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s Solving dependencies... 111s The following packages will be REMOVED: 111s libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64* 111s linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic* 111s linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8* 111s linux-tools-6.11.0-8-generic* 111s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded. 111s After this operation, 167 MB disk space will be freed. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 81428 files and directories currently installed.) 111s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ... 111s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ... 111s Removing libpython3.12t64:s390x (3.12.9-1) ... 111s Removing libpython3.12-stdlib:s390x (3.12.9-1) ... 111s Removing libnsl2:s390x (1.3.0-3build3) ... 111s Removing libpython3.12-minimal:s390x (3.12.9-1) ... 111s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ... 111s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ... 112s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 112s Processing triggers for libc-bin (2.41-1ubuntu1) ... 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56328 files and directories currently installed.) 112s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ... 112s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ... 113s autopkgtest [17:51:38]: upgrading testbed (apt dist-upgrade and autopurge) 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade...Starting pkgProblemResolver with broken count: 0 113s Starting 2 pkgProblemResolver with broken count: 0 113s Done 113s Entering ResolveByKeep 113s 113s Calculating upgrade... 114s The following packages will be upgraded: 114s libc-bin libc-dev-bin libc6 libc6-dev locales 114s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Need to get 9512 kB of archives. 114s After this operation, 8192 B of additional disk space will be used. 114s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB] 115s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB] 115s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB] 118s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB] 118s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB] 122s Preconfiguring packages ... 122s Fetched 9512 kB in 8s (1169 kB/s) 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 122s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ... 122s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 122s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ... 122s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 122s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ... 122s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 122s Setting up libc6:s390x (2.41-1ubuntu2) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 122s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ... 122s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 122s Setting up libc-bin (2.41-1ubuntu2) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 122s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ... 122s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ... 123s Setting up locales (2.41-1ubuntu2) ... 123s Generating locales (this might take a while)... 124s en_US.UTF-8... done 124s Generation complete. 124s Setting up libc-dev-bin (2.41-1ubuntu2) ... 124s Setting up libc6-dev:s390x (2.41-1ubuntu2) ... 125s Processing triggers for man-db (2.13.0-1) ... 125s Processing triggers for systemd (257.3-1ubuntu3) ... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s Starting pkgProblemResolver with broken count: 0 126s Starting 2 pkgProblemResolver with broken count: 0 126s Done 126s Solving dependencies... 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s autopkgtest [17:51:51]: rebooting testbed after setup commands that affected boot 145s autopkgtest [17:52:10]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025 147s autopkgtest [17:52:12]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-titancna 152s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-titancna 1.44.0-2 (dsc) [2253 B] 152s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-titancna 1.44.0-2 (tar) [4013 kB] 152s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-titancna 1.44.0-2 (diff) [2928 B] 153s gpgv: Signature made Tue Jan 14 08:11:16 2025 UTC 153s gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 153s gpgv: issuer "crusoe@debian.org" 153s gpgv: Can't check signature: No public key 153s dpkg-source: warning: cannot verify inline signature for ./r-bioc-titancna_1.44.0-2.dsc: no acceptable signature found 153s autopkgtest [17:52:18]: testing package r-bioc-titancna version 1.44.0-2 153s autopkgtest [17:52:18]: build not needed 156s autopkgtest [17:52:21]: test pkg-r-autopkgtest: preparing testbed 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Starting pkgProblemResolver with broken count: 0 157s Starting 2 pkgProblemResolver with broken count: 0 157s Done 157s The following NEW packages will be installed: 157s build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu 157s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 157s g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14 157s gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14 157s gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools libasan8 157s libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2 157s libcc1-0 libdatrie1 libdeflate-dev libdeflate0 libfontconfig1 libfreetype6 157s libgcc-14-dev libgfortran-14-dev libgfortran5 libgomp1 libgraphite2-3 157s libharfbuzz0b libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 157s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 157s liblapack3 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 157s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0 157s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 157s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-14-dev libtcl8.6 157s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 157s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 157s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 157s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio 157s r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 157s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 157s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 157s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 157s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 157s r-bioc-summarizedexperiment r-bioc-titancna r-bioc-ucsc.utils 157s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 157s r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 157s r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon 157s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dplyr r-cran-fansi 157s r-cran-fastmap r-cran-foreach r-cran-formatr r-cran-futile.logger 157s r-cran-futile.options r-cran-generics r-cran-glue r-cran-httr 157s r-cran-iterators r-cran-jsonlite r-cran-lambda.r r-cran-lattice 157s r-cran-lifecycle r-cran-magrittr r-cran-matrix r-cran-matrixstats 157s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 157s r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl r-cran-restfulr r-cran-rjson 157s r-cran-rlang r-cran-rsqlite r-cran-snow r-cran-sys r-cran-tibble 157s r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml 157s r-cran-yaml unzip x11-common xdg-utils zip zlib1g-dev 157s 0 upgraded, 180 newly installed, 0 to remove and 0 not upgraded. 157s Need to get 241 MB of archives. 157s After this operation, 691 MB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB] 158s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB] 158s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB] 165s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B] 165s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B] 165s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB] 165s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB] 165s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB] 165s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB] 165s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB] 168s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB] 169s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB] 170s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB] 187s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB] 188s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B] 188s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B] 188s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB] 190s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB] 202s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB] 202s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B] 202s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B] 202s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B] 202s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB] 202s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB] 203s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB] 203s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB] 204s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB] 204s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB] 204s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB] 205s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB] 205s Get:31 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB] 206s Get:32 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB] 216s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB] 216s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B] 216s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B] 216s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB] 217s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB] 217s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB] 217s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x libboost1.83-dev s390x 1.83.0-4.1ubuntu2 [10.7 MB] 230s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x libboost-dev s390x 1.83.0.2ubuntu1 [4470 B] 230s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB] 230s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB] 230s Get:43 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB] 230s Get:44 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B] 230s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB] 230s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB] 230s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB] 230s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB] 230s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB] 230s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB] 231s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB] 231s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB] 231s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB] 231s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB] 244s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB] 244s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB] 245s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B] 245s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B] 245s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B] 245s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB] 248s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB] 254s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB] 255s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB] 255s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB] 255s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB] 255s Get:66 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB] 255s Get:67 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB] 255s Get:68 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB] 255s Get:69 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB] 255s Get:70 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB] 256s Get:71 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB] 256s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B] 256s Get:73 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB] 257s Get:74 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB] 257s Get:75 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB] 258s Get:76 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB] 259s Get:77 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB] 259s Get:78 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB] 259s Get:79 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB] 259s Get:80 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB] 260s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB] 260s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB] 261s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB] 261s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB] 261s Get:85 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B] 261s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB] 262s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB] 262s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB] 262s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB] 263s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB] 263s Get:91 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB] 295s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB] 296s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB] 296s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB] 296s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB] 296s Get:96 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B] 296s Get:97 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 296s Get:98 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB] 297s Get:99 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biobase s390x 2.66.0-2 [2339 kB] 300s Get:100 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4vectors s390x 0.44.0+dfsg-2 [2063 kB] 302s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-iranges s390x 2.40.1-2 [2301 kB] 304s Get:102 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dbi all 1.2.3-1 [853 kB] 305s Get:103 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit s390x 4.6.0+dfsg-1 [471 kB] 306s Get:104 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bit64 s390x 4.6.0-1-1ubuntu2 [503 kB] 306s Get:105 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB] 308s Get:106 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB] 309s Get:107 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB] 310s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 310s Get:109 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB] 311s Get:110 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-blob all 1.2.4-1 [49.8 kB] 311s Get:111 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB] 311s Get:112 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB] 311s Get:113 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB] 311s Get:114 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 311s Get:115 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-plogr all 0.2.0-3build1 [15.1 kB] 311s Get:116 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cpp11 all 0.5.2-1 [233 kB] 311s Get:117 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rsqlite s390x 2.3.9-1 [1331 kB] 313s Get:118 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-curl s390x 6.2.1+dfsg-1ubuntu1 [196 kB] 313s Get:119 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB] 313s Get:120 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB] 313s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sys s390x 3.4.3-1 [45.2 kB] 313s Get:122 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-askpass s390x 1.2.1-1 [24.8 kB] 313s Get:123 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-openssl s390x 2.3.2+dfsg-1 [406 kB] 314s Get:124 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB] 314s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httr all 1.4.7+dfsg-1 [459 kB] 314s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-png s390x 0.1-8-1build2 [41.5 kB] 314s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-zlibbioc all 1.52.0+dfsg-2 [10.2 kB] 314s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-xvector s390x 0.46.0-2 [624 kB] 315s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-ucsc.utils all 1.2.0+ds-2 [77.2 kB] 315s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodbdata all 1.2.13-2 [12.9 MB] 326s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomeinfodb all 1.42.3+dfsg-1 [3887 kB] 330s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB] 330s Get:133 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biostrings s390x 2.74.1+dfsg-2 [13.3 MB] 342s Get:134 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-keggrest all 1.46.0+dfsg-2 [183 kB] 342s Get:135 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-annotationdbi all 1.68.0-2 [4857 kB] 346s Get:136 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocio all 1.16.0+dfsg-2 [209 kB] 346s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-formatr all 1.14-2 [152 kB] 346s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lambda.r all 1.2.4-2build1 [119 kB] 347s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 347s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 347s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-snow all 1:0.4.4-2 [97.6 kB] 347s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-codetools all 0.2-20-1 [90.5 kB] 347s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bh all 1.84.0-1 [5962 B] 347s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocparallel s390x 1.40.0-2 [1347 kB] 348s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicranges s390x 1.58.0+dfsg-2 [2087 kB] 350s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xml s390x 3.99-0.18-1 [1744 kB] 352s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bitops s390x 1.0-9-1 [30.1 kB] 352s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rhtslib s390x 3.2.0+dfsg-2 [1458 kB] 353s Get:149 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rsamtools s390x 2.22.0+dfsg-2 [3729 kB] 357s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB] 357s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB] 358s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB] 359s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB] 363s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-abind all 1.4-8-1 [66.9 kB] 363s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-s4arrays s390x 1.6.0+dfsg-2 [700 kB] 364s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsearray s390x 1.6.2+dfsg-1 [1386 kB] 365s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-delayedarray s390x 0.32.0+dfsg-2 [2068 kB] 367s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-summarizedexperiment all 1.36.0+dfsg-2 [1109 kB] 369s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicalignments s390x 1.42.0-2 [2152 kB] 371s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcurl s390x 1.98-1.16+dfsg-1 [808 kB] 371s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rjson s390x 0.2.23-1 [104 kB] 372s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB] 372s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-restfulr s390x 0.0.15-1 [380 kB] 372s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-rtracklayer s390x 1.66.0-2 [5235 kB] 377s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-bsgenome all 1.74.0-2 [7001 kB] 383s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-genomicfeatures all 1.58.0+dfsg-2 [937 kB] 383s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-variantannotation s390x 1.52.0-2 [3683 kB] 386s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-iterators all 1.0.14-1 [336 kB] 387s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-foreach all 1.5.2-1 [124 kB] 387s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-data.table s390x 1.17.0+dfsg-1 [2167 kB] 388s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-generics all 0.1.3-1 [81.3 kB] 388s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB] 388s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB] 388s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB] 388s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB] 389s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB] 389s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB] 389s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tidyselect s390x 1.2.1+dfsg-1 [222 kB] 389s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-dplyr s390x 1.1.4-4 [1537 kB] 391s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-titancna s390x 1.44.0-2 [4111 kB] 395s Preconfiguring packages ... 395s Fetched 241 MB in 3min 57s (1016 kB/s) 395s Selecting previously unselected package libisl23:s390x. 395s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 56326 files and directories currently installed.) 395s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ... 395s Unpacking libisl23:s390x (0.27-1) ... 395s Selecting previously unselected package libmpc3:s390x. 395s Preparing to unpack .../001-libmpc3_1.3.1-1build2_s390x.deb ... 395s Unpacking libmpc3:s390x (1.3.1-1build2) ... 395s Selecting previously unselected package cpp-14-s390x-linux-gnu. 395s Preparing to unpack .../002-cpp-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 395s Unpacking cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 395s Selecting previously unselected package cpp-14. 395s Preparing to unpack .../003-cpp-14_14.2.0-17ubuntu3_s390x.deb ... 395s Unpacking cpp-14 (14.2.0-17ubuntu3) ... 395s Selecting previously unselected package cpp-s390x-linux-gnu. 395s Preparing to unpack .../004-cpp-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 395s Unpacking cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 395s Selecting previously unselected package cpp. 395s Preparing to unpack .../005-cpp_4%3a14.2.0-1ubuntu1_s390x.deb ... 395s Unpacking cpp (4:14.2.0-1ubuntu1) ... 395s Selecting previously unselected package libcc1-0:s390x. 395s Preparing to unpack .../006-libcc1-0_15-20250222-0ubuntu1_s390x.deb ... 395s Unpacking libcc1-0:s390x (15-20250222-0ubuntu1) ... 395s Selecting previously unselected package libgomp1:s390x. 395s Preparing to unpack .../007-libgomp1_15-20250222-0ubuntu1_s390x.deb ... 395s Unpacking libgomp1:s390x (15-20250222-0ubuntu1) ... 395s Selecting previously unselected package libitm1:s390x. 395s Preparing to unpack .../008-libitm1_15-20250222-0ubuntu1_s390x.deb ... 395s Unpacking libitm1:s390x (15-20250222-0ubuntu1) ... 395s Selecting previously unselected package libasan8:s390x. 395s Preparing to unpack .../009-libasan8_15-20250222-0ubuntu1_s390x.deb ... 395s Unpacking libasan8:s390x (15-20250222-0ubuntu1) ... 395s Selecting previously unselected package libubsan1:s390x. 395s Preparing to unpack .../010-libubsan1_15-20250222-0ubuntu1_s390x.deb ... 395s Unpacking libubsan1:s390x (15-20250222-0ubuntu1) ... 395s Selecting previously unselected package libgcc-14-dev:s390x. 395s Preparing to unpack .../011-libgcc-14-dev_14.2.0-17ubuntu3_s390x.deb ... 395s Unpacking libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 395s Selecting previously unselected package gcc-14-s390x-linux-gnu. 395s Preparing to unpack .../012-gcc-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 395s Unpacking gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 395s Selecting previously unselected package gcc-14. 395s Preparing to unpack .../013-gcc-14_14.2.0-17ubuntu3_s390x.deb ... 395s Unpacking gcc-14 (14.2.0-17ubuntu3) ... 395s Selecting previously unselected package gcc-s390x-linux-gnu. 395s Preparing to unpack .../014-gcc-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 395s Unpacking gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 395s Selecting previously unselected package gcc. 395s Preparing to unpack .../015-gcc_4%3a14.2.0-1ubuntu1_s390x.deb ... 395s Unpacking gcc (4:14.2.0-1ubuntu1) ... 395s Selecting previously unselected package libstdc++-14-dev:s390x. 395s Preparing to unpack .../016-libstdc++-14-dev_14.2.0-17ubuntu3_s390x.deb ... 395s Unpacking libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 396s Selecting previously unselected package g++-14-s390x-linux-gnu. 396s Preparing to unpack .../017-g++-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 396s Unpacking g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 396s Selecting previously unselected package g++-14. 396s Preparing to unpack .../018-g++-14_14.2.0-17ubuntu3_s390x.deb ... 396s Unpacking g++-14 (14.2.0-17ubuntu3) ... 396s Selecting previously unselected package g++-s390x-linux-gnu. 396s Preparing to unpack .../019-g++-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 396s Unpacking g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 396s Selecting previously unselected package g++. 396s Preparing to unpack .../020-g++_4%3a14.2.0-1ubuntu1_s390x.deb ... 396s Unpacking g++ (4:14.2.0-1ubuntu1) ... 396s Selecting previously unselected package build-essential. 396s Preparing to unpack .../021-build-essential_12.10ubuntu1_s390x.deb ... 396s Unpacking build-essential (12.10ubuntu1) ... 396s Selecting previously unselected package dctrl-tools. 396s Preparing to unpack .../022-dctrl-tools_2.24-3build3_s390x.deb ... 396s Unpacking dctrl-tools (2.24-3build3) ... 396s Selecting previously unselected package libfreetype6:s390x. 396s Preparing to unpack .../023-libfreetype6_2.13.3+dfsg-1_s390x.deb ... 396s Unpacking libfreetype6:s390x (2.13.3+dfsg-1) ... 396s Selecting previously unselected package fonts-dejavu-mono. 396s Preparing to unpack .../024-fonts-dejavu-mono_2.37-8_all.deb ... 396s Unpacking fonts-dejavu-mono (2.37-8) ... 396s Selecting previously unselected package fonts-dejavu-core. 396s Preparing to unpack .../025-fonts-dejavu-core_2.37-8_all.deb ... 396s Unpacking fonts-dejavu-core (2.37-8) ... 396s Selecting previously unselected package fontconfig-config. 396s Preparing to unpack .../026-fontconfig-config_2.15.0-2ubuntu1_s390x.deb ... 396s Unpacking fontconfig-config (2.15.0-2ubuntu1) ... 396s Selecting previously unselected package libfontconfig1:s390x. 396s Preparing to unpack .../027-libfontconfig1_2.15.0-2ubuntu1_s390x.deb ... 396s Unpacking libfontconfig1:s390x (2.15.0-2ubuntu1) ... 396s Selecting previously unselected package fontconfig. 396s Preparing to unpack .../028-fontconfig_2.15.0-2ubuntu1_s390x.deb ... 396s Unpacking fontconfig (2.15.0-2ubuntu1) ... 396s Selecting previously unselected package libgfortran5:s390x. 396s Preparing to unpack .../029-libgfortran5_15-20250222-0ubuntu1_s390x.deb ... 396s Unpacking libgfortran5:s390x (15-20250222-0ubuntu1) ... 396s Selecting previously unselected package libgfortran-14-dev:s390x. 396s Preparing to unpack .../030-libgfortran-14-dev_14.2.0-17ubuntu3_s390x.deb ... 396s Unpacking libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 396s Selecting previously unselected package gfortran-14-s390x-linux-gnu. 396s Preparing to unpack .../031-gfortran-14-s390x-linux-gnu_14.2.0-17ubuntu3_s390x.deb ... 396s Unpacking gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 396s Selecting previously unselected package gfortran-14. 396s Preparing to unpack .../032-gfortran-14_14.2.0-17ubuntu3_s390x.deb ... 396s Unpacking gfortran-14 (14.2.0-17ubuntu3) ... 396s Selecting previously unselected package gfortran-s390x-linux-gnu. 396s Preparing to unpack .../033-gfortran-s390x-linux-gnu_4%3a14.2.0-1ubuntu1_s390x.deb ... 396s Unpacking gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 396s Selecting previously unselected package gfortran. 396s Preparing to unpack .../034-gfortran_4%3a14.2.0-1ubuntu1_s390x.deb ... 396s Unpacking gfortran (4:14.2.0-1ubuntu1) ... 396s Selecting previously unselected package icu-devtools. 396s Preparing to unpack .../035-icu-devtools_76.1-1ubuntu2_s390x.deb ... 396s Unpacking icu-devtools (76.1-1ubuntu2) ... 396s Selecting previously unselected package libblas3:s390x. 396s Preparing to unpack .../036-libblas3_3.12.1-2_s390x.deb ... 396s Unpacking libblas3:s390x (3.12.1-2) ... 396s Selecting previously unselected package libblas-dev:s390x. 396s Preparing to unpack .../037-libblas-dev_3.12.1-2_s390x.deb ... 396s Unpacking libblas-dev:s390x (3.12.1-2) ... 396s Selecting previously unselected package libboost1.83-dev:s390x. 396s Preparing to unpack .../038-libboost1.83-dev_1.83.0-4.1ubuntu2_s390x.deb ... 396s Unpacking libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 397s Selecting previously unselected package libboost-dev:s390x. 397s Preparing to unpack .../039-libboost-dev_1.83.0.2ubuntu1_s390x.deb ... 397s Unpacking libboost-dev:s390x (1.83.0.2ubuntu1) ... 397s Selecting previously unselected package libbz2-dev:s390x. 397s Preparing to unpack .../040-libbz2-dev_1.0.8-6_s390x.deb ... 397s Unpacking libbz2-dev:s390x (1.0.8-6) ... 397s Selecting previously unselected package libpixman-1-0:s390x. 397s Preparing to unpack .../041-libpixman-1-0_0.44.0-3_s390x.deb ... 397s Unpacking libpixman-1-0:s390x (0.44.0-3) ... 397s Selecting previously unselected package libxcb-render0:s390x. 397s Preparing to unpack .../042-libxcb-render0_1.17.0-2_s390x.deb ... 397s Unpacking libxcb-render0:s390x (1.17.0-2) ... 397s Selecting previously unselected package libxcb-shm0:s390x. 397s Preparing to unpack .../043-libxcb-shm0_1.17.0-2_s390x.deb ... 397s Unpacking libxcb-shm0:s390x (1.17.0-2) ... 397s Selecting previously unselected package libxrender1:s390x. 397s Preparing to unpack .../044-libxrender1_1%3a0.9.10-1.1build1_s390x.deb ... 397s Unpacking libxrender1:s390x (1:0.9.10-1.1build1) ... 397s Selecting previously unselected package libcairo2:s390x. 397s Preparing to unpack .../045-libcairo2_1.18.2-2_s390x.deb ... 397s Unpacking libcairo2:s390x (1.18.2-2) ... 397s Selecting previously unselected package libdatrie1:s390x. 397s Preparing to unpack .../046-libdatrie1_0.2.13-3build1_s390x.deb ... 397s Unpacking libdatrie1:s390x (0.2.13-3build1) ... 397s Selecting previously unselected package libdeflate0:s390x. 397s Preparing to unpack .../047-libdeflate0_1.23-1_s390x.deb ... 397s Unpacking libdeflate0:s390x (1.23-1) ... 397s Selecting previously unselected package libdeflate-dev:s390x. 397s Preparing to unpack .../048-libdeflate-dev_1.23-1_s390x.deb ... 397s Unpacking libdeflate-dev:s390x (1.23-1) ... 397s Selecting previously unselected package libgraphite2-3:s390x. 397s Preparing to unpack .../049-libgraphite2-3_1.3.14-2ubuntu1_s390x.deb ... 397s Unpacking libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 397s Selecting previously unselected package libharfbuzz0b:s390x. 397s Preparing to unpack .../050-libharfbuzz0b_10.2.0-1_s390x.deb ... 397s Unpacking libharfbuzz0b:s390x (10.2.0-1) ... 397s Selecting previously unselected package x11-common. 397s Preparing to unpack .../051-x11-common_1%3a7.7+23ubuntu3_all.deb ... 397s Unpacking x11-common (1:7.7+23ubuntu3) ... 397s Selecting previously unselected package libice6:s390x. 397s Preparing to unpack .../052-libice6_2%3a1.1.1-1_s390x.deb ... 397s Unpacking libice6:s390x (2:1.1.1-1) ... 397s Selecting previously unselected package libicu-dev:s390x. 397s Preparing to unpack .../053-libicu-dev_76.1-1ubuntu2_s390x.deb ... 397s Unpacking libicu-dev:s390x (76.1-1ubuntu2) ... 398s Selecting previously unselected package libjpeg-turbo8:s390x. 398s Preparing to unpack .../054-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ... 398s Unpacking libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 398s Selecting previously unselected package libjpeg-turbo8-dev:s390x. 398s Preparing to unpack .../055-libjpeg-turbo8-dev_2.1.5-3ubuntu2_s390x.deb ... 398s Unpacking libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 398s Selecting previously unselected package libjpeg8:s390x. 398s Preparing to unpack .../056-libjpeg8_8c-2ubuntu11_s390x.deb ... 398s Unpacking libjpeg8:s390x (8c-2ubuntu11) ... 398s Selecting previously unselected package libjpeg8-dev:s390x. 398s Preparing to unpack .../057-libjpeg8-dev_8c-2ubuntu11_s390x.deb ... 398s Unpacking libjpeg8-dev:s390x (8c-2ubuntu11) ... 398s Selecting previously unselected package libjpeg-dev:s390x. 398s Preparing to unpack .../058-libjpeg-dev_8c-2ubuntu11_s390x.deb ... 398s Unpacking libjpeg-dev:s390x (8c-2ubuntu11) ... 398s Selecting previously unselected package liblapack3:s390x. 398s Preparing to unpack .../059-liblapack3_3.12.1-2_s390x.deb ... 398s Unpacking liblapack3:s390x (3.12.1-2) ... 398s Selecting previously unselected package liblapack-dev:s390x. 398s Preparing to unpack .../060-liblapack-dev_3.12.1-2_s390x.deb ... 398s Unpacking liblapack-dev:s390x (3.12.1-2) ... 398s Selecting previously unselected package libncurses-dev:s390x. 398s Preparing to unpack .../061-libncurses-dev_6.5+20250216-2_s390x.deb ... 398s Unpacking libncurses-dev:s390x (6.5+20250216-2) ... 398s Selecting previously unselected package libthai-data. 398s Preparing to unpack .../062-libthai-data_0.1.29-2build1_all.deb ... 398s Unpacking libthai-data (0.1.29-2build1) ... 398s Selecting previously unselected package libthai0:s390x. 398s Preparing to unpack .../063-libthai0_0.1.29-2build1_s390x.deb ... 398s Unpacking libthai0:s390x (0.1.29-2build1) ... 398s Selecting previously unselected package libpango-1.0-0:s390x. 398s Preparing to unpack .../064-libpango-1.0-0_1.56.2-1_s390x.deb ... 398s Unpacking libpango-1.0-0:s390x (1.56.2-1) ... 398s Selecting previously unselected package libpangoft2-1.0-0:s390x. 398s Preparing to unpack .../065-libpangoft2-1.0-0_1.56.2-1_s390x.deb ... 398s Unpacking libpangoft2-1.0-0:s390x (1.56.2-1) ... 398s Selecting previously unselected package libpangocairo-1.0-0:s390x. 398s Preparing to unpack .../066-libpangocairo-1.0-0_1.56.2-1_s390x.deb ... 398s Unpacking libpangocairo-1.0-0:s390x (1.56.2-1) ... 398s Selecting previously unselected package libpaper2:s390x. 398s Preparing to unpack .../067-libpaper2_2.2.5-0.3_s390x.deb ... 398s Unpacking libpaper2:s390x (2.2.5-0.3) ... 398s Selecting previously unselected package libpaper-utils. 398s Preparing to unpack .../068-libpaper-utils_2.2.5-0.3_s390x.deb ... 398s Unpacking libpaper-utils (2.2.5-0.3) ... 398s Selecting previously unselected package libpcre2-16-0:s390x. 398s Preparing to unpack .../069-libpcre2-16-0_10.45-1_s390x.deb ... 398s Unpacking libpcre2-16-0:s390x (10.45-1) ... 398s Selecting previously unselected package libpcre2-32-0:s390x. 398s Preparing to unpack .../070-libpcre2-32-0_10.45-1_s390x.deb ... 398s Unpacking libpcre2-32-0:s390x (10.45-1) ... 398s Selecting previously unselected package libpcre2-posix3:s390x. 398s Preparing to unpack .../071-libpcre2-posix3_10.45-1_s390x.deb ... 398s Unpacking libpcre2-posix3:s390x (10.45-1) ... 398s Selecting previously unselected package libpcre2-dev:s390x. 398s Preparing to unpack .../072-libpcre2-dev_10.45-1_s390x.deb ... 398s Unpacking libpcre2-dev:s390x (10.45-1) ... 398s Selecting previously unselected package libpkgconf3:s390x. 398s Preparing to unpack .../073-libpkgconf3_1.8.1-4_s390x.deb ... 398s Unpacking libpkgconf3:s390x (1.8.1-4) ... 398s Selecting previously unselected package zlib1g-dev:s390x. 398s Preparing to unpack .../074-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1ubuntu1_s390x.deb ... 398s Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 398s Selecting previously unselected package libpng-dev:s390x. 398s Preparing to unpack .../075-libpng-dev_1.6.47-1_s390x.deb ... 398s Unpacking libpng-dev:s390x (1.6.47-1) ... 398s Selecting previously unselected package libreadline-dev:s390x. 398s Preparing to unpack .../076-libreadline-dev_8.2-6_s390x.deb ... 398s Unpacking libreadline-dev:s390x (8.2-6) ... 398s Selecting previously unselected package libsharpyuv0:s390x. 398s Preparing to unpack .../077-libsharpyuv0_1.5.0-0.1_s390x.deb ... 398s Unpacking libsharpyuv0:s390x (1.5.0-0.1) ... 398s Selecting previously unselected package libsm6:s390x. 398s Preparing to unpack .../078-libsm6_2%3a1.2.4-1_s390x.deb ... 398s Unpacking libsm6:s390x (2:1.2.4-1) ... 398s Selecting previously unselected package libtcl8.6:s390x. 398s Preparing to unpack .../079-libtcl8.6_8.6.16+dfsg-1_s390x.deb ... 398s Unpacking libtcl8.6:s390x (8.6.16+dfsg-1) ... 398s Selecting previously unselected package libjbig0:s390x. 398s Preparing to unpack .../080-libjbig0_2.1-6.1ubuntu2_s390x.deb ... 398s Unpacking libjbig0:s390x (2.1-6.1ubuntu2) ... 398s Selecting previously unselected package libwebp7:s390x. 398s Preparing to unpack .../081-libwebp7_1.5.0-0.1_s390x.deb ... 398s Unpacking libwebp7:s390x (1.5.0-0.1) ... 398s Selecting previously unselected package libtiff6:s390x. 398s Preparing to unpack .../082-libtiff6_4.5.1+git230720-4ubuntu4_s390x.deb ... 398s Unpacking libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 398s Selecting previously unselected package libxft2:s390x. 398s Preparing to unpack .../083-libxft2_2.3.6-1build1_s390x.deb ... 398s Unpacking libxft2:s390x (2.3.6-1build1) ... 398s Selecting previously unselected package libxss1:s390x. 398s Preparing to unpack .../084-libxss1_1%3a1.2.3-1build3_s390x.deb ... 398s Unpacking libxss1:s390x (1:1.2.3-1build3) ... 398s Selecting previously unselected package libtk8.6:s390x. 398s Preparing to unpack .../085-libtk8.6_8.6.16-1_s390x.deb ... 398s Unpacking libtk8.6:s390x (8.6.16-1) ... 398s Selecting previously unselected package libxt6t64:s390x. 398s Preparing to unpack .../086-libxt6t64_1%3a1.2.1-1.2build1_s390x.deb ... 398s Unpacking libxt6t64:s390x (1:1.2.1-1.2build1) ... 398s Selecting previously unselected package zip. 398s Preparing to unpack .../087-zip_3.0-14ubuntu2_s390x.deb ... 398s Unpacking zip (3.0-14ubuntu2) ... 398s Selecting previously unselected package unzip. 398s Preparing to unpack .../088-unzip_6.0-28ubuntu6_s390x.deb ... 398s Unpacking unzip (6.0-28ubuntu6) ... 398s Selecting previously unselected package xdg-utils. 398s Preparing to unpack .../089-xdg-utils_1.2.1-2ubuntu1_all.deb ... 398s Unpacking xdg-utils (1.2.1-2ubuntu1) ... 398s Selecting previously unselected package r-base-core. 398s Preparing to unpack .../090-r-base-core_4.4.3-1_s390x.deb ... 398s Unpacking r-base-core (4.4.3-1) ... 399s Selecting previously unselected package liblzma-dev:s390x. 399s Preparing to unpack .../091-liblzma-dev_5.6.4-1_s390x.deb ... 399s Unpacking liblzma-dev:s390x (5.6.4-1) ... 399s Selecting previously unselected package pkgconf-bin. 399s Preparing to unpack .../092-pkgconf-bin_1.8.1-4_s390x.deb ... 399s Unpacking pkgconf-bin (1.8.1-4) ... 399s Selecting previously unselected package pkgconf:s390x. 399s Preparing to unpack .../093-pkgconf_1.8.1-4_s390x.deb ... 399s Unpacking pkgconf:s390x (1.8.1-4) ... 399s Selecting previously unselected package libtirpc-dev:s390x. 399s Preparing to unpack .../094-libtirpc-dev_1.3.4+ds-1.3_s390x.deb ... 399s Unpacking libtirpc-dev:s390x (1.3.4+ds-1.3) ... 399s Selecting previously unselected package r-base-dev. 399s Preparing to unpack .../095-r-base-dev_4.4.3-1_all.deb ... 399s Unpacking r-base-dev (4.4.3-1) ... 399s Selecting previously unselected package pkg-r-autopkgtest. 399s Preparing to unpack .../096-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 399s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 399s Selecting previously unselected package r-bioc-biocgenerics. 399s Preparing to unpack .../097-r-bioc-biocgenerics_0.52.0-2_all.deb ... 399s Unpacking r-bioc-biocgenerics (0.52.0-2) ... 399s Selecting previously unselected package r-bioc-biobase. 399s Preparing to unpack .../098-r-bioc-biobase_2.66.0-2_s390x.deb ... 399s Unpacking r-bioc-biobase (2.66.0-2) ... 399s Selecting previously unselected package r-bioc-s4vectors. 399s Preparing to unpack .../099-r-bioc-s4vectors_0.44.0+dfsg-2_s390x.deb ... 399s Unpacking r-bioc-s4vectors (0.44.0+dfsg-2) ... 399s Selecting previously unselected package r-bioc-iranges. 399s Preparing to unpack .../100-r-bioc-iranges_2.40.1-2_s390x.deb ... 399s Unpacking r-bioc-iranges (2.40.1-2) ... 399s Selecting previously unselected package r-cran-dbi. 399s Preparing to unpack .../101-r-cran-dbi_1.2.3-1_all.deb ... 399s Unpacking r-cran-dbi (1.2.3-1) ... 399s Selecting previously unselected package r-cran-bit. 399s Preparing to unpack .../102-r-cran-bit_4.6.0+dfsg-1_s390x.deb ... 399s Unpacking r-cran-bit (4.6.0+dfsg-1) ... 399s Selecting previously unselected package r-cran-bit64. 399s Preparing to unpack .../103-r-cran-bit64_4.6.0-1-1ubuntu2_s390x.deb ... 399s Unpacking r-cran-bit64 (4.6.0-1-1ubuntu2) ... 399s Selecting previously unselected package r-cran-rlang. 399s Preparing to unpack .../104-r-cran-rlang_1.1.5-1_s390x.deb ... 399s Unpacking r-cran-rlang (1.1.5-1) ... 399s Selecting previously unselected package r-cran-cli. 399s Preparing to unpack .../105-r-cran-cli_3.6.4-1_s390x.deb ... 399s Unpacking r-cran-cli (3.6.4-1) ... 399s Selecting previously unselected package r-cran-glue. 399s Preparing to unpack .../106-r-cran-glue_1.8.0-1_s390x.deb ... 399s Unpacking r-cran-glue (1.8.0-1) ... 399s Selecting previously unselected package r-cran-lifecycle. 399s Preparing to unpack .../107-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 399s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 399s Selecting previously unselected package r-cran-vctrs. 399s Preparing to unpack .../108-r-cran-vctrs_0.6.5-1_s390x.deb ... 399s Unpacking r-cran-vctrs (0.6.5-1) ... 399s Selecting previously unselected package r-cran-blob. 399s Preparing to unpack .../109-r-cran-blob_1.2.4-1_all.deb ... 399s Unpacking r-cran-blob (1.2.4-1) ... 399s Selecting previously unselected package r-cran-fastmap. 399s Preparing to unpack .../110-r-cran-fastmap_1.2.0-1_s390x.deb ... 399s Unpacking r-cran-fastmap (1.2.0-1) ... 399s Selecting previously unselected package r-cran-cachem. 399s Preparing to unpack .../111-r-cran-cachem_1.1.0-1_s390x.deb ... 399s Unpacking r-cran-cachem (1.1.0-1) ... 399s Selecting previously unselected package r-cran-memoise. 399s Preparing to unpack .../112-r-cran-memoise_2.0.1-1_all.deb ... 399s Unpacking r-cran-memoise (2.0.1-1) ... 399s Selecting previously unselected package r-cran-pkgconfig. 399s Preparing to unpack .../113-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 399s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 399s Selecting previously unselected package r-cran-plogr. 399s Preparing to unpack .../114-r-cran-plogr_0.2.0-3build1_all.deb ... 399s Unpacking r-cran-plogr (0.2.0-3build1) ... 399s Selecting previously unselected package r-cran-cpp11. 399s Preparing to unpack .../115-r-cran-cpp11_0.5.2-1_all.deb ... 399s Unpacking r-cran-cpp11 (0.5.2-1) ... 399s Selecting previously unselected package r-cran-rsqlite. 399s Preparing to unpack .../116-r-cran-rsqlite_2.3.9-1_s390x.deb ... 399s Unpacking r-cran-rsqlite (2.3.9-1) ... 399s Selecting previously unselected package r-cran-curl. 399s Preparing to unpack .../117-r-cran-curl_6.2.1+dfsg-1ubuntu1_s390x.deb ... 399s Unpacking r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 399s Selecting previously unselected package r-cran-jsonlite. 399s Preparing to unpack .../118-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ... 399s Unpacking r-cran-jsonlite (1.9.1+dfsg-1) ... 399s Selecting previously unselected package r-cran-mime. 399s Preparing to unpack .../119-r-cran-mime_0.12-2_s390x.deb ... 399s Unpacking r-cran-mime (0.12-2) ... 399s Selecting previously unselected package r-cran-sys. 399s Preparing to unpack .../120-r-cran-sys_3.4.3-1_s390x.deb ... 399s Unpacking r-cran-sys (3.4.3-1) ... 399s Selecting previously unselected package r-cran-askpass. 399s Preparing to unpack .../121-r-cran-askpass_1.2.1-1_s390x.deb ... 399s Unpacking r-cran-askpass (1.2.1-1) ... 399s Selecting previously unselected package r-cran-openssl. 399s Preparing to unpack .../122-r-cran-openssl_2.3.2+dfsg-1_s390x.deb ... 399s Unpacking r-cran-openssl (2.3.2+dfsg-1) ... 399s Selecting previously unselected package r-cran-r6. 399s Preparing to unpack .../123-r-cran-r6_2.6.1-1_all.deb ... 399s Unpacking r-cran-r6 (2.6.1-1) ... 399s Selecting previously unselected package r-cran-httr. 399s Preparing to unpack .../124-r-cran-httr_1.4.7+dfsg-1_all.deb ... 399s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 399s Selecting previously unselected package r-cran-png. 399s Preparing to unpack .../125-r-cran-png_0.1-8-1build2_s390x.deb ... 399s Unpacking r-cran-png (0.1-8-1build2) ... 399s Selecting previously unselected package r-bioc-zlibbioc. 399s Preparing to unpack .../126-r-bioc-zlibbioc_1.52.0+dfsg-2_all.deb ... 399s Unpacking r-bioc-zlibbioc (1.52.0+dfsg-2) ... 399s Selecting previously unselected package r-bioc-xvector. 399s Preparing to unpack .../127-r-bioc-xvector_0.46.0-2_s390x.deb ... 399s Unpacking r-bioc-xvector (0.46.0-2) ... 399s Selecting previously unselected package r-bioc-ucsc.utils. 399s Preparing to unpack .../128-r-bioc-ucsc.utils_1.2.0+ds-2_all.deb ... 399s Unpacking r-bioc-ucsc.utils (1.2.0+ds-2) ... 399s Selecting previously unselected package r-bioc-genomeinfodbdata. 399s Preparing to unpack .../129-r-bioc-genomeinfodbdata_1.2.13-2_all.deb ... 399s Unpacking r-bioc-genomeinfodbdata (1.2.13-2) ... 399s Selecting previously unselected package r-bioc-genomeinfodb. 399s Preparing to unpack .../130-r-bioc-genomeinfodb_1.42.3+dfsg-1_all.deb ... 399s Unpacking r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 399s Selecting previously unselected package r-cran-crayon. 399s Preparing to unpack .../131-r-cran-crayon_1.5.3-1_all.deb ... 399s Unpacking r-cran-crayon (1.5.3-1) ... 399s Selecting previously unselected package r-bioc-biostrings. 399s Preparing to unpack .../132-r-bioc-biostrings_2.74.1+dfsg-2_s390x.deb ... 399s Unpacking r-bioc-biostrings (2.74.1+dfsg-2) ... 400s Selecting previously unselected package r-bioc-keggrest. 400s Preparing to unpack .../133-r-bioc-keggrest_1.46.0+dfsg-2_all.deb ... 400s Unpacking r-bioc-keggrest (1.46.0+dfsg-2) ... 400s Selecting previously unselected package r-bioc-annotationdbi. 400s Preparing to unpack .../134-r-bioc-annotationdbi_1.68.0-2_all.deb ... 400s Unpacking r-bioc-annotationdbi (1.68.0-2) ... 400s Selecting previously unselected package r-bioc-biocio. 400s Preparing to unpack .../135-r-bioc-biocio_1.16.0+dfsg-2_all.deb ... 400s Unpacking r-bioc-biocio (1.16.0+dfsg-2) ... 400s Selecting previously unselected package r-cran-formatr. 400s Preparing to unpack .../136-r-cran-formatr_1.14-2_all.deb ... 400s Unpacking r-cran-formatr (1.14-2) ... 400s Selecting previously unselected package r-cran-lambda.r. 400s Preparing to unpack .../137-r-cran-lambda.r_1.2.4-2build1_all.deb ... 400s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 400s Selecting previously unselected package r-cran-futile.options. 400s Preparing to unpack .../138-r-cran-futile.options_1.0.1-3build1_all.deb ... 400s Unpacking r-cran-futile.options (1.0.1-3build1) ... 400s Selecting previously unselected package r-cran-futile.logger. 400s Preparing to unpack .../139-r-cran-futile.logger_1.4.3-4build1_all.deb ... 400s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 400s Selecting previously unselected package r-cran-snow. 400s Preparing to unpack .../140-r-cran-snow_1%3a0.4.4-2_all.deb ... 400s Unpacking r-cran-snow (1:0.4.4-2) ... 400s Selecting previously unselected package r-cran-codetools. 400s Preparing to unpack .../141-r-cran-codetools_0.2-20-1_all.deb ... 400s Unpacking r-cran-codetools (0.2-20-1) ... 400s Selecting previously unselected package r-cran-bh. 400s Preparing to unpack .../142-r-cran-bh_1.84.0-1_all.deb ... 400s Unpacking r-cran-bh (1.84.0-1) ... 400s Selecting previously unselected package r-bioc-biocparallel. 400s Preparing to unpack .../143-r-bioc-biocparallel_1.40.0-2_s390x.deb ... 400s Unpacking r-bioc-biocparallel (1.40.0-2) ... 400s Selecting previously unselected package r-bioc-genomicranges. 400s Preparing to unpack .../144-r-bioc-genomicranges_1.58.0+dfsg-2_s390x.deb ... 400s Unpacking r-bioc-genomicranges (1.58.0+dfsg-2) ... 400s Selecting previously unselected package r-cran-xml. 400s Preparing to unpack .../145-r-cran-xml_3.99-0.18-1_s390x.deb ... 400s Unpacking r-cran-xml (3.99-0.18-1) ... 400s Selecting previously unselected package r-cran-bitops. 400s Preparing to unpack .../146-r-cran-bitops_1.0-9-1_s390x.deb ... 400s Unpacking r-cran-bitops (1.0-9-1) ... 400s Selecting previously unselected package r-bioc-rhtslib. 400s Preparing to unpack .../147-r-bioc-rhtslib_3.2.0+dfsg-2_s390x.deb ... 400s Unpacking r-bioc-rhtslib (3.2.0+dfsg-2) ... 400s Selecting previously unselected package r-bioc-rsamtools. 400s Preparing to unpack .../148-r-bioc-rsamtools_2.22.0+dfsg-2_s390x.deb ... 400s Unpacking r-bioc-rsamtools (2.22.0+dfsg-2) ... 400s Selecting previously unselected package r-cran-matrixstats. 400s Preparing to unpack .../149-r-cran-matrixstats_1.5.0-1_s390x.deb ... 400s Unpacking r-cran-matrixstats (1.5.0-1) ... 400s Selecting previously unselected package r-bioc-matrixgenerics. 400s Preparing to unpack .../150-r-bioc-matrixgenerics_1.18.1-1_all.deb ... 400s Unpacking r-bioc-matrixgenerics (1.18.1-1) ... 400s Selecting previously unselected package r-cran-lattice. 400s Preparing to unpack .../151-r-cran-lattice_0.22-6-1_s390x.deb ... 400s Unpacking r-cran-lattice (0.22-6-1) ... 400s Selecting previously unselected package r-cran-matrix. 400s Preparing to unpack .../152-r-cran-matrix_1.7-3-1_s390x.deb ... 400s Unpacking r-cran-matrix (1.7-3-1) ... 400s Selecting previously unselected package r-cran-abind. 400s Preparing to unpack .../153-r-cran-abind_1.4-8-1_all.deb ... 400s Unpacking r-cran-abind (1.4-8-1) ... 400s Selecting previously unselected package r-bioc-s4arrays. 400s Preparing to unpack .../154-r-bioc-s4arrays_1.6.0+dfsg-2_s390x.deb ... 400s Unpacking r-bioc-s4arrays (1.6.0+dfsg-2) ... 400s Selecting previously unselected package r-bioc-sparsearray. 400s Preparing to unpack .../155-r-bioc-sparsearray_1.6.2+dfsg-1_s390x.deb ... 400s Unpacking r-bioc-sparsearray (1.6.2+dfsg-1) ... 400s Selecting previously unselected package r-bioc-delayedarray. 400s Preparing to unpack .../156-r-bioc-delayedarray_0.32.0+dfsg-2_s390x.deb ... 400s Unpacking r-bioc-delayedarray (0.32.0+dfsg-2) ... 400s Selecting previously unselected package r-bioc-summarizedexperiment. 400s Preparing to unpack .../157-r-bioc-summarizedexperiment_1.36.0+dfsg-2_all.deb ... 400s Unpacking r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 400s Selecting previously unselected package r-bioc-genomicalignments. 400s Preparing to unpack .../158-r-bioc-genomicalignments_1.42.0-2_s390x.deb ... 400s Unpacking r-bioc-genomicalignments (1.42.0-2) ... 400s Selecting previously unselected package r-cran-rcurl. 400s Preparing to unpack .../159-r-cran-rcurl_1.98-1.16+dfsg-1_s390x.deb ... 400s Unpacking r-cran-rcurl (1.98-1.16+dfsg-1) ... 400s Selecting previously unselected package r-cran-rjson. 400s Preparing to unpack .../160-r-cran-rjson_0.2.23-1_s390x.deb ... 400s Unpacking r-cran-rjson (0.2.23-1) ... 400s Selecting previously unselected package r-cran-yaml. 400s Preparing to unpack .../161-r-cran-yaml_2.3.10-1_s390x.deb ... 400s Unpacking r-cran-yaml (2.3.10-1) ... 400s Selecting previously unselected package r-cran-restfulr. 400s Preparing to unpack .../162-r-cran-restfulr_0.0.15-1_s390x.deb ... 400s Unpacking r-cran-restfulr (0.0.15-1) ... 400s Selecting previously unselected package r-bioc-rtracklayer. 400s Preparing to unpack .../163-r-bioc-rtracklayer_1.66.0-2_s390x.deb ... 400s Unpacking r-bioc-rtracklayer (1.66.0-2) ... 400s Selecting previously unselected package r-bioc-bsgenome. 400s Preparing to unpack .../164-r-bioc-bsgenome_1.74.0-2_all.deb ... 400s Unpacking r-bioc-bsgenome (1.74.0-2) ... 400s Selecting previously unselected package r-bioc-genomicfeatures. 400s Preparing to unpack .../165-r-bioc-genomicfeatures_1.58.0+dfsg-2_all.deb ... 400s Unpacking r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 400s Selecting previously unselected package r-bioc-variantannotation. 400s Preparing to unpack .../166-r-bioc-variantannotation_1.52.0-2_s390x.deb ... 400s Unpacking r-bioc-variantannotation (1.52.0-2) ... 400s Selecting previously unselected package r-cran-iterators. 400s Preparing to unpack .../167-r-cran-iterators_1.0.14-1_all.deb ... 400s Unpacking r-cran-iterators (1.0.14-1) ... 400s Selecting previously unselected package r-cran-foreach. 400s Preparing to unpack .../168-r-cran-foreach_1.5.2-1_all.deb ... 400s Unpacking r-cran-foreach (1.5.2-1) ... 400s Selecting previously unselected package r-cran-data.table. 400s Preparing to unpack .../169-r-cran-data.table_1.17.0+dfsg-1_s390x.deb ... 400s Unpacking r-cran-data.table (1.17.0+dfsg-1) ... 400s Selecting previously unselected package r-cran-generics. 400s Preparing to unpack .../170-r-cran-generics_0.1.3-1_all.deb ... 400s Unpacking r-cran-generics (0.1.3-1) ... 400s Selecting previously unselected package r-cran-magrittr. 400s Preparing to unpack .../171-r-cran-magrittr_2.0.3-1_s390x.deb ... 400s Unpacking r-cran-magrittr (2.0.3-1) ... 400s Selecting previously unselected package r-cran-utf8. 400s Preparing to unpack .../172-r-cran-utf8_1.2.4-1_s390x.deb ... 400s Unpacking r-cran-utf8 (1.2.4-1) ... 400s Selecting previously unselected package r-cran-pillar. 400s Preparing to unpack .../173-r-cran-pillar_1.10.1+dfsg-1_all.deb ... 400s Unpacking r-cran-pillar (1.10.1+dfsg-1) ... 400s Selecting previously unselected package r-cran-fansi. 400s Preparing to unpack .../174-r-cran-fansi_1.0.5-1_s390x.deb ... 400s Unpacking r-cran-fansi (1.0.5-1) ... 400s Selecting previously unselected package r-cran-tibble. 400s Preparing to unpack .../175-r-cran-tibble_3.2.1+dfsg-3_s390x.deb ... 400s Unpacking r-cran-tibble (3.2.1+dfsg-3) ... 401s Selecting previously unselected package r-cran-withr. 401s Preparing to unpack .../176-r-cran-withr_3.0.2+dfsg-1_all.deb ... 401s Unpacking r-cran-withr (3.0.2+dfsg-1) ... 401s Selecting previously unselected package r-cran-tidyselect. 401s Preparing to unpack .../177-r-cran-tidyselect_1.2.1+dfsg-1_s390x.deb ... 401s Unpacking r-cran-tidyselect (1.2.1+dfsg-1) ... 401s Selecting previously unselected package r-cran-dplyr. 401s Preparing to unpack .../178-r-cran-dplyr_1.1.4-4_s390x.deb ... 401s Unpacking r-cran-dplyr (1.1.4-4) ... 401s Selecting previously unselected package r-bioc-titancna. 401s Preparing to unpack .../179-r-bioc-titancna_1.44.0-2_s390x.deb ... 401s Unpacking r-bioc-titancna (1.44.0-2) ... 401s Setting up libgraphite2-3:s390x (1.3.14-2ubuntu1) ... 401s Setting up libpixman-1-0:s390x (0.44.0-3) ... 401s Setting up libsharpyuv0:s390x (1.5.0-0.1) ... 401s Setting up libncurses-dev:s390x (6.5+20250216-2) ... 401s Setting up libxrender1:s390x (1:0.9.10-1.1build1) ... 401s Setting up libdatrie1:s390x (0.2.13-3build1) ... 401s Setting up libxcb-render0:s390x (1.17.0-2) ... 401s Setting up unzip (6.0-28ubuntu6) ... 401s Setting up x11-common (1:7.7+23ubuntu3) ... 401s Setting up libdeflate0:s390x (1.23-1) ... 401s Setting up libxcb-shm0:s390x (1.17.0-2) ... 401s Setting up libreadline-dev:s390x (8.2-6) ... 401s Setting up libgomp1:s390x (15-20250222-0ubuntu1) ... 401s Setting up libjbig0:s390x (2.1-6.1ubuntu2) ... 401s Setting up libpcre2-16-0:s390x (10.45-1) ... 401s Setting up zip (3.0-14ubuntu2) ... 401s Setting up libpcre2-32-0:s390x (10.45-1) ... 401s Setting up libblas3:s390x (3.12.1-2) ... 401s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode 401s Setting up libtirpc-dev:s390x (1.3.4+ds-1.3) ... 401s Setting up libpkgconf3:s390x (1.8.1-4) ... 401s Setting up libfreetype6:s390x (2.13.3+dfsg-1) ... 401s Setting up fonts-dejavu-mono (2.37-8) ... 401s Setting up libmpc3:s390x (1.3.1-1build2) ... 401s Setting up libtcl8.6:s390x (8.6.16+dfsg-1) ... 401s Setting up icu-devtools (76.1-1ubuntu2) ... 401s Setting up fonts-dejavu-core (2.37-8) ... 401s Setting up pkgconf-bin (1.8.1-4) ... 401s Setting up libjpeg-turbo8:s390x (2.1.5-3ubuntu2) ... 401s Setting up libgfortran5:s390x (15-20250222-0ubuntu1) ... 401s Setting up libwebp7:s390x (1.5.0-0.1) ... 401s Setting up liblzma-dev:s390x (5.6.4-1) ... 401s Setting up libubsan1:s390x (15-20250222-0ubuntu1) ... 401s Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1ubuntu1) ... 401s Setting up libpcre2-posix3:s390x (10.45-1) ... 401s Setting up libasan8:s390x (15-20250222-0ubuntu1) ... 401s Setting up libharfbuzz0b:s390x (10.2.0-1) ... 401s Setting up libthai-data (0.1.29-2build1) ... 401s Setting up libxss1:s390x (1:1.2.3-1build3) ... 401s Setting up libpaper2:s390x (2.2.5-0.3) ... 401s Setting up libisl23:s390x (0.27-1) ... 401s Setting up libdeflate-dev:s390x (1.23-1) ... 401s Setting up libicu-dev:s390x (76.1-1ubuntu2) ... 401s Setting up xdg-utils (1.2.1-2ubuntu1) ... 401s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 401s Setting up libcc1-0:s390x (15-20250222-0ubuntu1) ... 401s Setting up libblas-dev:s390x (3.12.1-2) ... 401s update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode 401s Setting up dctrl-tools (2.24-3build3) ... 401s Setting up libitm1:s390x (15-20250222-0ubuntu1) ... 401s Setting up libbz2-dev:s390x (1.0.8-6) ... 401s Setting up libjpeg8:s390x (8c-2ubuntu11) ... 401s Setting up libice6:s390x (2:1.1.1-1) ... 401s Setting up libjpeg-turbo8-dev:s390x (2.1.5-3ubuntu2) ... 401s Setting up liblapack3:s390x (3.12.1-2) ... 401s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode 401s Setting up libpcre2-dev:s390x (10.45-1) ... 401s Setting up fontconfig-config (2.15.0-2ubuntu1) ... 401s Setting up libpng-dev:s390x (1.6.47-1) ... 401s Setting up libpaper-utils (2.2.5-0.3) ... 401s Setting up pkgconf:s390x (1.8.1-4) ... 401s Setting up libthai0:s390x (0.1.29-2build1) ... 401s Setting up liblapack-dev:s390x (3.12.1-2) ... 401s update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode 401s Setting up cpp-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 401s Setting up cpp-14 (14.2.0-17ubuntu3) ... 401s Setting up libtiff6:s390x (4.5.1+git230720-4ubuntu4) ... 401s Setting up libfontconfig1:s390x (2.15.0-2ubuntu1) ... 401s Setting up libgcc-14-dev:s390x (14.2.0-17ubuntu3) ... 401s Setting up libjpeg8-dev:s390x (8c-2ubuntu11) ... 401s Setting up libstdc++-14-dev:s390x (14.2.0-17ubuntu3) ... 401s Setting up libsm6:s390x (2:1.2.4-1) ... 401s Setting up libgfortran-14-dev:s390x (14.2.0-17ubuntu3) ... 401s Setting up fontconfig (2.15.0-2ubuntu1) ... 403s Regenerating fonts cache... done. 403s Setting up libxft2:s390x (2.3.6-1build1) ... 403s Setting up libboost1.83-dev:s390x (1.83.0-4.1ubuntu2) ... 403s Setting up cpp-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 403s Setting up libtk8.6:s390x (8.6.16-1) ... 403s Setting up libpango-1.0-0:s390x (1.56.2-1) ... 403s Setting up libjpeg-dev:s390x (8c-2ubuntu11) ... 403s Setting up libcairo2:s390x (1.18.2-2) ... 403s Setting up gcc-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 403s Setting up gcc-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 403s Setting up libxt6t64:s390x (1:1.2.1-1.2build1) ... 403s Setting up g++-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 403s Setting up cpp (4:14.2.0-1ubuntu1) ... 403s Setting up libboost-dev:s390x (1.83.0.2ubuntu1) ... 403s Setting up libpangoft2-1.0-0:s390x (1.56.2-1) ... 403s Setting up libpangocairo-1.0-0:s390x (1.56.2-1) ... 403s Setting up gfortran-14-s390x-linux-gnu (14.2.0-17ubuntu3) ... 403s Setting up g++-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 403s Setting up gcc-14 (14.2.0-17ubuntu3) ... 403s Setting up r-base-core (4.4.3-1) ... 403s Creating config file /etc/R/Renviron with new version 403s Setting up r-cran-crayon (1.5.3-1) ... 403s Setting up r-cran-futile.options (1.0.1-3build1) ... 403s Setting up r-cran-lattice (0.22-6-1) ... 403s Setting up r-cran-formatr (1.14-2) ... 403s Setting up r-cran-xml (3.99-0.18-1) ... 403s Setting up g++-14 (14.2.0-17ubuntu3) ... 403s Setting up r-cran-rjson (0.2.23-1) ... 403s Setting up r-cran-r6 (2.6.1-1) ... 403s Setting up gfortran-14 (14.2.0-17ubuntu3) ... 403s Setting up r-cran-magrittr (2.0.3-1) ... 403s Setting up r-bioc-genomeinfodbdata (1.2.13-2) ... 403s Setting up r-cran-bh (1.84.0-1) ... 403s Setting up r-cran-curl (6.2.1+dfsg-1ubuntu1) ... 403s Setting up r-cran-codetools (0.2-20-1) ... 403s Setting up r-bioc-biocgenerics (0.52.0-2) ... 403s Setting up r-cran-rlang (1.1.5-1) ... 403s Setting up r-cran-matrixstats (1.5.0-1) ... 403s Setting up gfortran-s390x-linux-gnu (4:14.2.0-1ubuntu1) ... 403s Setting up r-bioc-matrixgenerics (1.18.1-1) ... 403s Setting up r-cran-sys (3.4.3-1) ... 403s Setting up r-cran-plogr (0.2.0-3build1) ... 403s Setting up r-cran-withr (3.0.2+dfsg-1) ... 403s Setting up r-cran-mime (0.12-2) ... 403s Setting up r-cran-generics (0.1.3-1) ... 403s Setting up r-cran-iterators (1.0.14-1) ... 403s Setting up r-cran-abind (1.4-8-1) ... 403s Setting up r-cran-yaml (2.3.10-1) ... 403s Setting up r-cran-lambda.r (1.2.4-2build1) ... 403s Setting up r-cran-dbi (1.2.3-1) ... 403s Setting up r-cran-foreach (1.5.2-1) ... 403s Setting up r-cran-fansi (1.0.5-1) ... 403s Setting up r-cran-snow (1:0.4.4-2) ... 403s Setting up r-cran-data.table (1.17.0+dfsg-1) ... 403s Setting up r-cran-glue (1.8.0-1) ... 403s Setting up r-cran-bit (4.6.0+dfsg-1) ... 403s Setting up r-cran-cli (3.6.4-1) ... 403s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 403s Setting up r-cran-bitops (1.0-9-1) ... 403s Setting up r-cran-bit64 (4.6.0-1-1ubuntu2) ... 403s Setting up gcc (4:14.2.0-1ubuntu1) ... 403s Setting up r-bioc-zlibbioc (1.52.0+dfsg-2) ... 403s Setting up r-cran-askpass (1.2.1-1) ... 403s Setting up r-cran-fastmap (1.2.0-1) ... 403s Setting up r-cran-png (0.1-8-1build2) ... 403s Setting up r-bioc-biobase (2.66.0-2) ... 403s Setting up r-cran-jsonlite (1.9.1+dfsg-1) ... 403s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 403s Setting up r-cran-utf8 (1.2.4-1) ... 403s Setting up r-cran-cpp11 (0.5.2-1) ... 403s Setting up r-bioc-s4vectors (0.44.0+dfsg-2) ... 403s Setting up r-cran-futile.logger (1.4.3-4build1) ... 403s Setting up r-cran-matrix (1.7-3-1) ... 403s Setting up g++ (4:14.2.0-1ubuntu1) ... 403s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 403s Setting up r-cran-cachem (1.1.0-1) ... 403s Setting up build-essential (12.10ubuntu1) ... 403s Setting up r-bioc-iranges (2.40.1-2) ... 403s Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... 403s Setting up r-cran-restfulr (0.0.15-1) ... 403s Setting up r-cran-vctrs (0.6.5-1) ... 403s Setting up r-cran-pillar (1.10.1+dfsg-1) ... 403s Setting up r-cran-openssl (2.3.2+dfsg-1) ... 403s Setting up r-bioc-s4arrays (1.6.0+dfsg-2) ... 403s Setting up r-bioc-biocparallel (1.40.0-2) ... 403s Setting up r-bioc-rhtslib (3.2.0+dfsg-2) ... 403s Setting up r-cran-tibble (3.2.1+dfsg-3) ... 403s Setting up r-bioc-biocio (1.16.0+dfsg-2) ... 403s Setting up gfortran (4:14.2.0-1ubuntu1) ... 403s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 403s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 403s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 403s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 403s Setting up r-cran-tidyselect (1.2.1+dfsg-1) ... 403s Setting up r-cran-httr (1.4.7+dfsg-1) ... 403s Setting up r-cran-memoise (2.0.1-1) ... 403s Setting up r-cran-blob (1.2.4-1) ... 403s Setting up r-bioc-xvector (0.46.0-2) ... 403s Setting up r-cran-dplyr (1.1.4-4) ... 403s Setting up r-cran-rsqlite (2.3.9-1) ... 403s Setting up r-base-dev (4.4.3-1) ... 403s Setting up r-bioc-ucsc.utils (1.2.0+ds-2) ... 403s Setting up r-bioc-sparsearray (1.6.2+dfsg-1) ... 403s Setting up r-bioc-genomeinfodb (1.42.3+dfsg-1) ... 403s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 403s Setting up r-bioc-delayedarray (0.32.0+dfsg-2) ... 403s Setting up r-bioc-genomicranges (1.58.0+dfsg-2) ... 403s Setting up r-bioc-biostrings (2.74.1+dfsg-2) ... 403s Setting up r-bioc-rsamtools (2.22.0+dfsg-2) ... 403s Setting up r-bioc-summarizedexperiment (1.36.0+dfsg-2) ... 403s Setting up r-bioc-keggrest (1.46.0+dfsg-2) ... 403s Setting up r-bioc-annotationdbi (1.68.0-2) ... 403s Setting up r-bioc-genomicalignments (1.42.0-2) ... 403s Setting up r-bioc-rtracklayer (1.66.0-2) ... 403s Setting up r-bioc-genomicfeatures (1.58.0+dfsg-2) ... 403s Setting up r-bioc-bsgenome (1.74.0-2) ... 403s Setting up r-bioc-variantannotation (1.52.0-2) ... 403s Setting up r-bioc-titancna (1.44.0-2) ... 403s Processing triggers for libc-bin (2.41-1ubuntu2) ... 403s Processing triggers for man-db (2.13.0-1) ... 405s Processing triggers for install-info (7.1.1-1) ... 406s autopkgtest [17:56:31]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 406s autopkgtest [17:56:31]: test pkg-r-autopkgtest: [----------------------- 406s Test: Try to load the R library TitanCNA 406s 406s R version 4.4.3 (2025-02-28) -- "Trophy Case" 406s Copyright (C) 2025 The R Foundation for Statistical Computing 406s Platform: s390x-ibm-linux-gnu 406s 406s R is free software and comes with ABSOLUTELY NO WARRANTY. 406s You are welcome to redistribute it under certain conditions. 406s Type 'license()' or 'licence()' for distribution details. 406s 406s R is a collaborative project with many contributors. 406s Type 'contributors()' for more information and 406s 'citation()' on how to cite R or R packages in publications. 406s 406s Type 'demo()' for some demos, 'help()' for on-line help, or 406s 'help.start()' for an HTML browser interface to help. 406s Type 'q()' to quit R. 406s 406s > library('TitanCNA') 419s > 419s > 419s There were 12 warnings (use warnings() to see them) 419s Other tests are currently unsupported! 419s They will be progressively added. 419s autopkgtest [17:56:44]: test pkg-r-autopkgtest: -----------------------] 420s autopkgtest [17:56:45]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 420s pkg-r-autopkgtest PASS 420s autopkgtest [17:56:45]: @@@@@@@@@@@@@@@@@@@@ summary 420s pkg-r-autopkgtest PASS 437s nova [W] Using flock in prodstack6-s390x 437s Creating nova instance adt-plucky-s390x-r-bioc-titancna-20250315-174945-juju-7f2275-prod-proposed-migration-environment-20-47b34ce4-991b-481e-b689-65b9a2183b7c from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)... 437s nova [W] Timed out waiting for fb30eb0b-2576-4b79-9f47-2f365ed674bf to get deleted.