0s autopkgtest [17:49:08]: starting date and time: 2025-03-15 17:49:08+0000
  0s autopkgtest [17:49:08]: git checkout: 325255d2 Merge branch 'pin-any-arch' into 'ubuntu/production'
  0s autopkgtest [17:49:08]: host juju-7f2275-prod-proposed-migration-environment-15; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.fa91d2vn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:glibc --apt-upgrade r-bioc-sparsematrixstats --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=glibc/2.41-1ubuntu2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-s390x --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-15@bos03-s390x-27.secgroup --name adt-plucky-s390x-r-bioc-sparsematrixstats-20250315-174908-juju-7f2275-prod-proposed-migration-environment-15-f4ac163b-6f44-4b67-bb83-bcac54fb665d --image adt/ubuntu-plucky-s390x-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-15 --net-id=net_prod-proposed-migration-s390x -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,keyserver.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com,radosgw.ps5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
118s autopkgtest [17:51:06]: testbed dpkg architecture: s390x
118s autopkgtest [17:51:06]: testbed apt version: 2.9.33
118s autopkgtest [17:51:06]: @@@@@@@@@@@@@@@@@@@@ test bed setup
119s autopkgtest [17:51:07]: testbed release detected to be: None
119s autopkgtest [17:51:07]: updating testbed package index (apt update)
120s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed InRelease [126 kB]
120s Hit:2 http://ftpmaster.internal/ubuntu plucky InRelease
120s Hit:3 http://ftpmaster.internal/ubuntu plucky-updates InRelease
120s Hit:4 http://ftpmaster.internal/ubuntu plucky-security InRelease
120s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse Sources [15.8 kB]
120s Get:6 http://ftpmaster.internal/ubuntu plucky-proposed/main Sources [99.7 kB]
120s Get:7 http://ftpmaster.internal/ubuntu plucky-proposed/universe Sources [379 kB]
121s Get:8 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x Packages [113 kB]
121s Get:9 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x c-n-f Metadata [1824 B]
121s Get:10 http://ftpmaster.internal/ubuntu plucky-proposed/restricted s390x c-n-f Metadata [116 B]
121s Get:11 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x Packages [320 kB]
121s Get:12 http://ftpmaster.internal/ubuntu plucky-proposed/universe s390x c-n-f Metadata [13.4 kB]
121s Get:13 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x Packages [3776 B]
121s Get:14 http://ftpmaster.internal/ubuntu plucky-proposed/multiverse s390x c-n-f Metadata [240 B]
121s Fetched 1073 kB in 2s (643 kB/s)
122s Reading package lists...
123s + lsb_release --codename --short
123s + RELEASE=plucky
123s + cat
123s Reading package lists...+ [ plucky != trusty ]
123s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y --allow-downgrades -o Dpkg::Options::=--force-confnew dist-upgrade
123s 
123s Building dependency tree...
123s Reading state information...
123s Calculating upgrade...
123s Calculating upgrade...
123s The following packages were automatically installed and are no longer required:
123s   libnsl2 libpython3.12-minimal libpython3.12-stdlib libpython3.12t64
123s   linux-headers-6.11.0-8 linux-headers-6.11.0-8-generic
123s   linux-modules-6.11.0-8-generic linux-tools-6.11.0-8
123s   linux-tools-6.11.0-8-generic
123s Use 'sudo apt autoremove' to remove them.
123s The following packages will be upgraded:
123s   pinentry-curses python3-jinja2 strace
123s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
123s Need to get 652 kB of archives.
123s After this operation, 27.6 kB of additional disk space will be used.
123s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x strace s390x 6.13+ds-1ubuntu1 [500 kB]
124s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x pinentry-curses s390x 1.3.1-2ubuntu3 [42.9 kB]
124s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x python3-jinja2 all 3.1.5-2ubuntu1 [109 kB]
124s Fetched 652 kB in 1s (623 kB/s)
124s (Reading database ... 
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(Reading database ... 81428 files and directories currently installed.)
124s Preparing to unpack .../strace_6.13+ds-1ubuntu1_s390x.deb ...
124s Unpacking strace (6.13+ds-1ubuntu1) over (6.11-0ubuntu1) ...
124s Preparing to unpack .../pinentry-curses_1.3.1-2ubuntu3_s390x.deb ...
124s Unpacking pinentry-curses (1.3.1-2ubuntu3) over (1.3.1-2ubuntu2) ...
124s Preparing to unpack .../python3-jinja2_3.1.5-2ubuntu1_all.deb ...
124s Unpacking python3-jinja2 (3.1.5-2ubuntu1) over (3.1.5-2) ...
125s Setting up pinentry-curses (1.3.1-2ubuntu3) ...
125s Setting up python3-jinja2 (3.1.5-2ubuntu1) ...
125s Setting up strace (6.13+ds-1ubuntu1) ...
125s Processing triggers for man-db (2.13.0-1) ...
125s + rm /etc/apt/preferences.d/force-downgrade-to-release.pref
125s + /usr/lib/apt/apt-helper analyze-pattern ?true
125s + uname -r
125s + sed s/\./\\./g
125s + running_kernel_pattern=^linux-.*6\.14\.0-10-generic.*
125s + apt list ?obsolete
125s + tail -n+2+ cut -d/ -f1
125s 
125s + grep -v ^linux-.*6\.14\.0-10-generic.*
125s + obsolete_pkgs=linux-headers-6.11.0-8-generic
125s linux-headers-6.11.0-8
125s linux-modules-6.11.0-8-generic
125s linux-tools-6.11.0-8-generic
125s linux-tools-6.11.0-8
125s + DEBIAN_FRONTEND=noninteractive eatmydata apt-get -y purge --autoremove linux-headers-6.11.0-8-generic linux-headers-6.11.0-8 linux-modules-6.11.0-8-generic linux-tools-6.11.0-8-generic linux-tools-6.11.0-8
125s Reading package lists...
125s Building dependency tree...
125s Reading state information...
126s Solving dependencies...
126s The following packages will be REMOVED:
126s   libnsl2* libpython3.12-minimal* libpython3.12-stdlib* libpython3.12t64*
126s   linux-headers-6.11.0-8* linux-headers-6.11.0-8-generic*
126s   linux-modules-6.11.0-8-generic* linux-tools-6.11.0-8*
126s   linux-tools-6.11.0-8-generic*
126s 0 upgraded, 0 newly installed, 9 to remove and 5 not upgraded.
126s After this operation, 167 MB disk space will be freed.
126s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 81428 files and directories currently installed.)
126s Removing linux-tools-6.11.0-8-generic (6.11.0-8.8) ...
126s Removing linux-tools-6.11.0-8 (6.11.0-8.8) ...
126s Removing libpython3.12t64:s390x (3.12.9-1) ...
126s Removing libpython3.12-stdlib:s390x (3.12.9-1) ...
126s Removing libnsl2:s390x (1.3.0-3build3) ...
126s Removing libpython3.12-minimal:s390x (3.12.9-1) ...
126s Removing linux-headers-6.11.0-8-generic (6.11.0-8.8) ...
126s Removing linux-headers-6.11.0-8 (6.11.0-8.8) ...
127s Removing linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
127s Processing triggers for libc-bin (2.41-1ubuntu1) ...
127s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56328 files and directories currently installed.)
127s Purging configuration files for libpython3.12-minimal:s390x (3.12.9-1) ...
127s Purging configuration files for linux-modules-6.11.0-8-generic (6.11.0-8.8) ...
127s + grep -q trusty /etc/lsb-release
127s + [ ! -d /usr/share/doc/unattended-upgrades ]
127s + [ ! -d /usr/share/doc/lxd ]
127s + [ ! -d /usr/share/doc/lxd-client ]
127s + [ ! -d /usr/share/doc/snapd ]
127s + type iptables
127s + cat
127s + chmod 755 /etc/rc.local
127s + . /etc/rc.local
127s + iptables -w -t mangle -A FORWARD -p tcp --tcp-flags SYN,RST SYN -j TCPMSS --clamp-mss-to-pmtu
127s + iptables -A OUTPUT -d 10.255.255.1/32 -p tcp -j DROP
127s + iptables -A OUTPUT -d 10.255.255.2/32 -p tcp -j DROP
127s + uname -m
127s + [ s390x = ppc64le ]
127s + [ -d /run/systemd/system ]
127s + systemd-detect-virt --quiet --vm
127s + mkdir -p /etc/systemd/system/systemd-random-seed.service.d/
127s + cat
127s + grep -q lz4 /etc/initramfs-tools/initramfs.conf
127s + echo COMPRESS=lz4
127s autopkgtest [17:51:15]: upgrading testbed (apt dist-upgrade and autopurge)
127s Reading package lists...
127s Building dependency tree...
127s Reading state information...
127s Calculating upgrade...Starting pkgProblemResolver with broken count: 0
127s Starting 2 pkgProblemResolver with broken count: 0
127s Done
128s Entering ResolveByKeep
128s 
128s Calculating upgrade...
128s The following packages will be upgraded:
128s   libc-bin libc-dev-bin libc6 libc6-dev locales
128s 5 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
128s Need to get 9512 kB of archives.
128s After this operation, 8192 B of additional disk space will be used.
128s Get:1 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6-dev s390x 2.41-1ubuntu2 [1678 kB]
130s Get:2 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-dev-bin s390x 2.41-1ubuntu2 [24.3 kB]
130s Get:3 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc6 s390x 2.41-1ubuntu2 [2892 kB]
133s Get:4 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x libc-bin s390x 2.41-1ubuntu2 [671 kB]
133s Get:5 http://ftpmaster.internal/ubuntu plucky-proposed/main s390x locales all 2.41-1ubuntu2 [4246 kB]
138s Preconfiguring packages ...
138s Fetched 9512 kB in 10s (979 kB/s)
138s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 56326 files and directories currently installed.)
138s Preparing to unpack .../libc6-dev_2.41-1ubuntu2_s390x.deb ...
138s Unpacking libc6-dev:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
138s Preparing to unpack .../libc-dev-bin_2.41-1ubuntu2_s390x.deb ...
138s Unpacking libc-dev-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
138s Preparing to unpack .../libc6_2.41-1ubuntu2_s390x.deb ...
138s Unpacking libc6:s390x (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
138s Setting up libc6:s390x (2.41-1ubuntu2) ...
138s (Reading database ... 
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(Reading database ... 56326 files and directories currently installed.)
138s Preparing to unpack .../libc-bin_2.41-1ubuntu2_s390x.deb ...
138s Unpacking libc-bin (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
138s Setting up libc-bin (2.41-1ubuntu2) ...
138s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 56326 files and directories currently installed.)
138s Preparing to unpack .../locales_2.41-1ubuntu2_all.deb ...
138s Unpacking locales (2.41-1ubuntu2) over (2.41-1ubuntu1) ...
138s Setting up locales (2.41-1ubuntu2) ...
139s Generating locales (this might take a while)...
140s   en_US.UTF-8... done
140s Generation complete.
140s Setting up libc-dev-bin (2.41-1ubuntu2) ...
140s Setting up libc6-dev:s390x (2.41-1ubuntu2) ...
140s Processing triggers for man-db (2.13.0-1) ...
141s Processing triggers for systemd (257.3-1ubuntu3) ...
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
141s Starting pkgProblemResolver with broken count: 0
141s Starting 2 pkgProblemResolver with broken count: 0
141s Done
142s Solving dependencies...
142s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
142s autopkgtest [17:51:30]: rebooting testbed after setup commands that affected boot
162s autopkgtest [17:51:50]: testbed running kernel: Linux 6.14.0-10-generic #10-Ubuntu SMP Wed Mar 12 14:53:49 UTC 2025
165s autopkgtest [17:51:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-sparsematrixstats
167s Get:1 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsematrixstats 1.18.0+dfsg-2 (dsc) [2332 B]
167s Get:2 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsematrixstats 1.18.0+dfsg-2 (tar) [471 kB]
167s Get:3 http://ftpmaster.internal/ubuntu plucky/universe r-bioc-sparsematrixstats 1.18.0+dfsg-2 (diff) [3264 B]
167s gpgv: Signature made Sat Jan 11 21:20:45 2025 UTC
167s gpgv:                using RSA key 724D609337113C710550D7473C26763F6C67E6E2
167s gpgv:                issuer "crusoe@debian.org"
167s gpgv: Can't check signature: No public key
167s dpkg-source: warning: cannot verify inline signature for ./r-bioc-sparsematrixstats_1.18.0+dfsg-2.dsc: no acceptable signature found
167s autopkgtest [17:51:55]: testing package r-bioc-sparsematrixstats version 1.18.0+dfsg-2
169s autopkgtest [17:51:57]: build not needed
179s autopkgtest [17:52:07]: test pkg-r-autopkgtest: preparing testbed
179s Reading package lists...
179s Building dependency tree...
179s Reading state information...
179s Starting pkgProblemResolver with broken count: 0
179s Starting 2 pkgProblemResolver with broken count: 0
179s Done
180s The following NEW packages will be installed:
180s   build-essential cpp cpp-14 cpp-14-s390x-linux-gnu cpp-s390x-linux-gnu
180s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
180s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
180s   g++ g++-14 g++-14-s390x-linux-gnu g++-s390x-linux-gnu gcc gcc-14
180s   gcc-14-s390x-linux-gnu gcc-s390x-linux-gnu gfortran gfortran-14
180s   gfortran-14-s390x-linux-gnu gfortran-s390x-linux-gnu icu-devtools
180s   javascript-common libasan8 libbibtex-parser-perl libblas-dev libblas3
180s   libbz2-dev libcairo2 libcc1-0 libdatrie1 libdeflate-dev libdeflate0
180s   libfontconfig1 libfreetype6 libgcc-14-dev libgfortran-14-dev libgfortran5
180s   libgomp1 libgraphite2-3 libharfbuzz0b libice6 libicu-dev libio-string-perl
180s   libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev
180s   libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3
180s   libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables
180s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
180s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
180s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
180s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblua5.4-0
180s   liblzma-dev libmpc3 libmpfi0 libncurses-dev libpango-1.0-0
180s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper2 libpcre2-16-0
180s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
180s   libpng-dev libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6
180s   libstdc++-14-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data
180s   libthai0 libtiff6 libtirpc-dev libtk8.6 libubsan1 libwebp7 libxaw7
180s   libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1
180s   libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv
180s   node-normalize.css pandoc pandoc-data pkg-r-autopkgtest pkgconf pkgconf-bin
180s   r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocstyle
180s   r-bioc-biocversion r-bioc-matrixgenerics r-bioc-sparsematrixstats
180s   r-cran-base64enc r-cran-bench r-cran-biocmanager r-cran-bookdown r-cran-brio
180s   r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-commonmark
180s   r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate
180s   r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-fs r-cran-glue
180s   r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite
180s   r-cran-knitr r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
180s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
180s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
180s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-profmem r-cran-promises
180s   r-cran-ps r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang
180s   r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny
180s   r-cran-sourcetools r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-utf8
180s   r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml
180s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
180s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
180s 0 upgraded, 215 newly installed, 0 to remove and 0 not upgraded.
180s Need to get 346 MB of archives.
180s After this operation, 1145 MB of additional disk space will be used.
180s Get:1 http://ftpmaster.internal/ubuntu plucky/main s390x libisl23 s390x 0.27-1 [704 kB]
181s Get:2 http://ftpmaster.internal/ubuntu plucky/main s390x libmpc3 s390x 1.3.1-1build2 [57.8 kB]
181s Get:3 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [9572 kB]
190s Get:4 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-14 s390x 14.2.0-17ubuntu3 [1028 B]
190s Get:5 http://ftpmaster.internal/ubuntu plucky/main s390x cpp-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [5556 B]
190s Get:6 http://ftpmaster.internal/ubuntu plucky/main s390x cpp s390x 4:14.2.0-1ubuntu1 [22.4 kB]
190s Get:7 http://ftpmaster.internal/ubuntu plucky/main s390x libcc1-0 s390x 15-20250222-0ubuntu1 [49.2 kB]
190s Get:8 http://ftpmaster.internal/ubuntu plucky/main s390x libgomp1 s390x 15-20250222-0ubuntu1 [152 kB]
190s Get:9 http://ftpmaster.internal/ubuntu plucky/main s390x libitm1 s390x 15-20250222-0ubuntu1 [31.2 kB]
190s Get:10 http://ftpmaster.internal/ubuntu plucky/main s390x libasan8 s390x 15-20250222-0ubuntu1 [2970 kB]
192s Get:11 http://ftpmaster.internal/ubuntu plucky/main s390x libubsan1 s390x 15-20250222-0ubuntu1 [1212 kB]
193s Get:12 http://ftpmaster.internal/ubuntu plucky/main s390x libgcc-14-dev s390x 14.2.0-17ubuntu3 [1037 kB]
194s Get:13 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [18.7 MB]
209s Get:14 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-14 s390x 14.2.0-17ubuntu3 [526 kB]
209s Get:15 http://ftpmaster.internal/ubuntu plucky/main s390x gcc-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1204 B]
209s Get:16 http://ftpmaster.internal/ubuntu plucky/main s390x gcc s390x 4:14.2.0-1ubuntu1 [5004 B]
209s Get:17 http://ftpmaster.internal/ubuntu plucky/main s390x libstdc++-14-dev s390x 14.2.0-17ubuntu3 [2611 kB]
211s Get:18 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [11.0 MB]
222s Get:19 http://ftpmaster.internal/ubuntu plucky/main s390x g++-14 s390x 14.2.0-17ubuntu3 [21.8 kB]
222s Get:20 http://ftpmaster.internal/ubuntu plucky/main s390x g++-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [956 B]
222s Get:21 http://ftpmaster.internal/ubuntu plucky/main s390x g++ s390x 4:14.2.0-1ubuntu1 [1080 B]
222s Get:22 http://ftpmaster.internal/ubuntu plucky/main s390x build-essential s390x 12.10ubuntu1 [4930 B]
222s Get:23 http://ftpmaster.internal/ubuntu plucky/main s390x dctrl-tools s390x 2.24-3build3 [106 kB]
222s Get:24 http://ftpmaster.internal/ubuntu plucky/main s390x libfreetype6 s390x 2.13.3+dfsg-1 [431 kB]
223s Get:25 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-mono all 2.37-8 [502 kB]
223s Get:26 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-dejavu-core all 2.37-8 [835 kB]
224s Get:27 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig-config s390x 2.15.0-2ubuntu1 [37.5 kB]
224s Get:28 http://ftpmaster.internal/ubuntu plucky/main s390x libfontconfig1 s390x 2.15.0-2ubuntu1 [150 kB]
224s Get:29 http://ftpmaster.internal/ubuntu plucky/main s390x fontconfig s390x 2.15.0-2ubuntu1 [191 kB]
224s Get:30 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
225s Get:31 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
225s Get:32 http://ftpmaster.internal/ubuntu plucky/universe s390x fonts-lmodern all 2.005-1 [4799 kB]
230s Get:33 http://ftpmaster.internal/ubuntu plucky/main s390x fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
233s Get:34 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran5 s390x 15-20250222-0ubuntu1 [620 kB]
233s Get:35 http://ftpmaster.internal/ubuntu plucky/main s390x libgfortran-14-dev s390x 14.2.0-17ubuntu3 [654 kB]
234s Get:36 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14-s390x-linux-gnu s390x 14.2.0-17ubuntu3 [10.3 MB]
245s Get:37 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-14 s390x 14.2.0-17ubuntu3 [13.6 kB]
245s Get:38 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran-s390x-linux-gnu s390x 4:14.2.0-1ubuntu1 [1012 B]
245s Get:39 http://ftpmaster.internal/ubuntu plucky/main s390x gfortran s390x 4:14.2.0-1ubuntu1 [1160 B]
245s Get:40 http://ftpmaster.internal/ubuntu plucky/main s390x icu-devtools s390x 76.1-1ubuntu2 [225 kB]
245s Get:41 http://ftpmaster.internal/ubuntu plucky/main s390x javascript-common all 12 [5216 B]
245s Get:42 http://ftpmaster.internal/ubuntu plucky/main s390x libio-string-perl all 1.08-4 [11.1 kB]
245s Get:43 http://ftpmaster.internal/ubuntu plucky/universe s390x liblatex-tounicode-perl all 0.55-1 [28.8 kB]
245s Get:44 http://ftpmaster.internal/ubuntu plucky/universe s390x libbibtex-parser-perl all 1.05+dfsg-1 [16.5 kB]
245s Get:45 http://ftpmaster.internal/ubuntu plucky/main s390x libblas3 s390x 3.12.1-2 [252 kB]
245s Get:46 http://ftpmaster.internal/ubuntu plucky/main s390x libblas-dev s390x 3.12.1-2 [254 kB]
245s Get:47 http://ftpmaster.internal/ubuntu plucky/main s390x libbz2-dev s390x 1.0.8-6 [39.1 kB]
245s Get:48 http://ftpmaster.internal/ubuntu plucky/main s390x libpixman-1-0 s390x 0.44.0-3 [201 kB]
246s Get:49 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-render0 s390x 1.17.0-2 [17.0 kB]
246s Get:50 http://ftpmaster.internal/ubuntu plucky/main s390x libxcb-shm0 s390x 1.17.0-2 [5862 B]
246s Get:51 http://ftpmaster.internal/ubuntu plucky/main s390x libxrender1 s390x 1:0.9.10-1.1build1 [20.4 kB]
246s Get:52 http://ftpmaster.internal/ubuntu plucky/main s390x libcairo2 s390x 1.18.2-2 [580 kB]
246s Get:53 http://ftpmaster.internal/ubuntu plucky/main s390x libdatrie1 s390x 0.2.13-3build1 [20.6 kB]
246s Get:54 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate0 s390x 1.23-1 [46.1 kB]
246s Get:55 http://ftpmaster.internal/ubuntu plucky/main s390x libdeflate-dev s390x 1.23-1 [52.2 kB]
246s Get:56 http://ftpmaster.internal/ubuntu plucky/main s390x libgraphite2-3 s390x 1.3.14-2ubuntu1 [79.8 kB]
246s Get:57 http://ftpmaster.internal/ubuntu plucky/main s390x libharfbuzz0b s390x 10.2.0-1 [538 kB]
247s Get:58 http://ftpmaster.internal/ubuntu plucky/main s390x x11-common all 1:7.7+23ubuntu3 [21.7 kB]
247s Get:59 http://ftpmaster.internal/ubuntu plucky/main s390x libice6 s390x 2:1.1.1-1 [45.4 kB]
247s Get:60 http://ftpmaster.internal/ubuntu plucky/main s390x libicu-dev s390x 76.1-1ubuntu2 [12.2 MB]
260s Get:61 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8 s390x 2.1.5-3ubuntu2 [147 kB]
260s Get:62 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-turbo8-dev s390x 2.1.5-3ubuntu2 [281 kB]
260s Get:63 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8 s390x 8c-2ubuntu11 [2146 B]
260s Get:64 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg8-dev s390x 8c-2ubuntu11 [1484 B]
260s Get:65 http://ftpmaster.internal/ubuntu plucky/main s390x libjpeg-dev s390x 8c-2ubuntu11 [1484 B]
260s Get:66 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
261s Get:67 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
261s Get:68 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
261s Get:69 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-d3 all 3.5.17-4 [132 kB]
261s Get:70 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-es5-shim all 4.6.7-2 [39.8 kB]
261s Get:71 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
262s Get:72 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
263s Get:73 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
263s Get:74 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
263s Get:75 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
263s Get:76 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
263s Get:77 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
263s Get:78 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
263s Get:79 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
263s Get:80 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
263s Get:81 http://ftpmaster.internal/ubuntu plucky/main s390x libkpathsea6 s390x 2024.20240313.70630+ds-5build2 [66.9 kB]
263s Get:82 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack3 s390x 3.12.1-2 [2971 kB]
266s Get:83 http://ftpmaster.internal/ubuntu plucky/main s390x liblapack-dev s390x 3.12.1-2 [5967 kB]
272s Get:84 http://ftpmaster.internal/ubuntu plucky/main s390x liblua5.4-0 s390x 5.4.7-1 [174 kB]
273s Get:85 http://ftpmaster.internal/ubuntu plucky/universe s390x libmpfi0 s390x 1.5.4+ds-4 [34.1 kB]
273s Get:86 http://ftpmaster.internal/ubuntu plucky/main s390x libncurses-dev s390x 6.5+20250216-2 [407 kB]
273s Get:87 http://ftpmaster.internal/ubuntu plucky/main s390x libthai-data all 0.1.29-2build1 [158 kB]
273s Get:88 http://ftpmaster.internal/ubuntu plucky/main s390x libthai0 s390x 0.1.29-2build1 [20.7 kB]
273s Get:89 http://ftpmaster.internal/ubuntu plucky/main s390x libpango-1.0-0 s390x 1.56.2-1 [253 kB]
274s Get:90 http://ftpmaster.internal/ubuntu plucky/main s390x libpangoft2-1.0-0 s390x 1.56.2-1 [50.2 kB]
274s Get:91 http://ftpmaster.internal/ubuntu plucky/main s390x libpangocairo-1.0-0 s390x 1.56.2-1 [28.2 kB]
274s Get:92 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper2 s390x 2.2.5-0.3 [17.2 kB]
274s Get:93 http://ftpmaster.internal/ubuntu plucky/main s390x libpaper-utils s390x 2.2.5-0.3 [15.3 kB]
274s Get:94 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-16-0 s390x 10.45-1 [259 kB]
274s Get:95 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-32-0 s390x 10.45-1 [245 kB]
274s Get:96 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-posix3 s390x 10.45-1 [7080 B]
274s Get:97 http://ftpmaster.internal/ubuntu plucky/main s390x libpcre2-dev s390x 10.45-1 [899 kB]
275s Get:98 http://ftpmaster.internal/ubuntu plucky/main s390x libpkgconf3 s390x 1.8.1-4 [31.2 kB]
275s Get:99 http://ftpmaster.internal/ubuntu plucky/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1ubuntu1 [898 kB]
276s Get:100 http://ftpmaster.internal/ubuntu plucky/main s390x libpng-dev s390x 1.6.47-1 [278 kB]
277s Get:101 http://ftpmaster.internal/ubuntu plucky/universe s390x libpotrace0 s390x 1.16-2build1 [18.7 kB]
277s Get:102 http://ftpmaster.internal/ubuntu plucky/main s390x libptexenc1 s390x 2024.20240313.70630+ds-5build2 [43.4 kB]
277s Get:103 http://ftpmaster.internal/ubuntu plucky/main s390x libreadline-dev s390x 8.2-6 [187 kB]
277s Get:104 http://ftpmaster.internal/ubuntu plucky/main s390x libsharpyuv0 s390x 1.5.0-0.1 [16.7 kB]
277s Get:105 http://ftpmaster.internal/ubuntu plucky/main s390x libsm6 s390x 2:1.2.4-1 [18.4 kB]
277s Get:106 http://ftpmaster.internal/ubuntu plucky/main s390x libsynctex2 s390x 2024.20240313.70630+ds-5build2 [64.6 kB]
277s Get:107 http://ftpmaster.internal/ubuntu plucky/main s390x libtcl8.6 s390x 8.6.16+dfsg-1 [1034 kB]
278s Get:108 http://ftpmaster.internal/ubuntu plucky/universe s390x libteckit0 s390x 2.5.12+ds1-1 [433 kB]
279s Get:109 http://ftpmaster.internal/ubuntu plucky/main s390x libtexlua53-5 s390x 2024.20240313.70630+ds-5build2 [131 kB]
279s Get:110 http://ftpmaster.internal/ubuntu plucky/main s390x libjbig0 s390x 2.1-6.1ubuntu2 [33.1 kB]
279s Get:111 http://ftpmaster.internal/ubuntu plucky/main s390x libwebp7 s390x 1.5.0-0.1 [210 kB]
279s Get:112 http://ftpmaster.internal/ubuntu plucky/main s390x libtiff6 s390x 4.5.1+git230720-4ubuntu4 [217 kB]
280s Get:113 http://ftpmaster.internal/ubuntu plucky/main s390x libxft2 s390x 2.3.6-1build1 [49.6 kB]
280s Get:114 http://ftpmaster.internal/ubuntu plucky/main s390x libxss1 s390x 1:1.2.3-1build3 [7396 B]
280s Get:115 http://ftpmaster.internal/ubuntu plucky/main s390x libtk8.6 s390x 8.6.16-1 [830 kB]
281s Get:116 http://ftpmaster.internal/ubuntu plucky/main s390x libxt6t64 s390x 1:1.2.1-1.2build1 [184 kB]
281s Get:117 http://ftpmaster.internal/ubuntu plucky/main s390x libxmu6 s390x 2:1.1.3-3build2 [53.0 kB]
281s Get:118 http://ftpmaster.internal/ubuntu plucky/main s390x libxpm4 s390x 1:3.5.17-1build2 [41.2 kB]
281s Get:119 http://ftpmaster.internal/ubuntu plucky/main s390x libxaw7 s390x 2:1.0.16-1 [201 kB]
281s Get:120 http://ftpmaster.internal/ubuntu plucky/main s390x libxi6 s390x 2:1.8.2-1 [35.4 kB]
281s Get:121 http://ftpmaster.internal/ubuntu plucky/universe s390x libzzip-0-13t64 s390x 0.13.78+dfsg.1-0.1 [29.8 kB]
281s Get:122 http://ftpmaster.internal/ubuntu plucky/main s390x zip s390x 3.0-14ubuntu2 [187 kB]
281s Get:123 http://ftpmaster.internal/ubuntu plucky/main s390x unzip s390x 6.0-28ubuntu6 [186 kB]
282s Get:124 http://ftpmaster.internal/ubuntu plucky/main s390x xdg-utils all 1.2.1-2ubuntu1 [66.0 kB]
282s Get:125 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-core s390x 4.4.3-1 [28.6 MB]
314s Get:126 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-littler s390x 0.3.20-2 [95.0 kB]
314s Get:127 http://ftpmaster.internal/ubuntu plucky/universe s390x littler all 0.3.20-2 [2554 B]
314s Get:128 http://ftpmaster.internal/ubuntu plucky/universe s390x node-bootstrap-sass all 3.4.3-2 [187 kB]
314s Get:129 http://ftpmaster.internal/ubuntu plucky/universe s390x node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
314s Get:130 http://ftpmaster.internal/ubuntu plucky/universe s390x node-normalize.css all 8.0.1-5 [10.8 kB]
314s Get:131 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc-data all 3.1.11.1-3build1 [78.8 kB]
314s Get:132 http://ftpmaster.internal/ubuntu plucky/universe s390x pandoc s390x 3.1.11.1+ds-2 [52.5 MB]
367s Get:133 http://ftpmaster.internal/ubuntu plucky/main s390x liblzma-dev s390x 5.6.4-1 [183 kB]
367s Get:134 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf-bin s390x 1.8.1-4 [21.5 kB]
367s Get:135 http://ftpmaster.internal/ubuntu plucky/main s390x pkgconf s390x 1.8.1-4 [16.7 kB]
367s Get:136 http://ftpmaster.internal/ubuntu plucky/main s390x libtirpc-dev s390x 1.3.4+ds-1.3 [196 kB]
367s Get:137 http://ftpmaster.internal/ubuntu plucky/universe s390x r-base-dev all 4.4.3-1 [4176 B]
367s Get:138 http://ftpmaster.internal/ubuntu plucky/universe s390x pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
367s Get:139 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocgenerics all 0.52.0-2 [624 kB]
368s Get:140 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-base64enc s390x 0.1-3-3 [28.0 kB]
368s Get:141 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-digest s390x 0.6.37-1 [205 kB]
368s Get:142 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fastmap s390x 1.2.0-1 [72.4 kB]
368s Get:143 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rlang s390x 1.1.5-1 [1713 kB]
370s Get:144 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-htmltools s390x 0.5.8.1-1 [372 kB]
370s Get:145 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-evaluate all 1.0.3-1 [114 kB]
370s Get:146 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xfun s390x 0.51+dfsg-1 [574 kB]
371s Get:147 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-highr all 0.11+dfsg-1 [38.5 kB]
371s Get:148 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-yaml s390x 2.3.10-1 [113 kB]
371s Get:149 http://ftpmaster.internal/ubuntu plucky/main s390x libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
376s Get:150 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-knitr all 1.49+dfsg-1 [859 kB]
377s Get:151 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cachem s390x 1.1.0-1 [74.0 kB]
377s Get:152 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
377s Get:153 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-jsonlite s390x 1.9.1+dfsg-1 [447 kB]
377s Get:154 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-cli s390x 3.6.4-1 [1379 kB]
378s Get:155 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-glue s390x 1.8.0-1 [164 kB]
379s Get:156 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
379s Get:157 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-memoise all 2.0.1-1 [53.9 kB]
379s Get:158 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-mime s390x 0.12-2 [35.8 kB]
379s Get:159 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fs s390x 1.6.5+dfsg-1 [245 kB]
379s Get:160 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-r6 all 2.6.1-1 [101 kB]
379s Get:161 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rappdirs s390x 0.3.3-1 [47.5 kB]
379s Get:162 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sass s390x 0.4.9+dfsg-1 [1019 kB]
380s Get:163 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bslib all 0.8.0+dfsg-1 [4294 kB]
384s Get:164 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fontawesome all 0.5.3-1 [1331 kB]
385s Get:165 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tinytex all 0.56-1 [148 kB]
385s Get:166 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-modernizr all 3.13.0-0.1 [101 kB]
385s Get:167 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgkitten all 0.2.4-1 [27.2 kB]
385s Get:168 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rcpp s390x 1.0.14-1 [2003 kB]
387s Get:169 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-later s390x 1.4.1+dfsg-1 [148 kB]
387s Get:170 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-magrittr s390x 2.0.3-1 [154 kB]
387s Get:171 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-promises s390x 1.3.2+dfsg-1 [296 kB]
387s Get:172 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-httpuv s390x 1.6.15+dfsg-1 [507 kB]
388s Get:173 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-xtable all 1:1.8-4-2 [689 kB]
388s Get:174 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-sourcetools s390x 0.1.7-1-1 [47.1 kB]
388s Get:175 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-crayon all 1.5.3-1 [165 kB]
389s Get:176 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-withr all 3.0.2+dfsg-1 [214 kB]
389s Get:177 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-commonmark s390x 1.9.2-2 [142 kB]
389s Get:178 http://ftpmaster.internal/ubuntu plucky/universe s390x libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
389s Get:179 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-shiny all 1.10.0+dfsg-2 [3124 kB]
392s Get:180 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rmarkdown all 2.29+dfsg-1 [1501 kB]
393s Get:181 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bookdown all 0.42+dfsg-1 [1409 kB]
395s Get:182 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-biocmanager all 1.30.25+dfsg-1 [132 kB]
395s Get:183 http://ftpmaster.internal/ubuntu plucky/universe s390x tex-common all 6.19 [29.8 kB]
395s Get:184 http://ftpmaster.internal/ubuntu plucky/main s390x t1utils s390x 1.41-4build3 [65.6 kB]
395s Get:185 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-binaries s390x 2024.20240313.70630+ds-5build2 [9171 kB]
404s Get:186 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-base all 2024.20250114-1 [22.5 MB]
421s Get:187 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-latex-base all 2024.20250114-1 [1264 kB]
421s Get:188 http://ftpmaster.internal/ubuntu plucky/universe s390x texlive-bibtex-extra all 2024.20250114-1 [79.5 MB]
469s Get:189 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocversion all 3.20.0-2 [11.1 kB]
469s Get:190 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-biocstyle all 2.34.0+dfsg-1 [451 kB]
469s Get:191 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrixstats s390x 1.5.0-1 [539 kB]
469s Get:192 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-matrixgenerics all 1.18.1-1 [450 kB]
470s Get:193 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-lattice s390x 0.22-6-1 [1340 kB]
470s Get:194 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-matrix s390x 1.7-3-1 [4449 kB]
473s Get:195 http://ftpmaster.internal/ubuntu plucky/universe s390x r-bioc-sparsematrixstats s390x 1.18.0+dfsg-2 [867 kB]
474s Get:196 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-utf8 s390x 1.2.4-1 [143 kB]
474s Get:197 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-vctrs s390x 0.6.5-1 [1448 kB]
475s Get:198 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pillar all 1.10.1+dfsg-1 [453 kB]
476s Get:199 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-profmem all 0.6.0+dfsg-1 [46.5 kB]
476s Get:200 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-fansi s390x 1.0.5-1 [615 kB]
476s Get:201 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
476s Get:202 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-tibble s390x 3.2.1+dfsg-3 [420 kB]
476s Get:203 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-bench s390x 1.1.4-1 [305 kB]
477s Get:204 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-brio s390x 1.1.5-1 [38.6 kB]
477s Get:205 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-ps s390x 1.9.0-1 [408 kB]
477s Get:206 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-processx s390x 3.8.6-1 [364 kB]
478s Get:207 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-callr all 3.7.6-1 [458 kB]
478s Get:208 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-desc all 1.4.3-1 [359 kB]
479s Get:209 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-diffobj s390x 0.3.5-1 [1115 kB]
480s Get:210 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgbuild all 1.4.6-1 [213 kB]
480s Get:211 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-rprojroot all 2.0.4-2 [125 kB]
480s Get:212 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-pkgload all 1.4.0-1 [247 kB]
480s Get:213 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-praise all 1.0.0-4build1 [20.3 kB]
480s Get:214 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-waldo all 0.6.1-2 [150 kB]
480s Get:215 http://ftpmaster.internal/ubuntu plucky/universe s390x r-cran-testthat s390x 3.2.3-1 [1641 kB]
483s Preconfiguring packages ...
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483s Preparing to unpack .../000-libisl23_0.27-1_s390x.deb ...
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483s Selecting previously unselected package libmpc3:s390x.
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483s Selecting previously unselected package cpp-14-s390x-linux-gnu.
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483s Selecting previously unselected package gcc-14.
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483s Selecting previously unselected package libstdc++-14-dev:s390x.
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483s Selecting previously unselected package g++-14-s390x-linux-gnu.
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484s Selecting previously unselected package g++-14.
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484s Selecting previously unselected package build-essential.
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484s Selecting previously unselected package dctrl-tools.
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484s Selecting previously unselected package libfreetype6:s390x.
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484s Selecting previously unselected package fonts-dejavu-mono.
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484s Selecting previously unselected package fontconfig-config.
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484s Selecting previously unselected package libfontconfig1:s390x.
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484s Selecting previously unselected package fontconfig.
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484s Selecting previously unselected package fonts-font-awesome.
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484s Selecting previously unselected package fonts-glyphicons-halflings.
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484s Selecting previously unselected package libio-string-perl.
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484s Selecting previously unselected package libblas3:s390x.
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484s Selecting previously unselected package libpixman-1-0:s390x.
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484s Selecting previously unselected package libxcb-render0:s390x.
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484s Selecting previously unselected package libxrender1:s390x.
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484s Selecting previously unselected package libcairo2:s390x.
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484s Selecting previously unselected package libdatrie1:s390x.
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484s Selecting previously unselected package libdeflate0:s390x.
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485s Selecting previously unselected package libdeflate-dev:s390x.
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485s Selecting previously unselected package libgraphite2-3:s390x.
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485s Selecting previously unselected package libharfbuzz0b:s390x.
485s Preparing to unpack .../056-libharfbuzz0b_10.2.0-1_s390x.deb ...
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485s Selecting previously unselected package x11-common.
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485s Selecting previously unselected package libice6:s390x.
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485s Selecting previously unselected package libicu-dev:s390x.
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485s Selecting previously unselected package libjpeg-turbo8:s390x.
485s Preparing to unpack .../060-libjpeg-turbo8_2.1.5-3ubuntu2_s390x.deb ...
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485s Selecting previously unselected package libjpeg-turbo8-dev:s390x.
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485s Selecting previously unselected package libjpeg8:s390x.
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485s Selecting previously unselected package libjs-d3.
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485s Selecting previously unselected package libjs-lunr.
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485s Selecting previously unselected package libkpathsea6:s390x.
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485s Unpacking libkpathsea6:s390x (2024.20240313.70630+ds-5build2) ...
485s Selecting previously unselected package liblapack3:s390x.
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485s Selecting previously unselected package liblapack-dev:s390x.
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485s Selecting previously unselected package liblua5.4-0:s390x.
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486s Selecting previously unselected package r-cran-littler.
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487s Selecting previously unselected package liblzma-dev:s390x.
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487s Selecting previously unselected package r-cran-base64enc.
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488s Selecting previously unselected package libjs-mathjax.
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488s Selecting previously unselected package r-cran-knitr.
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488s Selecting previously unselected package r-cran-cachem.
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488s Selecting previously unselected package r-cran-jquerylib.
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488s Selecting previously unselected package r-cran-jsonlite.
488s Preparing to unpack .../152-r-cran-jsonlite_1.9.1+dfsg-1_s390x.deb ...
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488s Selecting previously unselected package r-cran-cli.
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488s Selecting previously unselected package r-cran-glue.
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488s Selecting previously unselected package r-cran-sass.
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488s Unpacking r-cran-sass (0.4.9+dfsg-1) ...
488s Selecting previously unselected package r-cran-bslib.
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488s Selecting previously unselected package r-cran-fontawesome.
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488s Selecting previously unselected package r-cran-tinytex.
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488s Selecting previously unselected package libjs-modernizr.
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488s Selecting previously unselected package r-cran-pkgkitten.
488s Preparing to unpack .../166-r-cran-pkgkitten_0.2.4-1_all.deb ...
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488s Selecting previously unselected package r-cran-rcpp.
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488s Selecting previously unselected package r-cran-later.
488s Preparing to unpack .../168-r-cran-later_1.4.1+dfsg-1_s390x.deb ...
488s Unpacking r-cran-later (1.4.1+dfsg-1) ...
489s Selecting previously unselected package r-cran-magrittr.
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489s Selecting previously unselected package r-cran-promises.
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489s Selecting previously unselected package r-cran-httpuv.
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489s Selecting previously unselected package r-cran-xtable.
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489s Selecting previously unselected package r-cran-sourcetools.
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489s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
489s Selecting previously unselected package r-cran-crayon.
489s Preparing to unpack .../174-r-cran-crayon_1.5.3-1_all.deb ...
489s Unpacking r-cran-crayon (1.5.3-1) ...
489s Selecting previously unselected package r-cran-withr.
489s Preparing to unpack .../175-r-cran-withr_3.0.2+dfsg-1_all.deb ...
489s Unpacking r-cran-withr (3.0.2+dfsg-1) ...
489s Selecting previously unselected package r-cran-commonmark.
489s Preparing to unpack .../176-r-cran-commonmark_1.9.2-2_s390x.deb ...
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489s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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489s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
489s Selecting previously unselected package r-cran-shiny.
489s Preparing to unpack .../178-r-cran-shiny_1.10.0+dfsg-2_all.deb ...
489s Unpacking r-cran-shiny (1.10.0+dfsg-2) ...
489s Selecting previously unselected package r-cran-rmarkdown.
489s Preparing to unpack .../179-r-cran-rmarkdown_2.29+dfsg-1_all.deb ...
489s Unpacking r-cran-rmarkdown (2.29+dfsg-1) ...
489s Selecting previously unselected package r-cran-bookdown.
489s Preparing to unpack .../180-r-cran-bookdown_0.42+dfsg-1_all.deb ...
489s Unpacking r-cran-bookdown (0.42+dfsg-1) ...
489s Selecting previously unselected package r-cran-biocmanager.
489s Preparing to unpack .../181-r-cran-biocmanager_1.30.25+dfsg-1_all.deb ...
489s Unpacking r-cran-biocmanager (1.30.25+dfsg-1) ...
489s Selecting previously unselected package tex-common.
489s Preparing to unpack .../182-tex-common_6.19_all.deb ...
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489s Selecting previously unselected package t1utils.
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489s Unpacking t1utils (1.41-4build3) ...
489s Selecting previously unselected package texlive-binaries.
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489s Selecting previously unselected package texlive-base.
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498s Setting up r-cran-vctrs (0.6.5-1) ...
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498s Setting up r-cran-callr (3.7.6-1) ...
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498s Setting up r-cran-tibble (3.2.1+dfsg-3) ...
498s Setting up r-cran-fontawesome (0.5.3-1) ...
498s Setting up gfortran (4:14.2.0-1ubuntu1) ...
498s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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498s Setting up r-cran-bench (1.1.4-1) ...
498s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
498s Setting up texlive-bibtex-extra (2024.20250114-1) ...
498s Setting up r-cran-memoise (2.0.1-1) ...
498s Setting up r-cran-promises (1.3.2+dfsg-1) ...
498s Setting up r-cran-pkgbuild (1.4.6-1) ...
498s Setting up r-cran-pkgload (1.4.0-1) ...
498s Setting up r-base-dev (4.4.3-1) ...
498s Setting up r-cran-httpuv (1.6.15+dfsg-1) ...
498s Setting up r-cran-testthat (3.2.3-1) ...
498s Setting up r-cran-bslib (0.8.0+dfsg-1) ...
498s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
498s Setting up r-cran-shiny (1.10.0+dfsg-2) ...
498s Setting up r-cran-rmarkdown (2.29+dfsg-1) ...
498s Setting up r-cran-bookdown (0.42+dfsg-1) ...
498s Setting up r-bioc-biocstyle (2.34.0+dfsg-1) ...
498s Processing triggers for libc-bin (2.41-1ubuntu2) ...
498s Processing triggers for man-db (2.13.0-1) ...
499s Processing triggers for install-info (7.1.1-1) ...
499s Processing triggers for tex-common (6.19) ...
499s Running updmap-sys. This may take some time... done.
499s Running mktexlsr /var/lib/texmf ... done.
499s Building format(s) --all.
538s 	This may take some time... done.
539s autopkgtest [17:58:07]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
539s autopkgtest [17:58:07]: test pkg-r-autopkgtest: [-----------------------
539s Test: Try to load the R library sparseMatrixStats
539s 
539s R version 4.4.3 (2025-02-28) -- "Trophy Case"
539s Copyright (C) 2025 The R Foundation for Statistical Computing
539s Platform: s390x-ibm-linux-gnu
539s 
539s R is free software and comes with ABSOLUTELY NO WARRANTY.
539s You are welcome to redistribute it under certain conditions.
539s Type 'license()' or 'licence()' for distribution details.
539s 
539s R is a collaborative project with many contributors.
539s Type 'contributors()' for more information and
539s 'citation()' on how to cite R or R packages in publications.
539s 
539s Type 'demo()' for some demos, 'help()' for on-line help, or
539s 'help.start()' for an HTML browser interface to help.
539s Type 'q()' to quit R.
539s 
539s > library('sparseMatrixStats')
539s Loading required package: MatrixGenerics
539s Loading required package: matrixStats
539s 
539s Attaching package: ‘MatrixGenerics’
539s 
539s The following objects are masked from ‘package:matrixStats’:
539s 
539s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
539s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
539s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
539s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
539s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
539s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
539s     colWeightedMeans, colWeightedMedians, colWeightedSds,
539s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
539s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
539s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
539s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
539s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
539s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
539s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
539s     rowWeightedSds, rowWeightedVars
539s 
540s > 
540s > 
540s Other tests are currently unsupported!
540s They will be progressively added.
540s autopkgtest [17:58:08]: test pkg-r-autopkgtest: -----------------------]
541s autopkgtest [17:58:09]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
541s pkg-r-autopkgtest    PASS
541s autopkgtest [17:58:09]: @@@@@@@@@@@@@@@@@@@@ summary
541s pkg-r-autopkgtest    PASS
559s nova [W] Using flock in prodstack6-s390x
559s Creating nova instance adt-plucky-s390x-r-bioc-sparsematrixstats-20250315-174908-juju-7f2275-prod-proposed-migration-environment-15-f4ac163b-6f44-4b67-bb83-bcac54fb665d from image adt/ubuntu-plucky-s390x-server-20250315.img (UUID 3d3557fa-fd0f-4bba-9b89-8d5964e09f61)...
559s nova [W] Timed out waiting for 26eabf65-9b74-4e02-b0b1-704a56d6ee8a to get deleted.